BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] (675 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1] gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2] gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2] gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1] Length = 675 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 675/675 (100%), Positives = 675/675 (100%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 674/675 (99%), Positives = 674/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 673/675 (99%), Positives = 673/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE VS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSETVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 673/675 (99%), Positives = 673/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 672/675 (99%), Positives = 672/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 PLKAEGYEAKRYRK Sbjct: 661 FPLKAEGYEAKRYRK 675 >gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 672/675 (99%), Positives = 672/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD PYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 645 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 208/698 (29%), Positives = 309/698 (44%), Gaps = 77/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + ID+ET S PL K GV+ YAE I L Y+ D V++ D +P ++L Sbjct: 1 MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DETV A N++FER+ + LGI + W C+ + A T GLP SLK+ L Sbjct: 61 AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K+EEGK LI FC + A+ + W+LF EY KRDVE + Sbjct: 121 DRQ--KLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 RL P+ + E + +++DQ INDRG +D V + + + E + Sbjct: 179 ARLKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQN--LTDL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+ + +++ + +L + ++++ R S +++ K Sbjct: 237 ENPNSPLQLMDWLHGK-GLSVESLAKSEVTKMLKTATGD--VREVLELRQQLSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + +D R RG QFYGA+RTGR++G + Q QNLP+ ++ +T+ E Sbjct: 294 MAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFEL 353 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ + + VVAD A IEARVLAW+AGE W + F DI Sbjct: 354 LDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDI 413 Query: 409 YVTTYAKAFN--TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T ++ F+ + + R GK L+ GY G M Sbjct: 414 YCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 AV+ + + + WRA + ++Q W D+ Sbjct: 460 --------------------------AVESGMKEEELQPLVDLWRASNPHIVQFWWDVDR 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V+ + + V + I LPS R L Y+ + + Sbjct: 494 AVKTCVKRRVEVETHGIRCV------YKSGVLFIRLPSGRELAYAKPRIGENRFGGESVT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 T + R T+GGKL ENI Q +RD+L MK G+DIV+ VHDEIV E P Sbjct: 548 YEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +CS+M +NP WAKGLPLKA+GYE + YRK Sbjct: 608 YG-VSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 214/702 (30%), Positives = 319/702 (45%), Gaps = 76/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L ID+ET S + G + Y E I L AYA++DEPV++ D +PS++ Sbjct: 5 IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER K P ++W CT V A T GLPSSL AL F Sbjct: 65 YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124 Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 E KM+EGKALI FCK + + ++ W+ F EYCKRDVE RE+ Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L E+ LW LDQ INDRG DL L+ + E ++L + ++LT Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTGLE- 243 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKDLILNRLASSGSAIL 290 + ++ ++ G ++ +++ ++ ++ + ++ R + ++I Sbjct: 244 -NPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTSIK 302 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K +T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + + + Sbjct: 303 KYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGKF 362 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + S +R+ I G + +V+D + IEARV+AW AGE W++ F+ Sbjct: 363 QEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTHG 422 Query: 407 DIYVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY + ++ F I+ K E R GK+ ELALGY G +M Sbjct: 423 KIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKS-------- 474 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + K+WR + + + W D+ Sbjct: 475 ---------------------------------IPEEELPGLVKSWRNANPNITKFWWDV 501 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS------ 578 + V++E +++ + L + I LPS R+L Y K + Sbjct: 502 DKAAKKVIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSGD 556 Query: 579 -----YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + Q R TYG KL ENIVQA SRD L E M K GYDIV+ VHDE+V Sbjct: 557 KITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHDEVV 616 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P +V + LM + WA GLPLKA+GYE Y+K Sbjct: 617 LDIPKDRA-TVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657 >gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] Length = 644 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 212/698 (30%), Positives = 327/698 (46%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D PV++ D +P ++ Sbjct: 1 MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q + D V A N+ FERI K GI + W CT V + GLP SL+ A + Sbjct: 61 QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTG- 119 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K+ +GK LI F CK ++ + H + W F Y RDVE + Sbjct: 120 -ADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ + E + ++LDQ INDRG ++DL+LV K + + R++L + + + Sbjct: 179 EKLQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKE--LTDL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + ++K++L + +++ R + S++ K Sbjct: 237 DNPNSVVQMKSWLSEK-GLETDSLDKASVKALLKEAPEH--LSEVLELRQLLAKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV +DGR RG LQFYGA+RTGR++G + Q QNLP+ S+ + + + Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G+ S+ +R+ + G K +VAD + IEARV+AW+AGE W+ + FA I Sbjct: 354 LEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P+++V+K R GK+ ELALGY G K M Sbjct: 414 YEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + + AWR + +++LW D+ Sbjct: 460 --------------------------ALDMGLTEEELKPLVYAWRNANPNIVRLWWDVDR 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---- 582 V E R+ + I LPS R+L Y + + + Sbjct: 494 AVKEAVTERCRTETHRIR------FEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVT 547 Query: 583 -----ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + R +YG K ENIVQAISRD+LC M+N ++G +IV+ VHDE+V E P Sbjct: 548 YEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V +C LM + P WA GL L+A+G+E Y+K Sbjct: 608 LE--ICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643 >gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] Length = 655 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 219/705 (31%), Positives = 322/705 (45%), Gaps = 81/705 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L ID+ET S + G + Y E I L AYA++DEPV++ D T+ A+P ++ Sbjct: 1 MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGLPSSLKNACLA 115 L D V+ A N+ FER K G+ P +W CT + A T GLPSSL A Sbjct: 61 DALYDPDVIKTAFNANFERSAIK--FGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKA 118 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKRDVEATR 171 L E KM+EGKALI FCK + D + ++ W+ F EYCKRDVE R Sbjct: 119 LKLEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVER 178 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+ L E+ LW LDQ INDRG DL L+ + E ++L + +KLT Sbjct: 179 EIRNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG 238 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI--TQLAKDLILNRLASSGS 287 + ++ ++ G ++ +++ ++ ++ + ++ R + + Sbjct: 239 LE--NPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT 296 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 +I K +T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 297 SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVRE 356 Query: 348 NRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + E S +R+ I G + +V+D + IEARV+AW AGE W++ F+ Sbjct: 357 GKFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFS 416 Query: 404 NGEDIYVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ F PI+ K E R GK+ ELALGY G +M Sbjct: 417 THGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKS----- 471 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + K+WR + + + W Sbjct: 472 ------------------------------------IPEEELPGLVKSWRNANPNITKFW 495 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS--- 578 D+ + ++E +++ + L + I LPS R+L Y K + Sbjct: 496 WDVDKAAKKAIRERTTVNLQYG-----LKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETF 550 Query: 579 --------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + Q R TYG KL ENIVQA SRD L E M K GYDIV+ VHD Sbjct: 551 SGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVHD 610 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V + P +V + LM + WA GLPLKA+GYE Y K Sbjct: 611 EVVLDIPKDRA-TVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654 >gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932] gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196] gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196] Length = 652 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 220/700 (31%), Positives = 334/700 (47%), Gaps = 74/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATRELF 174 +E KM+EGKALI FCK + N ++ W F EYCK+DV RE+ Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L ++ E LW LDQ IND G ++D +L+ E + +KL ++ +K+T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G ++ +++ ++ IL + + + ++ R S ++I K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVR-ILELRKLMSKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + + Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G + +V+D + IEARV+AW+AGE W++ F + I Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI+ + K E R GK+ EL+ GY G +M + Sbjct: 418 YEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK----------- 466 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + AWR + + + W D+ + Sbjct: 467 -----------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVDK 497 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578 +++ + + + + + I LPSSRRL Y K + Sbjct: 498 AAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552 Query: 579 ---YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + Q R TYG KL ENIVQA +RD L E M N T GY IV+ VHDE+V + Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 206/699 (29%), Positives = 317/699 (45%), Gaps = 74/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET + KVG + Y E I L AYA++DEPV++ D + +P + Sbjct: 1 MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + ++ A N+ FE KK L I ++ W CT V + GLP SL L F Sbjct: 61 TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120 Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 E KM+EGKALI FCK + + + W++F +Y K+DVE R + Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P ++ E+ LW LDQ INDRG D++L+ K E K+L ++ +LT + Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ ++ G ++ +++ ++ +++ S + K ++ R + ++I K Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKDEK-VKKILELRQLMAKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + + + + Sbjct: 298 ETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFDK 357 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R+ I G + +VAD + IEARV+AW AGE W++ F N DI Sbjct: 358 VEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNGDI 417 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + +K F P++K + R GK+ ELALGY G +M Sbjct: 418 YCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKK----------- 466 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + K WR + + W D+ + Sbjct: 467 ------------------------------NIPEDELPGLVKDWRDASPHITKFWWDVDK 496 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------CS 578 ++E ++ L + I LPS R+L Y K + + Sbjct: 497 AAKKAIRERTTV-----VLQFGLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDKPIIT 551 Query: 579 YLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 Y + Q TYG K+ ENIVQA +RD L M+ G+ IV+ VHDE++ + Sbjct: 552 YEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDELICDV 611 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P +V +C + + WA GLPLKA+GYE Y K Sbjct: 612 PKGK-GTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649 >gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 646 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 205/702 (29%), Positives = 307/702 (43%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LPK GV+ Y E I L AY+ D +PV++ D +P +++ Sbjct: 1 MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+TV+ A N+ FERI + LG + + W C+ + A T GLP SL+ Sbjct: 61 AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L K+ EGK LI FC+ + + R H W+ F Y RDVE Sbjct: 121 VLGLE--KQKLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +L P+ + + + +DQ INDRG R+D++LV + + + R++L I Sbjct: 179 MGIQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKD-- 236 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L GI+ + + + +L + D++ R + S+ Sbjct: 237 MTELENPNSVQQMKQWLSD-NGIETDSLDKKAVAELLKDAPDN--LADVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + V SDGR RG QFYGA+RTGR+SG Q QNLP+ + +++ Sbjct: 294 VRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + D S +R+ I VAD + IEARV+AW AGE W+ + F Sbjct: 354 DFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEK 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLNEEELPALVDAWRQANPRIVEFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 + V+ + + L + I LPS R+L Y K + Sbjct: 494 AVDRAVMEAVKYKHTTTDYG------LTFSCKSGMLFITLPSGRKLAYVKPKIGTNKFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA +RDILC MK IV+ +HDE+V Sbjct: 548 SCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDELV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 606 IEA--DPKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645 >gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 212/702 (30%), Positives = 319/702 (45%), Gaps = 81/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L Y+ D VK+ D +P +++ Sbjct: 1 MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D++V+ A N+ FERI K LG+ + K W CT + A T GLP SL+ Sbjct: 61 NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170 L F K+ +GK LI FC + + +H + W++F Y KRDVE Sbjct: 121 VLGFK--KQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +L P+S E + LDQ IND G +D+D V + + + + + +LT Sbjct: 179 MAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L+ +L L G+ +S+ + +L S+ + + R + S+ Sbjct: 239 GLE--NPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDG--EIHEALSIRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K ++ V SD R RG +QFYGA+RTGR+SG + Q QNLP+ + +++ Sbjct: 294 VKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + S+ +R+ I G + +VAD + IEARV+AW+AGE W+I FA Sbjct: 354 NFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAG 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ FN P+ K + R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L+ + + AWR + + LW Sbjct: 464 ------------------------------AIQMGLVEDELKPIVDAWRNSNPNITSLWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 + + ++ + + + + I LPS RRL Y + Sbjct: 494 RIDRAVK------TVVKTKQPIEIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQAISRDIL E M + + IV+ VHDE+V Sbjct: 548 ESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVV 607 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P SV +C +M++ P+WAKGL L A+GYE + Y+K Sbjct: 608 IEAP-NKVSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648 >gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] Length = 645 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 209/698 (29%), Positives = 324/698 (46%), Gaps = 80/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YA + L Y D V++ D +P +++ Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V A N++FER+ LG + + W CT V + T GLP SL++A AL Sbjct: 64 SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SEHLTKMEEGKALIARFCK---GSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 K+ EGK LI FC + + R + + W+ F Y RDVE ++ Sbjct: 124 E--KQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVETEMQIQ 181 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ D + + LDQ INDRG +D++LV + + A+ R++L + + +LT + Sbjct: 182 KRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQELTG--L 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + + ++ + + K ++ R + S++ K Sbjct: 240 DNPNSVQQMKQWLADH-GLETDTLGKKVVAELVRSA--PEPLKTVLSLRQQLAKSSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV +DGR G QFYGA+RTGR+SG + Q QNLP+ S+ + + E Sbjct: 297 AAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMRGGNYEA 356 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 D S +R+ + +G+K +VAD + IEARV+AW AGE W++K F +G+DI Sbjct: 357 ISMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGDDI 416 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F+ P++K + R GK+ ELALGY G K+M Sbjct: 417 YSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A++ L + + AWR + + Q W D+ Sbjct: 463 --------------------------ALEMGLAEEELQPLVDAWRTSNPMITQFWWDVDR 496 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--------DCS 578 V++ + L + I LPS RRL Y + + Sbjct: 497 AVKECVKKRVPME------SHGLHFDYRSAMLFITLPSGRRLAYVKPRIGENQFGRESVT 550 Query: 579 YLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 Y+ + + R +YG K ENIVQ +RDILC M+ IV VHDEI+ E Sbjct: 551 YMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMRTL--RNCAIVAHVHDEIIIEA- 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ +C M + PSWAKGL L+A+GYE + Y+K Sbjct: 608 -DRRMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644 >gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255] Length = 652 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 220/700 (31%), Positives = 331/700 (47%), Gaps = 74/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATRELF 174 +E KM+EGKALI FCK + N ++ W F EYCK+DV RE+ Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L ++ E LW LDQ IND G ++D +L+ E + +KL ++ +K+T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L ++ +++ ++ IL + + + L R S ++I K Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDENVVRTL-ELRKLMSKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + + Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G + +V+D + IEARV+AW+AGE W++ F + I Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417 Query: 409 YVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI+ K E R GK+ EL+ GY G +M + Sbjct: 418 YEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIK----------- 466 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + AWR + + + W D+ + Sbjct: 467 -----------------------------MGLKEEELQPIVTAWRNANPNITKFWWDVDK 497 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578 +++ + + + + + I LPSSRRL Y K + Sbjct: 498 AAKKAIKDRTIVEIQ-----HGIKFIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552 Query: 579 ---YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + Q R TYG KL ENIVQA +RD L E M N T GY IV+ VHDE+V + Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] Length = 645 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 203/698 (29%), Positives = 314/698 (44%), Gaps = 80/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YA + L YA D V + D +P + + Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V N++ ER+ LG + + W CT V + T GLP SL++A AL Sbjct: 64 SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K+ EGK LI FC + + R H + W+ F Y RDVE ++ Sbjct: 124 E--KQKLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQ 181 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ D + + LDQ INDRG +D++LV + + + R++L + + + Sbjct: 182 KRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRE--LTEL 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + + ++ + + ++++ R + S++ K Sbjct: 240 ENPNSAQQMKQWLADH-GLETDTLGKKAVAELVKTA--PEPLREVLSLRQQLAKSSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV +D R G QFYGA+RTGR+SG + Q QNLP+ + + + E Sbjct: 297 TAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEA 356 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 D S +R+ + +G+K +VAD + IEARV+AW AGE W++K F +G DI Sbjct: 357 LSVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDI 416 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F+ P++K + R GK+ ELALGY G K+M Sbjct: 417 YCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A++ L + + AWR + + Q W D+ Sbjct: 463 --------------------------ALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDR 496 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--------DCS 578 +++ L + I LPS RRL Y + + Sbjct: 497 AVKDCIRQRIPTET------HGLRFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVT 550 Query: 579 YLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 Y+ + T + R +YG K ENIVQ +RDILC M+ IV VHDEI+ E Sbjct: 551 YMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQTL--KNCSIVAHVHDEIIIEA- 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +C M + P WAKGL L+A+GYE + Y+K Sbjct: 608 -DRRMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644 >gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] Length = 645 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 318/700 (45%), Gaps = 81/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ Y+E I L AY+ D PV++ D +P+++L Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L DETV+ A N+ FER+ + LG+D + + W CT V T GLP SL L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K+ EGK LI FC + + +H W F Y RDVE Sbjct: 121 GL--DKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ D + LDQ INDRG ID D V +L + L++ + +LT Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTGL 238 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + +R +L G++ + + + +L L + L+L R + S++ Sbjct: 239 E--NPNSVLQMRGWLLDH-GLETESLGKKAVAELLEQPIDENLKQVLVL-RQQLAKSSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + SD R RG QFYGA+RTGR++G Q QNLP+ S+ +++ + Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNF 354 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + + S+ +R+ + G K +V+D + IEARV+AW++GE W+ + F NG Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM------------- 461 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ L + + +WR + + +LW + Sbjct: 462 ---------------------------DALEMGLTEDELQPLVNSWRDSNINITELWWAV 494 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 + V+E S S + + I L S R+LVY K + Sbjct: 495 DKAVKTCVKERRSTST------HGIKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 AT + R +YG K ENIVQAI+RDILC M+N Y IV VHDE++ E Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENL--RKYRIVGHVHDEVIIE 606 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P V +C LM++ P WA+GL L A+GYE + Y+K Sbjct: 607 VPMES--KVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644 >gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 646 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 210/702 (29%), Positives = 314/702 (44%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S +PL K GV+ Y E I L AY+ D +PV++ D +P ++L Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DE V+ A N+ FERI + LG + + W C+ V A T GLP SL+ Sbjct: 61 LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L K+ EGK LI FC+ + + R H W +F +Y RDVE Sbjct: 121 VLGLE--KQKLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +RL P+ D + +DQ INDRG R+D++LV E+ + R KL E + + Sbjct: 179 MGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKE-- 236 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L + ++ R + S+ Sbjct: 237 ITELENPNSVQQMKAWLSD-NGLETDTLGKKAVAELLKSA--PPKLSQVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + V +DGR RG QFYGA+RTGR+SG Q QNLP+ S+ +++ Sbjct: 294 VRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E D S +R+ I G + +VAD + IEAR++AW AGE W+ FA Sbjct: 354 NFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLTEDELPPLVDAWRQSNPNIVKFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 ++ V+ + S L + I LPS R+L Y K + Sbjct: 494 NVDHAVMEAVKFKHTTSEYG------LTFSCRSGMLFITLPSGRKLAYVKPKIGTNKFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +T + R +YG K ENIVQA +RDILC M+ IV+ +HDE+V Sbjct: 548 QCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQTL--RCCSIVMHIHDEVV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 606 IEADPS--MSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 675 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 492/675 (72%), Positives = 567/675 (84%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T MPSDLL++ Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 LTKMEEGKALIARFCKGSI+ PYD RANHVQAWQLFGEYCKRDVEATREL+KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER++LDE+ +LT G+I S+R+T Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L YLFL TG+DL DM+E T+ + LS +I QL+K ++ NRL+SS SAILKLNTLS AVS Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D RLRGTLQF+GASRTGRWSGCVFQPQNLPRQ + + + + I+ L+ G I DPL A Sbjct: 301 PDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIAS GKKL+VADLAGIEARVLAW+AGE WK+ AFANGEDIY T Y+KAFN P Sbjct: 361 SDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+K+QRAIGKVMELALGYQGGA+VF+ MAS GL+LQQFS+++K+T+T EDWEQA+ Sbjct: 421 LSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQR 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 LWMQ+ +PEFAV D IGTACELVK+AWRAKH+GV+QLWKD E F CV+++G SISA Sbjct: 481 RCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRV VP L+M++ ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN Sbjct: 541 RRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDIL GM NATK GYDIVLTVHDEIV E PDTP FS LCSLMT+NP+WAKG Sbjct: 601 IVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEA RYRK Sbjct: 661 LPLKAEGYEAVRYRK 675 >gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 652 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 210/699 (30%), Positives = 323/699 (46%), Gaps = 75/699 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S L K GV+ Y E I L AYA+DDEP+ + D + +P + + Sbjct: 3 KILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTK 62 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D V+ A+N+ FER K +P ++W CTSV A T GLP +L L Sbjct: 63 DLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLD 122 Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175 K GK LI F CK + + +H W+ F +YCK+DV R + K Sbjct: 123 AQ--KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRK 180 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ P+ + E LW LDQ IND G R+D LV + + Q +LD + +LT + Sbjct: 181 KIEKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG--LD 238 Query: 234 SSRQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L ++L G+ + + + + +L + + ++ R S ++ K Sbjct: 239 NPNSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A+ SD R RG LQF GA+RT RW+G + Q QNLP+ + + + + + + E Sbjct: 298 EAMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEA 357 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 P + S +R+ I S+G + +V+D + IEARV+AW+AGE W++K F + I Sbjct: 358 IELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKI 417 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F+ PI++++K R GK+ ELALGY G + M Sbjct: 418 YEASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMG-------------- 463 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+K L + AWR + +++LW D+ + Sbjct: 464 --------------------------ALKMGLDADELPDLVTAWRNSNPKIVKLWWDVDK 497 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E + + + + I LPS R+L Y K Sbjct: 498 AAMTAVREHMPVRIQYG-----ITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALT 552 Query: 585 --------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 R TYG KL ENIVQA++RD L M GYDI + VHDE++ + Sbjct: 553 YEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDV 612 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P+T ++ + +M++ WA GLPL+A+GYE + Y+K Sbjct: 613 PNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651 >gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] Length = 646 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 210/696 (30%), Positives = 329/696 (47%), Gaps = 77/696 (11%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 L IDIET S L K GV+AYA+ + L AY++D ++ D + +P ++ Sbjct: 4 ILEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAA 63 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + D+ VM A N+ FER K G + + W C++V A LP SL+ L + Sbjct: 64 IFDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQ 123 Query: 121 HLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKR 176 KM+EGK LI F CK + + H + W+LF YC RDV+ +E+ ++ Sbjct: 124 Q--KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRK 181 Query: 177 L--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L P+ + E +L+ LDQ INDRG +D +LV + + + + +LT + Sbjct: 182 LQHFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTGLE--N 239 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 ++ +L G+++ +S+ T+ ++ S+ ++L+ RL + +++ K Sbjct: 240 PNSVAQIKSWLGE-NGVEMESLSKKTVAGLIEESDG--EVQELLRLRLLMAKTSVKKYEA 296 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET-- 352 + +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + + + R E Sbjct: 297 MERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVE 356 Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 + S+ +R+ I G + VVAD + IEARVLAW++GE W+++ FA+ IY Sbjct: 357 LLYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIYE 416 Query: 411 TTYAKAFNTPIDKVSKEQR--AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + + F+ PI++V+K GK+ ELALGY G +M Sbjct: 417 ASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMG---------------- 460 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 A+ L+ + AWR+ + + Q W D+ Sbjct: 461 ------------------------ALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAA 496 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN------- 581 V E A R +V + + LPS R+L Y + + Sbjct: 497 VKAVTEKKKTRAGR------IVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYE 550 Query: 582 --TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + R TYG KL ENIVQ +RD+L E M + GY IV+ HDEI++E P+ Sbjct: 551 GIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVPEG 610 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +C++M P WA GLPL+A+GYE Y+K Sbjct: 611 T-GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645 >gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] Length = 650 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 217/700 (31%), Positives = 316/700 (45%), Gaps = 76/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L IDIET S L K GV+AYAE I L YA+DDEPV+L D +P ++L Sbjct: 1 MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER K +P ++W CT V A T GLP L + L Sbjct: 61 NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 + K GKALI F CK + + + W F YCK+DV R++ Sbjct: 121 KQQ--KDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K L P+ + E LW LDQ IND G +D LV Q + KL KLT + Sbjct: 179 KTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + L+ +L G+++ +++ ++ +L + + K ++ R + +++ K Sbjct: 237 DNPKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESST-VKQMLELRQEMAKTSVKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A DGR+RG LQFYGA+RTGRW+G + Q QNLPR + + + E Sbjct: 296 LAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEM 355 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ + G + +VAD + IEARV+AW+A E W++ F I Sbjct: 356 LELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F+ PI++++K R GKV ELALGYQGG M Sbjct: 416 YEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG-------------- 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+K+ L + K WR +++ W D Sbjct: 462 --------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEA 495 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580 V+E ++ + + I LPS RRL Y + + Sbjct: 496 AAIKAVKEKTTVELH-----HGIHFIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPAL 550 Query: 581 -----NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T Q R TYGGKL ENIVQA++RD L E + GY V+ VHDE V E Sbjct: 551 TYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVME 610 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P S+ C +M + WA GLP++A+G+E+ Y+K Sbjct: 611 MPHG-VGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649 >gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] Length = 646 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 210/702 (29%), Positives = 316/702 (45%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S +PL K GV+ Y E I L AY+ D + V++ D +P ++L Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L +ETV+ A N+ FERI + LG + S+ W C+ + A T GLP SL+ Sbjct: 61 LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L K+ EGK LI FC+ + + R H W +F +Y RDVE Sbjct: 121 VLGLE--KQKLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +RL P+ D + +DQ INDRG R+D++LV E+ + R +L E + + Sbjct: 179 MGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKE-- 236 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L ++ ++ R + S+ Sbjct: 237 ITELENPNSVQQMKAWLSD-NGLETDTLGKKAVTELLKSASPK--LSQVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + V +DGR RG QFYGA+RTGR+SG Q QNLP+ + +++ Sbjct: 294 VRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E D S +R+ I G + +VAD + IEARV+AW AGE W+ + FA Sbjct: 354 NFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLTEEELPPLVDAWRQSNPNIVKFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 ++ V+ + S+ L + I LPS R+L Y K + Sbjct: 494 NVDHAVMEAVKFKHTTSSYG------LTFSCRSGMLFITLPSGRKLAYVKPKLGTNKFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA +RDILC MK IV+ +HDE+V Sbjct: 548 QCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMKTL--RCCSIVMHIHDEVV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 606 IEA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 662 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 203/718 (28%), Positives = 308/718 (42%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L YA D PV++ D + ++P ++L Sbjct: 1 MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98 L D+TV A N+ FER+ + L + W C+ V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCT-RANHVQ 154 + GLP SL+ LN KM+EG+ LI FC K + + + + Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCIPCKETKANGGRTRNLPQHALD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W LF Y KRDVE + +RL P+ + + LDQ INDRG IDL+L + L Sbjct: 179 KWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVAL 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 A+ R+ L + + T + + +L G+ + + ++ +L + Sbjct: 239 DAKSRESLMAALKERTGLE--NPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEP- 294 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++L R + S++ K + DGR RG QFYGA+RTGR++G Q QNLP+ Sbjct: 295 -LRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + S +R+ + G K VV+D + IEARV Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAK 446 ++W+AGE WK + FA G+DIY +T ++ F P ++ R GK+ ELA GY G Sbjct: 414 ISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A+ + + Sbjct: 474 ALKAMG----------------------------------------ALDMGIPEEELGNL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 ++WR+ + ++ W + +++ + V + + I LPS R Sbjct: 494 VQSWRSANPHIVDFWWQVDGAVKTTIKQRIPV------WVNNIRFFCQSGMLFIELPSGR 547 Query: 567 RLVYSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RL Y + + AT + + +YG K ENIVQ ISRDILC M+ Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQTL 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E P SV +C M + P WA+GL L+A+GY + Y+K Sbjct: 608 --RCCAIVGHVHDELIIECPKDT--SVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661 >gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] Length = 646 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 208/702 (29%), Positives = 313/702 (44%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D V++ D A+PS ++ Sbjct: 1 MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V A N+ FERI K LG+ + W CT V + GLP SL+ Sbjct: 61 DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120 Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEAT 170 L K+ EGK LI F CK ++ + + W F Y RDVE Sbjct: 121 VLGLE--KQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L P+ +G + LDQ INDRG +D+DLV + E+ + R KL I + Sbjct: 179 MAIQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRE-- 236 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L ++ ++ R + + S+ Sbjct: 237 LTELENPNSVVQMKQWLSDH-GLETDTLGKKAVVELLKTASEP--LGKVLELRQSLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + V +DGR RG QFYGA+RTGRW+G + Q QNLP+ + +++ Sbjct: 294 VKKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + S+ +R+ + G K +VAD + IEARV+AW+AGE W+ + F + Sbjct: 354 NFAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFES 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F+ P++K + R GK+ ELALGY G K M + ++ Sbjct: 414 GGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 473 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + AWR+ + +++LW Sbjct: 474 L----------------------------------------QPLVSAWRSSNPKIVRLWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ V+E + + I LPS RRL Y + + + Sbjct: 494 DIDRAAMKAVRERTTTETHGIR------FSYQSGMFFITLPSGRRLAYVKPRIGQNRFGS 547 Query: 583 ---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + R +YG KLTENIVQA SRDILC M+N IV+ VHDEIV Sbjct: 548 DCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNL--RHCSIVMHVHDEIV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E S +C M + P WAKGL L+A+GYE Y+K Sbjct: 606 IEA--DRRMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645 >gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26] gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55] gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34] gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79] gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291] gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58] gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291] Length = 652 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 218/700 (31%), Positives = 326/700 (46%), Gaps = 74/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATRELF 174 +E KM+EGKALI FCK + N ++ W F EYCK+DV RE+ Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L ++ E LW LDQ IND G ++D +L+ E + +KL ++ +K+T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G ++ +++ ++ IL + + + ++ R S ++I K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVR-ILELRKLMSKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + + Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G + +V+D + IEARV+AW AGE W++ F + I Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGKI 417 Query: 409 YVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F PI+ K R GK+ ELALGY G +M + + L + Sbjct: 418 YEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIK-MGLDEEELQP 476 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 T+ W D+ + Sbjct: 477 LVTTWRNANPNITKF---------------------------------------WWDVDK 497 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578 +++ + + + + + I LPS RRL Y K + Sbjct: 498 AAKKAIKDRTIVKLQ-----HGIKFIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDKI 552 Query: 579 ---YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + Q R TYG KL ENIVQA +RD L E M N T GY IV+ VHDE+V + Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016] gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 644 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 206/700 (29%), Positives = 314/700 (44%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ + IDIET S L K GV+ YAE I L Y+ D V++ D +P++++ Sbjct: 1 MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D +V A N++FER+ K L + + W C+ V + GLP SL+ L Sbjct: 61 NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K+ EGK LI FC + + + W+ F Y RDVEA Sbjct: 121 GLE--KQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMS 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +RL P+ + + LDQ INDRG ID+ V + ++ Q R+KL + +T+ Sbjct: 179 IQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITNL 238 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + ++ +L G++ + + + +L + + ++ R + S+I Sbjct: 239 E--NPNSIQQMKEWLAD-NGLETDSLGKKAVAEMLKTA--PEPLGTVLELRQQLAKSSIK 293 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV +DGR RG QFYGA+RTGR+SG + Q QNLP+ + + + Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + S+ +R+ + G K +VAD + IEARV+AW+AGE W+I F NG Sbjct: 354 DALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ FN P++K + R GK+ ELALGY G K+M Sbjct: 414 DIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ + + + AWR + + +LW D+ Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 V++ + + IVLPS RRL Y + + Sbjct: 494 DHAVKTCVKQKIPTET------HGIKFIYQSGMLFIVLPSGRRLSYVKPRMGENVFGGES 547 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAISRDILC M+ IV VHDEI+ E Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIE 605 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+C M + P+WA GL L A+GYE + Y+K Sbjct: 606 A--DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus] Length = 675 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLS- 119 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 120 -SQKMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-ETIADPLG 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 Query: 659 KGLPLKAEGYEAKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYESKRYRK 675 >gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 644 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 201/700 (28%), Positives = 308/700 (44%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ + IDIET S L K GV+ YAE I L Y+ D V++ D +P +++ Sbjct: 1 MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D++V A N++FER+ K L + + W C+ + + GLP SL+ L Sbjct: 61 NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K+ EGK LI FC + + + W+ F Y RDVEA Sbjct: 121 GLE--KQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMS 178 Query: 173 LFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +R + + + LDQ INDRG ID+ V + + R+KL + +T+ Sbjct: 179 IQQRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITNL 238 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + ++ +L G++ + + + +L + + ++ R + S++ Sbjct: 239 E--NPNSVQQMKDWLAD-NGLETDTLGKKAVAEMLKTA--PEPLGTVLELRQQLAKSSVK 293 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV +DGR RG QFYGA+RTGR+SG + Q QNLP+ + + + Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + S+ +R+ I G K +VAD + IEARV+AW+AGE W+I F NG Sbjct: 354 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ FN P++K + R GK+ ELALGY G K+M Sbjct: 414 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ + + + AWR + + +LW D+ Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 V++ + + I LPS RRL Y + + Sbjct: 494 DRAVKTCVKQKTPTET------HGIKFIYQSGMLFIALPSGRRLAYVKPRMGENMFGGES 547 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAISRDILC M+ IV VHDEI+ E Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIE 605 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ +C M K P+WA GL L A+GYE + Y+K Sbjct: 606 ADMGT--SLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 225/700 (32%), Positives = 330/700 (47%), Gaps = 77/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY+E I L AYA DDE V++ D +P+++L Sbjct: 1 MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + D TV+ A+N+ FER K I +P ++W CTSV A GLP L L Sbjct: 61 KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174 KM+EGKALI F CK + + + W F +YCK+DVE RE+ Sbjct: 121 QGQ--KMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L PL E++LW LDQ IND G ID +LV + + +L E+ + + Sbjct: 179 KKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEA--VRLTGL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L L G+++ +++ +++++S K L+ R A S +++ K Sbjct: 237 ENPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVENP-EVKRLLELRRAMSKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V SD R+RG LQFYGASRTGRW+G + Q NLPR + + + + + E Sbjct: 295 EAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEA 354 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G + VVAD + IEARV+AW+AGE W++ F + I Sbjct: 355 LEVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F PI+ + K R GK+ ELALGY G M Sbjct: 415 YEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A++ L + AWR + +++LW + Sbjct: 461 --------------------------ALEMGLTEDELPELVSAWREANPKIVKLWWGIEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E + + L K + I LPS R L Y K Sbjct: 495 AAIKAVKEKAVVKMQ-----HGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQL 549 Query: 578 SYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y T + Q R TYGGKLTENI+QAI+RD L M + GY I VHDE++ + Sbjct: 550 TYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILD 609 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P S+ + ++M ++ WA GLPL A+ +E Y+K Sbjct: 610 VPI-ATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648 >gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 662 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 214/718 (29%), Positives = 319/718 (44%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L YA D V++ D + +P +++ Sbjct: 1 MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKT---LGID-----------------IPSKRWICTSV 98 L D+ V A N+ FER+ + LG+ + + W C+ V Sbjct: 61 DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQ 154 A T GLP SLK L + KM+EGKALI F C + + H + Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQ--KMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPE 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W+ F Y KRDVE + +RL P+ D D + +DQ INDRG R+D+DLV K E+ Sbjct: 179 KWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLVAKAIEM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L + + + ++ +L G++ + + + ++ + Sbjct: 239 DTRSRTELTTAMKD--ITELDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKTA--PS 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++ R + S++ K T+ AV DGR RG FYGA+RTGRW+G + Q QNLP+ Sbjct: 294 ELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + + D S +R+ I +G +L V+D + IEARV Sbjct: 354 NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446 +AW AGE W+ K FA+G DIY + ++ F+ P++K + R GK+ ELALGY G Sbjct: 414 IAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + +++ W D+ V+ + S+ L + I LPS R Sbjct: 494 VDAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYG------LTFSCRSGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + AT + R +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +IV+ +HDE+V E P+ S+ LC M + P WA+GL L+A+GY Y+K Sbjct: 608 --RNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTTPFYKK 661 >gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6] gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6] Length = 645 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 208/700 (29%), Positives = 321/700 (45%), Gaps = 81/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIE+ S + K G + Y+E I L AY+ D +PV++ D + +P D++ Sbjct: 1 MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L DETV+ A N+ FER+ + LG++ + + W CT V A T GLP SL L Sbjct: 61 KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K+ EGK L+ FC + + H + W+ F Y RDVE Sbjct: 121 GL--DKQKLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P++ + + LDQ INDRG ID+ L L + +++E + KLT Sbjct: 179 IQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTGL 238 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + +R +L G+++ + + +K ++ +N +L K+++L R + S++ Sbjct: 239 E--NPNSVLQMRSWLSQH-GLEVESLGKAAVKELIEQTNDDKL-KEVLLLRQQLAKSSVR 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + D R RG QFYGA+RTGR++G Q QNLP+ S+ + + Sbjct: 295 KYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEY 354 Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + + S+ +R+ I G K +V+D + IEARV+AW+AGE W+ + F NG Sbjct: 355 ELLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGG 414 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ F P++K + R GK+ ELALGY G M Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMG------------ 462 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A+ L + + +WR + + +LW D+ Sbjct: 463 ----------------------------ALNMGLTEDELQPLVASWRETNPAITKLWWDI 494 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA- 583 V G + + I L S RRL Y + + A Sbjct: 495 DSAAKGCVSVGAKTET------HGITFEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAA 548 Query: 584 --------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQA++RDILC M+N Y IV VHDE++ E Sbjct: 549 VTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNL--KDYRIVGHVHDEVIIE 606 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P +V + S+M++ P+WAKGL L A+GYE Y+K Sbjct: 607 VPKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644 >gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 673 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 499/675 (73%), Positives = 564/675 (83%), Gaps = 2/675 (0%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T MPSDLL++ Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 LTKMEEGKALIARFCKGSI+ PYD RANHVQAWQLFGEYCKRDVEATREL+KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER+KLDE++ LT G+I SSR+T Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L YLFL G+DL DM+E T+ + LS NITQ AKD++ NRL+SS SAILKLNTLS AVS Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D RLRGTLQFYGASRTGRWSGCVFQPQNLPR S E + + I++ N DPL A Sbjct: 301 PDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSN--FPSDDPLRFA 358 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIAS GKKLVVADLAGIEARVLAWIAGE WK+ AFANGEDIY T Y+KAFN P Sbjct: 359 SDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIP 418 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+K+QRAIGKVMELALGYQGGA+VF+TMAS+ GLDL+QFS+++K T+T +DWEQA+ Sbjct: 419 LSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQR 478 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 LWMQ+ YPEFAV D IGTACELVK AWRAKH+GV+QLWKD E F CV+++G SISA Sbjct: 479 RCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 538 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVA VP L+M++ ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN Sbjct: 539 RRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 598 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDIL GM NAT+ GYDIVLTVHDEIV ETPDTP FS LC LMT+NP WAKG Sbjct: 599 IVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKG 658 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEA RYRK Sbjct: 659 LPLKAEGYEALRYRK 673 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 219/698 (31%), Positives = 332/698 (47%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M KL ID+ET S L K GV+ YAE I L AY+ +D VK+ D +P ++L Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DE V A N+ FER+ + LG + + W CT + + GLP SL+ L Sbjct: 61 SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 KM EGKALI F CK + + ++H ++ W F EY +RDVE + Sbjct: 121 --DKQKMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+S E + + +DQ INDRG ID LV + R++ + ++LT Sbjct: 179 KKLSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +++ ++S L ++ K+++ R S S++ K Sbjct: 238 -NPNSPLQLKEWLNKK-GLEIDSLAKKDVESALKNTEGD--IKEVLELRQELSKSSVRKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + D R RG +QFYGA+RTGR+SG + Q QNL R + L +++ ET Sbjct: 294 DAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 P + S +R+ IA G + +++D + IEARVLAW+AGE W + AF NGEDI Sbjct: 354 MEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T ++ F P++K + R GK+ LA GYQG K M Sbjct: 414 YCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 ++ L + + +WR + ++ LW D+ Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 VV+ R LV+ K + I LPS RRL Y K + + Sbjct: 494 VVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIV 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ + +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V E+ Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIESD 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + +M+ PSWA GL L A+G+E++ Y+K Sbjct: 608 SSSIE---EINQIMSLVPSWAPGLILDADGFESEFYKK 642 >gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 662 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 202/718 (28%), Positives = 297/718 (41%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L YA D V++ D +P D+L Sbjct: 1 MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98 L DE+V A N+ FER+ + L + W C+ + Sbjct: 61 DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154 + GLP SL+ A L KM+EGK LI FC ++ + Sbjct: 121 WSAYMGLPLSLEGAGAVLKL--DSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W LF Y KRDVE + +RL P+ + D + LDQ INDRG ID L + Sbjct: 179 KWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVI 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 A+ R L + T + + +L G+ + + ++ +L + Sbjct: 239 DARSRDSLMAVLKGKTGLE--NPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP- 294 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++L R + S++ K + D R RG QFYGA+RTGR++G Q QNLP+ Sbjct: 295 -LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + S +R+ + G K VV+D + IEARV Sbjct: 354 NHLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446 L+W+AGE W++ FA DIY + + F P++K + R GK+ ELALGY G Sbjct: 414 LSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A+ L + Sbjct: 474 ALKAMG----------------------------------------ALDMGLTENELYPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 ++WR+ + ++ W + ++E + A + + I LPS R Sbjct: 494 VQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRA------GCIRFLCQSGMLFIQLPSGR 547 Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RL Y + + AT + R +YG K ENIVQ ISRDILC M+ Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAMQTL 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E SV +C M + P WA+GL L+A+GYE + Y+K Sbjct: 608 --RCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQK 661 >gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 647 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 201/700 (28%), Positives = 311/700 (44%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ++ L +D+ET S L K GV+ YAE I L Y+ D V++ D +P +++ Sbjct: 4 INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D++V A N++FER+ K L + + W C+ V + GLP SL+ L Sbjct: 64 NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123 Query: 117 NFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K+ EGK LI FC + + + W+ F Y RDVE+ Sbjct: 124 GLE--KQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEML 181 Query: 173 LFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +RL + + LDQ INDRG ID+ V + E+ R+KL + +T+ Sbjct: 182 IQQRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITNL 241 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + ++ +L G++ + + + +L + + ++ R + S++ Sbjct: 242 E--NPNSVQQMKDWLAD-NGLETDSLGKKVVAEMLKTA--PEPLGTVLELRQQLAKSSVK 296 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV SDGR RG QFYGA+RTGR+SG + Q QNLP+ + + + Sbjct: 297 KYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 356 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + S+ +R+ I G K +VAD + IEARV+AW+AGE W++ F G Sbjct: 357 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGG 416 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ FN P++K + R GK+ ELALGY G K+M Sbjct: 417 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMG------------ 464 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ + + + AWR + + +LW D+ Sbjct: 465 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 496 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT-- 582 V++ + + + IVLPS RRL Y + + + Sbjct: 497 DRAVKTCVKQKTPTAT------HGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550 Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAISRDILC M+ IV VHDEI+ E Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTL--KNCSIVAHVHDEIIIE 608 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ +C M K P+WA GL L A+GYE + Y+K Sbjct: 609 ADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646 >gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 192/698 (27%), Positives = 300/698 (42%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + G + YA+ + L YA D PVK+ D T+ +PS ++ Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+ E + + +DQ INDRG RID LV + + + + + Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQ--TSQQLTGL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G++ +++ ++ +L + T ++ R S S++ K Sbjct: 237 ANPNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ DG + G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G VAD + +EARV+AW++GE+W+ AFA EDI Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P ++ E R GK+ ELALGY G K M + Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK----------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + WR ++Q W D+ + Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580 ++ + + + + L S R L Y K + Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547 Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N + R TYG KL ENIVQA SRD+L M+ G +V+ +HDE V + P Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+ +MT+ P WA GL L A G+ Y+K Sbjct: 608 TDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 211/696 (30%), Positives = 332/696 (47%), Gaps = 76/696 (10%) Query: 9 ETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66 ET S L GV+ Y E I L AYA DDEPVK+ D +PS++L + + + Sbjct: 2 ETYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPAI 61 Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 + AHN++FER+ + LG + + +W C+ + A GLP+SLK+ L SE KM Sbjct: 62 IKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMR 121 Query: 127 EGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IPL 180 GK LI+ FCK + T A+ + WQLF +YC RDVE RE+ +L P+ Sbjct: 122 IGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPI 181 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E +LW DQ +ND G RID+++V + + ++L + ++T+G ++ Sbjct: 182 PASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNG--IGPKKIAQ 239 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L+ ++ + + + + +L S+I+ + ++ R S ++I K + +V Sbjct: 240 LKEWICRKEDRSIESLDKDAVIELLKDSSISPETRRVLQIRQESGKTSITKYAAIQRSVC 299 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 +D RL G LQFYGA+RTGRW+G +FQPQNLPR ++ L + + E++ G Sbjct: 300 NDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGSY 359 Query: 361 SD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 + +R+ +I NG +AD + IEAR+ AW E+W+ + FA IY + A+ Sbjct: 360 NQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQM 419 Query: 417 FNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F+ PI+ V+K + R GKV ELALGY GG + M Sbjct: 420 FHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMG---------------------- 457 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 L + + WR + ++W + + V+E Sbjct: 458 ------------------GADMGLSEDEMQDIVNKWRLASPNIKKMWYRVQDAAYTAVRE 499 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTA---- 583 +RV+ V + + LPS RRL Y K + +Y Sbjct: 500 -----RKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQD 554 Query: 584 ---TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 T + R++T+GGKL EN++QAI+RD L + M GY I++ +HDE+V E P Sbjct: 555 GKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSET 614 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S + + +M + WA GL L A+G+ ++ YRK Sbjct: 615 AESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650 >gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 646 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 208/702 (29%), Positives = 311/702 (44%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D V++ D T +PSD++ Sbjct: 1 MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DETV+ A N+ FERI + LG+ I W C+ V A T GLP SL+ Sbjct: 61 TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKRDVEAT 170 L K+ EGK LI F + + + W F +Y RD+E Sbjct: 121 VLKL--DKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L P+ D D + LDQ INDRG +D+ LV + + + R +L Sbjct: 179 MSIQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTT--AMKH 236 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L + + D++ R + S+ Sbjct: 237 LTELDNPNSVQQMKQWLAD-NGMETDTLGKKIVAELLKTAPLD--LADVLSLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV +DGR RG QF+GA+RTGRW+G + Q QNLP+ + + + Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + D S +R+ + G +L+V+D + IEARV+AW+AGE+W+ FA Sbjct: 354 DFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLEEDELPQLVDAWRQANPCIVKFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ + + +R + + + I LPS RRL Y + + Sbjct: 494 DVDKAAMEA------VRYKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547 Query: 583 ---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 AT + R +YG K ENIVQA +RDILC M+ IV+ VHDEIV Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTLQH--CSIVMHVHDEIV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + PSWAKGL L+A+GYE Y+K Sbjct: 606 IEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645 >gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4] gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Lactobacillus gasseri ATCC 33323] gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4] Length = 644 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 200/698 (28%), Positives = 312/698 (44%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + +G + W C+ V + T GLP SL + L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+S E + + +DQ INDRG RID LV + + + KLT + Sbjct: 179 QKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +S+ ++ +L + ++ R S S++ K Sbjct: 237 ANPNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQTTTGK--VHQVLSLRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR--- 349 + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNTTA 353 Query: 350 -GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G VAD + +EARV+AW++GE+W+ KAFAN EDI Sbjct: 354 LSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P V+ E R GK+ ELALGY G K M + Sbjct: 414 YCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATN----------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + WR ++Q W D+ + Sbjct: 463 -----------------------------LGLTEEELHSLVQMWRNASPHIVQFWWDIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 ++ + + + + L S R+L YS K + + + Sbjct: 494 AAKECIKSHLPQAT------HGIKFIYRSGCMFLRLRSGRKLCYSKPKIGINRFGSESIT 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R TYG KL ENIVQA SRD+L E M+ G +V+ +HDE V + P Sbjct: 548 FMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDEAVIDAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +S+ + +MT+ P WA GL L A G+ + Y+K Sbjct: 608 AN--YSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643 >gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] Length = 648 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 224/699 (32%), Positives = 329/699 (47%), Gaps = 76/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+D+EP+K+ D + A+P ++L Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K +P +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 SE K +EGKALI F CK + + H W+ F YC +DVE R + Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ E++LW LDQ INDRG RID DLV Q + L + +LT + Sbjct: 179 NRISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G+ + +++ ++ ++ ++ + + L L R + +++ K Sbjct: 237 PNPNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++ +T+ E Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S VR+ I S G + V+D + IEARV+AW+AGE W++ F I Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F P++ ++K R GKV ELALGYQGG M Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + KAWR ++ ++Q W D+ Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E + + L + + LPS RRL Y+ K + Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y + + R TYGGKL ENIVQA++RD L + GY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + S+M + WAKGLPL A+G+ Y+K Sbjct: 610 PRGKNE-LDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [butyrate-producing bacterium SM4/1] Length = 646 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 208/702 (29%), Positives = 309/702 (44%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET S QPL K GV+ Y E I L AY+ D PV+ D +PS++L Sbjct: 1 MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V A N+ FERI + LG + W C+ V A GLP SL+ A Sbjct: 61 CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L K+ EGK LI FC+ + + H W F +Y RDVE Sbjct: 121 VLGLE--KQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + RL P+ D + + LDQ INDRG +D++LV + ++ + R +L + + +LT Sbjct: 179 MSIQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L + Q + ++ R + S+ Sbjct: 239 S--LDNPNSVQQMKQWLAD-NGVETDTLGKKAVAELLKTA--PQQLQKVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV +DGR RG QFYGA+RTGRW+G + Q QNLP+ + + + Sbjct: 294 VKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + D S +R+ + +K +VAD + IEARV+AW+A E W+ FA Sbjct: 354 GFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAE 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G+DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 414 GKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + AWR + ++Q W Sbjct: 464 ------------------------------ALEMGLSEDELPALVSAWRQANPKIVQFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 + V + ++ + I LPS R L Y K + Sbjct: 494 AVDRAVMDAVTRKTTTKT------HGIIFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA SRDILC MK IV+ +HDE+V Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTL--RCCSIVMHIHDEVV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E S+ +C M + P WA GL L+A+GYE Y+K Sbjct: 606 IEA--DRRMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645 >gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] Length = 662 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 222/718 (30%), Positives = 324/718 (45%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ Y I L Y+ D PVK+ D +P D+L Sbjct: 1 MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98 L D+TV+ A N+ FER+ + L G+D + + W C+ V Sbjct: 61 DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQ 154 A T GLP SLK L ++ KM+EGKALI F C + + ++ Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQ--KMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPG 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W F +Y +RDVE + ++L P+ D D + +DQ INDRG RID+DLV K ++ Sbjct: 179 KWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L E + +T+ + ++ +L G+++ + + + ++L + Sbjct: 239 DTRSRSELTEKMQAITNLE--NPNSVQQMKQWLSD-NGMEVDSLGKKAVTALLKTA--PP 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ R + S++ K T+ AV SD R RG FYGA+RTGRW+G + Q QNLP+ Sbjct: 294 ELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E D S +R+ I +G + VAD + IEARV Sbjct: 354 NHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAK 446 +AW AGE WK AFANGEDIY +T + F+ P V+ E RA GK+ ELA GY G Sbjct: 414 IAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------ALEMGLSEDELPDI 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +WR +Q +++ W D+ + V+ + R L + I LPS R Sbjct: 494 VSSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGR------LAFFWQAGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + T + R +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKML 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 D+ + +HDE+V E P S+ TLC M + P+WA GL L+A+GY Y+K Sbjct: 608 --RHCDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661 >gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens LL3] Length = 648 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 223/699 (31%), Positives = 330/699 (47%), Gaps = 76/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+D+EP+K+ D + A+P +++ Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K +P +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 SE K +EGKALI F CK + + H W+ F YC +DVE R + Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ L E++LW LDQ INDRG RID DLV Q + L + +LT + Sbjct: 179 NRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G+ + +++ ++ ++ ++ + + L L R + +++ K Sbjct: 237 PNPNSTAQLKTWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++ +T+ E Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S VR+ I S G + V+D + IEARV+AW+AGE W++ F I Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F P++ ++K R GKV ELALGYQGG M Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + KAWR ++ ++Q W D+ Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E + + L + + LPS RRL Y+ K + Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y + + R TYGGKL ENIVQA++RD L + GY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + ++M + WAKGLPL A+G+ Y+K Sbjct: 610 PRGKNE-LDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2] gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2] Length = 648 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 218/699 (31%), Positives = 325/699 (46%), Gaps = 76/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+DD+PVK+ D + +P ++L Sbjct: 1 MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K + + +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFGEYCKRDVEATRELF 174 S K + GKALI F + + + W+ F YC +DVE R + Sbjct: 121 SAQ--KDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ + E LW LDQ INDRG RID+DLV Q + L + KLT + Sbjct: 179 NRISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G+ + +++ ++ ++ ++N + + L L R + +++ K Sbjct: 237 PNPNSTAQLKKWLEEK-GLTISSLAKDKIEELIENTNDETVHRVLRL-RQEMAKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + + + + E Sbjct: 295 LAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEA 354 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S VR+ I S G + V+D + IEARV+AW+AGE+W+++ F I Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F P++ ++K R GKV ELALGYQGG M Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + KAWR ++ +++ W D+ Sbjct: 461 --------------------------ALNMGLAEGELPELVKAWRTANKKIVKFWYDVEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577 V+E + + L + + LPS RRL Y+ K + Sbjct: 495 AAIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEAL 549 Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y + + R TYGGKL ENIVQA +RD L + GY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDV 609 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + ++M + SWAKGLPL A+G+ Y+K Sbjct: 610 PRGKNE-LDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 269/692 (38%), Positives = 373/692 (53%), Gaps = 25/692 (3%) Query: 1 MS-KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 M L++D+ET S +P+ K G +YAE I L A+A ++ V++WD T++S +P++L Q Sbjct: 1 MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D + AHNS F+R + GI I RW T V A +GLP +L C L Sbjct: 60 ALSDPNTIIYAHNSHFDRTML-NHSGIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118 Query: 120 EHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 D E + W DQ INDRG +D+ L E + E+K+L + LTD ++++ Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL ++ G+DL DM + TL+ ++ +I ++L+ RL SS ++ K L Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLRELLAIRLQSSTTSTSKYKALM 298 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353 VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR + + + I+AL G Sbjct: 299 NGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIY 358 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI----- 408 D + L S +R CI+A GKKLVV+DL+ IE R+LAW+AGE WKI AF+ + Sbjct: 359 DDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADL 418 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YA+AFN + V K R IGKVMEL LGY GG F T A LDL + ++ Sbjct: 419 YKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALP 478 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + A S + + + + + + T C+ +K+ WR H + W +L + Sbjct: 479 NIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDTV 537 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL-----NTA 583 + G R +L +RR K + IVLPS R + Y + D + N Sbjct: 538 RHAISSPGITFPCR-----KLKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNPY 592 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 + + R +TYGGKL EN+ QA +RD+L M +GYDIVLTVHDE+++E PD P F+ Sbjct: 593 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAFN 652 Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L L+ NP WA LPL A G+EA YRK Sbjct: 653 HEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684 >gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] Length = 662 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 210/718 (29%), Positives = 311/718 (43%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D VK+ D + +P +L+ Sbjct: 1 MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKT---LGIDIPS-----------------KRWICTSV 98 L D++++ A N+ FER+ + LGI + + W C+ V Sbjct: 61 DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQ 154 A T GLP SL+ L K+ EGK LI F C + + R H + Sbjct: 121 WAATMGLPLSLEGVGSVLGLE--KQKLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPE 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W F Y RDVE + RL P+ + + +DQ INDRG RID+DLV + E+ Sbjct: 179 KWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L I K + + ++ +L G++ + + + ++ + Sbjct: 239 DTRSRTELTSAIKK--MTDLENPNSVQQMKQWLSN-NGLETDSLGKKVVAELIKTA--PP 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 ++++ R + S++ K T+ AV DGR RG FYGA+RTGRW+G + Q QNLP+ Sbjct: 294 ELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + + D S +R+ I + + V+D + IEARV Sbjct: 354 NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446 +AW AGE W+ K FA G DIY + ++ F+ P++K + R GK+ ELALGY G Sbjct: 414 IAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + +++ W D+ V+ + S L + I LPS R Sbjct: 494 VDAWRQTNPNIVKFWWDVDRAVMEAVKHKHTTS------CYGLTFSCRSGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + T + R +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMKTL 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +IV+ +HDE+V E P S+ LC M + P WA+GL L+A+GY Y+K Sbjct: 608 --RNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661 >gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] Length = 644 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 198/698 (28%), Positives = 328/698 (46%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP K+ D MP +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D++V+ A N+ FER + G+ + + W CT+V A LP SL+ ALN Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 KM EGK LI F CK + + ++ + W+LF YC RDV+ +++ Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ D E++L+ +DQ INDRG +D +L+ ++ + +++ Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI++ +++ ++ ++ + +++ RL+ S +++ K Sbjct: 238 -NPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEKTEG--EVSEMMKLRLSMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L ++I R + Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F I Sbjct: 354 VELLYDSTPEVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T +K F+ PI++++K KV LA Y G +M + ++ + Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------ 467 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + ++WR + ++ W ++ Sbjct: 468 -----------------------------------ELKGLVQSWRTANPHIVNYWYEIDG 492 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E + V R+ + + I LPS R L Y + + + + Sbjct: 493 AVKAAVKERKMTT------VGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R +YG K ENIVQA +RD+L E M K G+DIV +HDE+V E P Sbjct: 547 YEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 607 EGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium siraeum V10Sc8a] Length = 660 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 203/716 (28%), Positives = 311/716 (43%), Gaps = 98/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D PV++ D +P +++ Sbjct: 1 MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 L ++ V A N+ FERI + L G + W CT + + Sbjct: 61 AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG----SIDSPPYDCTRANHVQAW 156 GLP SL+ L K+ EGK LI FC+ +S N W Sbjct: 121 AYMGLPLSLEGVGAVLGLG--KQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKW 178 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 F Y RDVE + ++L P+ D + + LDQ INDRG +D+DLV + ++ Sbjct: 179 ASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDT 238 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + R +L + K + + ++ +L G+++ + + + +L + Sbjct: 239 RSRAELTAAMKK--LTALDNPNSVQQMKQWLSD-NGLNVDSLGKKEVAEMLKTA--PAEL 293 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + ++L R + S++ K + +AV +DGR RG QFYGA+RTGRW+G + Q QNLP+ Sbjct: 294 QQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNH 353 Query: 335 RSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + + + + D S +R+ + G K +V+D + IEARVLA Sbjct: 354 LPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLA 413 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVF 448 W AGE W+ + F G DIY + ++ F P++K + R GK+ ELALGY G Sbjct: 414 WFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 473 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K M A++ L + + Sbjct: 474 KAMG----------------------------------------ALEMGLSEGELQPLVT 493 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 AWR +Q +++ W D+ V+ + + + + I LPS RRL Sbjct: 494 AWRNSNQNIVKFWWDIDRAAMNAVK------YHMDSEICGIKFSYKSGMLFITLPSGRRL 547 Query: 569 VYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K + T + R TYG KL ENIVQA SRDILC M+ Sbjct: 548 SYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMRTL-- 605 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + I + +HDE+V E ++ ++C M + P+WA GL L+A+GYE Y+K Sbjct: 606 SHCFITMHIHDELVIEASLG--VNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659 >gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] Length = 640 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 215/694 (30%), Positives = 312/694 (44%), Gaps = 74/694 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET SP L K GV+ Y I L +YA D V+ D +P +L Sbjct: 1 MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A+N+ FER LG + W C+ V A T GLP SLK+ LN Sbjct: 61 DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 KM+EGK LI FC +S ++ W+LF Y RDVE + ++L Sbjct: 121 DAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLA 176 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 P+ D + + +DQ INDRG RID L + + R + KLT + + Sbjct: 177 DFPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPA 234 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L+ +L G + M++ ++ L+++ ++ + R S S++ K + Sbjct: 235 SPLQLQEWLNQH-GCPIESMAKESVDDALANATGQ--VREALELRQELSRSSVAKYRKMI 291 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---- 352 + +D R G LQFYGA+RTGRW+G + Q QNLPR + + + GET Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 + S +R+ I S + +VAD + IEARVLAW+AGE+ + AF NGED+Y T Sbjct: 352 YSSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCAT 411 Query: 413 YAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P++K + E R GK+ LA GY G K M Sbjct: 412 ASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------------------ 453 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A+K L + + AWR + ++QLW + Sbjct: 454 ----------------------ALKMGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATR 491 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------ 584 + G ++ R L + + I LPS RRL Y + + Sbjct: 492 AISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQ 545 Query: 585 ---SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + + TYGGKL ENIVQA +RD+L E + G+ IV+ +HDE+V + P Sbjct: 546 GVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEPINSG 605 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V +C+LM + P WA+GLP+ A GYE Y+K Sbjct: 606 TTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639 >gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 663 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 202/714 (28%), Positives = 311/714 (43%), Gaps = 98/714 (13%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 L IDIET S L K GV+ Y+E + + L AY+ D V + D ++P ++LQ Sbjct: 6 TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65 Query: 61 LRDETVMCVAHNSLFERI----LFKKTL--------------GIDIPSKRWICTSVLART 102 L D++V+ A N+ FER+ K+ G + W C+ + + Sbjct: 66 LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQL 158 GLP SL+ L E K EGK LI FCK + + W+L Sbjct: 126 MGLPLSLEGVGAVLGLEEQKLK--EGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWEL 183 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y KRDVE + K+L P+ + + + LDQ INDRG +D+D+V + A Sbjct: 184 FKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAIS 243 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L + + + ++ +L G+D + + + +L + D Sbjct: 244 KATLMATMQD--LTDLENPNSVAQMKGWLAAK-GVDTDSLDKKAVIELLKT--VPTDVAD 298 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ R + S++ K + AV DGR RG QFYGA+R+GRW+G + Q QNLP+ Sbjct: 299 VLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHME 358 Query: 337 EEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + + + I E + G+ S+ +R+ I G K VAD + IEARV+A + Sbjct: 359 DLDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHL 418 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKT 450 A E W++K FA+ DIY + + F P++K + R GK+ ELALGY G + Sbjct: 419 AKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTS 478 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M A+ L + + AW Sbjct: 479 MG----------------------------------------ALDMGLAEEELQPLVDAW 498 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 RA + ++Q W D+ ++E + + + IVLPS RRL Y Sbjct: 499 RAANPNIVQFWWDVDNAVKRAIKERTATKTHGIR------FIYKSAMLFIVLPSGRRLAY 552 Query: 571 SDVKGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + + + R +YG K ENIVQAISRDILC ++ + Sbjct: 553 VKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALRTL--SH 610 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E S+ +C M + P W +GL L+A+GYE + Y+K Sbjct: 611 CFIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662 >gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 651 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 227/696 (32%), Positives = 317/696 (45%), Gaps = 75/696 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP VGV+ YA E I L AYA D V++ D +P D+L Sbjct: 9 MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V+ A N+ FER+ LG + + W C+ V A G+P L AL+ Sbjct: 69 DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 KM EGK LI F K + + + H W+ F YCKRDVE + Sbjct: 129 ETE--KMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAIT 186 Query: 175 KRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ E D + DQ INDRG RID DL + R E + +LT Sbjct: 187 KRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELTRVD- 245 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+ + +++ + + L + +++ R + S++ K Sbjct: 246 -NPASVTQLLAWLRS-QGLQIDSLAKADVAAALE-GALEGDVAEVLALRQEMAKSSVKKY 302 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + DGR G LQF GA RTGRW+G + Q QNLPRQ S+ + + Sbjct: 303 ERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADM 362 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S+ +R+ +A G + +VAD + IEAR +AW+AGE W + F G DI Sbjct: 363 LETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDI 422 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y T + F ++K S R KV LA GYQGG KTM Sbjct: 423 YCETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMG---------------- 465 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 K L + AWRA + + QLW D+ Sbjct: 466 ------------------------GEKLGLSEDEMADIVAAWRAANPKIAQLWWDINAAA 501 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---- 584 V+++GG+ V R+ + K + I LPS R LVY + + + Sbjct: 502 IAVIKDGGA------RAVGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESITHM 555 Query: 585 -----SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + R TYGGKLTENIVQA +RDIL + ++GY +V+ +HDE+V+E P+ Sbjct: 556 GVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPEG 615 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV LC+LM++ P WA GLPL AEG+E+ YRK Sbjct: 616 R-GSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650 >gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] Length = 644 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 196/698 (28%), Positives = 327/698 (46%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP ++ D +P +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +YL D++V+ A+N+ FER + G+ + + W CT V A LP SL+ ALN Sbjct: 61 EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 KM EGK LI F CK + + ++ + W+LF YC RDV+ +++ Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ D E+ L+ +DQ INDRG +D +L+ ++ + + +++ Sbjct: 179 NKLAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI++ +++ ++ ++ ++ +++ RLA S +++ K Sbjct: 238 -NPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVENTQGD--VAEMMKLRLAMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L +++ R + Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDL 353 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F I Sbjct: 354 VELLYDSTPDVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T +K F+ PI +++K KV LA Y G +M + ++ + Sbjct: 414 YEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGALNFVEEE------ 467 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + ++WR + ++ W ++ Sbjct: 468 -----------------------------------ELKGLVQSWRTANPHIVNYWYEIDG 492 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E V + + + I LPS R L Y + + + + Sbjct: 493 AVKAAVKERKMT------KVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVS 546 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R +YG K ENIVQA +RD+L E M K G+DIV +HDE+V E P Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 644 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 196/698 (28%), Positives = 302/698 (43%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + GV+ YA+ + L YA D PVK+ D T+ ++P ++ Sbjct: 1 MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + + + W C+ V + T GLP SL++ L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ E + + +DQ INDRG RID LV + + + KLT + Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKKLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI +S+ ++ +L + T ++ R S S+I K Sbjct: 237 ANPNSPLQLKDWLHQ-QGIKTDSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSIKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S VAD + +EARV+AW++ E W+ ++FA EDI Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P ++ E R GK+ ELALGY G K M + Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATN----------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + WR ++Q W D+ + Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580 ++ + + + + L S R L Y K + Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547 Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N + R TYG KL ENIVQA SRD+L M+ G +V+ +HDE V + P Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+ +MT+ P WA GL L A G+ Y+K Sbjct: 608 TDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378] Length = 684 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 214/702 (30%), Positives = 317/702 (45%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y A+ + L YA D + VK+ D + +P ++L Sbjct: 39 MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DET+ A N+ FER+ + LG + W C+ V + GL SL+ Sbjct: 99 DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158 Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHVQA-WQLFGEYCKRDVEAT 170 L K+ EGK LI F C + + + WQ F Y KRDVEA Sbjct: 159 VLGLE--KQKLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAE 216 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ +RL P+ + D + LDQ INDRG ++D+D V + + +KL + ++T Sbjct: 217 IQIQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQIT 276 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G+++ + + + L ++ +++ R + S+ Sbjct: 277 N--LDNPNSVQQMKSWLCE-NGLEMETLGKKAVAEKLKETDG--ELNEVLSLRQQLAKSS 331 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV SD R RG QFYGA+RTGR++G + Q QNLP+ + + I Sbjct: 332 VKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNG 391 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ET D S +R+ + G K +VAD + IEARVL+W+AGE W+ K FA+ Sbjct: 392 DVETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFAS 451 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M + ++ Sbjct: 452 GGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 511 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + AWR + + Q W Sbjct: 512 L----------------------------------------KPLVNAWRMSNPNITQFWW 531 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 D+ V+E S + + IVLPS RRL Y + + Sbjct: 532 DVDRAAKQCVKENKSQET------HSIEFHCFSGMLFIVLPSGRRLAYVKPRIGENQFGG 585 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQAISRDIL MK+ Y IV VHDE++ Sbjct: 586 ESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSL--RHYRIVAHVHDEVI 643 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ET P SV +C M++ P WAKGL L A+GYE Y+K Sbjct: 644 IET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 259/691 (37%), Positives = 374/691 (54%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584 + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL ENI QA +RDIL M GY IVLTVHDE+++E PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 656 KALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] Length = 662 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 205/718 (28%), Positives = 308/718 (42%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D V + D + +P ++ Sbjct: 1 MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKT---LGID-----------------IPSKRWICTSV 98 L D+TV+ A N+ FER+ + LG+ + + W C+ V Sbjct: 61 DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQ 154 A T GLP SL+ L K+ EGK LI F C + + H Sbjct: 121 WAATMGLPLSLEGVGAVLGLE--KQKLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W+ F +Y RDVE + RL P+ + D + +DQ INDRG R+D+DLV + E+ Sbjct: 179 KWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L + + + ++ +L G++ + + + ++ + Sbjct: 239 DTRSRSELTAAMKD--MTALDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIKTA--PP 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++ R + S++ K T+ AV DGR RG FYG +RTGRW+G + Q QNLP+ Sbjct: 294 ELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + + D S +R+ I +G + V+D + IEARV Sbjct: 354 NHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446 +AW AGE W+ K F G DIY + ++ F+ P++K + R GK+ ELALGY G Sbjct: 414 IAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + +++ W D+ V+ + S+ L + I LPS R Sbjct: 494 VDAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYG------LTFSCRSGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + T + + +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMKTL 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV+ +HDE+V E P+ S+ LC M + P WAKGL L+A+GY Y+K Sbjct: 608 --RCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661 >gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] Length = 646 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 203/702 (28%), Positives = 305/702 (43%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D VK+ D +P ++ Sbjct: 1 MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D++V A N+ FERI K LG + W C+ V + GLP SL+ + Sbjct: 61 DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120 Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170 L K+ EGK LI F C + + +H + W+ F Y RDVEA Sbjct: 121 VLGLE--KQKLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ RL P+ D D + LDQ INDRG ++D+D V K E+ R+ L + Sbjct: 179 MQIQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQ--V 236 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L GI+ + + + +++ + +++ R + S+ Sbjct: 237 LTSLTNPNSVVQMKGWLSD-NGIETETLGKKAVAALIDE--VPDEMSEILALRQKLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + +V DGR+RG QFYGA+RTGR++G + Q QNLP+ + + + Sbjct: 294 VRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSG 353 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ D S +R+ I + + +VAD + IEARV+AW AGE W+ FA Sbjct: 354 DYDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + AWR + +++ W Sbjct: 464 ------------------------------ALEMGLAEEELPELVSAWRCSNPNIVRFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ ++ S + + + I LPS R L Y + Sbjct: 494 DVDSAVKKAIKSKTSTAT------HGVHFSCRSGMLFITLPSGRVLSYVKPCMGENKFGG 547 Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA SRDIL MK IV VHDEI+ Sbjct: 548 ESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMKTL--RCCSIVAHVHDEII 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + P WA+GL L+A+GYE + Y+K Sbjct: 606 IEA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645 >gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 194/698 (27%), Positives = 304/698 (43%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ E + + +DQ INDRG RID LV + + + +LT + Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI +S+ ++ +L + T ++ R S S++ K Sbjct: 237 ANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S VAD + +EARV+AW++ E W+ ++FA EDI Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P ++ E R GK+ ELALGY G K M + Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK----------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + WR ++Q W D+ + Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 ++ + + + + L S R L Y K + + + Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R TYG KL ENIVQA SRD+L E M+ G +V+ +HDE V + P Sbjct: 548 FMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+ LMTK P WA GL L A G+ + Y+K Sbjct: 608 FNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643 >gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 645 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 219/698 (31%), Positives = 338/698 (48%), Gaps = 77/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY I L AYA+D + VK+ D +P++++ Sbjct: 1 MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L +E ++ A N+ FERI + L + + W CT+V A T G P SL L Sbjct: 61 EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 +E KM+EGK LI F CK + + H + W F +YC RDVE R + Sbjct: 121 TEQ--KMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+S+ E+ ++LD INDRG +DLDLV + E K D + Sbjct: 179 KKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECD--RLHKEDTFTEAQRLTGL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +S+ + + ++ + L+ RL + ++I K Sbjct: 237 DNPNSVAQLKQWLIE-NGVEVDSLSKKAVSDLAKEADG--EVERLLNLRLQLAKTSIKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + +T Sbjct: 294 EAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDT 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S+ +R+ I + + +VAD + IEARV+AW+AGE W++ FA I Sbjct: 354 LALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI++++K R GK+ ELALGY G M Sbjct: 414 YEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + AWR + + +LW D+ + Sbjct: 460 --------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V++ ++ V ++ ++ + I LPS RRL Y + + + Sbjct: 494 AAIKAVKKKTTVM------VGKIKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + R TYG KL ENIVQAI+RD+L E M +NGY+IV+ +HDEIV E P Sbjct: 548 YEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ +C +M P+WA+ LPL+A+G+E + YRK Sbjct: 608 LN-FGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 259/691 (37%), Positives = 374/691 (54%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584 + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL ENI QA +RDIL M GY IVLTVHDE+++E PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 656 KALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] Length = 644 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 197/698 (28%), Positives = 328/698 (46%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP ++ D MP +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D++V+ A N+ FER + G+ + + W CT+V A LP SL+ ALN Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 KM EGK LI F CK + + ++ + W+LF YC RDV+ +++ Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ D E++L+ +DQ INDRG +D +L+ ++ + +++ Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI++ +++ ++ ++ + +++ RL+ S +++ K Sbjct: 238 -NPNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEKTEG--EISEMMKLRLSMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L ++I R + Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F I Sbjct: 354 VELLYDSTPDVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T +K F+ PI++++K KV LA Y G +M + ++ + Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGALNFVEEE------ 467 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + ++WR + ++ W ++ Sbjct: 468 -----------------------------------ELKGLVQSWRTANPHIVNYWYEIDG 492 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E + V R+ + + I LPS R L Y + + + + Sbjct: 493 AVKAAVKERKMTT------VGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R +YG K ENIVQA +RD+L E M K G+DIV +HDE+V E P Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLEVP 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 214/698 (30%), Positives = 327/698 (46%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M K+ ID+ET S L K GV+ YAE I L AY+ DD VK+ D +P ++L Sbjct: 1 MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DE++ A N+ FER+ + L + + W CT + + GLP SL+ L Sbjct: 61 SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHVQ-AWQLFGEYCKRDVEATRELF 174 KM EGKALI F CK + + +H W +F EY +RDVE E+ Sbjct: 121 --DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+ E + + +DQ INDRG ID LV + R++ + ++LT Sbjct: 179 KKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +++ ++S + ++ K+++ R S S++ K Sbjct: 238 -NPNSPLQLKEWLNKK-GLEIDSLAKKDVESAIKNAEGD--IKEVLELRQELSKSSVRKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + + R RG +QFYGA+RTGR+SG + Q QNL R + L +++ ET Sbjct: 294 DAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 P + S +R+ I G + +++D + IEARVLAWIA E W + AF NGEDI Sbjct: 354 MEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T ++ F P++K + R GK+ LA GYQG K M Sbjct: 414 YCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 ++ L + + +WR + ++ LW D+ Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 VV+ R LV+ K + I LPS RRL Y K + + Sbjct: 494 VVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVV 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ + +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V E+ Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIESD 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + V + M+ P WA GL L A+G+E++ Y+K Sbjct: 608 SSSIEEVNQI---MSIVPGWASGLILDADGFESEFYKK 642 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 259/691 (37%), Positives = 370/691 (53%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + F + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYNESVKHKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTAT 584 + ++ L +RR + I LPS R + Y + +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 649 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 220/702 (31%), Positives = 328/702 (46%), Gaps = 81/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L GV+ Y A I L YAWDD+PV+L D +P ++ Sbjct: 1 MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + V+ A N+ FERI K L + + W CT++ A GLP L AL Sbjct: 61 NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K GK LI F CK + + +H + WQ F +YC RDVE RE+ Sbjct: 121 KVQ--KDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ P+ + E LWLLDQ IND G +D+ LV + + Q +L+ + T + Sbjct: 179 RKIERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAK--TLTKL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +S+ ++++L+ ++ + L+ R + S+I K Sbjct: 237 DNPNSVAQLKEWLKE-QGLEVESLSKQAVQNLLTDADG--EIERLLTLRQEMAKSSIAKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V D R+RG QFYGA+RTGRW+G +FQ QNLP+ + + + + R + Sbjct: 294 AAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKE 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S+ +R+ +I G + +VAD + IEARVLAW+A E W + F I Sbjct: 354 LELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y T ++ F P++K++K E RA GKV LA GYQGG K M + Sbjct: 414 YEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGADK-------- 465 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 L T + + +AWR+ +Q +++ W D Sbjct: 466 --------------------------------MGLSDTELDDIVRAWRSANQRIVRFWYD 493 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------- 576 + + V+E V L + + I LPS RRL Y K + Sbjct: 494 VEKAAVLAVREREPQR------VGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDK 547 Query: 577 --CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +Y Q R++TYGG+L ENIVQ +RD L E M GY IV VHDEI+ Sbjct: 548 DGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEII 607 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +E S+ LC +M + WA GLPL+A+G+E Y+K Sbjct: 608 TEMRKGQ-GSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 261/691 (37%), Positives = 373/691 (53%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +DEPV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + F + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYNESVKRKSTFGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584 + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 256/691 (37%), Positives = 371/691 (53%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTAT 584 + ++ L +RR + I LPS R + Y + +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 259/691 (37%), Positives = 373/691 (53%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCDIPI-NNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKK+VV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYGESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584 + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 258/691 (37%), Positives = 374/691 (54%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 62 ADPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTAT 584 + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL ENI QA +RDIL M GY IVLTVH+E+++E PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 656 KALSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] Length = 661 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 192/716 (26%), Positives = 303/716 (42%), Gaps = 98/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L ID+ET S + K G + YAE I L + D+ PV ++D +P+++L Sbjct: 2 MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID------------------IPSKRWICTSVLA 100 L DE ++ A N+ FER+ L + W CT + + Sbjct: 62 AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAW 156 GLP SL+ L + KM+EGK LI FC K + + H W Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQ--KMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKW 179 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + F Y +RDVE + +RL P+ D + +DQ IND G +D+D+V Sbjct: 180 ETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDE 239 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L + +T+ + + ++ +L G++ + + + ++ ++ Sbjct: 240 RSKSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLIKETDGD--I 294 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + RL + S++ K + AV DGR G QFYGA+R+GRW+G + Q QNLP+ Sbjct: 295 SKALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNH 354 Query: 335 RSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ + + +T D S +R+ IA G K +V+D + IEARVLA Sbjct: 355 MSDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLA 414 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVF 448 +AGE W+ K FA G+DIY + ++ F P+ K + R GK+ ELALGY G Sbjct: 415 HLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGAL 474 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K+M A++ L + + Sbjct: 475 KSMG----------------------------------------ALEMGLTEEELQPLVD 494 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 +WR+ + + W ++ ++ V + + I PS R L Sbjct: 495 SWRSSNPMITAFWWNVDNAIKTAIKMHIPTE------VNGIHFCYKSGMLLIKRPSGRVL 548 Query: 569 VYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K + T + R +YG K ENIVQA+SRDILC MK Sbjct: 549 SYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMKTL-- 606 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E + + +C M ++ W G+ L+A+GYE Y+K Sbjct: 607 RHCFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRADGYETNFYKK 660 >gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 644 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 194/698 (27%), Positives = 302/698 (43%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ ++P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + + + W C+ V + T GLP SL++ L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ E + + +DQ INDRG RID LV + + + +LT + Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L I +S+ ++ +L + T ++ R S S+I K Sbjct: 237 ANPNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSIKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S VAD + +EARV+AW++ E W+ ++FA EDI Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P ++ E R GK+ ELALGY G K M + Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATN----------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + + WR ++Q W D+ + Sbjct: 463 -----------------------------LGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------ 580 ++ + + + + L S R L Y K + Sbjct: 494 AAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547 Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N + R TYG KL ENIVQA SRD+L E M+ +V+ +HDE V + P Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAVIDAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+ LMT+ P WA GL L A G+ + Y+K Sbjct: 608 SNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643 >gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK72] Length = 643 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 214/699 (30%), Positives = 333/699 (47%), Gaps = 81/699 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+ ++ D + +P ++L Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+ ++ A N+ FER+ K LG + +K W CT+VLA + GLP SL+ LN Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG LI F CK + + + +H + W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 RL PL + E+ + LDQ INDRG +D LV + ++++ + +L+ Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+ + + + + L ++ +++ RL S +++ K Sbjct: 238 -NPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG--EVLEMLKLRLLMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ + ET Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFET 353 Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + G+ S+ +R+ + G + +VAD A IEARVLAW++GE W+++ F G DI Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQN 465 Y + + F P++K + R GK+ ELALGY G M + GL+ ++ Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEEL--- 470 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + WR+ + ++ W ++ Sbjct: 471 --------------------------------------QPLVNQWRSANPHIVAFWWEID 492 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA-- 583 + R + LV+ + I LPS R+L Y + + Sbjct: 493 KVAKQ------VYETREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGL 546 Query: 584 -------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 + + R TYG KL ENIVQ I+RD+L GM + G IVL VHDE V E Sbjct: 547 TYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV 606 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +C L+ P WA+GLPL+A+GY + Y+K Sbjct: 607 RE---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 653 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 221/700 (31%), Positives = 326/700 (46%), Gaps = 76/700 (10%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L ID+ET S + VG + YAE A I L AYAWDD PV++ D T + +P+D+L L Sbjct: 2 ILSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALT 61 Query: 63 DETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLAL 116 D +M A N+ FER + L + + W CT V A T GLP SL L Sbjct: 62 DNDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTL 121 Query: 117 NFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E KM G LI FCK + + + W F YC RDVEA RE Sbjct: 122 KLGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAERE 181 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +RL P+ + ER LW LDQ INDRG RID L + R ++ + L+ Sbjct: 182 VRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSGL 241 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ +++ G + +++ T+ ++ + K ++ ++ S +++ Sbjct: 242 E--NPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAKSET-VKTMLQLKMLLSKTSVK 298 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + +A SDGR G LQFYGA+RTGRW+G + Q QNLPR +E + + Sbjct: 299 KYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDT 358 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + +P + S +R+ I + G + VAD + IEARV+AW+AGE W++ FA+G Sbjct: 359 DALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGG 418 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + +K F+ P++K + R GKV ELALGY GG K M + Sbjct: 419 DIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGADK--------- 469 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 L E +K++WR +++LW D Sbjct: 470 -------------------------------LGLTDAELEEIKQSWRKASPRIVRLWSDF 498 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------- 576 V+E ++S + + + + I LPS R L Y + + Sbjct: 499 ESAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDRE 553 Query: 577 -CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y ++RTYGG+L EN +QAI+RD L M GY IV+ +HDE+V E Sbjct: 554 GLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVVE 613 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 TP + + +C +M+K WA GL L A+GY Y+K Sbjct: 614 TPRS-VDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652 >gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK1057] Length = 643 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 214/699 (30%), Positives = 333/699 (47%), Gaps = 81/699 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+ ++ D + +P ++L Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+ ++ A N+ FER+ K LG + +K W CT+VLA + GLP SL+ LN Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG LI F CK + + + +H + W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 RL PL + E+ + LDQ INDRG +D LV + ++++ + +L+ Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+ + + + + L ++ +++ RL S +++ K Sbjct: 238 -NPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADG--EVLEMLKLRLLMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ + ET Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVET 353 Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + G+ S+ +R+ + G + +VAD A IEARVLAW++GE W+++ F G DI Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQN 465 Y + + F P++K + R GK+ ELALGY G M + GL+ ++ Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGALDMGLEEEEL--- 470 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + WR+ + ++ W ++ Sbjct: 471 --------------------------------------QPLVNQWRSANPHIVAFWWEID 492 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA-- 583 + R + LV+ + I LPS R+L Y + + Sbjct: 493 KVAKQ------VYETREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGL 546 Query: 584 -------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 + + R TYG KL ENIVQ I+RD+L GM + G IVL VHDE V E Sbjct: 547 TYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEV 606 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +C L+ P WA+GLPL+A+GY + Y+K Sbjct: 607 RE---ESVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 207/702 (29%), Positives = 308/702 (43%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L DIET S L K GV+ Y A+ I L AY+ D VK+ D +P +L Sbjct: 4 IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V+ AHN+ FERI F + LG I + W CT A GLP SL Sbjct: 64 SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEAT 170 L KM EGK LI FC + ++ + W+ F Y RDVEA Sbjct: 124 VLGLG--KQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAE 181 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+ ++L P+ D D + L + IND G ++D+D V + + KL + + + Sbjct: 182 MEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQE-- 239 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L + +++ R + S+ Sbjct: 240 ITELDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELLKDAPEH--LAEVLKLRQQLAKSS 296 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV SDGR+RG F GA+RTGR+S + Q QNLP+ + ++I Sbjct: 297 VKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNG 356 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E D S +R+ + G K +VAD + IEARVL+W+AGE W+ + FAN Sbjct: 357 DSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN 416 Query: 405 GEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K + R GK+ ELALGY G K M + ++ Sbjct: 417 GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 476 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + AWRA + +++ W Sbjct: 477 L----------------------------------------KPLVNAWRASNPNIVKFWW 496 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 D+ ++E + V + + IVLPS R+L Y + Sbjct: 497 DVDREVKKCIKEK------KSQEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGG 550 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 AT + R +YG K ENIVQAISRDIL MK + IV VHDE++ Sbjct: 551 ESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTL--STCSIVAHVHDEVI 608 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E S+ +C M + P WAKGL L A+GYE Y+K Sbjct: 609 IEA--DQSLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 255/691 (36%), Positives = 371/691 (53%), Gaps = 24/691 (3%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + HNS F+R + + + + P +RW T V A +GLP +L C L + Sbjct: 62 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 182 WNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 302 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + Sbjct: 422 KLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELECTVR 540 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTAT 584 + ++ L +RR + I LPS R + Y + +Y+ N+ + Sbjct: 541 TAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYS 595 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 596 RKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFND 655 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 656 KALSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 222/708 (31%), Positives = 320/708 (45%), Gaps = 89/708 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LF+D+ET SP L K GV+ YAE + L Y+ D PVK+ D +P++++ Sbjct: 1 MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108 + L D V A N+ FER+ L + +W CT V + GLP S Sbjct: 61 EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCK 164 L+ L+ + K GK LI RFC + + A+ W+ F Y + Sbjct: 121 LEQVATVLDLP--VRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNR 178 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL P+ + E + LDQ IND G R+D LV + Q R Sbjct: 179 RDVEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLA 238 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +LT + L+ +L G L +++ + + L + ++++ R Sbjct: 239 RAQELTGLE--NPNSPIQLKDWLT-AHGTPLQSLTKDEVAAALDTATG--EVREVLQLRG 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K T+ DGR RG LQFYGA RTGR++G + Q QNLPR + + Sbjct: 294 ELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEAR 353 Query: 343 TIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + E S +R+ + ++G + VVAD + IEARV+AW+AGE Sbjct: 354 DLVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATT 413 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG K M Sbjct: 414 LQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + + AWRA + Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 V+QLW D+ IS R+ V L + + LPS RRL Y K G Sbjct: 494 VVQLWADINAAAIEA------ISTRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLG 547 Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + TA + + TYGGKLTENIVQA++RD+L GM + GY IV+ Sbjct: 548 ENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMH 607 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV ET +V +C LM P WA GLPL A+GY Y K Sbjct: 608 VHDEIVVET---ATATVDEICELMATAPDWAAGLPLAADGYACDFYMK 652 >gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 650 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 203/714 (28%), Positives = 308/714 (43%), Gaps = 104/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ETRS + K GV+ YAE I L Y+ D V++ D +P ++L Sbjct: 1 MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKT---LGIDIP-----------------SKRWICTSV 98 L DE+V+ A N+ FER+ + LGI + W CT V Sbjct: 61 DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + GLP SL L E KM EGKALI F P W L Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQ--KMNEGKALIRYFSTPPFHEPTGA--------KWDL 170 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y +RDVE + KRL P+ + ++LDQ INDRG R+D+ LV ++ + Sbjct: 171 FKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRT 230 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 ++KL + + LT + ++ +L G++ + + ++ ++L +N+ K+ Sbjct: 231 KEKLTDRLKTLTSLE--NPNSVTQMKAWLKE-QGVETESLDKKSVTALL--ANVPDPLKE 285 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ R + S++ K + V SDGR RG QFYGA+RTGR+SG Q QNLP+ + Sbjct: 286 VLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLA 345 Query: 337 EEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + +++ + S +R+ I+ G+K +VAD + IEARVL+W+ Sbjct: 346 DLEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEARVLSWL 405 Query: 393 AGEDWKIKAFANGEDIYVTTYAKA--FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 A E W++ FAN DIY T + N + R GK+ EL+ GY G K Sbjct: 406 AKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGALKA 465 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 A++ + + AW Sbjct: 466 FG----------------------------------------ALESGMKEEELNPLVDAW 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 RA + ++ W + ++E + + + I LP RRL Y Sbjct: 486 RAANPNIVDFWWAVDRATKDCIKERSTKVTHGIR------FIYQGSMMFIELPCGRRLAY 539 Query: 571 SDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + + + R +YG KL EN+ QAISRDILC M+ Sbjct: 540 VKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQTL--RT 597 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DIV VHDE++ E S+ +C M + P WA GLPL+A+G+E + Y+K Sbjct: 598 MDIVAHVHDELIIEC--DERVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649 >gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 646 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 204/697 (29%), Positives = 318/697 (45%), Gaps = 77/697 (11%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S L GV+ Y+ I L AY+ DDE D P + ++ Sbjct: 3 RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D+TV A N+ FER F + W CT+V A LP SL+ L Sbjct: 63 MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGL- 121 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELFK 175 KM EGK LI FC + + + W+ F YC RDV+ +++ + Sbjct: 122 -DKQKMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQ 180 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL P+ E++++ LDQ INDRG +D +LV ++ +LT Sbjct: 181 RLAKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTGLE-- 238 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+++L G+++ +++ T+K + + ++++ RLA+S +++ K Sbjct: 239 NPNSVSQLKLWLKEK-GLEVDSLAKDTVKDLSMKAEGD--VQEVLKLRLATSKTSVKKYE 295 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET- 352 + +V ++ R+ G LQFYGA+RTGRW+G + Q NLP+ + L + + + R E Sbjct: 296 AIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEV 355 Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 + S+ +R+ +A G + +++D + IEARVLAW+AGE+W+++ F IY Sbjct: 356 ELFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGKIY 415 Query: 410 VTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + F+ I++++K R GK+ ELALGY G +M Sbjct: 416 EASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMG--------------- 460 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A+K L + WR+ + + W + E Sbjct: 461 -------------------------ALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEA 495 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN------ 581 V++ + + V R+ + + LPS R+L Y + + Sbjct: 496 AVTAVRDK------KPSKVGRVSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREGLTY 549 Query: 582 ---TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + + MR TYG KL ENIVQA SRDIL E M K G+DIV VHDE+V E PD Sbjct: 550 EGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLEVPD 609 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV + +M NP W +GLPLKA G+E+ Y+K Sbjct: 610 GKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645 >gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 653 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 221/708 (31%), Positives = 315/708 (44%), Gaps = 89/708 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LFIDIET SP L GV+ YA+ + L Y+ D PV++ D +P +L Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108 L D V+ A N+ FERI L + +W CT V + GLP S Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCK 164 L L+ + K GK LI +FC + A+ W+ F Y + Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL PL E D + LDQ +ND G R+D LV Q R Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +LT + L+ +L G L +++ + + L + ++++L R Sbjct: 239 RAQELTGLE--NPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTATGQ--VREVLLLRG 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + DGR RG LQFYGA RTGR++G + Q QNLPR + + Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353 Query: 343 TIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++ E S +R+ I ++G + VVAD + IEARV+AW+AGE Sbjct: 354 SLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTT 413 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG K M Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + + AWRA + Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPS 493 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V+QLW D+ +IS R+ +V L + I LPS RRL Y K Sbjct: 494 VVQLWADINAAAIE------TISTRQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547 Query: 577 CSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + T + + TYGGKLTENIVQA++RD+L M + G+ IV+ Sbjct: 548 ENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMH 607 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV ET +V +C LM+ P WA GLPL+A+GY Y K Sbjct: 608 VHDEIVVET---ATATVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652 >gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 674 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 209/711 (29%), Positives = 316/711 (44%), Gaps = 96/711 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L +D+ET S L K GV+ YAE I L Y+ D V++ D + +P +L L Sbjct: 20 LSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVLSAL 79 Query: 62 RDETVMCVAHNSLFERILFKKTL----------------GIDIPSKRWICTSVLARTNGL 105 DETV A N+ FERI + L G+ + W CT + + T GL Sbjct: 80 TDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSATLGL 139 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGE 161 P SL+N + L K+ EGK LI F C + + + H + W+ F Sbjct: 140 PMSLENVGIVLGL--DKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFKS 197 Query: 162 YCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 Y KRDVE + ++L P+ D + LDQ INDRG ID V +L + + Sbjct: 198 YNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKTH 257 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L ++ ++T + +R +L G+++ + + + L + +++ Sbjct: 258 LMSELKRVTGLE--NPNSVLQMRSWL-KKHGLEMESLGKKEVAKELKTVG--KELAEVLR 312 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R + S++ K + A D R RG +FYGA+RTGR++G + Q QNLP+ + Sbjct: 313 LRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPDLA 372 Query: 340 LTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +++ E D S +R+ I G K +VAD + IEARVLAW+AGE Sbjct: 373 EARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLAGE 432 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMAS 453 W+++ FA G+DIY ++ ++ F+ P++K + R GK+ ELALGY G K M Sbjct: 433 KWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG- 491 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 A+ L + + AWR+ Sbjct: 492 ---------------------------------------ALDMGLTEDELQPLVDAWRSS 512 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V LW D+ V E S+ +V + I LPS R L Y Sbjct: 513 NPMVTTLWWDVDRAVKQCVHEHVSVRT------HNIVFTYKSGFLIIKLPSKRCLYYVKP 566 Query: 574 KGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + + + T + R +YG K ENI QAI+RDIL M+ + Y I Sbjct: 567 RVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQTLKE--YRI 624 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE + ET + SV ++C LM + P WA+GL L+A+GYE + Y+K Sbjct: 625 VAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673 >gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 655 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 214/707 (30%), Positives = 313/707 (44%), Gaps = 85/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIE+ SP L K GV+ YAE + L Y+ D PVK+ D +MP ++L Sbjct: 1 MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 L D +V+ AHN+ FER+ L + ++W CT + + GLP SL Sbjct: 61 AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKR 165 L K GK LI +FC + ++ + W F +Y +R Sbjct: 121 DAVAAVLKLDVQ--KDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 KLT + + L+ +L G +L +++ + + L + + K+++ R Sbjct: 239 AQKLTG--LDNLNSPIQLKQWLVTR-GCELESLAKAEVDAALDTATG--VVKEVLELRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + S++ K + +DGR RG +QFYGA RTGR++G + Q QNLPR + ++ Sbjct: 294 LAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARS 353 Query: 344 IQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + S +R+ I S G + +VAD + IEARV+AW+AGE + Sbjct: 354 LVQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 AF G+D+Y T ++ F+ P++K + E R GK+ LA GY G K M Sbjct: 414 AAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG----- 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A L + + AWR + + Sbjct: 469 -----------------------------------AFTMGLAEHELKPIVDAWRQANPHI 493 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 +QLW D+ + + I R L + I LPS RRL Y + Sbjct: 494 VQLWADVEQAAIAAISSRQPIRLR------NLRFSVESGILFIELPSGRRLAYVQPRLGE 547 Query: 578 SYL---------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + T + + TYGGKL ENIVQAI+RD+L GM K G+ IV+ V Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHV 607 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV + P F+V C LM+ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654 >gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] Length = 656 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 194/700 (27%), Positives = 297/700 (42%), Gaps = 70/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G++ Y E + L AYA+D V + D + +P ++ Sbjct: 1 MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + V+ A+N+ FE + G ++W CT + G P+ L AL Sbjct: 61 SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174 E K+ GKALI FC K + + + + W LF EY +DV E + Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ +D W++D +N RG ++D+DLV + Q + +L E +++T + Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L ++ + + L +++ T+ L + +++ R A + S+I K Sbjct: 238 TNPNSRNQLLTWINDNSDLKLEKLTKETVAESLQIAEDQ--VAEVLHIRRALAKSSISKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 ++ AV +DGR+RG LQFYGA+RTGRW+G + Q QNLP + Sbjct: 296 ESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHDVPVAMDTAIRLVKNGNARG 355 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R+ +A G L V+D + IEARVL+W+A E W+ FA G DI Sbjct: 356 VKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGGDI 415 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F P++K + R GKV ELALGYQGG TM + Sbjct: 416 YCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMGALKQ---------- 465 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 L + WR + + W D+ Sbjct: 466 ------------------------------GLTEDELPDIVHRWRGANPRICGFWYDVDG 495 Query: 527 GFACVVQEGGSISA-RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGDC 577 V+ + + + + + I LPS R+L Y K Sbjct: 496 AALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKPAL 555 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 Y A + TYGGKL ENI QAI+RD L + K GY ++ +HDE+V E P Sbjct: 556 HYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLEVP 615 Query: 638 DT--PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + +M WA GL L A+G+ + Y K Sbjct: 616 KDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655 >gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 655 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 216/697 (30%), Positives = 330/697 (47%), Gaps = 77/697 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L + GV+AYAE I L AYA+DDE V + D + +P+ +L+ L Sbjct: 10 LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKAL 69 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D ++M A+N+ FER L +P+++W C+SV A T GLP L LN + Sbjct: 70 IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGDQ 129 Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRL 177 K GKALI F CK + + + ++ W + YC++DVE R L KRL Sbjct: 130 --KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRL 187 Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 P+ + E+ LW LDQ +ND G RID DLV + +L A+E+ L E+ ++T + Sbjct: 188 ASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITGLE--NP 245 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 LR +L GI+ +++ + +L ++ + +++ R S +++ K + Sbjct: 246 NSVAQLRDWLTSR-GIETSGLAKKQVSDLLQT-DLPGDVRRVLILRQMMSKTSVKKYEAM 303 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ DG +RG LQFYGA+RTGRW+G + Q NLP+ + + + E I Sbjct: 304 DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITT 363 Query: 356 PLGLASDCV----RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G +D + R+ I G + VV+D + IEARV+AW+AGE W++K F IY Sbjct: 364 LYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEA 423 Query: 412 TYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + ++ F PI++++K R GK+ ELALGY G M Sbjct: 424 SASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMG----------------- 466 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A++ L + KAWR + ++ LW DL + Sbjct: 467 -----------------------ALEMGLSEDELPALVKAWRKANPNIVNLWYDLEKSAF 503 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---------KGDCSYL 580 V+ ++A+ + + LPS R L Y + + +Y Sbjct: 504 EAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYE 558 Query: 581 N--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + Q R TYGGK+ EN+VQAI+RD L E M GY I VHDE+V E P Sbjct: 559 GVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVP- 617 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + +M++ WA GLP+ A+ +E Y+K Sbjct: 618 NEQDAKADIERIMSEPIDWAPGLPMNADSFETGYYKK 654 >gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725] gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725] Length = 657 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 201/702 (28%), Positives = 309/702 (44%), Gaps = 73/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G++ YA + I L AY+ D VK+ D + +P ++ Sbjct: 1 MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D+ ++ A+N+ FE G ++W T G + L A+ Sbjct: 61 EALNDKNIIKHAYNAPFEWWCL-NQAGYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K GKALI FC K + + +H + W+LF YC +DV E++ Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ E++LW+LDQ IN G +ID +LV + +L E+ +++T + Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L TG D+ ++ +GT+ ++ + + L R + ++I K Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVRVL-EIRQELAKTSIKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 + EA+ DGR+RG LQFYGA+RTGRW+G + Q QNLPR + I + Sbjct: 297 VAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDADF 356 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ + S G K VVAD + IEARV+AW+AGE W+ + FA I Sbjct: 357 LKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGKI 416 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIG-----KVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y + ++ F PI+ + K KV ELALGY G + M Sbjct: 417 YEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMG----------- 465 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ L V + WR ++ + LW Sbjct: 466 -----------------------------ALDMGLEEKELPDVVRRWRNANKRITDLWYG 496 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL--- 580 + +++ G + + + + + + + I LPS R+L Y + Sbjct: 497 IENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGSN 556 Query: 581 -------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 N T + + TYGGKL ENIVQAISRD L +K G V+ +HDE V Sbjct: 557 ALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDEAV 616 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + +C LM + WA GL LKA G+E+ Y K Sbjct: 617 IDADPN--VDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656 >gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188] gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188] gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] Length = 653 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 218/704 (30%), Positives = 320/704 (45%), Gaps = 81/704 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG+ + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ +LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTGL 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E D +R+ ++A G + +V+D + IEARV+AW A +DW ++ F Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414 Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 IY T A+ F+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+++ + + + WR ++ + Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--- 576 W + + +Q GG R L + + I LPS R+L Y+ + Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLEQGD 549 Query: 577 ----CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 Y ++TYGGKL ENIVQA +RD+L E M K GY IV VHDE Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDE 609 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 610 AVAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] Length = 663 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 191/716 (26%), Positives = 316/716 (44%), Gaps = 98/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + + IDIET S L K GV+ Y + I L Y+ D V + D + +P +++ Sbjct: 4 IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 L DE + A N+ FER+ + L G + W C+ V + Sbjct: 64 MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAW 156 GLP L A L E K+ EGK LI F CK + + + + W Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQ--KLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKW 181 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 ++F +Y KRDVE + +L P+ + + + LDQ INDRG +D+D+V Sbjct: 182 EMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDE 241 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L + + ++T + ++ +L G+++ + + + ++L+ + + Sbjct: 242 KSKAVLADKMQEMTGLE--NPNSVQQMKQWLSC-NGLEMDSLGKKEVAAVLNTA--PEPL 296 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 K ++ R + S++ K ++ AV SDGR RG FYGA+R+GRW+G + Q QNLP+ Sbjct: 297 KTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNH 356 Query: 335 RSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ +++ E D S +R+ + G + +V+D + IEARVL+ Sbjct: 357 MSDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLS 416 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVF 448 +AGE W+ FA+G DIY + ++ F P++K + R GK+ ELALGY G Sbjct: 417 HLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 476 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K+M A+ L + + Sbjct: 477 KSMG----------------------------------------ALDMGLEEDELKPLVD 496 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 WR + +++LW D+ V++ R +++ + + I LPS R L Sbjct: 497 MWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPSGRCL 550 Query: 569 VYSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K + + T + R +YG K ENIVQAISRDIL ++ Sbjct: 551 SYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIRTL-- 608 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + I VHDE++ E + S+ +C M + P W +G+ L+A+GYE + Y+K Sbjct: 609 SHCFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662 >gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK115] Length = 645 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 216/698 (30%), Positives = 330/698 (47%), Gaps = 77/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + Q I L AY D+E ++ D + +P +L Sbjct: 1 MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 LRD+ V+ A N+ FER+ K L + ++ W CT+V A + GLP SL+ LN Sbjct: 61 SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG+ LI F C+ +I + + +H ++ W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL PL + E+ L+ LDQ INDRG +D +LV + ++++ + +L+ + Sbjct: 179 KRLSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+ + + + + L + +++ RL S +++ K Sbjct: 237 DNPNSVSQLKGWL-ENQGVFMDSLGKKDVAKQLKEVDG--EILEMLKLRLLMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V SD R+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ + + Sbjct: 294 QAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S+ +R+ + +G + +VAD A IEARVLAW++GE W+++ F G DI Sbjct: 354 LDLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A F P++K + R GK+ ELALGY G K M Sbjct: 414 YCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + + WR + ++ W + + Sbjct: 460 --------------------------ALDMGLDEEELQPLVNQWRMANPHIVAFWWVIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA--- 583 R V L++ I LPS R+L Y + + + Sbjct: 494 ASKE------VYETREPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547 Query: 584 ------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R TYG KL ENIVQ I+RD+L GM K DIVL VHDE V E Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +C L P WA+GLPL+A+GY + Y+K Sbjct: 608 EGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644 >gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 655 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 217/707 (30%), Positives = 312/707 (44%), Gaps = 85/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIET SP L K GV+ Y E + L +Y+ D PV++ D +MP ++L Sbjct: 1 MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL---------GIDIPSKRWICTSVLARTNGLPSSL 109 L D V+ AHN+ FER+ L + ++W CT V + GLP SL Sbjct: 61 AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKR 165 L K G+ LI +FC + S + W F +Y +R Sbjct: 121 DAIAAVLKLDVQ--KDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 KLT + + L+ +L G +L +++ + S L + K+++ R Sbjct: 239 AQKLTG--LDNPNSPIQLKQWLATR-GCELESLAKAEVDSALDTATG--AVKEVLELRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + S++ K + SDGR RG +QFYGA RTGR++G + Q QNLPR + +T Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353 Query: 344 IQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + S +R+ I S G + +VAD + IEARV+AW+AGE + Sbjct: 354 LVRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTL 413 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+D+Y T ++ F P++K + E R GK+ LA GY G K M Sbjct: 414 EAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG----- 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+ L + + AWR + + Sbjct: 469 -----------------------------------ALNMGLAEHELKPIVDAWRQANPHI 493 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + LW D+ E + I R L I LPS RRL Y + Sbjct: 494 VGLWADVEEAAIAAISSRQPIRLR------NLRFSVESGIFFIELPSGRRLAYVQPRLGE 547 Query: 578 SYL---------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + T + + TYGGKL ENIVQAI+RD+L GM K G+ IV+ V Sbjct: 548 NRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV + P+ F+V C+LM+ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 641 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 193/705 (27%), Positives = 303/705 (42%), Gaps = 95/705 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ETRS + + GV+ Y AE I L Y+ D V++ D +P ++L Sbjct: 1 MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL-----------GIDIPSKRWICTSVLARTNGLPS 107 L D++V+ A N+ FER+ + L + + W CT V + GLP Sbjct: 61 DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 SL L E KM EGKALI F P + W+LF Y +RDV Sbjct: 121 SLAVVARVLGLEEQ--KMTEGKALIRYFSTPPFHEP--------TGEKWELFKSYNRRDV 170 Query: 168 EATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E + +RL P+ + ++LDQ INDRG +D+ V ++ A ++K+ + + Sbjct: 171 EVEMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLK 230 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 LT + ++ +L G++ + + T+ ++L++ + L K+++ R + Sbjct: 231 TLTGLE--NPNSVAQMKAWLKE-QGVETESLDKKTVAALLTNVSA--LLKEVLELRQQLA 285 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 S++ K + V +D R RG QFYGA+RTGR+SG Q QNLP+ + +++ Sbjct: 286 KSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLV 345 Query: 346 ALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + S +R+ I G+K +VAD + IEARVL+W+A E W++ Sbjct: 346 RQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDV 405 Query: 402 FANGEDIYVTTYAKA--FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 FAN DIY T + N + R GK ELA GY G K Sbjct: 406 FANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG------- 458 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A++ + + + AWR + ++ Sbjct: 459 ---------------------------------ALESGMKEDELKPLVDAWRTANPNIVD 485 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 W + ++E + + I LPS RRL Y + + Sbjct: 486 FWWAVDRAAKDCIKERSITGT------HGIKFIYQSGMMFIELPSGRRLAYVKPRIGENQ 539 Query: 580 LNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + R +YG KL ENI QAISRD+LC M+ IV VHD Sbjct: 540 FGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQTLRSMD--IVAHVHD 597 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E++ E S+ + C M + P WA+GL L+A+G+E + Y+K Sbjct: 598 ELIIEC--DERVSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640 >gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] Length = 653 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 217/704 (30%), Positives = 317/704 (45%), Gaps = 81/704 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG+ + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTGL 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + +R+ ++A G + +V+D + IEARV+AW A +DW + F Sbjct: 355 EGIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHG 414 Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 IY T A+ F+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+++ + + + WR ++ + Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 W + + +Q GG R L + + I LPS R+L Y+ Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLKEGD 549 Query: 575 --GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 Y ++TYGGKL ENIVQA +RD+L E M K GY IV VHDE Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVHDE 609 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 610 AVAEVPEGE-KSIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652 >gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] Length = 656 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 198/702 (28%), Positives = 303/702 (43%), Gaps = 74/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIETRS + K G + YA+ I L AY W+++PVK+ D +P L+ Sbjct: 1 MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D V+ A+N+ FE G + P ++W CT G + L A+ Sbjct: 61 QALADPNVIKHAYNAAFEWYCL-NCAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELF 174 + K+ GKALI F CK + + + H W+LF EYC +DV RE+ Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179 Query: 175 KR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KR L P+ + E LW +D +N G R+D DL+ + ++L ++ + LT + Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 ++ L +L G + ++ + T+ +L N + ++ R ++I K Sbjct: 238 QNPNSAAQLLQWLRD-NGTEADNLQKATVAELLGGIN-PNKVRRMLEIRQQLGKTSIKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A R+RG Q+YGA+RTGRW+G + Q QNLPR + + + Sbjct: 296 VAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYDG 355 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G K VVAD + IEARV+AW+AGE W + FA I Sbjct: 356 VRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y T ++ F P+++++K R GKV LALGYQGG M Sbjct: 416 YEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A++ L + + WR + + LW Sbjct: 465 -----------------------------ALQMGLTEEELPDIVQRWRQANPRIKGLWYA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL--- 580 + V++ + + + + + LPS R+L Y + Sbjct: 496 IENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFEKM 555 Query: 581 -------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + TYGGK+ ENIVQAI+RD L ++ G +V VHDE++ Sbjct: 556 AVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDEVI 615 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P +V +C LM + WA GL LK G+E+ Y K Sbjct: 616 IDAPMET--TVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655 >gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 223/708 (31%), Positives = 315/708 (44%), Gaps = 89/708 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LFIDIET SP L GV+ YA+ + L Y+ D PV++ D +P +L Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108 L D V+ A N+ FERI L + +W CT V + GLP S Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCK 164 L L+ + K GK LI +FC + A+ W+ F Y + Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL PL E D + LDQ +ND G R+D LV Q R Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +LT + L+ +L G L +++ + + L + ++++L R Sbjct: 239 RAQELTGLE--NPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTATGQ--VREVLLLRG 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + DGR RG LQFYGA RTGR++G + Q QNLPR + + Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353 Query: 343 TIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++ + S +R+ I ++G + VVAD + IEARV+AW+AGE Sbjct: 354 SLVRTGNYDAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATT 413 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG K M Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + + AWRA + Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 V+QLW D+ IS R +V L + I LPS RRL Y K G Sbjct: 494 VVQLWADINAAAIEA------ISTRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547 Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + TA + + TYGGKLTENIVQA++RD+L GM + G+ IV+ Sbjct: 548 ENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVMH 607 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV ET +V +C LM P WA GLPL A+GY Y K Sbjct: 608 VHDEIVVET---ATATVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652 >gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] Length = 646 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 211/696 (30%), Positives = 317/696 (45%), Gaps = 76/696 (10%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S + K GV+AY AE I L AYA++D+ + + D +P +++ L Sbjct: 2 LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + ++ A N+ FER K L +P ++W C++V A G SL+ A +LN + Sbjct: 62 TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 KM+EGKALI F ++++ W++F YCK+DVE R + K+L P Sbjct: 122 --KMKEGKALIRYFSMPCKRGERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYP 179 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IND G +ID LV E + K E+ LT + Sbjct: 180 VTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTGLE--NPNSQV 237 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ +L G+ +S+ ++ +L + K ++ R S +++ K + AV Sbjct: 238 QLKGWL-ETKGVKAESLSKEKVRELLKEVEDEK-VKRVLKLRQELSKTSVKKYEAIKRAV 295 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IAD 355 D R+RG L+FYGA+RTGRWSG + Q QNLPR + + E Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 + S +R+ I + + +V+D + IEARV+AW+AGE W I F +Y ++ Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415 Query: 416 AFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F PI+K+ K R GKV LA GYQG M + Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVK--------------- 460 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 L + AWR + +++LW+ + + Sbjct: 461 -------------------------MGLKEEELSGIVAAWRKSNSNIVKLWRKIEDAAIK 495 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-----------SY 579 V+E + + L + + I LPS R L Y + + Sbjct: 496 AVREKKVVKMQYG-----LEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYEG 550 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + T R TYGGKLTENIVQAI+RD L M + GY IV VHDE++ + P+ Sbjct: 551 IEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPNG 610 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ + +M K WAKGLPLKA+G+E Y+K Sbjct: 611 -FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645 >gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A] gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A] Length = 653 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 217/704 (30%), Positives = 320/704 (45%), Gaps = 81/704 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG+ + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ +LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTGL 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E D +R+ ++A G + +V+D + IEARV+AW A +DW ++ F Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414 Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 IY T A+ F+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+++ + + + WR ++ + Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 W + + +Q GG R L + + I LPS R+L Y+ Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLKEGD 549 Query: 575 --GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 Y ++TYGGKL ENIVQA +RD+L E M+ + GY IV VHDE Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDE 609 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 610 AVAEVPEGE-KSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] Length = 653 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 218/704 (30%), Positives = 319/704 (45%), Gaps = 81/704 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LGI + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTGL 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 238 E--NPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 E----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E D +R+ ++A G + +V+D + IEARV+AW A +DW ++ F Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414 Query: 407 DIYVTTYAKAFNT-------PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 IY T A+ F+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG------- 467 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+++ + + + WR ++ + Sbjct: 468 ---------------------------------ALENGIEEHELQDIVDRWRTANKRIKN 494 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 W + + +Q GG R L + + I LPS R+L Y+ Sbjct: 495 FWHETQKAVIDCLQNGGIKKGPRG-----LKFYKKAGFLFIQLPSGRKLAYAKAHLKEGD 549 Query: 575 --GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 Y ++TYGGKL ENIVQA +RD+L E M+ + GY IV VHDE Sbjct: 550 YGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVHDE 609 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 610 AVAEVPEGE-KSIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 198/705 (28%), Positives = 312/705 (44%), Gaps = 82/705 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET S L GV+ Y E + L AYA+DD+PV++ D T +P ++ Sbjct: 9 MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V+ A N+ FER KK GI +W CT+V A GLP L+ L Sbjct: 69 HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA--NHVQAWQLFGEYCKRDVEATREL 173 K GK LI F CK + + + ++ W+ + Y +DV RE+ Sbjct: 129 EAQ--KDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREV 186 Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++L P+ E DLW LDQ INDRG ++D L + + Q + L ++ +T Sbjct: 187 RRKLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQLE 246 Query: 232 IRSSRQTYALRMYLFLITGIDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ +L G++ D + + ++L + + ++ R +++ Sbjct: 247 --NPNSLTKLKEWLAE-QGLETPDGLGKEHMPTLLVQAPDE-DTRRVLQIRQELGKTSVD 302 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N ++ ++ +DGR RG LQF GA+RTGRW+G + Q QNLP+ + + + + + Sbjct: 303 KYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDF 362 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + S +R+ I S G + +V+D + IEAR++AW+A E W + F + Sbjct: 363 DLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHG 422 Query: 407 DIYVTTYAKAFNTPID-----KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY ++ F P++ + E RA GKV LA GYQGG M Sbjct: 423 KIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG--------- 473 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A+K + + K WR + +++LW Sbjct: 474 -------------------------------ALKSGIPEEELPGIVKRWRKANPRIVKLW 502 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS--- 578 E V+E ++ + R + LPS R L Y + + Sbjct: 503 YAAEEAALTAVREKRTVPL-----AHGVKYRYKSGTLFADLPSGRSLAYVNPRIKPDPNF 557 Query: 579 --------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 ++ + M RTYGG+L EN+VQAI+RD L E + Y V+ VHD Sbjct: 558 GKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVMHVHD 617 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V + P SV + +M++ WA GLPL A G+E + Y+K Sbjct: 618 EVVLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 206/699 (29%), Positives = 316/699 (45%), Gaps = 71/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA+ I + AY+WD PV++ D + +P +++ Sbjct: 1 MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A+N+ FE + P ++W CT V G + L AL Sbjct: 61 EALADPAVVKHAYNAAFEWYCLNRFF--YSPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K+ G +LI F CK + + T +H + W+LF EYC DV A E+ Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ D E LW LDQ IN RG DL +V + Q +L + + LT + Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + L +L TG ++ ++ +GT+ ++ + + A+ ++ R S ++ K Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDEGK-ARRVLEIRQELSKTSTKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A SD R+RG LQFYGA+RTGRW+G + Q QNLPR S + + + E Sbjct: 296 AAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVEM 355 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ + GK+L VAD + IEARV+AW+AGE W++ FA I Sbjct: 356 LKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI+++ K + R GKV ELALGYQGG M Sbjct: 416 YEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG-------------- 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + WR ++ ++ LW + Sbjct: 462 --------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSMEA 495 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-------- 578 V++ G + R + + I LPS R+L Y+ + Sbjct: 496 AAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPALH 555 Query: 579 --YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 ++ + + TYGGKL EN VQAI+RD L + GY IVL VHDE+ +E Sbjct: 556 YWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAEL 615 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + + +M + WA GLPLK +G+ Y K Sbjct: 616 --SSADELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652 >gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] Length = 651 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 194/706 (27%), Positives = 303/706 (42%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L ID+ET L K GV++YAE I L A + D+ PV ++D T + +P +L Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 Q L +++++ A N+ FERI L + W C+ V + GLP SL Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L E K EG +I FC K + + +H W F Y KR Sbjct: 122 EGVGTVLKLKEQKLK--EGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +L P+ D + + DQ INDRG ID+D V + + + K+ E+ Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + +LT + + +L G+ + + +K +L + ++ R Sbjct: 240 LKELTGLE--NPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT--TKVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354 Query: 344 IQALNRGETIA---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E S +R+ + S+GKK +V D + IEARVL+ +AGE W+ Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + + R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 W D+ + ++ + + K + I LPS R+L Y K + Sbjct: 495 LFWWDVDKAVKTAIKYQKQTET------HGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + R +YG K ENI+QAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DEI+ E ++ + +LM K P W + L+A+GYE Y+K Sbjct: 607 DEIIIEC--DQSQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] Length = 693 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 258/696 (37%), Positives = 369/696 (53%), Gaps = 30/696 (4%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L++D+ET S P+ G AYA A I L A+A DD PV + + TE +P L LR Sbjct: 4 ILWLDLETYSETPIR-NGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALR 62 Query: 63 DETVMCVAHNSLFERILFKKTLG-IDIP------SKRWICTSVLARTNGLPSSLKNACLA 115 D + AHNS F+R + + L P RW T V A +GLP SL + C Sbjct: 63 DGETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDI 122 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L ++ K + GKALI FCK + T+ H + W+ F +Y D+EA RE+ Sbjct: 123 LGVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREID 182 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L E LW DQ INDRG ++D L + E+K+L LTD + Sbjct: 183 KKLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 +++ Q L ++ G+ L DM T++ +S ++ ++L+ RL +S ++ K Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSDPDLPIELRELLAIRLQASTTSTSKY 302 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + I+AL G Sbjct: 303 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCA 362 Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG---- 405 + + L S +R CI+A GKKLVV+DL+ IE R L W++GE+WK++AF + Sbjct: 363 DLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGT 422 Query: 406 -EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 D+Y+ YA+AFN D V K QR IGKVMEL LG+ GG F T A GLDL ++ Sbjct: 423 GHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAK 482 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 +A+S + Q + + +++ AC+ +K+ WR H + W ++ Sbjct: 483 AALPNVPASIQREAQSWYKASVKQKRTYGLSEQVFI-ACDSLKRMWRNAHPKTVSFWYEI 541 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL- 580 + + R +L +RR + I LPS R + Y ++ G SY+ Sbjct: 542 EDTVRRAIAAPRQTFTCR-----KLKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMG 596 Query: 581 -NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 N+ + + R +TYGGKLTEN+ QA +RD++ M +GY+I LTVHDE+++E PDT Sbjct: 597 INSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDT 656 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 F+ L L+ NP WA LPL A G+EA YRK Sbjct: 657 EQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692 >gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14] Length = 651 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 199/706 (28%), Positives = 308/706 (43%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE I L A + ++ PV ++D + + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLS-KEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FER+ L + W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +RL P+ D D +L DQ INDRG ID+D V ++ + + ++ E+ Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + +L G+ + + +K +L + ++ R Sbjct: 240 LKALTSLE--NPNSVLQMIGWLREH-GVTTDSLDKKAVKELLKTVDDKT--SKVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARK 354 Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E + D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + + R GK+ ELA GY G K M Sbjct: 415 VFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 LW D+ V+E S + + I LPS R+L Y + + Sbjct: 495 LLWWDVDNAVKTAVKEQIPTST------HGIQFEVRSGILFITLPSGRKLAYIKPRIGEN 548 Query: 579 YLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + R +YG K ENIVQAISRDIL +K + + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQLKE--FKIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPMEQ--KIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650 >gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes] gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 651 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 308/706 (43%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FERI L + W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKDK--KMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +RL P+ D D + DQ INDRG ID+D V ++ + + K+ E+ Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + +L G+ + + +K +L + T ++ R Sbjct: 240 LKALTGLE--NPNSVLQMIGWLREH-GVTTDSLDKKAVKGLLKTVDETT--AQVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354 Query: 344 IQALNRGETIADP---LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + E R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLTEEELQPLVNSWRLANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--- 575 W D+ V+E S + + + I LPS R+L Y + Sbjct: 495 LYWWDVDNAVKTAVKELIPTST------HGIQFEVKRGILFITLPSGRKLAYIKPRIGDN 548 Query: 576 -----DCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENIVQAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KNFKIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPIEQ--KLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650 >gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 658 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 206/693 (29%), Positives = 312/693 (45%), Gaps = 74/693 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L +D+ET S L + GV+ Y + I LC+Y+ DD V D +P +++ Sbjct: 20 KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D +V+ A+N+ FER LG + W CT V A T GLP SLK+ L + Sbjct: 80 ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177 K+ EGK LI F + ++ AW LF +Y RDVE + ++L Sbjct: 140 HQ--KLAEGKDLIKYFSLPTKT--GIRHQPSDDSAAWALFKQYNARDVEVETTIRRKLSH 195 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 P+ D + +DQ INDRG ID L + RK+ +LT + + Sbjct: 196 HPVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPAS 253 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L+ +L G + M++ + S L + + ++ + R S S++ K +++ Sbjct: 254 PLQLQSWLAE-QGCKISSMAKEDVDSALDTATGS--VREALELRQDLSKSSVAKYRKMAD 310 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----I 353 A +DGR G LQFYGASRTGRW+G + Q QNLPR + +++ + Sbjct: 311 ATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLY 370 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R+ I S + +VAD + IEARVLAW+AGE+ + AF NGED+Y T Sbjct: 371 PSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATA 430 Query: 414 AKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 + F P++K + E R GK+ LA GY G K M Sbjct: 431 SAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG------------------- 471 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 A+K L + + + AWRA + ++ +W D+ + Sbjct: 472 ---------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQA 510 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------- 584 I+ R + L K + I LPS RRL Y + + Sbjct: 511 ------ITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQG 564 Query: 585 --SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + TYGGKL ENIVQA +RD+L E + G+++V+ +HDE+V + Sbjct: 565 INRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSGT 624 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V +C+LM + P+WA GLP+ A GY+ Y K Sbjct: 625 TVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 211/707 (29%), Positives = 314/707 (44%), Gaps = 85/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIE+ S L K GV+ YAE + L Y+ D P+++ D ++P ++L Sbjct: 1 MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109 L D +V+ AHN+ FER+ L P ++W CT + + GLP SL Sbjct: 61 AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKR 165 L K GK LI +FC + ++ + W F +Y +R Sbjct: 121 DAVATVLKLDVQ--KDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 LT + L+ +L G L +++ + + L + T K+++ R Sbjct: 239 AQTLTGLE--NPNSPIQLKQWLASR-GCVLDSLAKAEVDAALDTATGT--VKEVLGLRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + S++ K + SDGR RG +QFYGA RTGR++G + Q QNLPR + +T Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353 Query: 344 IQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + E + S +R+ I S G + +VAD + IEARV+AW+AGE + Sbjct: 354 LVRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+D+Y T ++ F P++K + E R GK+ LA G+ G + M Sbjct: 414 QAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG----- 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+ L + + AWRA + + Sbjct: 469 -----------------------------------ALTMGLAEHELKPIVDAWRAANPHI 493 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + LW + +I++R+ + L + I LPS RRL Y + Sbjct: 494 VALWAGV------EEAAIAAIASRQSIRLRNLRFSVEAGILFIELPSGRRLAYVKPRLGE 547 Query: 578 SYL---------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + T + + TYGGKLTENIVQAI+RD+L GM K G+ IV+ V Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV + P+ F+ C LM+ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes L99] Length = 644 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 213/693 (30%), Positives = 319/693 (46%), Gaps = 72/693 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S + + G +AY +E I L AYA+DDEPVK+ D T +P +L+ Sbjct: 4 KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLT-IDEIPDTVLE 62 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L + V+ AHN+ FER K +P ++W CT V GLP+SL AL + Sbjct: 63 DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122 Query: 120 EHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFK 175 + K EGKALI FC K + + H + W F EYC++DV R + K Sbjct: 123 QE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAK 180 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ P + E+ W LDQ I D+G RID+DLV + + L + LT Sbjct: 181 KIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTGLE-- 238 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+ +L G + +++ ++ +L+ ++ + ++++L R S ++I K Sbjct: 239 NPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDLDEDVREMLLLRQEMSKTSIKKYE 297 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + A DGR+RG LQF GA+RTGRW+G + Q QNLPR + + E Sbjct: 298 KMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIAEVRKDLKAGDYEAF 357 Query: 354 A----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 + + S +R+ IA +G + D + IEARV+AW+AGE W++ F + IY Sbjct: 358 EMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIY 417 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + ++ F+ PI++V K R GKV ELALGY GG M Sbjct: 418 EASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG----------------- 460 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A++ L + + AWR + LW+ + + Sbjct: 461 -----------------------ALEMGLKENELQGIVDAWRKASPAITSLWRGVEKHAK 497 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNT 582 IS R+ L + I LPS R L Y K Y Sbjct: 498 LA------ISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYEGV 551 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 ++ TYGGKL ENIVQAI+RD L ++ G D V+ VHDE ++E ++ Sbjct: 552 TDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESES- 610 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV L +++ + SWA GLPL+ +G+ + Y K Sbjct: 611 SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643 >gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis] gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 651 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 202/706 (28%), Positives = 311/706 (44%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FERI L + W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKDK--KMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +RL P+ D D + DQ INDRG ID+D V ++ ++ + K+ E+ Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + +L G+ + + +K +L ++ T ++ R Sbjct: 240 LKALTRLE--NPNSVLQMIGWLREH-GVTTDSLDKKVVKELLKTADETT--AQVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QF+GA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354 Query: 344 IQALNRGETIA---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + E R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLKDKELRPLVDSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG--- 575 W D+ +++ + +K + I LPS R+L Y K Sbjct: 495 LFWWDVDRAVKTAIKQHIQTET------HGIQFEVNKGMLSITLPSGRKLAYVKPKIGEN 548 Query: 576 -----DCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENIVQAISRDIL MK + ++IV VH Sbjct: 549 QFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E S+ + LM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650 >gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] Length = 651 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 193/706 (27%), Positives = 302/706 (42%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L ID+ET L K GV++YAE I L A + D+ PV ++D T + +P +L Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLT-KENLPDQIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 Q L +++++ A N+ FERI L + W C+ V + GLP SL Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L E K EG +I FC K + + +H W F Y KR Sbjct: 122 EGVGTVLKLKEQKLK--EGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +L P+ D + + DQ IND G ID+D V + + + K+ E+ Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + +LT + + +L G+ + + +K +L + ++ R Sbjct: 240 LKELTGLE--NPNSVLQMIGWLREH-GVTTNSLDKKAVKELLKVVDAKT--TKVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354 Query: 344 IQALNRGETIA---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E S +R+ + S+GKK +V D + IEARVL+ +AGE W+ Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + + R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 W D+ + ++ + + K + I LPS R+L Y K + Sbjct: 495 LFWWDVDKAVKTAIKYQKQTET------HGIQFKVRKGMLFITLPSGRKLAYVKPKMGEN 548 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + R +YG K ENI+QAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DEI+ E ++ + +LM K P W + L+A+GYE Y+K Sbjct: 607 DEIIIEC--DQSQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 644 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 193/698 (27%), Positives = 308/698 (44%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIE+ S L K GV+ YAE I L AY+ D PV + D + +P + Sbjct: 1 MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D+ V+ A N+ FER + L I W C+ V + GLP SL+ A + Sbjct: 61 QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTG- 119 Query: 119 SEHLTKMEEGKALIARFCKGSI---DSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K++EGK LI FCK + + +H + W F Y +RDVE + + Sbjct: 120 -ADKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+ + E ++LDQ INDRG +D V R+ L + T + Sbjct: 179 DKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLR--TLTKL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + + +L + +++ R + S++ K Sbjct: 237 ENPNSVMQMKDWLAE-QGVETGALDKAAVHELLKSAQGD--VAEVLTIRQKLAKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + D R RG +QFYGA+R+GR++G + Q QNLP+ + + + + E Sbjct: 294 TAMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 L S+ +R+ I + +VAD + IEARV+AW+AGE W+ + FA I Sbjct: 354 LDMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ FN P++++ K R GK+ ELALGY G + M + + +++ Sbjct: 414 YEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGA-LDMGVEEEELKP 472 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + ++Q W + + Sbjct: 473 LVQAWRQANPK---------------------------------------IVQFWWAVDQ 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V++ + S + + + LPS R L Y + Sbjct: 494 AAQKAVKQRTTTST------HGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLC 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + R TYG KL ENIVQA+SRD+L M+ + GY IV+ VHDE+V E Sbjct: 548 FEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEAK 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + +V +C+LMT P W+ GL LKAEGY Y+K Sbjct: 608 --QHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643 >gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703] Length = 699 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 260/703 (36%), Positives = 369/703 (52%), Gaps = 36/703 (5%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 KL+ D ET P+ K G AYAE + + YA +D+PV WD T + MP DL YL Sbjct: 3 KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNFS 119 +D ++ A NS F+R + + + I +RW T V A +GLP L C L + Sbjct: 62 QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121 Query: 120 EHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 + K +EGKALI FCK + + T H + W+ F +Y D+EA R + K+L Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 E LW DQ INDRG ++D L + E+K L + LTD ++++ Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL ++ G+DL DM + TL+ ++ + + ++L+ RL +S ++ K TL Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKYKTLL 301 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353 + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + I+AL G Sbjct: 302 KGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLF 361 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-------- 405 + + L S +R CI+A GKKLVV+DL+ IE RVLAW+AGE+WK++AF + Sbjct: 362 DNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDE 421 Query: 406 --------EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 D+Y YA+AFN D V+K QR IGKVMEL LG+ GG F T A GL Sbjct: 422 GGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGL 481 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 DL + + +A+S + Q F + +++ AC+ +K+ WR H Sbjct: 482 DLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVFI-ACDSLKRMWRNAHPET 540 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD- 576 + W ++ + +L +RR + I LPS R + Y ++ + Sbjct: 541 VSFWSEIENTVRRAIINPKQT-----FVCRKLKIRRDGSWLRIQLPSGRSVCYPGIRIEG 595 Query: 577 --CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 SY+ NT + + R +TYGGKL EN QA +RD++ M GY+I LTVHDE+ Sbjct: 596 DKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDEV 655 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++E PDT F+ L L+ NP WA LPL A G+EA YRK Sbjct: 656 LTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698 >gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1] Length = 658 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 217/714 (30%), Positives = 324/714 (45%), Gaps = 96/714 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + ID+ETRS + + K GV+AYA+ ITL + + DD V+L+D +P D+L Sbjct: 1 MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 L DE+V+ A N FER+ + L G + W CT + Sbjct: 61 TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG--SIDSPPYDCTRANHVQAWQL 158 RT GL S+L +A AL + KM EGKALI FC ++D P + A+ + W+ Sbjct: 121 RTLGLSSTLASAGAALKLEQQ--KMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWET 178 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y K+DVEA + +RL P+ D + + LDQ INDRG R+D++LV L AQ Sbjct: 179 FKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQA 238 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L ++ +LT + Y L +L G + + +K +L K Sbjct: 239 KATLSSEMRRLTGIE--NPNSVYQLLEWLGE-QGYKSDCLDKAAVKELLKTVKDP--VKS 293 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ RL S S++ K + A SD R RG FYGASRTGRW+G + Q QNLP+ Sbjct: 294 VLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIP 353 Query: 337 EEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + + + D S +R+ + G K ++AD + IEARV+AW+ Sbjct: 354 DLTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWL 413 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 AGE W++ AFANG DIY + +K F P V+ E R GKV ELA GY G K Sbjct: 414 AGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKA 473 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M L + + + W Sbjct: 474 MG----------------------------------------GDALNLSDSELKQIVTDW 493 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R +++ W + + +++ + L + + I LPS R+L Y Sbjct: 494 RDASPNIVKFWWTVDDAVKKAIKQKITTET------HGLQFSYQSKMLFITLPSGRKLCY 547 Query: 571 SDVKG--------DCSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + +Y+ A+ + R +YG K ENIVQA++RD+L M+ Sbjct: 548 AHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQTM--RC 605 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV +HDE++ E S+ +C M + P+WA+GL L+A+GYE + YRK Sbjct: 606 CFIVGHIHDEMIIEA--DRRMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 203/698 (29%), Positives = 315/698 (45%), Gaps = 75/698 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L IDIET S + GV Y + I L AY+ D V+L D + +P+ +L Sbjct: 80 IKILSIDIETYSDNEI-TNGVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER+ K LG+ + +W CT + A GLP+SL++ L Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K+ EG LI F CK + + H W F YC RDVE + + Sbjct: 199 KHK--KLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQ 256 Query: 175 KR-----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++ L P++ ER L++ DQT+ND+G ID +L + + + +L ++ ++T+ Sbjct: 257 RKVCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN 316 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L+ +L G + +++ K + + ++ K ++ R SS +++ Sbjct: 317 LE--NPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASED--VKRVLYLRSMSSKTSV 372 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K ++ A SD +L LQFYGA +TGRW+G + Q NLPR + L + + N Sbjct: 373 KKYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKND 431 Query: 350 GE----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 E T + + S +R+ IA L V D + IEARV+AW+AGE+W++K F Sbjct: 432 FELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGS 491 Query: 406 EDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + A+ F ++ + R GK+ ELALGY+GGA K M + Sbjct: 492 GRIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADK-------- 543 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 L + WR +++LW+D Sbjct: 544 --------------------------------MGLSDPEIAQIVSGWRNSSPNIVKLWRD 571 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL 580 + + I ++ L+ R+ + I LPS R L Y K Y+ Sbjct: 572 VERAAKEAILSDRIIKLKQG----GLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYM 627 Query: 581 --NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N T Q + TYGGKL ENIVQAI+RD L E + K GY+I VHDEI++E P Sbjct: 628 SQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPT 687 Query: 639 TP-YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + ++ ++A LPLK EGY Y K Sbjct: 688 DESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725 >gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916] gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916] Length = 653 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 207/700 (29%), Positives = 307/700 (43%), Gaps = 73/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDL- 57 M L ID+ET + VG + Y E I L AYA+DDEPVK+ D +P L Sbjct: 1 MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60 Query: 58 LQYLRD-ETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 V+ A N+ FER K G+ W CT V A T GLPSSL A Sbjct: 61 FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120 Query: 116 LNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L F E KM+EGKALI FCK + + ++ W+ F EYCKRDVE R Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+ L + E++LW LDQ INDRG R+DL LV + +++L E+ + LT Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L+ ++ G ++ +++ ++ ++ S K ++ R + ++I Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKN-VKKILELRQLMAKTSI 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K T+ A D R+RG LQFYGA+RTGRW+G + Q QNLP+ + + + Sbjct: 298 KKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNGD 357 Query: 350 GET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 ET S +R+ I ++G + +VAD + IEARV+A++A E W++ F G Sbjct: 358 FETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDVFKEG 417 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DIY + +K F P++K G + Sbjct: 418 GDIYCASASKMFKVPVEKH------------------GINGHLRAKGKI----------- 448 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + F + + WR + Q W ++ Sbjct: 449 ----------AELALGYGGAGGAIRAFDKTGSIPDEDLPKLVSDWRKASPHITQFWWNVD 498 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY------ 579 + + E +++ + + I LPS R+L Y K + Sbjct: 499 KAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGKFGSDVI 553 Query: 580 ----LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + Q R TYG KL ENIVQA +RD L E M K G+ +V+ VHDE+V + Sbjct: 554 TYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVHDELVLD 613 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +CS+ ++ WA GLPLKA+GYE Y K Sbjct: 614 VSK-EIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 211/707 (29%), Positives = 330/707 (46%), Gaps = 82/707 (11%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPS----D 56 + +DIET S + + GV+AYA I L Y +D + VK+ D T+ A P D Sbjct: 2 TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L V+ A+N+ FER LG +P ++W CT+V A T GLP +L AL Sbjct: 62 FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121 Query: 117 NFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E K + GK+LI FCK + + WQLF EY ++DV A Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P++ E++LW LDQ IND G R+D+DL K+ + +++L ++ KLT Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLAS 284 + + L+M+ F+ G+D+ +++ ++ I + + D ++ R Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIRKEL 299 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 +++ K + AV DG LRG LQFYGA+RTGRW+G + Q NLP+ + + L + + Sbjct: 300 GKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLARDL 359 Query: 345 QALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +T + S +R+ I S G + VV+D + IEARV+AW+A E W++ Sbjct: 360 VKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWRLN 419 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + A+ F+ PI+ + K R GKV ELALGY GG K M Sbjct: 420 VFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAG--- 476 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ WR + Sbjct: 477 --------------------------------------TIPDDEIPMIIANWRKASPNIC 498 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 +LW++ ++E +I + L R + I LPS R+L Y D + + Sbjct: 499 KLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIEDD 553 Query: 579 YLN----------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 T + R +T+GGKL ENIVQA +RD L M+ + GY IV+ V Sbjct: 554 EKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVMHV 613 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEI+ + P+T ++ + ++M + WA+ LPL+ +GYE Y+K Sbjct: 614 HDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660 >gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31] gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31] Length = 656 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 209/702 (29%), Positives = 318/702 (45%), Gaps = 74/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA + I L AY+ D + VK+ D + A+P ++L Sbjct: 1 MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+DET + A+N++FE GI+ P ++W CT V G + L A+ Sbjct: 61 DLLKDETCIKYAYNAVFEWWCL-NMAGIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119 Query: 119 SEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K+ G ALI FC + + +H + W+LF EYC +DV E+ Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ + E LW+LD +N G R+D +LV + A R L E+ + + Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDI--TKL 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L +L G ++ ++ + T+ ++ + + AK ++ R S +++ K Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDDGK-AKRVLEIRQELSKTSVKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + EA+ D R+RG LQFYGA+RTGR++G + Q QNLPR + + + GE Sbjct: 296 KAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGEL 355 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G VV+D + IEARV+AW+AGE+W+++ F I Sbjct: 356 LEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y + ++ F PI+ ++K RA GKV ELALGYQG M + Sbjct: 416 YEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAA--------- 466 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 L + + WR + +++LW Sbjct: 467 -------------------------------DMGLTDEEMKDIVDRWRKSSKRIVELWYA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS----- 578 L V++ G + V + I LPS R+L Y + Sbjct: 496 LENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQM 555 Query: 579 -----YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +N T + TYGGKLTENIVQAI+RD L E + G+ IV VHDEI+ Sbjct: 556 QMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDEII 615 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P + + + MT+ SWAKGL L A G+ Y K Sbjct: 616 LDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655 >gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes] gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes] gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 651 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 196/706 (27%), Positives = 304/706 (43%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDF-NKEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L ++ V+ A N+ FERI L + W C+ + + GLP SL Sbjct: 62 EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +R+ P+ + + DQ INDRG ID+D V ++ + + K+ + Sbjct: 180 DVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + +L G+ + + +K +L + T ++ R Sbjct: 240 LKTLTGLEK--PNSVLQMISWLREH-GVATDSLDKKAVKELLKTVDETT--AQVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QF+GA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARE 354 Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E+ + D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + E R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 W D+ V+E S + + + I LPS R+L Y + + Sbjct: 495 LYWWDVDNAVKTAVKELLPTSTQ------NIQFEVKSGILFITLPSGRKLAYIKPRIGEN 548 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + R +YG K ENIVQAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLND--FKIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPIEQ--KLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650 >gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] Length = 668 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 198/706 (28%), Positives = 298/706 (42%), Gaps = 76/706 (10%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ- 59 L IDIETRS + K G + YA+ I L AY WDD PV++ D T + P ++ + Sbjct: 5 HLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEE 64 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 LRD V+ A+N+ FE + G P +W CT G + L A+ Sbjct: 65 ALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLP 123 Query: 120 EHLTKMEEGKALIARFC---KGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFK 175 + K+ GKALI FC K + + + + W LF EYC++DV E+ + Sbjct: 124 QDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEILR 183 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL P+ + E LW LD +N G R+D L+ + +KL + V+LT Sbjct: 184 RLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTGLDNP 243 Query: 234 SSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH-SNITQLAKDLILNRLASSGSA 288 +S + D D+ + T++ L N+ + ++ R ++ Sbjct: 244 NSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLGKTS 303 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + A R+RG Q+YGA+RTGRW+G + Q QNLPR + + Sbjct: 304 VKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELVKAK 363 Query: 349 RGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + S +R+ I S G K VVAD + IEAR +AW+AGE W + FA Sbjct: 364 NYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEVFAT 423 Query: 405 GEDIYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 IY T A+ F P+++++K R GKV LALGYQG M Sbjct: 424 HGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMG------- 476 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+K L + WR ++ + Sbjct: 477 ---------------------------------ALKMGLTEDELPDIVTRWRNANKRICG 503 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS- 578 LW + V+Q + + + + + LPS R+L Y + Sbjct: 504 LWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQENR 563 Query: 579 ---------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + T + + TYGGK+TENIVQAI+RD L ++ + G V VH Sbjct: 564 FGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVFHVH 623 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ + P +V +C LM + WA GL LK G+E+ Y K Sbjct: 624 DEVIIDAPMET--TVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667 >gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 649 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 204/704 (28%), Positives = 303/704 (43%), Gaps = 85/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET SP L GV+ YAE I L Y+ D P K+ D +P +L Sbjct: 1 MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109 Q L D TV A N+ FER+ L P + W CT V A + GLP SL Sbjct: 61 QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 A AL K G+ LI RF D ++ WQ + Y +RDV+ Sbjct: 121 DGAAKALRLPIE--KDPAGQKLIRRFSIPGKD--GIRVLPSDDPVGWQQYISYNRRDVDV 176 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +L RL P+ + E + + LDQ IND G RID L E+ ++ R +L Sbjct: 177 EVQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQL 236 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L+ +L G +L +++ +++ L +++ R S S Sbjct: 237 TGLE--NPNSPIQLKDWL-AAHGCELESLTKTEVEAALETVTGD--VAEVLRLRQDLSRS 291 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K + SD R RG +Q+ GA RTGR++G + Q QNLPR + +++ Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351 Query: 348 NRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + + S +R+ I S + +VAD + IEARVLAW+AGE+ ++AF Sbjct: 352 GNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFR 411 Query: 404 NGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 G+D+Y T ++ F P++K + E R GK+ LA GY G K M + + L + Sbjct: 412 EGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGA-LRMGLDE 470 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + +Q W Sbjct: 471 SELKPLVDAWRDANPMV---------------------------------------VQFW 491 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 D+ + ++ R V R+ + + I LPS R L Y + + Sbjct: 492 HDIEQAAI------TTVETRTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRLGENRFG 545 Query: 582 ----------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 T + TYGGKLTEN+VQA +RD+L M + G+ IV+ +HDE Sbjct: 546 MTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMHIHDE 605 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV + P SV + +LMT+ P+WA GLPL A+GYE Y K Sbjct: 606 IVVDEPTDGA-SVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648 >gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A] gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A] Length = 653 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 205/707 (28%), Positives = 303/707 (42%), Gaps = 87/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D PV D T+ P Sbjct: 1 MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER+ + ++P + W CT V GLP+SL Sbjct: 61 YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 LN K + GK LI F CK + + + + WQ F +YC RDVE Sbjct: 121 EVLNL--QNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W LDQ INDRG ++ L+L EL + +L + K+ Sbjct: 179 EMSIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L ++ AK ++ RL S + Sbjct: 239 TGLE--NPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKYATGK--AKQMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + D R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFI 353 Query: 348 NRGETIAD-------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPID--KVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGL 457 F IY + A+ F P+D K R GKV ELALGYQGG K M + G+ Sbjct: 414 VFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMGALDMGI 473 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D + V +WR + + Sbjct: 474 DESELQGLVD-----------------------------------------SWRKANPNI 492 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + WK + ++ R+ L K + I LPS R L Y + Sbjct: 493 VAFWKGCQDAAIE------TVRTRQTHLTHGLRFYMKKGFLMIELPSGRSLAYPKARVGE 546 Query: 578 SYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + + + + +TYGGKL ENIVQA +RD+L M G+ IV V Sbjct: 547 NSWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHV 606 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE++ E PD + + ++M+K WA+GL L ++G+ + Y K Sbjct: 607 HDEVIVEIPDGSGG-LKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652 >gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 643 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 209/698 (29%), Positives = 306/698 (43%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA EQ I L AY++D E V++ D +P +L Sbjct: 1 MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+D V+ A+N+ FE GI P +W CT V A LP+ L N AL Sbjct: 61 TALQDMEVIKHAYNAAFEWYCL-NCAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 +E K GK LI FC PY W+ F EY ++DV + E+ RL Sbjct: 120 AEDKKKSAVGKQLIRYFCV-----KPYKP----DAVKWKAFKEYNRQDVVSEMEIENRLS 170 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 P+ + E + W D +N G ++D +LV ++ Q ++L + V+LT + Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQLE--NPN 228 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + G L + + T++S L ++ + ++ R +++ K ++ Sbjct: 229 SPTQLLNW-VNAQGYPLENTQKATIESALKE-DLPLKVRRVLEIRQQLGKTSVKKYEAMT 286 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---- 352 + R+RG QFYGAS+TGR+SG + Q QNLPR T+ ET Sbjct: 287 NTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYLEPLAETRECVKRQDYETLKLL 346 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 S +R+ I S G + VVAD + IEARV+AW+A E W + FA IY T Sbjct: 347 FDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGKIYEAT 406 Query: 413 YAKAFNTPIDKVSKEQRAIG-----KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ F+ PI+K++K KV LALGYQGG +M Sbjct: 407 ASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMG--------------- 451 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A+K L + WRA +Q ++ LW + Sbjct: 452 -------------------------ALKMGLSEEELPEIVTRWRAANQRIVALWSAVGSY 486 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL------- 580 V++G + + ++ R + I LPS R+L Y + Sbjct: 487 ALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESLYF 546 Query: 581 ---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N T + T+GGKL ENIVQ I+RD LCE + T GY IV VHDE++ + Sbjct: 547 YTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDEVIVDAG 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V LC +M + WAKGL LK G+ + Y+K Sbjct: 607 MD--LTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642 >gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1] gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1] gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1] gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1] Length = 688 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 272/693 (39%), Positives = 361/693 (52%), Gaps = 24/693 (3%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MS LF+D+ET P+ G AYAE+A + L AYA D+ PV +WD MP DL Sbjct: 1 MSTLFLDLETYCEVPIQ-NGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59 Query: 61 LRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L DE V AHNS F+R + + + + RW T V A + LP +L + C L Sbjct: 60 LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119 Query: 120 EHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 K + GK LI FCK S TR H W F EY D+EA R + ++L Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 E LW LDQTINDRG +D DL + + +K L +T G ++++ Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q A+ ++ G+DL DM + TL+ ++ ++ ++L+ RL +S ++ K TL+ Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLA 299 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353 + VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR ++ + + I AL Sbjct: 300 KGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLF 359 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDI 408 A+ + L S +R CI+A GKKLVVADL+ IE R++AW+AGEDWK+ AF D+ Sbjct: 360 ANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDL 419 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YAKAF D V K+QR IGKVMEL LGY+GG F T A+ G+DL + Sbjct: 420 YKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAWP 479 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + +AE W +Q C+ +K+ WR H V WK+L E Sbjct: 480 SIPADIIAEAEQFLAWRTEQRLGDFGLKPKTFVVCDALKRLWRRAHPAVSSFWKELEEAA 539 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--NT 582 V G+ R R + I LPS R L Y + G SY+ N Sbjct: 540 RLAVLRPGTTYDCRTLKARR-----DGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVNQ 594 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + R +TYGGKL EN+ QA SRD+L M GY IVL+VHDE ++E D F Sbjct: 595 YSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDEF 654 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S L LM NP WA GLPL A G+EA RYRK Sbjct: 655 SAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687 >gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes MGAS315] gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage 315.6] gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1] gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus pyogenes MGAS315] gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1] gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 640 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 213/697 (30%), Positives = 315/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T + ++P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRTQLLPWLKEH-GYSASGLTKADVEKELKTAEG--ELKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPVRL------GKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545 Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + G+ +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639 >gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9] gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9] Length = 640 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 214/697 (30%), Positives = 317/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T + ++P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P+ D E D + DQ INDRG +D +LV + + L ++ +T Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LANPNSRAQLLPWLKEH-GYSANGLTKADVEQELKTAEG--ELKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545 Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GY +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] Length = 644 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 214/696 (30%), Positives = 318/696 (45%), Gaps = 77/696 (11%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +L ID+ET S P+ K G Y + I L AY++DDEPV++ D T + +P ++ Sbjct: 2 ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMT-KDPLPERVVDA 59 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L ++ + A N+ FE + KK D W CTSVLA LP+SL N AL E Sbjct: 60 LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118 Query: 121 HLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K GK LI F K + +P + + W + EY ++DV R + KRL Sbjct: 119 --AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRL 176 Query: 178 I--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E + WLLDQ IN RG ++D++LV + ++ E + + Sbjct: 177 LSLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATES--SKILTGLENP 234 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 T L+ +L G DL M + + ++L+ +I + ++ NR S+I K + Sbjct: 235 NSTMQLKEWLTARLGYDLETMRKDDVSNLLAQ-DIPSDVRKVLQNRQVLGNSSIKKYLAM 293 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET--- 352 AV SDGR+ G LQFYGA R+GRW+G V Q QNLPR + + + E Sbjct: 294 KNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDL 353 Query: 353 -IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +P + +R+ ++A +G + +VAD + IEARV+AW+A E W+ FA G DIY Sbjct: 354 LYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCA 413 Query: 412 TYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + + F+ P++K + R GKV ELALGY GG K M S Sbjct: 414 SASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKG-------------- 459 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 ++ + +AWR + + WKD Sbjct: 460 ---------------------------EIPEKELPGIIEAWRQASPRITKFWKDADSAAK 492 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----------GDCSY 579 VV+ G + + + + K + I LPS RRL Y+ + + Sbjct: 493 QVVRTGEPVRIIQG----NIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDG 548 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 ++ + R TYGGKL ENIVQA++RD L M +K GY IV +HDE+V E P Sbjct: 549 MDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIG 608 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + +M + W +GL L A G+E Y K Sbjct: 609 -VGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643 >gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] Length = 653 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 203/706 (28%), Positives = 309/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] Length = 640 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 213/697 (30%), Positives = 317/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T + ++P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLP+SL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK + + + WQ+F YC +DV Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P+ D E D ++ DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSANGLTKADVEQELKKAEG--ELKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + V WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + ++ R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545 Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GYD+V VHDE + E Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + LM++ P WA+GLPL +EGY K Y K Sbjct: 603 GSGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] Length = 653 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 203/706 (28%), Positives = 308/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L S AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKESTGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] Length = 653 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 203/706 (28%), Positives = 309/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] Length = 640 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 212/697 (30%), Positives = 316/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T + ++P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLP+SL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK + + + WQ+F YC +DV Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P+ D E D ++ DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSANGLTKADVEQELKKAEG--ELKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + ++ R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545 Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GYD+V VHDE + E Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|139473888|ref|YP_001128604.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2] gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2] Length = 640 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 214/697 (30%), Positives = 317/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T + ++P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G + +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSVNGLTKADVEQELKTAEG--ELKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + VR+ ++A + V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545 Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GY +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30] gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30] Length = 653 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 203/706 (28%), Positives = 309/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047] gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047] Length = 640 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 214/697 (30%), Positives = 315/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T + ++P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLT-RQSLPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KL--VQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G + +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWLKEH-GYSVNGLTKADVEQELKTAEG--ELKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + VR+ ++A + V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545 Query: 580 LNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GY +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47] gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47] gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH60] gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 653 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] Length = 653 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 200/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WA+GL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652 >gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] Length = 653 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224] gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224] Length = 653 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 200/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT + + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 653 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01] Length = 653 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 200/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + + K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719] gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719] gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] Length = 653 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 132] Length = 653 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 202/706 (28%), Positives = 308/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3] gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3] Length = 653 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35] gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35] Length = 650 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 200/701 (28%), Positives = 305/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 181 NKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A++ + + + +WR + ++ WK Sbjct: 465 -----------------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] Length = 653 Score = 462 bits (1188), Expect = e-127, Method: Composition-based stats. Identities = 200/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + +D R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2] gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 650 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 201/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + GY IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649 >gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] Length = 653 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE+ I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] Length = 653 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A] gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A] Length = 650 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 202/701 (28%), Positives = 306/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 3 IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 181 NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus CGS03] Length = 653 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 200/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ + G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] Length = 653 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE+ I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] Length = 650 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 200/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 653 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 199/706 (28%), Positives = 307/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ + G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +R++L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JKD6159] gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] Length = 650 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 199/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + + K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] Length = 650 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 200/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 654 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 207/710 (29%), Positives = 319/710 (44%), Gaps = 92/710 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S + + + GV+ YAE + L +Y+ D PV D +P ++L Sbjct: 1 MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL--------------GIDIPSKRWICTSVLARTNG 104 L D++V+ A N FER+ L G I + W C + +R G Sbjct: 61 SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK--GSIDSPPYDCTRANHVQAWQLFGEY 162 + SSL + K++EGK LI FC +++ + W+ F EY Sbjct: 121 MMSSLDDMGKL--LRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEY 178 Query: 163 CKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +RDVE ++ + L +P+ D + + +DQ INDRG +D K EL + +K+L Sbjct: 179 NRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKEL 238 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +LT + + ++ +L GI+ + + ++ +L+ + K++++ Sbjct: 239 FPKLKELTR--LDNPNSPAQMKDWLM-RQGIEADSLDKKSMPLLLASAPDD--VKEVLML 293 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S S++ K +T+ A DGR RG FYGA+RTGR++G + Q QNLP+ Sbjct: 294 YQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAE 353 Query: 341 TQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 T+ + + D + S +R+ I GKK VVAD + IEARV++W+AGE Sbjct: 354 TKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGET 413 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASH 454 W+++AFANGEDIY AK F P++K + R GK+ ELA GY G K M Sbjct: 414 WRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMG-- 471 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + L + + WR Sbjct: 472 --------------------------------------GTELNLTDDELYSLVEDWRKTS 493 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 +++LW D+ V+ + S++ R L + I LPS RRL Y K Sbjct: 494 PNIVKLWSDVQSVAVKVITDQSSMTFGR------LKFSYEIGILFIELPSGRRLAYVRPK 547 Query: 575 GD--------CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 + +Y + +R TYG KL ENI Q I+RD+L M IV Sbjct: 548 VEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSMAAMKDMD--IV 605 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ E +V +C LM + P WA+GL L+A+GYE + Y K Sbjct: 606 GHVHDEVIVECDPDT--TVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653 >gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 654 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 198/699 (28%), Positives = 301/699 (43%), Gaps = 70/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET SP + GV+ Y+E I L +YA+ V + D +P D++ Sbjct: 1 MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+ + V+ A+N+ FE + G ++W CT + G P L AL Sbjct: 60 LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174 ++ K + G ALI F CK + + + W + Y K+DV E + Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ + W +D +N G ID LV + + +K L E+ +LT + Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L T ++L +++ ++ + ++ ++ LAK ++ R + S++ K Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDADD--LAKKVLTIRKKLAKSSVSKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA----LN 348 ++ A DGRLRGTLQFYGA+RTGRW+G + Q QNLPR + +++ + Sbjct: 295 EMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRVG 354 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G D S +R+ IIA G L VAD + IEARV+AW++GE W+ K FA G DI Sbjct: 355 LGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGDI 414 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F P V+ R GKV ELALGYQGG K M Sbjct: 415 YCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + WR +++ W + + Sbjct: 461 --------------------------ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVEK 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHK-RDVHIVLPSSRRLVYSDVKGDCSYLN---- 581 V G ++ V + R + I LPS R+L Y D + + Sbjct: 495 AAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEAV 554 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + + E TYGGKL ENI QA++RD L + + NG ++ +HDE V E P Sbjct: 555 HFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIEVP 614 Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675 + WA+GL L A G+ Y K Sbjct: 615 KDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653 >gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11] Length = 650 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 199/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + + WQ F +YC RDVE + Sbjct: 123 --QSQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 181 NKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + + + IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL] gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL] Length = 650 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 200/701 (28%), Positives = 304/701 (43%), Gaps = 85/701 (12%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + ++ WQ F +YC RDVE + Sbjct: 123 --QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE- 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 240 -NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF 355 Query: 353 IA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 356 DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH 415 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 416 GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 E +++ + + +WR + ++ WK Sbjct: 465 -------------------------ALEMGIEEN----ELQGLVDSWRNANPNIVNFWKA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT- 582 E ++ +R+ + L K + I LPS R L Y + + Sbjct: 496 CQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQ 549 Query: 583 --------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ Sbjct: 550 VVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIV 609 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 610 EIPRGSNG-LKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649 >gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G] Length = 726 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 249/729 (34%), Positives = 345/729 (47%), Gaps = 57/729 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDEPV++WD T S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C L S K + GKALI RF K + + T H W LF +Y D+ A R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+F +L S+ E + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + LR + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILRELAPAHR---IHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL + Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357 Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY T K F D + KE R IGK EL LGY GG F A + GLDL ++ Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK------------LIGTACELVKKAWRA 512 + T W + W + Q + + + C+ +K+ WR Sbjct: 478 TMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--------RLVMRRHKRDVHIVLPS 564 H + W+D+ + ++ G V + + + LPS Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597 Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R + Y +V+ N T Q + TY GKL EN QA+ Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL AE Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717 Query: 667 GYEAKRYRK 675 G E KRY K Sbjct: 718 GAEMKRYAK 726 >gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H] Length = 726 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 249/729 (34%), Positives = 345/729 (47%), Gaps = 57/729 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDEPV++WD T S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C L S K + GKALI RF K + + T H W LF +Y D+ A R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+F +L S+ E + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + LR + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILRELAPAHR---IHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL + Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357 Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY T K F D + KE R IGK EL LGY GG F A + GLDL ++ Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMTK 477 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK------------LIGTACELVKKAWRA 512 + T W + W + Q + + + C+ +K+ WR Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--------RLVMRRHKRDVHIVLPS 564 H + W+D+ + ++ G V + + + LPS Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597 Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R + Y +V+ N T Q + TY GKL EN QA+ Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL AE Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717 Query: 667 GYEAKRYRK 675 G E KRY K Sbjct: 718 GAEMKRYAK 726 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 262/725 (36%), Positives = 354/725 (48%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAE A + L AYA + PV++WD T + +P DL L Sbjct: 10 ILWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 69 DPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG ID DLV + + ++ L + LT G ++++ Q Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T+ + + + ++L+ R +S ++ K L Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E++ I A+ G D Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 368 MALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F VSKEQR IGKV E Sbjct: 428 TGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ + W + + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQQAT--ELLEWTKANHRPTFDLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETAHT-----CCGITVQYRRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D P F+ L +LM P WA+GLPL AEG++ Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 YRYRK 725 >gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 262/725 (36%), Positives = 357/725 (49%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAE A + L AYA + PV++WD T + +P DL L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 69 DPGVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEH 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 128 AKDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG ID DLV + + ++ L + LT G ++++ Q Sbjct: 188 YAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T+ + + + ++L+ R +S ++ K L Sbjct: 248 ALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E++ I A+ D Sbjct: 308 SPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F VSKEQR IGKV E Sbjct: 428 TGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ + + ++A W + + Sbjct: 488 LALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLEWTKANHRPTFDLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT-----CCGITVQYRRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D P F+ L +LM P WA+GLPL AEG++ Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDT 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 YRYRK 725 >gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3] gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2] Length = 726 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 248/729 (34%), Positives = 345/729 (47%), Gaps = 57/729 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDE V++WD T+ S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C L S K + GKALI RF K + + T H W LF +Y D+ A R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+F +L S+ E + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + LR + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILRELAPAHR---IHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL + Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357 Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKE---QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY T K F D + KE R IGK EL LGY GG F A + GLDL ++ Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK------------LIGTACELVKKAWRA 512 + T W + W + Q + + + C+ +K+ WR Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWRE 537 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--------RLVMRRHKRDVHIVLPS 564 H + W+D+ + ++ G V + + + LPS Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597 Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R + Y +V+ N T Q + TY GKL EN QA+ Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL AE Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717 Query: 667 GYEAKRYRK 675 G E KRY K Sbjct: 718 GAEMKRYAK 726 >gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 669 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 248/672 (36%), Positives = 353/672 (52%), Gaps = 35/672 (5%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-- 90 YA +D+PV WD T + MP DL YL+D ++ A NS F+R + + + I Sbjct: 3 ITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAGGI 62 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTR 149 +RW T V A +GLP L C L ++ K +EGKALI FCK + + T Sbjct: 63 ERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRATS 122 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H + W+ F +Y D+EA R + K+L E LW DQ INDRG ++D L Sbjct: 123 KTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVLAE 182 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 + E+K L + LTD ++++ Q AL ++ G+DL DM + TL+ ++ Sbjct: 183 AAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRIAD 242 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + + ++L+ RL +S ++ K TL + VS DGRLRGTLQF GASRTGRW+G +FQP Sbjct: 243 PELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQP 302 Query: 328 QNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QNLPR +E + I+AL G + + L S +R CI+A GKKLVV+DL+ I Sbjct: 303 QNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNI 362 Query: 385 EARVLAWIAGEDWKIKAFANG----------------EDIYVTTYAKAFNTPIDKVSKEQ 428 E RVLAW+AGE+WK++AF + D+Y YA+AFN D V+K Q Sbjct: 363 EGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQ 422 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R IGKVMEL LG+ GG F T A GLDL + + +A+S + Q Sbjct: 423 RQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASVKQ 482 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 F + +++ AC+ +K+ WR H + W ++ + + Sbjct: 483 KRTFGLSEQVFI-ACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQT-----FVCRK 536 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTATSQLMRERTYGGKLTENIVQ 603 L +RR + I LPS R + Y ++ + SY+ NT + + R +TYGGKL EN Q Sbjct: 537 LKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQ 596 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663 A +RD++ M GY+I LTVHDE+++E PDT F+ L L+ NP WA LPL Sbjct: 597 AAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDLPL 656 Query: 664 KAEGYEAKRYRK 675 A G+EA YRK Sbjct: 657 SAGGFEAYHYRK 668 >gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU] gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF] gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS] Length = 735 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 254/734 (34%), Positives = 346/734 (47%), Gaps = 65/734 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWD--RTEQSA------- 52 LF+D ET S L KVG +AYAE I L +YA+DD P K+WD + Sbjct: 5 LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64 Query: 53 -MPSDLLQYLRDET---VMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 P DLL+ LR V V HN +F+R++ ++ LG+DIP + T V A + LP Sbjct: 65 SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRD 166 SL C LN L K + GKALI RFCK + + R H W+ F Y + D Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184 Query: 167 VEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + A RE++ ++ D E ++ LDQ INDRG+ +D DL +A R +L E Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 G + + LR + + + TL +L +++ A+ +I RL + Sbjct: 245 QATYGGGLTGADFLPLLRDLAPAHH---IPNAQKSTLGDLLDDADLPDEARQVIEMRLGA 301 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + +A K L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E+ L + I Sbjct: 302 ASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARGI 361 Query: 345 QALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +AL RG E D + LA+ VR CII + GKKLVVAD + +E R LAW+AGED + F Sbjct: 362 EALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDTF 421 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY T K F D V +R IGK EL LGY GG F T + + GLDL++ Sbjct: 422 RAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEEM 481 Query: 463 S---QNVKSTSTFEDWEQAESHHLWM---------QDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + V K C+ +K+ W Sbjct: 482 AVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRMW 541 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGS-----------ISARRVANVPRLVMRRHKRDVH 559 R H +Q W DL E + G+ + + Sbjct: 542 RESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWLK 601 Query: 560 IVLPSSRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENI 601 I LPS R L Y + N T Q + TYGGKL EN+ Sbjct: 602 IELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAENV 661 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661 QA+ RDIL M GY+I+L+VHDE+++ETPDT ++V L LM P+WAKG Sbjct: 662 TQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKGF 721 Query: 662 PLKAEGYEAKRYRK 675 PLKAEG+E RY+K Sbjct: 722 PLKAEGWEGYRYKK 735 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 209/704 (29%), Positives = 310/704 (44%), Gaps = 74/704 (10%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56 KL+IDIET S + G++ YAE + L AYA DD V+L D T+ + Sbjct: 5 KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + + L + + AHN+ FE K+ L I I RW CT V G P+SL+ AL Sbjct: 65 VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172 + E K+ GKALI F CK + + H + W+LF EYCKRDVE RE Sbjct: 125 DMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVARE 184 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + K L + G W+ D +N RG +D LV + + + + I ++T Sbjct: 185 IDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITGVD- 243 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + R + +L ++ ++ ++K++L S++T A+ ++ ++ K Sbjct: 244 -NPRSRAQVLDWLNDTLDEEITSLNAASVKALLE-SDLTDDARAVLTAWQGLGKTSTKKY 301 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 TL A D R+RG LQFYGASRTGRW+G + QP NLPR + + + Sbjct: 302 ETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYNLNQAGELVKAGHKKD 361 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I S +R+C + G K V+ D + IEARVLAW+AGE W ++ F I Sbjct: 362 IELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGDGKI 421 Query: 409 YVTTYAKAFNTPID-----KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y T A+ +N + R GK+ LALGYQG + M + Sbjct: 422 YEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMGAS--------- 472 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 +D+ + +AWR + + +LW+ Sbjct: 473 -------------------------------EDEFTDDELRGLVRAWRVANPCIAELWRY 501 Query: 524 LTEGFACVVQEGGSISARR--VANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCS 578 V + + + + ++ I LPS R L Y + G Sbjct: 502 TEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGINLAIGLPSGRELYYHNPVIVDGAIY 561 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 Y + + +E+TYGGKL ENIVQAI+RD+L + + TK IVL VHDE+ Sbjct: 562 YTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIVLHVHDEV 621 Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675 V E V L + + PSWA+GLPLK E + + Y+K Sbjct: 622 VVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665 >gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 262/725 (36%), Positives = 358/725 (49%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 188 YTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+KEQR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ ++ +A W + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + WK L ++ + + M+ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG++ Sbjct: 661 AACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQT 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 HRYRK 725 >gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53] gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53] Length = 726 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 261/725 (36%), Positives = 355/725 (48%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA + L AYA PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GI IP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+K+QR IGKV E Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ + +A W + + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQ--EATELLEWTKANHRPTFGLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 HRYRK 725 >gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 726 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 259/725 (35%), Positives = 354/725 (48%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 S E LW LDQTINDRG +D DL + + + L LT G ++++ Q Sbjct: 188 YSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+KEQR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ ++ +A W + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG++ Sbjct: 661 AACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQT 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 HRYRK 725 >gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] Length = 631 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 192/685 (28%), Positives = 293/685 (42%), Gaps = 85/685 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L +L G+D+ ++ + T++ L + AK ++ RL S + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK--AKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +++ + + +WR + ++ Sbjct: 468 ------------------------------ALEMGIEEN----ELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK E ++ +R+ + L K + I LPS R L Y + Sbjct: 494 NFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 579 YLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKN 654 DE++ E P + + ++M K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKP 631 >gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 261/725 (36%), Positives = 358/725 (49%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+K+QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ + +A W + + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQ--EATELLEWTKANHRPTFGLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 661 AACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 HRYRK 725 >gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 726 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 261/725 (36%), Positives = 356/725 (49%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GI IP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G D Sbjct: 308 SRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+K+QR IGKV E Sbjct: 428 SGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ + +A W + + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQ--EATELLEWTKANHRPTFGLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 HRYRK 725 >gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 258/728 (35%), Positives = 355/728 (48%), Gaps = 67/728 (9%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G + QP NLPR S+ ++ I A+ G D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+K+QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ ++ +Q Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQQA-----MEALQWTKANQRPTF 542 Query: 497 KLIGTA---CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 L A C++ K+AWR H + W+ L + + + ++ Sbjct: 543 GLSDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQY 597 Query: 554 HKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISR 607 + + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SR Sbjct: 598 SRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667 D+L M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YEAKRYRK 675 +E RYRK Sbjct: 718 FETHRYRK 725 >gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a] gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a] Length = 763 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 243/766 (31%), Positives = 342/766 (44%), Gaps = 94/766 (12%) Query: 1 MS---KLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS 55 M +LF+D ET S L KVG +AYAE I +C YA D+ V+ WD TE MP Sbjct: 1 MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPR 60 Query: 56 DLLQYLRDETVMC---VAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +L + LR + V N LF+R++ ++ GID+P + T ++A + LP SL Sbjct: 61 ELRKALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDM 120 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEAT 170 C L K + GKALI RFCK + + TR H + W F Y D+ A Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180 Query: 171 RELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 RE++ R+ + E ++ L+DQ INDRG+ +D+DL + + +++L E+ + Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERF 240 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 G + + ALR + + + TL +L + K LI RL +S +A Sbjct: 241 GGKLTGNDFLPALRDLA---PAFTIHNAQKSTLNDLLEDPDFPDEGKVLIEMRLGASSTA 297 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 K N L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E S++ + + Sbjct: 298 STKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREG 357 Query: 349 RGETIADPLGLA-----------------------SDCVRSCIIASNGKKLVVADLAGIE 385 + + VR CII + GKK VVAD + +E Sbjct: 358 ESDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVE 417 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIGKVMELALGYQ 442 R LAWIAGE + F G DIY T K F + K+ R IGK EL LGY Sbjct: 418 GRGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYG 477 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GG F A + GLDL ++ +K T W A+ + + + + K Sbjct: 478 GGVAAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDER 537 Query: 503 ------------CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-------------- 536 C+ +K+ WR H + W +L + C ++ G Sbjct: 538 PTYILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGK 597 Query: 537 -SISARRVANVPRLVMRRH-------KRDVHIVLPSSRRLVYSDV--------------- 573 ++ R + I LPS R + Y + Sbjct: 598 KALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKK 657 Query: 574 ----KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + N T Q + TYGGKLTENIVQA+ RDIL M GY+IVL+VH Sbjct: 658 RTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVH 717 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+++E PDT ++ LC+LM P WAKG PL AEG RYRK Sbjct: 718 DELITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 106/710 (14%), Positives = 195/710 (27%), Gaps = 172/710 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET S + +A I ++A + Sbjct: 332 KTFSFDTETTSLNYM----------EAEIVGVSFAVEPGKAAYVPVAHDYMGAPEQLERD 381 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + + L L D + N ++ + G+ + T + + Sbjct: 382 KVLAALKPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIA-EDTMLESYVLNSTANRHD 439 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L + GK + + + G Y D Sbjct: 440 MDTLASKHLGRETIHFEDIAGKGAKQL---------------TFNQISLEQAGPYAAEDA 484 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L L P E L + + RG +D + + +A+ Sbjct: 485 DITLQLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAER 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQ 272 +L+E+ + + L+ + G T + +L Sbjct: 545 MLELEEEAYEKAGQKF-NLGSPKQLQEIFYEKLGFDIIKKTPKGQPSTAEPVLQELAEKY 603 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++L S + L E ++ GR+ + Q A TGR S QN+P Sbjct: 604 ELPRVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVA-ATGRLSSSDPNLQNIP 662 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G KL+ AD + IE R++A Sbjct: 663 ------------------------VRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAH 698 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G++ +KAF+ G D++ T A+ FN D+VS EQR K + Sbjct: 699 LSGDEGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAIN--------------F 744 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + + Sbjct: 745 GLIYGMS------------------------------AFGLARQIHVERSEAQSYIDKYF 774 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 ++ GVL + + RRL Sbjct: 775 ERYPGVLNYMNRIRAEAQDTGY--------------------------VETLFGRRLYLP 808 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDI 624 D++ L A R +Q + DI+ M + Sbjct: 809 DIRSSNRNLQQAA---ERTAINAP------MQGTAADIIKRAMLAVDAWLEGDSAPPAKM 859 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE++ E ++ +V L +M+ +PL E + Sbjct: 860 IMQVHDELILEVEESAVEAVKEKLTQIMSSAAD--LNVPLLVEAGVGNNW 907 >gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 259/725 (35%), Positives = 358/725 (49%), Gaps = 61/725 (8%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET SP P+ GV AYAEQA L AYA D PV++WD T + MP +L L Sbjct: 10 ILWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALH 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 69 NPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQ 127 Query: 123 TKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 128 AKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHN 187 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 188 YTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRD 247 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 248 ALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCT 307 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D Sbjct: 308 SGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDV 367 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K++AF + + Sbjct: 368 MALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWH 427 Query: 409 --------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVME 436 Y YA +F V+K+QR IGKV E Sbjct: 428 SGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQE 487 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY GG F A+ +DL+ ++ +A W + + Sbjct: 488 LALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANHRPTFGLS 545 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 546 DRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRA 600 Query: 557 DVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDIL 610 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 601 WLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVL 660 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 661 AACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFET 720 Query: 671 KRYRK 675 RYRK Sbjct: 721 HRYRK 725 >gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] Length = 643 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 199/701 (28%), Positives = 303/701 (43%), Gaps = 85/701 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + +D+ET S + K GV+ YA E I +Y+ + V L D T + P L Sbjct: 1 MR-IDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLT-KEEFPEFLK 57 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNA 112 ++ + A N++FERI K W V A+ GLP+SL+ Sbjct: 58 NHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERC 117 Query: 113 CLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVE 168 L E K GKALI F CK + + + + W+ +GEY +DV Sbjct: 118 ASYLGLEEQ--KDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVV 175 Query: 169 ATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++L P+ D E D + DQ INDRG +D +LV + + L ++ Sbjct: 176 TQMAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKA 235 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L +L G +++ ++ L + K ++ +L ++ Sbjct: 236 ITG--LANPNSRAQLLPWLKEH-GYSANGLTKADVEQELKTAEG--ELKRVLELKLQTAM 290 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 291 SSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVK 350 Query: 347 LNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + VR+ ++A +G V+D + IEARV+AW AGE W++ F Sbjct: 351 KRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 410 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 411 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG---------- 460 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ + + + WR ++ ++Q WK Sbjct: 461 ------------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWK 490 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------ 576 D+ ++ I + +L R K + I LPS R L Y+ K + Sbjct: 491 DVQRAAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 544 Query: 577 -CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 Y + TYGGKL ENIVQA +RDIL E + G+ +V VHDE + Sbjct: 545 KIIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAII 604 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 605 E---GSGLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 226/612 (36%), Positives = 326/612 (53%), Gaps = 24/612 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL YL D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A + + + + +K+ T C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC---SYLNT--ATSQ 586 +Q G +L +RR K + I LPS R L Y + + +Y+ T + + Sbjct: 543 IQSPGI-----AFKCRKLSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597 Query: 587 LMRERTYGGKLT 598 R +TYGGK Sbjct: 598 WERLKTYGGKSC 609 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 117/721 (16%), Positives = 208/721 (28%), Gaps = 186/721 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L ID ET S P+ A + + + Sbjct: 454 LAIDTETTSLDPML----------ADLAGLSLCAEPGKAFYVPVGHTSGEGQDLFEGKGL 503 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + L L D +++ + N ++ I+ K+ G+++ T +L+ Sbjct: 504 LPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRP--LDDTLLLSYVL 560 Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQ 157 + L G I + Sbjct: 561 DAGLTDHGMDVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKAT-------------- 606 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207 EY D + T L++ L P E R + + + RG ID L+ Sbjct: 607 ---EYAAEDADVTLRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLG 663 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKS 263 +L AQ+ + + +I +L + L LF G+ + T Sbjct: 664 RLSSDFAQDMARYEAEIYELAGEKF-NLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAG 722 Query: 264 ILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321 +L + IL+ + + L ++ GR+ + A+ TGR S Sbjct: 723 VLEDLAEQGVDLAARILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYALA-ATTTGRLS 781 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P A +R IA G+KLV AD Sbjct: 782 SSEPNLQNIP------------------------VRNEAGRKIRRAFIAPPGRKLVSADY 817 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA IA AFA DI+ T ++ F P++ + E R K + + Y Sbjct: 818 SQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIY 877 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + FE + ++ + + E + + G Sbjct: 878 G-----ISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMDDTKKKARENGYVETIFGR 932 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 C + + Sbjct: 933 KCH---------YPRIKASN---------------------------------------- 943 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 PS R L + + +N +Q + DI+ M + Sbjct: 944 -PSERAL------NERAAINAP------------------IQGSAADIIRRAMIHMEAAL 978 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKR 672 K ++L VHDE++ E PD ++ + +M + P A +PL+ + A+ Sbjct: 979 AAEKLSAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAAQN 1038 Query: 673 Y 673 + Sbjct: 1039 W 1039 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 225/612 (36%), Positives = 326/612 (53%), Gaps = 24/612 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL Y D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ ++ Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A S + + + + +K+ C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC---SYLNT--ATSQ 586 +Q G +L +RR K + I LPS R L Y + + +Y+ T + + Sbjct: 543 IQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597 Query: 587 LMRERTYGGKLT 598 R +TYGGK Sbjct: 598 WERLKTYGGKSC 609 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 704 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 228/701 (32%), Positives = 337/701 (48%), Gaps = 31/701 (4%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L++D ET S + L +VG YAE A L AYA D P ++WD T M +L + D Sbjct: 5 LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTA-EEMHDELYHAMDD 63 Query: 64 ETVMCVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 AHN+ F+R + + I +RW C+ +A ++ LP L + C L Sbjct: 64 ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + K+ +GK L+ F + D+ TR H W+ F +Y D+ A RE +R+ Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183 Query: 180 LSDGERDL--WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + + W LDQ IN RG+++D L +E+ ++ +L+ G Q Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFT-PGQ 242 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 R+YL G +L + GT + +L + +++I +AS+ ++ K L Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAALDP 302 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE----EILTQTIQALNRGETI 353 AVS DGR RG LQF GASRT RW+G +FQPQNLP + E + ++ Sbjct: 303 AVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALFF 362 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED------ 407 + + L + +R C++A+ GKKLVVADL+ IE RVLAWIA E+WK+KAF + Sbjct: 363 DNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPDL 422 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +T + P + K + A GKV +LA GYQGG ++T A GL + F ++ Sbjct: 423 YNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTIQ 482 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + +A + E D++ A E K AWRA+H + W L Sbjct: 483 QMVPAQHVAKAWENLASWGHPQLESLEIDEIEWVASETCKLAWRARHPATSKFWYALGGA 542 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------------- 574 ++ GS+ R V R ++ + + LPS R L Y + Sbjct: 543 AKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAYW 602 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 G+ S T Q +R T+GGK+T N Q I+RDIL M A GY VL+VHDE ++ Sbjct: 603 GEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEALT 662 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E PDT F+ L ++ NP+WA LPL A G+EA RY+K Sbjct: 663 EVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 102/698 (14%), Positives = 191/698 (27%), Gaps = 153/698 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 D ET S Y++ A I ++A + Sbjct: 354 FAFDTETTSLD---------YSK-AQIVGVSFAVTPGKAAYVPLAHDYPGVPDQLDRSEI 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L + + N ++ + GI + T + + ++ Sbjct: 404 LEKLRPLLENPRKAKLGQNLKYDTHVLANH-GIALRGIA-HDTMLESYVLNSTATKHNMD 461 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L + GK I + PY A+ Sbjct: 462 DLAKEYLGVETIHYEDVAGKGAKQIGFQEVSIDQAAPYAAEDADITLQLHQVLNAKLAQH 521 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 EL+ D E L + I + G ID ++ + ++ + L++ L Sbjct: 522 PRLLELYS------DMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQHAHDL 575 Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + ++ L+ + T +S+L + LIL + Sbjct: 576 AGQTF-NLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQELALDYPLPKLILEYRS 634 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + L + + GR+ + A TGR S QN+P Sbjct: 635 LSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIA-ATGRLSSSDPNLQNIP----------- 682 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA GKK+V AD + IE R++A ++ ++ +KAF Sbjct: 683 -------------IRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAF 729 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + +D++ T A+ F ++V+ + R K + L Y + Sbjct: 730 SEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINFGLIY-----GMSSFGL--------- 775 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + L + + + A++ GV Sbjct: 776 ------------------------------AQQLGLSRSQAQSYIDLYFARYPGVKNYMD 805 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + E I RRL ++ + Sbjct: 806 RIREQAREQGY--------------------------IETLFGRRLYLPEINSRNAARRQ 839 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKN--GYDIVLTVHDEIVSET 636 R +Q + DI+ M K +++ VHDE+V E Sbjct: 840 YA---ERTAINAP------MQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEI 890 Query: 637 PDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + S+M +PL + + Sbjct: 891 AEEHVDDCAAKIRSIMCAAAD--LDVPLIVDIGIGNNW 926 >gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1] Length = 645 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 185/682 (27%), Positives = 286/682 (41%), Gaps = 80/682 (11%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 A++ + V+ D +P +L + L D V A N+ FER++ ++ LGI P K W Sbjct: 3 AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRA 150 CT LA G L + E K EGK LI F K + +P A Sbjct: 63 RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + W F +Y RDVE + RL P+ D E D++ LDQ IND G ID + Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L + ++ E++ +T + + L +L G D+ T+ ++ + Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREA 239 Query: 269 NI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + A ++ RL S+ +++ K T+ +A DGR R +LQF GASRT RW+G Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299 Query: 326 QPQNLPRQERSEEILTQ---------TIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 Q QNLPR + E +T + +P+ C+RS I + G K Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLYVGEPMDALVGCIRSAFIPTPGHKF 359 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 +VADL+ IE+ V+ W+ W + A D+Y + A + P ++ R+ K Sbjct: 360 IVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEETKP-HRSKAKPAT 418 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 L GY+ G GL + M Sbjct: 419 LGAGYRLGGGHMDENGKKTGL---------------------WGYAENMGVH-------- 449 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + E +A+R +++ W DL I R+ L++ K Sbjct: 450 -MTQKEAEESVQAFRDLCPEIVRAWYDLENAVFK------VIRTRQAVVWGCLIIEYTKP 502 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYL-----------------------NTATSQLMRERTY 593 + I LPS R++ Y + + + ++ + ++ Sbjct: 503 FLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSH 562 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 GGKL ENIVQA++RD+L EG+K A + G+ IV+ +HDEIV+E P+ +V L S M Sbjct: 563 GGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAA 622 Query: 654 NPSWAKGLPLKAEGYEAKRYRK 675 WA+GLPL A G+E YRK Sbjct: 623 ELPWAEGLPLGAAGWEGYFYRK 644 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + QA + ++A + A Sbjct: 346 IAVDTETTSLDYM----------QAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREAT 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L + + V N ++ + GI + + T + + + Sbjct: 396 LAKLKPLLENPDIKKVGQNLKYDMSVLANA-GIQLKGVAF-DTMLESYVFNSVASRHDMD 453 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A + Y D + Sbjct: 454 GLALKYLGHKNISFEEIAGKGAKQL---------------TFNQIALEQAAPYAAEDADI 498 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I RG ID L+ + E +A++ Sbjct: 499 TLRLHQHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKID 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + T L+ F G + T + +L + Sbjct: 559 ELEQHAHEIAGEPF-NLSSTKQLQELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L ++ GR+ + A TGR S QN+P Sbjct: 618 PKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANA-ATGRLSSSDPNLQNIP-- 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A GK+++ AD + IE R++A ++ Sbjct: 675 ----------------------IRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLS 712 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ ++AFA G+DI+ T A+ F+ + V+ EQR K + L Y Sbjct: 713 QDEGLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMS-----AFGL 767 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + + + E L G L Sbjct: 768 ARQLDIPRNEAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYL-------- 819 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 820 -PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 855 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 A ++ T G +Q +++ VHDE+V Sbjct: 856 ---------AIQHWIKTETQGE------IQ--------------------MIMQVHDELV 880 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM S +PL AE + Sbjct: 881 FEVDADKADALKEKVCELMAAAAS--LDVPLLAEAGLGDNW 919 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVLQ + + RRL D+ Sbjct: 795 YPGVLQYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL + + RRL D+ Sbjct: 795 YPGVLGYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQNILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L +E + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 169/706 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + + L ++ R T + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLI 765 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + ++ Sbjct: 766 YGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFERY 795 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL+ + + RRL D+K Sbjct: 796 PGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIK 829 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628 A + +Q + DI+ M +++ V Sbjct: 830 SSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQV 880 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E +V + LM +PL E + + Sbjct: 881 HDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYATEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQITLEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 KL++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 KLEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 201/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51 + +D ET + A + ++A ++ E+S Sbjct: 409 KLIAVDTETDGLDYM----------SANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 458 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + L L + + V N F+ +F + GI++ + T +L+ T ++ Sbjct: 459 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNM 516 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + GEY D + Sbjct: 517 DDLAKRYLGHQTIGFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 561 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + I + Sbjct: 562 VTMKLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERL 621 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L+ +L + T L+ LF G+ + T + +L + Sbjct: 622 TALEMQAHELAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHE 680 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+ GR+ + + TGR S QN+P Sbjct: 681 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 738 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA +G K++ AD + IE R++A + Sbjct: 739 -----------------------IRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 775 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y + Sbjct: 776 SNDAGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYG-----MSSFG 830 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + Sbjct: 831 LSRQ---------------------------------------LGISRADAQRYMDLYFQ 851 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV D+ E + RRL + Sbjct: 852 RYPGVQTFMHDIREKAKAQGY--------------------------VETLFGRRLYLPE 885 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + +++ Sbjct: 886 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEITRDDPDIHMIMQ 936 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL + + + Sbjct: 937 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 981 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGRGENW 924 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDANV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIESGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALDEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 340 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 389 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 390 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 447 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 448 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 492 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 493 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 552 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 553 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 612 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 669 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 706 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 707 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 752 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 753 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 782 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 783 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 816 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 817 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 867 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 868 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 912 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 234 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 283 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 284 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 341 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 342 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDSDV 386 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 387 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 446 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 447 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 505 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 506 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 562 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 563 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 600 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 601 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 646 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 647 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 676 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 677 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 710 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 711 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 761 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 762 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 806 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F+ P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1] Length = 698 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 233/694 (33%), Positives = 324/694 (46%), Gaps = 55/694 (7%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----DETVMCVAHN-SLFERILFKKTLGID 87 AYA+DDEPV++WD T S MP DL + LR + + V HN S+F+R++ K G D Sbjct: 8 AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYD 146 IP I T + A + LP SL C L S K + GKALI RF K + + Sbjct: 68 IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLD 204 T H W LF +Y D+ A RE+F +L S+ E + LDQ INDRG+++D+ Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 L E + + + +L E+ + G + LR + + + TL + Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRELAPAHR---IHNAQKSTLNDL 244 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L+ ++ A +I RL ++ +A K N L SSD R RG +Q+ GA RT R++G Sbjct: 245 LADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKG 304 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETI--ADPLGLASDCVRSCIIASNGKKLVVADLA 382 FQPQNL R ++ L + I AL +G D L + VRSCII G K VVAD + Sbjct: 305 FQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADYS 364 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE---QRAIGKVMELAL 439 +E R LAW+AGE+ + F G DIY T K F D + KE R IGK EL L Sbjct: 365 NVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGL 424 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK-- 497 GY GG F A + GLDL ++ + T W + W + Q + + Sbjct: 425 GYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEK 484 Query: 498 ----------LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + C+ +K+ WR H + W+D+ + ++ G V Sbjct: 485 DDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVK 544 Query: 548 --------RLVMRRHKRDVHIVLPSSRRLVYS------------------DVKGDCSYLN 581 + + + LPS R + Y +V+ N Sbjct: 545 FSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGEN 604 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 T Q + TY GKL EN QA+ RD+L + N NGY IVL VHDEI+ ETPD P Sbjct: 605 QLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPE 664 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++V L LM + P WA+G PL AEG E KRY K Sbjct: 665 YNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQSY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHRDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNPL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 192/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA I ++A + A+ Sbjct: 323 FSFDTETTSLNYM----------QAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQLDRDAV 372 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V + +++ + + GI++ T + + + Sbjct: 373 LNALKPLLEDTGKAKVGQHLKYDKNVLARY-GIELKGIA-HDTMLASYVLNSVAGRHDMD 430 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + + Y D + Sbjct: 431 SLAERYLDRHTVHYEDIAGKGAKQL---------------TFNQIDLEQAAPYAAEDADI 475 Query: 170 TRELFKRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P E L + I G ++D D + + +A+ + Sbjct: 476 TLQLHRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMR 535 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QL 273 + + + G + L+ LF G+ T + +L Sbjct: 536 QAE-EAAHNEAGESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHP 594 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 IL A S + L + + GR+ + A TGR S QN+P Sbjct: 595 LPQWILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP- 652 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G K++ AD + IE R++A + Sbjct: 653 -----------------------IRSEEGRRIREAFVAEPGHKILAADYSQIELRIMAHL 689 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G++ I+AF G DI+ T ++ F P+D+V EQR K + Sbjct: 690 SGDETLIRAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVNF--------------G 735 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 736 LIYGMS------------------------------AFGLAKQLGISRGEAQGYVDTYFE 765 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + E RRL + Sbjct: 766 RYPGVRDYMERTREQAREQGYVETEF--------------------------GRRLYLPE 799 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 ++ R +Q + DI+ M +V+ Sbjct: 800 IQSRNVPRRQHA---ERTAINAP------MQGTAADIIKRAMIAIHDALEKELPDVRMVM 850 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ L M + + L E A + Sbjct: 851 QVHDELVFEVPEDQAKQTQALVETKMVEAAD--LRVALDVESDIADSW 896 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNPL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 191/701 (27%), Gaps = 159/701 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 ID ET S Y E A I + A + Sbjct: 341 AIDTETTSL---------KYME-AEIVGISLAVAPNEACYIPLAHDYAGAPEQLDRDWVL 390 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 + L DET V N ++ + K I++ T + + ++ + Sbjct: 391 QKMKPLLEDETPKKVGQNLKYDAHVLKNY-DIELNGIA-HDTMLESYVLNSTASKHNMDD 448 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + GEY D + T Sbjct: 449 LAKHYLGHECIDFESIAGKGAKQL---------------TFNQIPVEQAGEYAAEDADIT 493 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + + G ++ D + + I Q ++ Sbjct: 494 LRLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQE 553 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L+ + G + + T L+ F + T + +L + Sbjct: 554 LERKAHDIA-GEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEEVLVELSHDYELP 612 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +IL + + L ++S + T + TGR S QN+P Sbjct: 613 KVILEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSSDPNLQNIP---- 668 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R A G LV AD + IE R++A ++G+ Sbjct: 669 --------------------IRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGD 708 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF NG+DI+ T A+ V EQR K + L Y Sbjct: 709 KGLLDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMS-----AFGLAR 763 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + F+ + + + ++ + + L G L Sbjct: 764 QLGIGRSEAQEYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYL---------P 814 Query: 516 GVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + + +A + + M + Sbjct: 815 EINSRNGMRRQAAERTAINAPMQGTAADIIKRAMIKMHQW-------------------- 854 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Q + D+ +++ VHDE++ Sbjct: 855 ---------------------------IQESAHDV-------------HMIMQVHDELIF 874 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E PD +V + S+M +PL + ++ Sbjct: 875 EVPDGQLDAVSAEIKSIMEAAAD--LDVPLLVDVGHGDNWQ 913 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 308 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 357 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 358 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 415 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 416 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 460 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 461 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 520 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 521 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 579 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 580 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 636 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 637 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 674 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 675 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 720 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 721 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 750 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 751 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 784 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 785 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 835 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 836 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIELGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 109/707 (15%), Positives = 199/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 ID ET S + A + ++A + + Sbjct: 346 FAIDTETTSIDYMA----------AELVGLSFAVEAGKGAYLPVAHDYEGAPVQLDRDTV 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D V N ++ + K GI + + T + + ++ Sbjct: 396 LAKLKPLLEDTAPRKVGQNLKYDMSVLAKY-GIALNGIAF-DTMLESYCFNSTAGRHNMD 453 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + Y D + Sbjct: 454 DMALKYLGHKTIHFEDIAGKGAKQ---------------KTFNQIPLEEAAPYAAEDADI 498 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P ER L + + G ID D + + IA Sbjct: 499 TLRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLD 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 L++ ++ G + + T L+ F G + T + +L + Sbjct: 559 SLEQQAHEIA-GEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEEVLQELALDYPL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + + + L + V GR+ + + TGR S QN+P Sbjct: 618 PKIILEHRSLAKLKNTYTDKLPQLVKPSGRVHTSYHQAV-TATGRLSSSDPNLQNIP--- 673 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G KL+ D + IE R++A ++ Sbjct: 674 ---------------------IRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQ 712 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + ++AFA G+DI+ T A+ F D V+ EQR K + Sbjct: 713 DKGLLEAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNF--------------GLI 758 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + ++ Sbjct: 759 YGMS------------------------------AFGLAKQLDIGRAEAQEYIDRYFHRY 788 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL+ + RRL ++ Sbjct: 789 PGVLEYMDRTRAQAHDKEYVETLM--------------------------GRRLHLPEI- 821 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLT 627 + + R +Q + DI+ + M ++ +++ Sbjct: 822 NARNKMRQ--QAAERTAINAP------MQGTAADIIKKAMLLVADYLSQQAEDEIHLIMQ 873 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + LC LM++ +PL AEG + Sbjct: 874 VHDELVFEVREGVAEQHKDALCELMSQAAE--LDVPLLAEGGLGDNW 918 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 203/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51 + +D ET + A + ++A ++ E++ Sbjct: 357 KLIAVDTETDGLDYM----------SANLVGISFALENGEAAYLPLHLDYLGAPKTLEKN 406 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 S L L + + + N F+ +F + GID+ + T +L+ T ++ Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNM 464 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + GEY D + Sbjct: 465 DDLAKRYLGHQTISFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 509 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L + E L + + G ID D + I + Sbjct: 510 VTMKLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERL 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L+ L + T L+ LF G+ + T + +L + Sbjct: 570 TALEMQAYALAGQPF-NLASTKQLQEILFGKLGLPVLQKTPKGAPSTNEEVLEELAYSHE 628 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+ GR+ + + TGR S QN+P Sbjct: 629 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 A +R IA +G K++ AD + IE R++A + Sbjct: 687 -----------------------IRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y + VF Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPA-- 781 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + + Sbjct: 782 ------------------------------------------RLGISRADAQRYMDLYFQ 799 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V D+ E + RRL + Sbjct: 800 RYPNVQTFIHDIREKAKAQGY--------------------------VETLFGRRLYLPE 833 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLT 627 + + R +Q + DI+ M +++ Sbjct: 834 INSSNAMRR---KGTERVAINAP------MQGTAADIIKRAMIKLDGITRDDPDIHMIMQ 884 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL + + + Sbjct: 885 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 308 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 357 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 358 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 415 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 416 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 460 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 461 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 520 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 521 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 579 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 580 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 636 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 637 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 674 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 675 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 720 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 721 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 750 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 751 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 784 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 785 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 835 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 836 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 880 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 113/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D+ET S L A I ++A + + Sbjct: 352 FAFDLETDSLDTL----------SANIIGLSFATAPGVAAYLPVAHDYLDAPAQLDRNDV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L + + V N F+R + K I++ R+ T + + + Sbjct: 402 LARLKPLLENPQALKVGQNLKFDRGVLKSY-DIELQGIRF-DTMLESYALNSVIGRHDMD 459 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + A + G Y D + Sbjct: 460 TLALRWLNHKTVTFEEIAGKGKKQL---------------TFNQIALEQAGHYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + Sbjct: 505 TLQLHLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + L+ LF GI + T + +L+ + Sbjct: 565 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEHRGLSKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA+ +DI+ T A+ F +DKVS EQR K + L Y + Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMS-----SFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + + + Sbjct: 774 SRQLNIGAG---------------------------------------EAKKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVLQ + E A + RRL D+ Sbjct: 795 YPGVLQYMESTRELAAEKGY--------------------------VSTLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ M +++ Sbjct: 829 NASNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLEQQTSPDVKMIM 879 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + +LM + A +PL+ + + Sbjct: 880 QVHDELVFEVRADAVEAASAQIRALMEGSM--ALDVPLRVDIGVGDNW 925 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L +E + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 194/706 (27%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + D ET S + QA + + A + + Sbjct: 344 VAFDTETTSLNYM----------QAELVGVSVAIEAGKAAYIPVAHDYEDAPEQLDRDWV 393 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L +L DE V + ++ + I + ++ T + + + Sbjct: 394 LEQLKPWLEDEGKAKVGQHLKYDANVLNNY-DITLRGIKF-DTMLESYVFNSTGTRHDMD 451 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + + Y D + Sbjct: 452 SLSSKFLGHSTVKFEDIAGKGAKQ---------------KTFNQIDLEQAAFYAAEDADI 496 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + ++P + E L + + G ID D + IA + Sbjct: 497 TLRLHQAILPKLEKTPELVSVFSDIELPLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQ 556 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +++ + + L+ LF G+ T + IL Sbjct: 557 EVEIKAHEEAGQEF-NLSSPKQLQEILFEKQGLPVIKKTPKGQPSTAEPILQELAENYEL 615 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LI+ + + + L E + GR+ + + TGR S QN+P Sbjct: 616 PRLIMEHRSLAKLKSTYTDKLPEMIQHTGRIHTSYHQAV-TATGRLSSTDPNLQNIP--- 671 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G KLV AD + IE R++A ++ Sbjct: 672 ---------------------IRTQEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQ 710 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA+ ED++ T A+ F +D V+ EQR K + Sbjct: 711 DKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINF--------------GLI 756 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + + ++ Sbjct: 757 YGMS------------------------------AFGLAKQLGISRPEAQKYVQRYFERY 786 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + E RRL ++K Sbjct: 787 PGVRTYMETTRENAKEKGYVETIF--------------------------GRRLYLPEIK 820 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628 + + A R +Q + DI+ M G +++ V Sbjct: 821 ARNAMMRQAA---ERTAINAP------MQGSAADIIKRAMIKMHNWLADTDLGVKMIMQV 871 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE++ E + + + +M + +PL E + Sbjct: 872 HDELIFEVAEKDLEAAQAKIIDIMQNSTE--IDVPLLVEAGVGDNW 915 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 201/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51 + +D ET + A + ++A ++ E+S Sbjct: 374 KLIAVDTETDGLDYM----------SANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKS 423 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + L L + + V N F+ +F + GI++ + T +L+ T ++ Sbjct: 424 TALAALKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNM 481 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + GEY D + Sbjct: 482 DDLAKRYLGHQTIGFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 526 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + I + Sbjct: 527 VTMKLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERL 586 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L+ +L + T L+ LF G+ + T + +L + Sbjct: 587 TALEMQAHELAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEDVLEELAYSHE 645 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+ GR+ + + TGR S QN+P Sbjct: 646 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 703 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA +G K++ AD + IE R++A + Sbjct: 704 -----------------------IRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 740 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y + Sbjct: 741 SNDAGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYG-----MSSFG 795 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + Sbjct: 796 LSRQ---------------------------------------LGISRADAQRYMDLYFQ 816 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV D+ E + RRL + Sbjct: 817 RYPGVQTFMHDIREKAKAQGY--------------------------VETLFGRRLYLPE 850 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + +++ Sbjct: 851 INSSNAMRR---KGAERVAINAP------MQGTAADIIKCAMIKLDEITRDDPDIHMIMQ 901 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL + + + Sbjct: 902 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 946 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF I + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQSIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEHADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A + + + Sbjct: 350 VAVDTETTSLDYMR----------AKLVGISLSTAPGEACYIPFAHDYMGAPEQLQPEFA 399 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L YL D V N ++ + + GI + + T + + + Sbjct: 400 LEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GISLRGITF-DTMLESYVLDSVASRHDMD 457 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L GK + A G Y D + Sbjct: 458 SLALNYLGEETIKFADVAGKG---------------AAQLTFNQVALDQAGPYAAEDADI 502 Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G +D L+ + + ++ Sbjct: 503 TLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRIERTGALVDDTLLFQQSQELSARLG 562 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274 +L+ + +L G + L LF I ++ + T + +L + Sbjct: 563 ELETEAWELA-GQQFNLASPKQLGEILFEKLQIPVLKKTAKGAPSTKEEVLQELALDYPL 621 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L ++S GR+ + G + TGR S QN+P Sbjct: 622 PKVLLEHRGLAKLKSTYTDKLPTMINSVTGRIHTSYHQSG-TATGRLSSSDPNLQNIP-- 678 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR +A+ G KLV AD + IE R++A ++ Sbjct: 679 ----------------------IRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHLS 716 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ G+DI+ T A+ F ++V+ +QR K + Sbjct: 717 EDPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINF--------------GL 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 763 IYGMS------------------------------AFGLARQLGINRKQAAEYIELYFTR 792 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV ++ A + RRL ++ Sbjct: 793 YPGVQNYMNNIRHSAAEQG--------------------------FVETVFGRRLYLPEI 826 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 A R +Q + DI+ M N I++ Sbjct: 827 NASNGMRRQAA---ERTAINAP------MQGTAADIIKLAMINVHNWLETSDLTSKIIMQ 877 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P++ V L LM +PL + + Sbjct: 878 VHDELVLEVPESEMEEVQKGLNDLMESAAELL--VPLVVDIGVGDNW 922 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 111/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S A + ++A + Sbjct: 352 FAFDTETDSLDN----------HSANMVGLSFACEPGVAAYVPVAHDYIGAPEQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ W T + + T + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAW-DTMLESYTLDSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 460 SLSERWLKHKTITFEEIAGKGKNQL---------------TFNQIDLEQAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ K E I Sbjct: 505 TLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + + T L+ LF GI + + T + +L + Sbjct: 565 ELEQKAHDIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAFA G+DI+ T A+ F P++ VS EQR K + Sbjct: 719 RDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + A + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM + A +PL E + Sbjct: 880 VHDELVFEVHKDALDAVSKKIHELMESSM--ALDVPLLVEVGSGDNW 924 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGPAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 192/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D+ET S + A I A A + + Sbjct: 335 FAFDLETSSLNYM----------DAEIVGVALAVGAGEAAYVPLAHEGPDTPTQLDRDRV 384 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D V N ++ + + I + + T + + + Sbjct: 385 LAALKPLLEDPDRAKVGQNLKYDMSVLARY-DIHLEGVAY-DTMLESYVLDSTASRHDMD 442 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + + GK A + Y D + Sbjct: 443 SLALKYLGRATVKYEDVCGKGAKQ---------------IPFAQVAVETATRYAGEDADI 487 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + G ++D L+ + +A+ Sbjct: 488 TLRLHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMA 547 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QL 273 L++ + +G + ++ LF G+ + T +S+L Sbjct: 548 ALEQRAHEEAEGPF-NLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAARGYE 606 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL + + + L + GR+ + A TGR S QN+P Sbjct: 607 LPRLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP- 664 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G KL+ AD + +E R++A + Sbjct: 665 -----------------------VRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHL 701 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G++ +AFA G DI+ T A+ F ++V EQR K + Sbjct: 702 SGDEGLRQAFAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINF--------------G 747 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 748 LIYGMS------------------------------AYGLARQLGIERGEAQAYVDRYFE 777 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL + Sbjct: 778 RYPGVKEYMDRTRAEARERGY--------------------------VETLFGRRLYLPE 811 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + R +Q + D++ M + +V+ Sbjct: 812 INARNRQRREYA---ERTAINAP------MQGTAADLIKRAMVAVDAWLTEAHSKARMVM 862 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P +V L M A +PL+ + A + Sbjct: 863 QVHDELVLEVPAADVPAVAEGLRERMQAAGELA--VPLEVDVGVADDW 908 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +D + AF + D++ T A+ F P++ VS +QR K + Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ + +PL E + Sbjct: 863 LQVHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +D + AF + D++ T A+ F P++ VS +QR K + Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLLESGLDARVI 862 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ + +PL E + Sbjct: 863 LQVHDELVLEVREDLVEQVREGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 108/708 (15%), Positives = 195/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + +A I ++A + + Sbjct: 344 FAFDTETTSLDYM----------EARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLSEAVV 393 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D T + V N ++R + ID+ + T + + + Sbjct: 394 LGKLKPLLEDPTCLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMD 451 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + Y D + Sbjct: 452 SLAKRYLGVETTSFEDIAGKGVKQL---------------TFNQIELEQAAPYAAEDADI 496 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + + G ID L+ + + I Sbjct: 497 TLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLA 556 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L++ +L + L LF G+ + + T + +L+ T Sbjct: 557 ELEKQAHELAGQEF-NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYEL 615 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ + + L + GR+ + A TGR S QN+P Sbjct: 616 PQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 672 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I S G KLV AD + IE R++A ++ Sbjct: 673 ----------------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLS 710 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA G+DI+ T A+ F ID V+ + R K + Sbjct: 711 GDKGLLTAFAEGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINF--------------GL 756 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 757 IYGMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFER 786 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 787 YPGVLEYMERTRQQAEAQGY--------------------------VETLFGRRLYLPDI 820 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626 K + L R +Q + DI+ M N +++ Sbjct: 821 KSRNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDSWIRGIEDESIRMLM 871 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + M+ +PL E + Sbjct: 872 QVHDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 917 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 338 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANASTPIAMQGVAY-DTMLESYVLDSTATRHDM 446 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 447 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 491 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 492 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 551 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 552 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 610 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 611 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 669 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G KL+ AD + IE R++A Sbjct: 670 ------------------------IRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAH 705 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF + D++ T A+ F P++ VS +QR K + Sbjct: 706 LAKDEGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 751 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 752 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 781 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 782 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 815 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 816 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLRESGLDARVI 866 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ S +PL E + Sbjct: 867 LQVHDELVLEVREDLVEQVREGIRPLMSGAAS--LDVPLVVEAGIGSNW 913 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 192/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D ET S + +A I ++A + + A+ Sbjct: 333 FAFDTETTSLNYM----------EADIVGLSFAVERGEAAYVPLAHSYPGAPAQLDRDAI 382 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D + N ++ + + I + + T + + + Sbjct: 383 LAALKPLLEDPAKPKLGQNLKYDASVLARY-DIHMQGIAF-DTMLESYVLDSTGTRHDMD 440 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + G Y D E Sbjct: 441 SLALKYLGRSTTHFEDVAGKGAKQ---------------ITFDQVGIEQAGPYAAEDAEV 485 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P E L + + G +D + + + + + Sbjct: 486 TLALHETLWPKLQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQ 545 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 L+E+ L G + + L LF + + T + +L + Sbjct: 546 ALEEEAHNLA-GQVFNLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEEVLQELALDYPL 604 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ S + L ++ GR+ + + TGR S QN+P Sbjct: 605 PKLLIEHRGLSKLKSTYTDKLPGMINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP-- 661 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G ++V AD + IE R++A ++ Sbjct: 662 ----------------------IRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLS 699 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AF D++ T A+ F +D VS EQR K + Sbjct: 700 KDAGLLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINF--------------GL 745 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + +L + + + Sbjct: 746 IYGMS------------------------------AFGLARQLRLDRGEAQRYIDVYFER 775 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + RRL ++ Sbjct: 776 YPGVREYMDNTRALAHEQGY--------------------------VETLFGRRLYLPEI 809 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 A R +Q + DI+ M + +++ Sbjct: 810 NVRNKNRQQAA---ERTAINAP------MQGTAADIIKRAMITVDRWIADDSVDAKMIMQ 860 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V LC M+ A +PL E + Sbjct: 861 VHDELVLEVAEDQLDPVCDELCKQMSAAAELA--VPLLVEVGRGANW 905 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPSVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 197/706 (27%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S L QA I ++A + Sbjct: 339 FAFDTETTSLDYL----------QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNV 388 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + L L + + N ++ + GI + + T + + + + Sbjct: 389 LAVLKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMAF-DTMLESYVLNSTTKHDMDS 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + + + Y D + T Sbjct: 447 LAQIYLQKTTITFEDVAGKGKKQL---------------SFNQIPLEHATPYACEDADIT 491 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L D E L + + G +ID L+ + +A ++ Sbjct: 492 LQLHQNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQ 551 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L++ + + L+ LF + T +L I Sbjct: 552 LEQAAYEEAGTEF-NLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAVEVLEELAIDYPLP 610 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + S +TL + ++ GR+ + + TGR S QN+P Sbjct: 611 QLILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSYHQAV-TTTGRLSSTNPNLQNIP--- 666 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G L+ AD + IE R++A ++ Sbjct: 667 ---------------------IRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSE 705 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ + A GEDI+ A+ F+ +D+V+ EQR K + Sbjct: 706 DEKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVN--------------FGLM 751 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ Q A + + ++ A+ A++ Sbjct: 752 YGM------------------------------QAFGLAKQLGIERHQAQIYMDAYFARY 781 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV D+ RRL ++K Sbjct: 782 PGVKAYMDDMRVLAKQQGYVETVF--------------------------GRRLYIPEIK 815 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628 T + R + +Q + D++ M +++ V Sbjct: 816 ---------TRHIGRRQAAERTAINAPMQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQV 866 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E +T + MT+ +PL + K + Sbjct: 867 HDELVFEIAETVIEEAKVAIIEAMTQVAE--LKVPLIVDIGIGKNW 910 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 100/710 (14%), Positives = 200/710 (28%), Gaps = 172/710 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + A + ++A ++ Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + L L D + N F+ + + GI++ T + + Sbjct: 394 WVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L + GK + + G Y D Sbjct: 452 MDSLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLEQAGPYAAEDA 496 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L L P + E L + + G +D L+ IA Sbjct: 497 DITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAAR 556 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272 ++++ ++ + + L+ LF G+ + T + +L + Sbjct: 557 LDEIEKKAFEIAEQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDY 615 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L + + L + V+ GR+ + + TGR S QN+P Sbjct: 616 PLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP 674 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A +G K++ D + IE R++A Sbjct: 675 ------------------------VRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAH 710 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G+ + AF +G+DI+ T A+ + I++VS EQR K + Sbjct: 711 LSGDKALLDAFRHGKDIHAATAAEILSLDIEEVSSEQRRRAKAINF-------------- 756 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 757 GLIYGMS------------------------------AFGLAKQLDMGRNEAQNYMNVYF 786 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 ++ GVL+ + + + RRL Sbjct: 787 ERYPGVLEYMESTRNAASEQGY--------------------------VETLFGRRLYLP 820 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDI 624 D+K R +Q + DI+ M + + Sbjct: 821 DIKSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDGWVQQQPEGNVRL 871 Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE+V E ++ +V ++ +LM + + +PL A+ + Sbjct: 872 LMQVHDELVFEVKESALEAVTASVKALMEQAAT--LDVPLIADTGYGDNW 919 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYVPVAHDYLDAPEQISRERV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + I++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 K + + +Q + DI+ M K +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEKPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDVVAKKIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 104/710 (14%), Positives = 198/710 (27%), Gaps = 172/710 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + A + ++A ++ Sbjct: 344 KAFAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPVAHDYLDAPAQLDRD 393 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + + L L D + N F+ + + GI++ T + + Sbjct: 394 WVLAQLKPLLEDPNQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHD 451 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L + GK + G Y D Sbjct: 452 MDSLALRYLEHKNISFEEIAGKGKKQL---------------TFNQIDLAQAGPYAAEDA 496 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L L P + E L + + G +D L+ IA Sbjct: 497 DITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAAR 556 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272 +L++ ++ D + L+ LF G+ + T + +L + Sbjct: 557 LDELEKKAFEIADQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDY 615 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 LIL + + L + V+ GR+ + + TGR S QN+P Sbjct: 616 PLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP 674 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A +G K++ D + IE R++A Sbjct: 675 ------------------------VRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAH 710 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G+ + AF +G+DI+ T A+ I++VS EQR K + Sbjct: 711 LSGDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQRRRAKAINF-------------- 756 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 757 GLIYGMS------------------------------AFGLAKQLDMGRNEAQDYMNVYF 786 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 ++ GVL+ + + + RRL Sbjct: 787 ERYPGVLEYMESTRNTASEKGY--------------------------VETLFGRRLYLP 820 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDI 624 D+K R +Q + DI+ M + + Sbjct: 821 DIKSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDNWVQQQPQDEVRL 871 Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE+V E ++ SV + +LM + + +PL A+ + Sbjct: 872 LMQVHDELVFEVKESALESVTAEVKALMEQAAT--LDVPLIADAGFGDNW 919 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 29 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +D + AF + D++ T A+ F P++ VS +QR K + Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ + +PL E + Sbjct: 863 LQVHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 204/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S L A + ++A + + Sbjct: 390 VAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLPRDRV 439 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE+++ V N F+R + + GI++ T + + + Sbjct: 440 LELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGI-VFDTMLESYILDSVSGRHDMD 497 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + + GK + + G Y D + Sbjct: 498 SLSSRWLKHTTITFEQIAGKGKNQL---------------TFNQIDLEQAGRYAAEDADV 542 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ + IA + Sbjct: 543 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLA 602 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 603 ELEQKAHEIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 661 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L + ++ GR+ + + TGR S QN+P Sbjct: 662 PKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 718 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 719 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 756 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ VS EQR K + Sbjct: 757 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GL 802 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 803 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 832 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 833 YPGVLEYMERTRKQAKEQGY--------------------------VETLDGRRLYLPDI 866 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 + + +Q + DI+ M + +++ Sbjct: 867 NASNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQ 917 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM + +PL E + Sbjct: 918 VHDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 962 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +D + AF + D++ T A+ F P++ VS +QR K + Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ + +PL E + Sbjct: 863 LQVHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 109/708 (15%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA + ++A Sbjct: 333 FSFDTETNSLDYI----------QAQVVGLSFAVAPGDAAYLPLAHDYLGAPEQLDREQT 382 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D T + V + F+R + + GI + + T + + ++ Sbjct: 383 LAKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GIHLQGIAF-DTMLESYVLNSTASRHNMD 440 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN++ + GK + + + Y D + Sbjct: 441 DLAKKYLNYTTQTFEDVAGKGVKQL---------------TFNQVELEKAAFYAAEDADI 485 Query: 170 TRELFKRLIPL-----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + G ID L+ + I Sbjct: 486 TLRLHQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQQIEVRLA 545 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ ++ G + L LF + + T + +L Sbjct: 546 ELESQAHEIAGGPF-NLGSPKQLGEVLFEKLQLPVIKKTPKGAPSTAEEVLQELAYDYPL 604 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + S + L ++ GR+ + + TGR S QN+P Sbjct: 605 PKLLLEHRSLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 661 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K+V AD + IE R++A ++ Sbjct: 662 ----------------------VRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLS 699 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D ++AFA+G+DI+ T A+ N + V+ EQR K + Sbjct: 700 EDDGLLQAFAHGQDIHRATAAEIMNITPEAVTSEQRRNAKAINF--------------GL 745 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 746 IYGMS------------------------------AFGLAKQLGIPRGEAQRYMDRYFER 775 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL + E + RRL D+ Sbjct: 776 YPGVLTYMERTREQAEQAGY--------------------------VETLFGRRLYLPDI 809 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVL 626 K L R +Q + DI+ M +V+ Sbjct: 810 KAKNMGLR---KAAERAAINAP------MQGTAADIIKRAMIKLADWIKTCDNGTIRMVM 860 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + V + M S +PL + Sbjct: 861 QVHDELVFEVREDKLDAYVPVIRQYMMDAAS--LKVPLDVGIGVGDNW 906 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 200/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +D + AF +G D++ T A+ F P++ VS +QR K + Sbjct: 702 LAKDDGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINF-------------- 747 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ + +PL E + Sbjct: 863 LQVHDELVLEVREELVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 29 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 203/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 467 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 511 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 571 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 572 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 771 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 801 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ E + RRL D Sbjct: 802 RYPSVQQFMTDIREKAKTQGY--------------------------VETLFGRRLYLPD 835 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIHHDPNIEMIMQ 886 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 931 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 205/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S L A + ++A + + Sbjct: 351 VAVDTETDSLDNLT----------ANLVGISFATEPGLAAYIPVAHDYLDAPDQLSRDRV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE+++ V N F+R + + GI++ + T + + + Sbjct: 401 LELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVSGRHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + + GK + + G Y D + Sbjct: 459 SLSSRWLKHTTITFEQIAGKGKNQL---------------TFNQIDLEQAGRYAAEDADV 503 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ + IA + Sbjct: 504 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLT 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 564 ELEQKAHEIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L + ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 680 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ VS EQR K + Sbjct: 718 RDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 764 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 794 YPGVLEYMERTRKQAKEQGY--------------------------VETLDGRRLYLPDI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 + + +Q + DI+ M + +++ Sbjct: 828 NASNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQ 878 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM + +PL E + Sbjct: 879 VHDELVFEVHKDDVEAVSQKIHELMENSMQ--LDVPLLVEVGSGVNW 923 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 207/700 (29%), Positives = 308/700 (44%), Gaps = 73/700 (10%) Query: 1 MSK-LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 M K L IDIET S L GV+ YA I L +Y + DEPV D + +PS + Sbjct: 1 MKKPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKV 60 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L+ LRD + VAHN+ FER+ L G + W CT V GLP SL AL Sbjct: 61 LRALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKAL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K +EGK LI F CK + + H + W+ +G+Y + DVE Sbjct: 121 GLDVQ--KDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETG 178 Query: 173 LFKRL---IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + +L L E + DQ IND G +D+ V + +L + +K+ + +LT Sbjct: 179 ISDKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG 238 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ---LAKDLILNRLASSG 286 S + L+ + G + + + + L+ + Q +I + G Sbjct: 239 VE--SVTKVQQLKAWA-AAQGYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGG 295 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +A+ K + + + DG ++G L+F GA T RW+G Q QNLPR + L Q Sbjct: 296 AAVAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQI 355 Query: 347 LNRGET-----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + +G+T +P+ + + VR+ + + V+D + IEARV+AW AGE W +KA Sbjct: 356 VAKGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKA 415 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F +GEDIYV T +K ++ + ++ R GK LALGYQGGA M Sbjct: 416 FEDGEDIYVATASKMYHVTGE-EAEAMRQKGKQATLALGYQGGANALIVMG--------- 465 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + WR + ++ LW Sbjct: 466 -------------------------------ALRAGIPEEELPELVQLWRKANPNIVNLW 494 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCS 578 + + + GG+ + + + + + LPS R+L Y D K S Sbjct: 495 HTVDKAARMAINNGGAKRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKIS 554 Query: 579 YLNTATSQLMR--ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 YL R TYGGKLTEN+VQA SRD+L + G V VHDE ++ Sbjct: 555 YLKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIV 614 Query: 637 PDTPYFSVGTLCSLMTK-NPSWAKGLPLKAEGYEAKRYRK 675 P+ + + +LMT P WA GLPL +EG K YRK Sbjct: 615 PEGT--KIEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S A++A + ++A + A+ Sbjct: 354 FAFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 S L L D + + ++ + GI++ + T + + + Sbjct: 404 LSALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMAF-DTMLESYVLDATATRHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK A + G Y D + Sbjct: 462 SLALKYLGRGTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L+ + E L + I G +D L+ + + + Sbjct: 507 TLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLV 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQL 273 +L+ + + + L L+ G ++ + T +S+L+ Sbjct: 567 QLEREAFDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYP 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +I+ + S + L + ++ GR+ + + TGR S QN+P Sbjct: 626 LPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A+ G KL+ AD + IE R++A + Sbjct: 684 -----------------------IRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A + + AF N D++ T A+ F P+++VS +QR K + Sbjct: 721 AQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + A Sbjct: 767 LIYGMS------------------------------AFGLAKQIDVGRKEAQEYIDRYFA 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + A + RRL + Sbjct: 797 RYPGVLAYMERTRTQAAEQGY--------------------------VETLFGRRLYLPE 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + + R +Q + DI+ M ++L Sbjct: 831 INSKNGAMR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVIL 881 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V +C LM+ +PL E + Sbjct: 882 QVHDELVLEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNNW 927 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 200/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + A+ Sbjct: 331 IAFDSETTSLD----------AQQAELVGLSFAVAPLEAAYIPLAHSYMGVPDQLDRDAV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D V ++ ++ + GI++ + T + + + Sbjct: 381 LAALRPILEDPARAKVGQHAKYDMNVLA-HYGIEVRGVAY-DTMLESYVLDSTATRHDMD 438 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK A + G Y D + Sbjct: 439 SLALKYLGQGTIRFEDIAGKGAKQL---------------TFDQIALEQAGPYAAEDADV 483 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + I G +D L+ + + ++ + Sbjct: 484 TLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLELGEKLQ 543 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-QL 273 +L+ + +L + L L+ G+ ++ + T +S+L+ Sbjct: 544 QLEREAHELAGEPF-NLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLAEQGYP 602 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +I+ + + + L + ++ GR+ + + TGR S QN+P Sbjct: 603 LPQVIMRHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 660 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G +LV AD + IE R++A + Sbjct: 661 -----------------------IRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHL 697 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A + + AF N D++ T A+ F + VS +QR K + Sbjct: 698 AQDTSLLHAFRNDLDVHRATAAEVFGVAPEAVSADQRRSAKAINF--------------G 743 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + A Sbjct: 744 LIYGMS------------------------------AFGLARQIGVERKEAQAYIDRYFA 773 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + A + RRL + Sbjct: 774 RYPGVLAYMERTRAQAAEQGY--------------------------VETLFGRRLYLPE 807 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + L R +Q + DI+ M ++L Sbjct: 808 IHSKNGALR---KAAERTAINAP------MQGSAADIIKRAMVTVDAWLLESGLDARMIL 858 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + ++ L M+ A +PL E + Sbjct: 859 QVHDELVLEVREDQVEALKAGLLPRMSGAA--ALDVPLLVEAGVGGNW 904 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 29 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 557 VHDELVFEVHKDDLEAVAKKIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 105/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + + A+ Sbjct: 334 IAFDTETTSID----------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D + V ++ ++ + I + + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAY-DTMLESYVLDSTATRHDM 442 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + GK A + G Y D + Sbjct: 443 DSLALKYLGHSTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDAD 487 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 L+ L + L L+ G+ ++ + T +++L+ Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDF 606 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +I+ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 607 ELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 665 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 666 ------------------------IRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +D + AF + D++ T A+ F P++ V+ +QR K + Sbjct: 702 LAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINF-------------- 747 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 748 GLIYGMS------------------------------AFGLAKQIGVERKEAQAYIDRYF 777 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 778 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 811 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 ++ + R +Q + DI+ M ++ Sbjct: 812 EIHSKNGAMR---KAAERTAINAP------MQGTAADIMKRAMVAVDNWLQESGLDARVI 862 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + LM+ + +PL E + Sbjct: 863 LQVHDELVLEVREDLVEQVCEGIRPLMSGAAT--LDVPLVVEAGVGSNW 909 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 100/708 (14%), Positives = 198/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + A + ++A ++ + Sbjct: 346 FAFDTETDGLDYMT----------ANVVGVSFAIEEGKAAYVPLAHDYLDAPAQLDRDWV 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D + N F+ + + GI++ T + + + Sbjct: 396 LEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIEMQGI-VFDTMLESYVFNSVVGRHDMD 453 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 454 SLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLEQAGPYAAEDADI 498 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L P + E L + + G +D L+ IA Sbjct: 499 TLRLHNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDSMLLGAQSTEIAVRLD 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 ++++ ++ + + L+ LF G+ + T + +L + Sbjct: 559 EIEKKAFEIAEQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + + L + V+ GR+ + + TGR S QN+P Sbjct: 618 PKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 675 ----------------------VRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLS 712 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ + I+ VS EQR K + Sbjct: 713 GDKALLDAFRHGKDIHAATAAEILSLDIENVSSEQRRRAKAINF--------------GL 758 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 759 IYGMS------------------------------AFGLAKQLDMGRNEAQNYMNVYFER 788 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 789 YPGVLEYMESTRNAASEQGY--------------------------VETLFGRRLYLPDI 822 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ M + +++ Sbjct: 823 KSRNGLRR---KAAERAAINAP------MQGTAADIIKLAMIAVDDWVQQQPEGDVRLLM 873 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ +V ++ +LM + +PL A+ + Sbjct: 874 QVHDELVFEVKESALEAVTASVKALMEQAA--MLDVPLIADTGYGDNW 919 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] Length = 605 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 29 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERA 78 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 181 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 472 YPGVLEYMERTRAQAKELGY--------------------------VETLDGRRLYLPDI 505 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 198/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S A++A + ++A + A+ Sbjct: 337 FAFDTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAV 386 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D + + ++ + GI++ + T + + + Sbjct: 387 LGALKPLLEDPAKTKICQHGKYDMNVLM-HYGIEMRGMAF-DTMLESYVLDATATRHDMD 444 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK A + G Y D + Sbjct: 445 SLALKYLGRGTIRFEDIAGKGAKQL---------------TFDQIAIEQAGPYAAEDADV 489 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L+ + E L + I G +D L+ + + + Sbjct: 490 TLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLV 549 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQL 273 +L+ + + + L L+ G ++ + T +S+L+ Sbjct: 550 QLEREAFDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYP 608 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +I+ + S + L + ++ GR+ + + TGR S QN+P Sbjct: 609 LPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 666 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A+ G KL+ AD + IE R++A + Sbjct: 667 -----------------------IRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHL 703 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A + + AF N D++ T A+ F P+++VS +QR K + Sbjct: 704 AQDAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINF--------------G 749 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + A Sbjct: 750 LIYGMS------------------------------AFGLAKQIDVGRKEAQEYIDRYFA 779 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + A + RRL + Sbjct: 780 RYPGVLAYMERTRTQAAEQGY--------------------------VETLFGRRLYLPE 813 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + + R +Q + DI+ M ++L Sbjct: 814 INSKNGAMR---KGAERTAINAP------MQGTAADIIKRAMIAVDGWLQDSGLDARVIL 864 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V +C LM+ +PL E + Sbjct: 865 QVHDELVLEVREDLVEQVREAICPLMSGAAQ--LDVPLLVEAGVGNSW 910 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 191/700 (27%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + D ET S PL A + +++ T Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + + L + + V N +++ + GI + T + + + + Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRTHGMDD 450 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + A + EY D + T Sbjct: 451 LAMRHLGVQTITYEQVAGKGAKQ---------------VSFSQVALEQASEYAAEDADVT 495 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P E + + TI G ID D++ + I Q+ Sbjct: 496 LQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMA 555 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L++ +L + L+ LF GI + T + +L + Sbjct: 556 LEQQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLP 614 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++L + + L ++ GR+ + A TGR S QN+P Sbjct: 615 KVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIP--- 670 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G +V AD + IE R++A ++ Sbjct: 671 ---------------------VRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQ 709 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 +D + AFA GEDI+ T A+ F D VS EQR KV+ L Y Sbjct: 710 DDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMS-----AFGLA 764 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L +++ + F + + +++ + G + Sbjct: 765 QNLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWV--------- 815 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + G Sbjct: 816 PEINSPNGMRRAGAERAAINAPMQGT---------------------------------- 841 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 KL VQ + K +++ VHDE+V Sbjct: 842 ----------------AADLIKLAMIAVQG---------WLESEKLATKLIMQVHDELVL 876 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L LM +PL AE + Sbjct: 877 EVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 107/704 (15%), Positives = 193/704 (27%), Gaps = 163/704 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------- 50 ID ET S P+ A + + + + + Sbjct: 362 AIDTETTSLDPML----------AQLVGISLSVEPGEACYIPVGHRGPDVAGMENNGQLS 411 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--S 107 + + + +L D++ + N ++ +F G+ + T + + Sbjct: 412 RDTVLARMRAWLEDDSKPKLGQNIKYDIHVFANH-GVTLCGVA-QDTMLESYVLASHRNH 469 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + + L N + GK EY D Sbjct: 470 GMDSLAERLLNLKTITYEEVCGKGASQIG---------------FDQIDLARATEYAAED 514 Query: 167 VEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 + T L +++ P + E + ++ Q I G ID + + + Q Sbjct: 515 ADVTLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQ 574 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT 271 L++ + + LF + +V + T + +L Sbjct: 575 RMLSLEQAAYDAAGQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAED 633 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L+L+ + + L + V+ + GR+ + A TGR + QN+ Sbjct: 634 YPLPKLLLDYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATA-VTGRLASTEPNLQNI 692 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IAS G +V AD + IE R++A Sbjct: 693 P------------------------VRTEEGRRIREAFIASPGSVIVSADYSQIELRIMA 728 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 I+G++ ++AFANGEDI+ T ++ F + VS EQR KV+ L Y Sbjct: 729 HISGDENLLRAFANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMS-----A 783 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L +++ + F + + + E + + G L Sbjct: 784 FGLASNLGIEREAAKHYIDRYFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWL----- 838 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + Sbjct: 839 ----PDINGGSGPRRQAAERAAINAPMQGT------------------------------ 864 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 KL+ VQ K ++ VHD Sbjct: 865 --------------------AADLIKLSMIAVQG---------WLERDKLQTRQIMQVHD 895 Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P V L LM +PL AE + Sbjct: 896 ELVLEVPQDELDVVKTRLPELMCSVAQ--LRVPLVAEVGSGANW 937 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 191/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + +A + ++A + + Sbjct: 346 FAFDTETTSLNYM----------EAELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETL 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L V + ++ + + GI++ + T + + + Sbjct: 396 LEKMKPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIEF-DTMLESYVLNSTATRHDMD 453 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 454 SLADRYLGLKTIKFEDIAGKGKKQL---------------TFNQIELEQAAPYAAEDADI 498 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + + D ER L + I G +D ++ + +A+ Sbjct: 499 TLRLHQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSIELAERMV 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ + + L+ LF I + T + +L + Sbjct: 559 ELERQAYDIAGKEF-NLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQELALDYPL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + S + L ++ GR+ + + TGR S QN+P Sbjct: 618 PKLILEHRSLSKLKSTYTDKLPLMINPGTGRIHTSYHQAV-TATGRLSSTDPNLQNIP-- 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G K+V AD + IE R++A ++ Sbjct: 675 ----------------------VRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLS 712 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ G DI+ T A+ F +D+VS +QR K + Sbjct: 713 QDQGLLDAFSKGADIHRATAAEVFKVELDQVSDDQRRSAKAINF--------------GL 758 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + Sbjct: 759 IYGMS------------------------------AFGLAKQLGIARKDAAQYIEHYFET 788 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV D+ + RRL ++ Sbjct: 789 YPGVQHYMDDIRAKAQEQGY--------------------------VETLFGRRLYLPEI 822 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 K + A R +Q + DI+ M K +++ Sbjct: 823 KARNAMRRQAA---ERTAINAP------MQGTAADIIKRAMVTVDKWLAESDFDVRMIMQ 873 Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E DT S V + M +PL E + + Sbjct: 874 VHDELVFEVRDTQVDSFVEAVKDKMATAAD--LDVPLLVEAGVGENW 918 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 191/700 (27%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + D ET S PL A + +++ T Sbjct: 343 VCFDTETTSLDPLT----------AKLVGMSFSIKAGEAAYLPLTHDYPGAPDQLPFAAT 392 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + + L + + V N +++ + GI + T + + + + Sbjct: 393 LARIKPLLENPAIKKVGQNLKYDKHVLANH-GIVLNGIA-HDTLLQSYVLESHRTHGMDD 450 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + A + EY D + T Sbjct: 451 LAMRHLGVQTITYEQVAGKGAKQ---------------VSFSQVALEQASEYAAEDADVT 495 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P E + + TI G ID D++ + I Q+ Sbjct: 496 LQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMA 555 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L++ +L + L+ LF GI + T + +L + Sbjct: 556 LEQQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPSTDEDVLQELALDYPLP 614 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++L + + L ++ GR+ + A TGR S QN+P Sbjct: 615 KVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVA-VTGRLSSSDPNLQNIP--- 670 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G +V AD + IE R++A ++ Sbjct: 671 ---------------------VRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQ 709 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 +D + AFA GEDI+ T A+ F D VS EQR KV+ L Y Sbjct: 710 DDGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMS-----AFGLA 764 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L +++ + F + + +++ + G + Sbjct: 765 QNLGIERQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWV--------- 815 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + G Sbjct: 816 PEINSPNGMRRAGAERAAINAPMQGT---------------------------------- 841 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 KL VQ + K +++ VHDE+V Sbjct: 842 ----------------AADLIKLAMIAVQG---------WLESEKLATKLIMQVHDELVL 876 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L LM +PL AE + Sbjct: 877 EVPDNELALVKEKLPQLMQDVAK--LDVPLLAEVGVGSNW 914 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 99/707 (14%), Positives = 191/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 D ET S + A + ++A + + Sbjct: 330 FAFDTETSSLDYMR----------AEVIGLSFAVEPGAAAYVPLAHDYPGAPPQLDRAMV 379 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D + + ++ + GI + R T + + + Sbjct: 380 LERLRPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIR-HDTMLESYVLNSTATRHDMD 437 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + + Y D + Sbjct: 438 SLAERYLDRKTLHYEDVAGKGAKQ---------------IPFARVSVEDACRYAAEDADV 482 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G +D+ + + + + Sbjct: 483 TLCLHRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMA 542 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +++ + + G + ++ L+ G+ T +S+L T Sbjct: 543 EVEAEARAVA-GETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDLAETFEL 601 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + S + L V+ GR+ + A TGR S QN+P Sbjct: 602 PRLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 658 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G KL+ AD + IE R++A ++ Sbjct: 659 ----------------------VRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLS 696 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA D++ T A+ F +++V+ QR K + Sbjct: 697 GDANLLAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAIN--------------FGL 742 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + A+ Sbjct: 743 IYGMS------------------------------AFGLAKQLGIQQKLAQGYIDLYFAR 772 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV E + + RRL D+ Sbjct: 773 YPGVRAYMDRTRESARELGY--------------------------VETLFGRRLHVPDI 806 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 + R +Q + DI+ M +++ Sbjct: 807 QSRNGQRRQYA---ERTAINAP------MQGTAADIIKRAMIALDAWIESSGAPLRMIMQ 857 Query: 628 VHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + T+ M++ A +PL + + Sbjct: 858 VHDELVFEVAEDFVSEATATVREHMSRAAELA--VPLMVDIGTGDNW 902 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 29 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 78 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 79 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 136 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 137 SLAERWLKHKTITFEEIAGKGKNPL---------------TFNQIALEEAGRYAAEDADV 181 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 182 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 241 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 242 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 300 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 301 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 357 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 358 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 395 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 396 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 441 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 442 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 471 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 472 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDI 505 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 506 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 556 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 557 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 200/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 354 FAFDTETDSLDNIT----------ANMVGLSFATEPGIAAYVPVAHDYLDAPEQLSRERV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ + V N ++R + + GI++ + T + + + Sbjct: 404 LELLKPILEDDNALKVGQNLKYDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ +AQ Sbjct: 507 TLQLHLKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLT 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + L+ LF GI + + T + +L + Sbjct: 567 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + A TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVA-ATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA + +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 767 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 797 YPGVLEYMERTRAQAKEKGY--------------------------VETLDGRRLYLPDI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 K + + +Q + DI+ M K +++ Sbjct: 831 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQ 881 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E SV + LM + +PL E + + Sbjct: 882 VHDELVFEVHKDDLDSVSKTIHELMENSMK--LDVPLLVEVGSGENW 926 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTRLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELERKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL SD+ Sbjct: 795 YPGVLEYMERTRAQAKEQGY--------------------------VETLDGRRLYLSDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K A + +Q + DI+ M +++ Sbjct: 829 KSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 924 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 107/698 (15%), Positives = 206/698 (29%), Gaps = 153/698 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D+ET S + +A I ++A + + Sbjct: 325 FAFDLETNSLDYM----------EAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQV 374 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D V N F+R + GI++ + + + ++ Sbjct: 375 LARLKPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIH-HDSMLESYVLDSTATRHNMD 432 Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L + +M GK + PY A+ + + Sbjct: 433 SLALKYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQE 492 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E+ R L++ L E L + + G ++D + + +A KKL+++ L Sbjct: 493 ESLRRLYQEL------EIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEAFDL 546 Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 G + ++ L+ + T +++L + +L Sbjct: 547 A-GESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPLPQRLLQYRT 605 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + L V+ GR+ + + TGR S QN+P Sbjct: 606 LSKLKSTYTDRLPLQVNPHTGRVHTSYHQAV-TATGRLSSSDPNLQNIP----------- 653 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G +LV AD + IE R++A ++ ++ + AF Sbjct: 654 -------------IRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAF 700 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 EDI+ T + F TP+++V+ EQR K + G+ Sbjct: 701 EAEEDIHQRTATEVFRTPLEEVTPEQRRSAKAINF--------------GLIYGMS---- 742 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + TA + + + ++ GV Sbjct: 743 --------------------------AHGLGRQLGINRTAAQHYIERYFQRYPGVKAYMD 776 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ + + RRL D+ + Sbjct: 777 NICQQARQKGY--------------------------VETLFGRRLYLPDIHSRQT---Q 807 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKN--GYDIVLTVHDEIVSET 636 +Q R +Q + DI+ M + KN +++ VHDE+V E Sbjct: 808 RRNQAERTAINAP------MQGSAADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFEV 861 Query: 637 PDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + ++ + MT +PL E + Sbjct: 862 AEDKLEITMRAIRENMTAAAQ--LKIPLIVEIGSGANW 897 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 198/706 (28%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM----- 53 + +D ET S + +A + +++ + + Sbjct: 312 VSLDTETTSLDQM----------EARLVGISFSVTEGEAAYLPLAHHYAGVPEQLDLAAT 361 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + L +L + + N ++R + GI + T + + L ++ + Sbjct: 362 LARLKPWLENPARKKLGQNLKYDRHVLANH-GIALAGVA-DDTLLASYVIESHLTHNMDD 419 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK + Y D + T Sbjct: 420 LARRHLGESTVSYEEICGKGAKQIG---------------FAEVDIAVASNYAAEDADIT 464 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L +G E + + + G ID + + + + +L+ Sbjct: 465 LRLNRALAGKLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLE 524 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAK 275 ++ + + L+ LF GI T +S+L + Sbjct: 525 QEAYQQAGQPF-NLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLP 583 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L + D GR+ A TGR S QN+P Sbjct: 584 KLILQYRGLAKLKSTYTDKLPSLIRPDTGRVHTNYAQAVA-ITGRLSSSDPNLQNIP--- 639 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR IA G ++V AD + IE R++A ++ Sbjct: 640 ---------------------VRTAEGRRVREAFIAPPGHRIVSADYSQIELRIMAHLSD 678 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA+GEDI+ TT A+ F ++V+ EQR K + L Sbjct: 679 DANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLI-------------- 724 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ + + A + + + Sbjct: 725 YGMSAFGLAAQLDIE------------------------------RNAAQQYIDRYFMRF 754 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + E RRL +++ Sbjct: 755 PGVADYMQRTREMAREQGYVETVF--------------------------GRRLYLPEIR 788 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628 + R +Q + D++ M + G +++ V Sbjct: 789 ASNPGRRSGA---ERAAINAP------MQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQV 839 Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E P+ V L +M +PL AE + + Sbjct: 840 HDELVLEVPEAELARVKERLPQIMAGVAE--LKVPLLAEVGAGESW 883 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 110/711 (15%), Positives = 194/711 (27%), Gaps = 175/711 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ QA + + + + Sbjct: 359 VAIDTETTSLDPM----------QAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQL 408 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 + + +L D + + N ++ +F GI + T + + Sbjct: 409 SREFVLERMRAWLEDASRPKLGQNLKYDIHVFANH-GIKLRGVA-HDTMLQSYVLASHRN 466 Query: 107 SSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + L + + GK EY Sbjct: 467 HGMDSLAERLLSLKTITYEEVCGKGASQIG---------------FDQIDLARATEYAAE 511 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L +R+ P + E + ++ Q + G ID + + + Sbjct: 512 DADVTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELG 571 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q L++ + + + LF + +V + T + +L Sbjct: 572 QRMLALEQSAYEAAGQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLAE 630 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ S + L + V+ GR+ + A TGR + QN Sbjct: 631 DYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATA-VTGRLASTEPNLQN 689 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R IA G +V AD + IE R++ Sbjct: 690 IP------------------------VRTDEGRRIREAFIAEPGSVIVSADYSQIELRIM 725 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A I+G++ ++AFANGEDI+ T A+ F D VS EQ Sbjct: 726 AHISGDENLLRAFANGEDIHRATAAEIFGVERDAVSSEQ--------------------- 764 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + L A + A Sbjct: 765 -----------------------RRYAKVINFGLIYGMSAFGLASNLGIERDAARHYIDR 801 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + ++ GV ++ + RRL Sbjct: 802 YFMRYPGVAHYMEETRQTAREQGYVETVF--------------------------GRRLW 835 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYD 623 D+ G A R +Q + D++ M Sbjct: 836 LPDINGGSGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQDWLERDGLQTR 886 Query: 624 IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE+V E P+ V L LM +PL AE + Sbjct: 887 QIMQVHDELVLEVPEHELELVKARLPELMCTVAE--LRVPLVAEVGSGANW 935 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 109/707 (15%), Positives = 208/707 (29%), Gaps = 170/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 355 FAFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+T++ + N F+R + + GI++ + T + + + Sbjct: 405 LTALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSSRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + + Y D + Sbjct: 463 TLAEKHLNHKTTTFEEIAGKGKGQL---------------TFNQIEVEQATLYAAEDADI 507 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + +G ID ++ + I Q Sbjct: 508 TLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLA 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +++++ L + L+ LF + + + T + +L + Sbjct: 568 EIEKETFALAGQEF-NLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHEL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L V+S + T + TGR S QN+P Sbjct: 627 PRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP--- 683 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G K+V AD + IE R++A ++ Sbjct: 684 ---------------------VRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQ 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA G+DI+ T ++ F P+D+V+ EQR K + Sbjct: 723 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFG--------------LI 768 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ SQ + + + + ++ Sbjct: 769 YGMSAFGLSQQI------------------------------GVERKEAQRYMDLYFERY 798 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL + + + + RRL ++ Sbjct: 799 PGVLDYMERTRKQASQQGY--------------------------VETLDGRRLYLPEIN 832 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627 + A+ RE +Q + DI+ + M + +++ Sbjct: 833 SKNAIRRKAS---EREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 883 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + LM + A +PLK E + Sbjct: 884 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 928 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 193/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + +A I ++A + + Sbjct: 341 FAFDTETTSLDYM----------EARIVGVSFAVEAGKAAYVPFGHDYLGAPVQLTEAVV 390 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D T + V N ++R + ID+ + T + + + Sbjct: 391 LGKLKPLLEDPTRLKVGQNLKYDRNVLLNH-DIDLQGIAY-DTMLESYVLNSTASRHDMD 448 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + Y D + Sbjct: 449 SLAKRYLGVETTSFEDIAGKGVKQL---------------TFNQIELEQAAPYAAEDADI 493 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + + G ID L+ + + I Sbjct: 494 TLRLHQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLA 553 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ +L + L LF G+ + + T + +L+ T Sbjct: 554 ELERQAHELAGQEF-NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYEL 612 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ + + L + GR+ + A TGR S QN+P Sbjct: 613 PRLLMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 669 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I S G KLV AD + IE R++A ++ Sbjct: 670 ----------------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLS 707 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA G+DI+ T A+ F +D V+ + R K + Sbjct: 708 GDKGLLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAIN--------------FGL 753 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 754 IYGMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFER 783 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 784 YPGVLEYMERTRQQAEAQGY--------------------------VETLFGRRLYLPDI 817 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626 K + L R +Q + DI+ M N +++ Sbjct: 818 KSRNAGLR---KGAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDESIRMLM 868 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + M+ +PL E + Sbjct: 869 QVHDELVFEIREEKLEEYTAIIKEKMSAAAE--LHVPLLVEAGTGDNW 914 >gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 206/705 (29%), Gaps = 169/705 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 ID ET S + QA + ++A ++ + Sbjct: 351 FAIDTETNSLNYM----------QAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSWKTV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + L L D + V N ++ + + G+++ T + + T ++ + Sbjct: 401 LAALKTVLEDPNIKKVGQNLKYDLTILARH-GVELQGV-VYDTMLESYTLDSTGRHNMDD 458 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ + GK EY D + T Sbjct: 459 LAKRFLHHDTIHFEDLAGKGKGQL---------------TFDQIEIDKAAEYAAEDADVT 503 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P + E L + + G ID DL+ + + I + Sbjct: 504 FKLHQVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQ 563 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L++ +L + T L+ LF G+ + T + +L Sbjct: 564 LEQQAHQLAGQAF-NLASTKQLQEILFGKLGLPVLKKTPKGAPSTNEEVLEELAYEHELP 622 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L++ S + L + + + GR+ + + TGR S QN+P Sbjct: 623 KLLVEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAV-TITGRLSSSDPNLQNIP--- 678 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G K+V AD + IE R++A ++ Sbjct: 679 ---------------------TRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSA 717 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + AF++G D++ +T A+ F+ P+++V+ +QR K + Sbjct: 718 DAGLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAIN--------------FGLI 763 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + ++ + + ++ Sbjct: 764 YGMS------------------------------AFGLARQLQIPRNEAQTYIDRYFHRY 793 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV Q D+ E + RRL ++K Sbjct: 794 PGVKQFMNDIQEKAKQQGYVETLL--------------------------GRRLYLPELK 827 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVH 629 R +Q + DI+ + M + KN +++ VH Sbjct: 828 SSNGMRR---KAAERVAINAP------MQGTAADIIKKAMIDIDRFIADKNDIRMIMQVH 878 Query: 630 DEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + Sbjct: 879 DELVFEVKEDKVEYYEKIIKDMMENAVK--LSVPLIVEVNFGDNW 921 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESIAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELAYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ E + RRL D Sbjct: 797 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D+ET S L A I ++A + +++ Sbjct: 351 FAFDLETDSLDTL----------SANIVGISFAIEPGKAAYLPVAHDYLDAPAQLDRNSV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLK 110 L L D ++ V N ++R + K I++ ++ T + + G + Sbjct: 401 LERLKPLLEDPALLKVGQNLKYDRGVLKNY-DIELQGIKF-DTMLESYALSSVGSRHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + + Y D + Sbjct: 459 TLSSRWLNHKTVSFEEIAGKGKKQL---------------TFNQIDLEQAAHYAAEDADV 503 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + Sbjct: 504 TLQLHLKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLA 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + L+ LF GI + T + +L+ + Sbjct: 564 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILENRGLAKLKSTYTDKLPLMINPITGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IAS G K+V AD + IE R++A ++ Sbjct: 680 ----------------------VRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G DI+ T A+ F +DKV+ EQR K + Sbjct: 718 QDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + A + RRL D+ Sbjct: 794 YPGVLEYMESTRQQAAEKGY--------------------------VSTLDGRRLYLPDI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 828 NASNAMRR---KAAERAAINAP------MQGTAADIIKKAMIAVDGWLTPQSAPDVKMIM 878 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + LM + +PL+ + + Sbjct: 879 QVHDELVFEVKTSEVEAATAKIRDLMENSMK--LDVPLQVDVGVGDNW 924 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 197/698 (28%), Gaps = 154/698 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET S PL A + +A + + + Sbjct: 318 ISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDEV 367 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLK 110 + + L D T+ V N ++ ++ ++ GI + T + + L Sbjct: 368 VAQVQPLLEDATLAKVGQNLKYDALVLRRA-GIALRGV-VADTMLQSYLLYPAARSHGLD 425 Query: 111 NACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + G K I + Y A+ Y + D Sbjct: 426 ALAADHLGYKMISYSEVAGTGKKQIGFDEVALDVATRYAAEDAD-----ITLQLYQRFDA 480 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E L + + E L + + G R+D + + L + K+L++ I +L Sbjct: 481 ELDGTLRELFETV---EMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQQIYEL 537 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ T +L + LIL + Sbjct: 538 AGEEF-NINSPKQLGVILFEKLDLPHGKKTKTGWSTAVDVLKNLADKHDVVALILQYRSL 596 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + D GR+ + + TGR S QN+P Sbjct: 597 AKLKGTYTDALPLLIHPDSGRIHTSFNQAV-TATGRLSSSDPNLQNIP------------ 643 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G+ L+ AD + IE RV+A +A E ++F Sbjct: 644 ------------IRSEEGRAIREAFVPDAGQVLLAADYSQIELRVMAHMADEPILQESFR 691 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 GEDI+ T ++ F+ D V E R K + G+ Sbjct: 692 QGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINF--------------GVLYGMG----- 732 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + + + ++ VL+ + Sbjct: 733 -------------------------AFSLAKDLGISNKEAKQYIDHYFERYPAVLEFIEQ 767 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + +++ RR SD+ + + Sbjct: 768 QKQFGRE--------------------------HLYVETLLGRRCAVSDINSKNGQVRSY 801 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 + VQ + DI+ M + +VL VHDE+V + P Sbjct: 802 AERN---------AVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVFDVP 852 Query: 638 DTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 V + M + +PL+ +R Sbjct: 853 KDEVDDVVALVVQEMEQAVE--LRVPLEVSLGRGANWR 888 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 198/698 (28%), Gaps = 158/698 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56 D ET S + +A + ++A + + + Sbjct: 356 DTETTSLNYM----------EAKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAK 405 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113 L L D +++ V N ++ + +GI + + T + + ++ + Sbjct: 406 LKPLLEDPSLLKVGQNLKYDMSILAN-VGIALKGVAF-DTMLESYVFNSVASKHNMDDLA 463 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + GK + + + Y D + T Sbjct: 464 LKYLGHKNISFEEIAGKGVKQL---------------TFNQIPLETAAPYAAEDADITLR 508 Query: 173 LFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P E L + I +G ID L+ + + +A++ +L+ Sbjct: 509 LHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELE 568 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 + ++ + T L+ F G + T + +L + + Sbjct: 569 QKAYEIAGEPF-NLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELALDYPLPKI 627 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S + L V GR+ + A TGR S QN+P Sbjct: 628 ILEHRSLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIA-ATGRLSSSEPNLQNIP----- 681 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A G+K++ AD + IE R++A ++ + Sbjct: 682 -------------------IRTEEGRRIRHAFVAPEGRKILAADYSQIELRIMAHLSQDK 722 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AFA G+DI+ T A+ F+ +V+ EQR K + L Y Sbjct: 723 GLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMS-----AFGLARQ 777 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 LD+ + F+ + + + E L G L Sbjct: 778 LDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYL---------PA 828 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + I P Sbjct: 829 IKDRNAMRRQAAERAA---------------------------INAPM------------ 849 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 TA + + + E Q +++ VHDE+V E Sbjct: 850 ---QGTAADIIKKAMINIAQWIETETQG----------------EITMIMQVHDELVFEV 890 Query: 637 PDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 S+ +C LM + S + L AE + Sbjct: 891 DADKADSLKLKVCELMAQAAS--LDVELLAEAGIGDNW 926 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 206/708 (29%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 D ET S + +A + ++A + Sbjct: 343 YFAFDTETTSLNYM----------EARVVGVSFAVEAGSAAYVPFGHDYVGVEQQLSEDW 392 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + + L L D + V N ++R + GI++ ++ T + + + Sbjct: 393 VLAQLKPLLEDSSRAKVGQNLKYDRNVLANH-GIELNGIQF-DTMLESYVLNSTATRHDM 450 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + Q G Y D + Sbjct: 451 DSLARKYLDVGTIKFEDIAGKGAKQL---------------TFNQIQLQQAGPYAAEDAD 495 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L P E L + I G + DL+ K + Sbjct: 496 ITLQLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRL 555 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 ++L+++ +L G + L LF + + T + +L+ + Sbjct: 556 QQLEKEAHELA-GEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTAEEVLAELALDYP 614 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + +S GR+ + + TGR S QN+P Sbjct: 615 LPRILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAV-TATGRLSSSDPNLQNIP- 672 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 VR +A +G K+V AD + IE R++A + Sbjct: 673 -----------------------IRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHL 709 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ +KAFA G+DI+ T A+ F +++VS EQR K + Sbjct: 710 SQDNGLLKAFAEGKDIHQATAAEVFGLELEQVSTEQRRRAKAINF--------------G 755 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 756 LIYGMS------------------------------AFGLAKQIDVGRHEAQEYIDTYFS 785 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + A + RRL + Sbjct: 786 RYPGVRDYMDNTRADAAERGY--------------------------VETLYGRRLYLPE 819 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + A R +Q + DI+ + M + + +++ Sbjct: 820 INASNGMRRQAA---ERTAINAP------MQGTAADIIKKAMVDVDRWLLESDVDGQMIM 870 Query: 627 TVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V ++ LM+ +PL + + Sbjct: 871 QVHDELVFEVAEPSLDYLVSSVNDLMSGAV--VLDVPLIVDVGIGSNW 916 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 206/707 (29%), Gaps = 170/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + + + Sbjct: 372 FAFDTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDV 421 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLK 110 + L L D+ ++ + N F+R + + GI++ + T + + + Sbjct: 422 LAALKPILEDKNILKIGQNLKFDRGIMEN-EGIELNGIHF-DTMLESYVLNSVSNRHDMD 479 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + + Y D + Sbjct: 480 TLAEKHLNHKTTTFEEIAGKGKGQL---------------TFNQIEVEQATLYAAEDADI 524 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + +G ID ++ + I Q Sbjct: 525 TLLLHQALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLA 584 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +++++ L + L+ LF + + T + +L + Sbjct: 585 EIEKETFALAGQEF-NLSSPKQLQEILFDKLQLPVIKKTPKGAPSTNEEVLEELAHSHEL 643 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L V+S + T + TGR S QN+P Sbjct: 644 PRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP--- 700 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G K+V AD + IE R++A ++ Sbjct: 701 ---------------------VRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQ 739 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA G+DI+ T ++ F P+++V+ EQR K + Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFG--------------LI 785 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ SQ + + + + ++ Sbjct: 786 YGMSAFGLSQQI------------------------------GVERREAQRYMDLYFERY 815 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL + + + RRL ++ Sbjct: 816 PGVLDYMERTRKQASEQGYVETLE--------------------------GRRLYLPEIN 849 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627 + A+ RE +Q + DI+ + M +++ Sbjct: 850 SKNAIRRKAS---EREAINAP------MQGTAADIIKKAMIAVDNWICNECPADVHMIMQ 900 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM + A +PLK E + Sbjct: 901 VHDELVFEVRESYLENANIMIHKLMESSMELA--IPLKVEVGVGNNW 945 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 203/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ E + RRL D Sbjct: 797 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMESAAELV--VPLIVEVGVGQNW 926 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 193/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A + ++A + Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V V N ++ + GI + T + + + Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSVASRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + ++ Y D + Sbjct: 453 GLALKYLGHKNIGFEDIAGKGAKQL---------------TFNQIPLEVAAPYAAEDADI 497 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 TLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKID 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 L+E ++ + L++ F G + + T + +L + Sbjct: 558 TLEEKAYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPL 616 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 617 PKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMS-----AFGL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F + + + E L G L Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYL-------- 818 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G ++ Sbjct: 819 -PEIRDRNAMRRQGAERAAINAPMQGTAADIIKKAMI----------------------- 854 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +Q ++ T G M + VHDE+V Sbjct: 855 ---------NIAQWIKTETQGE----------------IAMI----------MQVHDELV 879 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + L AE + Sbjct: 880 FEVDADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 193/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A + ++A + Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V V N ++ + GI + T + + + Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSVASRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + ++ Y D + Sbjct: 453 GLALKYLGHKNIGFEDIAGKGAKQL---------------TFNQIPLEVAAPYAAEDADI 497 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 TLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKID 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 L+E ++ + L++ F G + + T + +L + Sbjct: 558 TLEEKAYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPL 616 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 617 PKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMS-----AFGL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F + + + E L G L Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYL-------- 818 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G ++ Sbjct: 819 -PEIRDRNAMRRQGAERAAINAPMQGTAADIIKKAMI----------------------- 854 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +Q ++ T G M + VHDE+V Sbjct: 855 ---------NIAQWIKTETQGE----------------IAMI----------MQVHDELV 879 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + L AE + Sbjct: 880 FEVDADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 928 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 98/706 (13%), Positives = 195/706 (27%), Gaps = 169/706 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + D ET S + A I + A+D + Sbjct: 346 KRFAFDTETTSLD-------YRIA---QIVGFSVAFDAQNAYYVPLAHDYEGAPEQLNRE 395 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + + + L DE+V + H+ ++ + + GI + + T + + Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLAGW-YFDTMLASYVLNSVATRHG 453 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L+ + GK + + + Y D Sbjct: 454 MDDVARLYLSHLTTTYEQVAGKGAKQ---------------KTFNQIPLETAAHYAAEDA 498 Query: 168 EATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQE 216 T L++ L +L + + + G +DL + +L + Sbjct: 499 HVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNT 558 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 + L+ I+++ G + + LF G+ + T +S+L Sbjct: 559 MQNLENQIMEIA-GESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKIEHP- 616 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL S + L + + D T + TGR S QN+P Sbjct: 617 -IAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIP- 674 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+ L+ AD + IE R++A + Sbjct: 675 -----------------------IRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHL 711 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ + AF +G+D++ T A+ ++ V+ +QR K + Sbjct: 712 SQDEALLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FG 757 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + K + Sbjct: 758 LLYGMSEF------------------------------GLIRQLGFTRQESQDYIKQYFH 787 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ G+ + + + RRL D Sbjct: 788 RYPGIYDYMQRTRQVALEQG--------------------------FVETLLGRRLYTPD 821 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628 + + R Q + DI+ M K ++L V Sbjct: 822 IDARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQV 872 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E + + L +M +PL E + K + Sbjct: 873 HDELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 105/710 (14%), Positives = 204/710 (28%), Gaps = 174/710 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + +A + +++ + + Sbjct: 345 IAFDTETTSLNYM----------EAQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWL 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLK 110 L L D ++ V N ++ + ++ GI + + T + + G + Sbjct: 395 LKVLKPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIK-NDTMLASYVFNSVGSRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + Y D + Sbjct: 453 TLSLQYLNHKPIKFEEIAGKGAKQL---------------TFNQIELAQAAPYAAEDADI 497 Query: 170 TRELFKRLIPL------------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L +D E L + + + G ++D +++ K E IA + Sbjct: 498 TLRLHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKL 557 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 +L++ ++ + L+ LF + + T + +L Sbjct: 558 DELEQKAFEIAGEEF-NLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEEVLQELAHDYP 616 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 D+IL + + + L ++ D GR+ + Q A TGR S QN+P Sbjct: 617 LPDVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVA-ATGRLSSTEPNLQNIP- 674 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 VR +A G +V D + IE R++A + Sbjct: 675 -----------------------IRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHL 711 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++AFA G+DI+ T ++ F +++V+ EQR K + Sbjct: 712 SQDASLLRAFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNF--------------G 757 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 758 LIYGMS------------------------------AFGLSRQLDIPRHEAQAYMDKYFE 787 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GVL+ ++ E + RRL + Sbjct: 788 RFPGVLEYMENTRETAKKQGY--------------------------VSTLFGRRLPLPE 821 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY----DI 624 +K A + +Q + DI+ M + G + Sbjct: 822 IKASNGARRKAAERAA---------INAPMQGTAADIIKRAMIKVGDWIDEKGCQSDVRM 872 Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE+V E S L +M + +PL AE + Sbjct: 873 LMQVHDELVFEIRTEHAESYAKALADVMGEAAD--LDVPLLAEYGFGANW 920 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A + ++A + Sbjct: 345 IAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V V N ++ + GI + T + + + Sbjct: 395 LEKLRPILEDDKVKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSVASRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + ++ Y D + Sbjct: 453 GLAIKYLGHKNIGFEDIAGKGAKQL---------------TFNQIPLEVAAPYAAEDADI 497 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 TLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKID 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 L+E ++ + L++ F G + + T + +L + Sbjct: 558 TLEEKAYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPL 616 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 617 PKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMS-----AFGL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F + + + E L G L + R Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNA 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + +G + + A + Sbjct: 827 MRR-----QGAERAAINAPMQGTAADIIKKAMIN-------------------------- 855 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +Q ++ T G M + VHDE+V Sbjct: 856 ----------IAQWIKTETQGE----------------IAMI----------MQVHDELV 879 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + L AE + Sbjct: 880 FEVDADKAETLKQKVCELMAKAA--ILDVALLAEAGIGDNW 918 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 98/708 (13%), Positives = 184/708 (25%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + D ET S + A + A A D Sbjct: 379 EFAFDTETTSLNYM----------NAELVGFAVAVSD-KAAYIPFGHNYPGAPDQIDKQL 427 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + L D+++ + N ++ + + GI + + T + + + Sbjct: 428 VIDKFKPLLEDDSLKKIGQNLKYDMSVLAEDAGITLRGVAF-DTMLESYVLDSVATRHDM 486 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L GK + Y D + Sbjct: 487 DSLALKYLGRKTISFTDIAGKGAKQL---------------TFNQIGLHEASPYAAEDAD 531 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P + E L + I G +D L+ + +A+ Sbjct: 532 VTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRM 591 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 +L E + + L L+ I + T +++L Sbjct: 592 AELQEKAFDIAGQEF-NLASPKQLGEILYEKLEIPVIKKTPKGAPSTAEAVLQELAHDYP 650 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +I++ + + L E ++ GR+ + + TGR S QN+P Sbjct: 651 LPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 708 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A GKK+V D + IE R++A + Sbjct: 709 -----------------------VRSEEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHL 745 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ AF G DI+ T A+ + +D+VS R K + Sbjct: 746 SGDKGLTDAFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------G 791 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + L + + Sbjct: 792 LIYGMS------------------------------AFGLAKQLGLPRKEAQEYIDLYFE 821 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + +D RRL + Sbjct: 822 RYPGVKKYMEDTRALAIDKGYVETVY--------------------------GRRLYLPE 855 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 856 IHSKN---GQRRQGAERAAINAP------MQGTAADIIKKAMIKVHDWLETTHFDAKMIM 906 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E D V + + M +PL + + + Sbjct: 907 QVHDELVFEVADDQVDDLVKEVKARMESAAE--LKVPLIVDAGAGENW 952 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 200/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFATAPGVAAYVPVAHDYLDAPDQIPRDRV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L D+ + V N F+R + + GI++ + T + + + Sbjct: 404 LELMKPVLEDDKALKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ +AQ Sbjct: 507 TLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLT 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + L+ LF GI + + T + +L + Sbjct: 567 ELEQKAHELAGEPF-NLSSPKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + A TGR S QN+P Sbjct: 626 PKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVA-ATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA + +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 721 RDKGLLTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 767 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 797 YPGVLEYMERTRAQAKEKGY--------------------------VETLDGRRLYLPDI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 K + + +Q + DI+ M K +++ Sbjct: 831 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM + + +PL E + + Sbjct: 882 VHDELVFEVHKDDLEAVSRKIHELMENSMT--LDVPLLVEVGSGENW 926 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 98/706 (13%), Positives = 199/706 (28%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 D ET S + A + + + + + Sbjct: 350 FAFDTETTSLNYMA----------AELVGFSVSVEAGKAAYIPVAHDYEGAPEQLDRDWV 399 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L D + + V + ++ + I++ + T + + + Sbjct: 400 LEQIKPVLEDASQLKVGQHLKYDANVLANY-DIELKGIEF-DTMLESYIFNSTANRHDMD 457 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + + + Y D + Sbjct: 458 SLAKKFLSHKSVSFEEIAGKGAKQ---------------KTFNQIELEQAAFYAAEDADI 502 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + + + E L + + G ID DL+ + IA + Sbjct: 503 TFRLHQAIWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQSSEIATRLE 562 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ ++ + L+ LF+ + + T + IL + Sbjct: 563 ELEIKAHEMAGQAF-NLSSPKQLQEILFVKLELPILKKTPKGQPSTAEPILQELALDYEL 621 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +I+ + S + L E + GR+ + + TGR S QN+P Sbjct: 622 PRIIMEHRSLSKLKSTYTDKLPEMIQKTGRIHTSYHQAV-TATGRLSSTDPNLQNIP--- 677 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G KL+ AD + IE R+++ ++ Sbjct: 678 ---------------------IRTAEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQ 716 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + ++AFAN +D++ T A+ F +D+V+ EQR K + Sbjct: 717 DPGLLEAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAINF--------------GLI 762 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + + ++ Sbjct: 763 YGMS------------------------------AFGLAKQLGIGRPEAQKYIQRYFERY 792 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV ++ E + RRL D+K Sbjct: 793 PGVRTYMENTREMAREKGY--------------------------VETLFGRRLYLPDIK 826 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628 + + A R +Q + DI+ M ++L V Sbjct: 827 ASNAMMRQAA---ERTAINAP------MQGTAADIIKRAMIEMHAWLKDTDLDIKMILQV 877 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE++ E ++ + + +M A +PL E + Sbjct: 878 HDELIFEVKESDLSAAQEKILDIMENTS--AIDVPLLVEAGIGDTW 921 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 199/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLL 58 + ID ET S + +A + ++A + + + L+ Sbjct: 339 IAIDTETTSLNYM----------EAELVGISFAVEAGKAAYLPLSHDYVDAPEQLDKALV 388 Query: 59 -----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L +E + V N ++ +F GI + ++ T + + ++ Sbjct: 389 FEKLTPLLENEAIKKVGQNLKYDISIFANA-GIKLKGVQF-DTMLESYVFNSVASKHNMD 446 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 447 DLALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADI 491 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + TI +G ID L+ + E +A++ Sbjct: 492 TLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKID 551 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 L ++ + L+ F G + + T + +L + Sbjct: 552 DLQTKAHEIAGQPF-NLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 610 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 611 PKIILEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 667 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A ++ Sbjct: 668 ----------------------IRTEEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLS 705 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F+ +V+ +QR K + L Y Sbjct: 706 QDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMS-----AFGL 760 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + ++ + + L G L Sbjct: 761 AKQLDIPRAEAQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYL-------- 812 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 813 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINV--------------------- 850 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 ++ + T G +++ VHDE+V Sbjct: 851 -----------AKWIETETNGE--------------------------ITMIMQVHDELV 873 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E S+ +C LM + + L AE + Sbjct: 874 FEVDADKADSLQVKICELMAAAAT--LDVELLAEAGIGDNW 912 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 203/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 409 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 467 DDLAKRYLGHETIAFESIAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 511 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID + + IA Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRL 571 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L+E L + T L+ LF G+ + T + +L + + Sbjct: 572 TALEEQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+++ EQR K + Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINF--------------G 771 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRADAQKYMDLYFQ 801 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ E + RRL D Sbjct: 802 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 835 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPDIEMIMQ 886 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 99/702 (14%), Positives = 198/702 (28%), Gaps = 159/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S ++A + ++A + + Sbjct: 352 FAFDTETDSLD----------TQEARLVGMSFAIEPGHAAYLPLGHDYLDAPVQLPLEEV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108 + L E ++ + N ++ + + I++ + T + + Sbjct: 402 LELMKPILESENILKIGQNLKYDAEVLENY-DIELKGIGY-DTMLESYVLNSVAGMGRHD 459 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN + GK + A + Y D Sbjct: 460 MDSLADRHLNHKTVSFEEIAGKGKKQL---------------TFNQIALEEAANYAAEDA 504 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + L P + E L + + +G ID +++ ++I Sbjct: 505 DVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKGVLIDANVLAAQSKVITAR 564 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272 +L+++ +L + L+ LF + + T + +L + Sbjct: 565 LAELEKEAFELAGEEF-NLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNH 623 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L+L + + + L ++ + T + TGR S QN+P Sbjct: 624 ALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIP- 682 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G K++ AD + IE R++A + Sbjct: 683 -----------------------VRTEEGRRIRQAFIAREGYKVMAADYSQIELRIMAHL 719 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + AFA G+DI+ T A+ F P+++V+ +QR K + L Y Sbjct: 720 SQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIYGMS-----AFG 774 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + FE + + + Q E + L G L Sbjct: 775 LARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLA------ 828 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + A++ + M + P Sbjct: 829 ---DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDNWLQTEKPH-------- 875 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 D+L + VHDE+ Sbjct: 876 ----------------------------------ADML---------------MQVHDEL 886 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E ++ V + SLM ++ +PLK + + Sbjct: 887 VFEVKESELERVQAQVQSLMEQSMK--LDVPLKVDVGIGDNW 926 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 198/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQS 51 + +D ET + A + ++A ++ E++ Sbjct: 357 KLIAVDTETDGLDYM----------SANLVGVSFALENGEAAYLPLHLDYLGAPKTLEKN 406 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 S L L + + + N F+ +F + GID+ + T +L+ T ++ Sbjct: 407 TALSALKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNM 464 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + GEY D + Sbjct: 465 DDLAKRYLGHQTISFEDIAGKGKNQL---------------TFNQIPLEQAGEYAAEDAD 509 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + I + Sbjct: 510 VTMKLQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERL 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L+ L + T L+ LF G+ T + +L + Sbjct: 570 TALEMQAHTLAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGVPSTNEEVLEELAYSHE 628 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+ GR+ + + TGR S QN+P Sbjct: 629 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 A +R IA +G K++ AD + IE R++A + Sbjct: 687 -----------------------IRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHL 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y + Sbjct: 724 SNDQGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYG-----MSSFG 778 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + + Sbjct: 779 LS---------------------------------------RQLGISRADAQRYMDLYFQ 799 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V D+ E + RRL + Sbjct: 800 RYPNVQTFIHDIREKAKAQGY--------------------------VETLFGRRLYLPE 833 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLT 627 + + R +Q + D + M +++ Sbjct: 834 INSSNAMRR---KGAERVAINAP------MQGTAADTIKRAMIKLDGITRDDPDIHMIMQ 884 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL + + + Sbjct: 885 VHDELVFEVRSEKIAFFSDLIKQHMEAAAELV--VPLIVDVGVGENW 929 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 207/707 (29%), Gaps = 170/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 372 FAFDTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEV 421 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+T++ + N F+R + + GI++ + T + + + Sbjct: 422 LTALKPILEDKTILKIGQNLKFDRGIMEN-EGIELNGI-YFDTMLESYVLNSVSSRHDMD 479 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + + Y D + Sbjct: 480 TLAEKHLNHKTTTFEEIAGKGKGQL---------------TFNQIEVEQATLYAAEDADI 524 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + +G ID ++ + I Q Sbjct: 525 TLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLA 584 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +++++ L + L+ LF + + + T + +L + Sbjct: 585 EIEKETFALAGQEF-NLSSPKQLQEILFEKLNLPIIKKTPKGAPSTNEEVLEALAHSHEL 643 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L V+S + T + TGR S QN+P Sbjct: 644 PRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP--- 700 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R I +G K+V AD + IE R++A ++ Sbjct: 701 ---------------------VRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQ 739 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA G+DI+ T ++ F P+D+V+ EQR K + Sbjct: 740 DKGLLDAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFG--------------LI 785 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ SQ + + + + ++ Sbjct: 786 YGMSAFGLSQQI------------------------------GVERKEAQRYMDLYFERY 815 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL + + + + RRL ++ Sbjct: 816 PGVLDYMERTRKQASQQGY--------------------------VETLDGRRLYLPEIN 849 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627 + A+ RE +Q + DI+ + M + +++ Sbjct: 850 SKNAIRRKAS---EREAINAP------MQGTAADIIKKAMIAVDNWICHECPDDVHMIMQ 900 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + LM + A +PLK E + Sbjct: 901 VHDELVFEVRESYLEKANAMIHKLMESSMELA--IPLKVEVGVGNNW 945 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 167 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 216 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 217 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 274 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 275 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 319 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 320 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 379 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 380 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 438 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 439 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 496 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 497 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 533 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 534 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 579 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 580 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 609 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 610 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 643 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 644 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 694 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E K + Sbjct: 695 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 739 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 108/709 (15%), Positives = 196/709 (27%), Gaps = 170/709 (23%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------Q 50 M + D ET S I +++ +D + Sbjct: 362 MDWVAFDTETDSLDLFA----------GRIVGVSFSIEDNRAAYVPLAHNYPGAPAQLDR 411 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107 + +DL +L D + V N+ F+ + GI + T + + Sbjct: 412 DTVLADLKPWLEDASRTKVMQNAKFDSHMLANH-GITLRGV-LFDTMLESYVLDSTATRH 469 Query: 108 SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + + L S + GK + + G Y D Sbjct: 470 DMDSLAAKYLGRSTITFEDIAGKGAK---------------ALSFPEIHLEQAGPYAAED 514 Query: 167 VEATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 + T +L + L P E+ L + + G R+D + + I + Sbjct: 515 ADVTGQLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIGE 574 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNIT 271 +++ K + T L+ LF G T + L + Sbjct: 575 RIAAVEQAAFKEAGREF-NLGSTKQLKELLFDELKLPVGKKTPKGEPSTDEEALGELVGS 633 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 LIL+ S ++ L E + GR+ + TGR S QN+ Sbjct: 634 HPLPALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAV-TATGRLSSSNPNLQNI 692 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A G KL+ AD + IE R++A Sbjct: 693 P------------------------IRSEEGRRIRQAFVADPGCKLISADYSQIELRIMA 728 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ ++ AFA GEDI+ T A+ F +VS QR K + Sbjct: 729 HLSEDERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINF------------- 775 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + + + + Sbjct: 776 -GLIYGMS------------------------------AFGLAKQLDVPRGEAQAYIDLY 804 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ GV + + + + + RRL Sbjct: 805 FARYPGVAKYMERMRQQARQMGYVETVF--------------------------GRRLYL 838 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIV 625 ++ R +Q + DI+ M K ++ Sbjct: 839 PEIHSRNGQRRQYA---ERTAINAP------MQGTAADIIKIAMIALHKLLVVPGRARMI 889 Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P++ + + MT +PL+ + + Sbjct: 890 LQVHDELIFEVPESDVAEIEPIIRAQMTGAAK--LNVPLEVGIGIGRSW 936 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 194/703 (27%), Gaps = 171/703 (24%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSDL 57 ET S + A + ++A + L Sbjct: 33 TETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELL 82 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL 114 L DE + V N ++R + GI++ + T + + + + Sbjct: 83 KPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAE 140 Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + GK + A + G Y D + T +L Sbjct: 141 RWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQL 185 Query: 174 FKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 ++ P E L + I G +ID ++ E + +L++ Sbjct: 186 HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEK 245 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278 ++ + T L+ LF GI + + T + +L + +I Sbjct: 246 KAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVI 304 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + + L ++ GR+ + + TGR S QN+P Sbjct: 305 LEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP------ 357 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +V AD + IE R++A ++ + Sbjct: 358 ------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKG 399 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AFA G+DI+ T A+ F P++ V+ EQR K + G+ Sbjct: 400 LLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGM 445 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A + + + + ++ GV Sbjct: 446 S------------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGV 475 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 L+ + + RRL D+K Sbjct: 476 LEYMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIKSSN 509 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631 A + +Q + DI+ M +++ VHDE Sbjct: 510 GARRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDE 560 Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E +V + LM +PL E + + Sbjct: 561 LVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 195/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + +A + ++A + + Sbjct: 340 FAFDTETTSLDYM----------EARVVGVSFAIEPGKAAYVPFGHDYLGAPVQLTEAVV 389 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D + V N ++R + GI++ + T + + + Sbjct: 390 LGKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIELQGIAY-DTMLESYVLNSTASRHDMD 447 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + + + Y D + Sbjct: 448 SLARRYLNAETISFEEIAGKGVKQL---------------TFNQIELEQAAPYAAEDADI 492 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + + G I+ L+ + + I Sbjct: 493 TLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERLGTTIEPKLLHQQSQEIEVRLA 552 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L++ +L + L LF G+ + + T + +L+ T Sbjct: 553 ELEKQAHELAGQEF-NLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAELAETYEL 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ + + L + GR+ + A TGR S QN+P Sbjct: 612 PQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVA-ATGRLSSTDPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I G KLV AD + IE R++A ++ Sbjct: 669 ----------------------VRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHLS 706 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA G+DI+ T A+ F ++ V+ + R K + Sbjct: 707 GDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAIN--------------FGL 752 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 753 IYGMS------------------------------AFGLAKQLGIGRAEAQKYMDLYFER 782 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 783 YPGVLEYMERTRQQADAQGY--------------------------VETLFGRRLYLPDI 816 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626 K + L R +Q + DI+ M N +++ Sbjct: 817 KSRNAGLR---KAAERAAINAP------MQGTAADIIKRAMINVDGWIRGIEDQSIRMLM 867 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + M+ +PL E + Sbjct: 868 QVHDELVFEIREEKLEEYIAIIKEKMSAAAE--LDVPLVVEAGTGDNW 913 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 198/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGVSFATEEGVAAYVPVAHDYLDAPEQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELEQASPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ + E L + I G ID + + IA Sbjct: 507 TLRLHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLD 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 567 ELEQQAFEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ I++VS EQR K + Sbjct: 721 GDKALLDAFQQGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVN--------------FGL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQQYMDTYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 797 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 K R +Q + DI+ + M + +++ Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIESQGQGRVKLLM 881 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 882 QVHDELVFEVQESALAEIESKVQELMESAAQ--LDVPLIAEAGHGDNW 927 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRLDAQKYMDLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 99/702 (14%), Positives = 205/702 (29%), Gaps = 154/702 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA I ++A + + Sbjct: 199 FAFDTETTSLDYM----------QAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQLSLECV 248 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L + V N +++ + ID+ + T + + + Sbjct: 249 LAALKPLLENPNKHKVGQNLKYDKHVLLNH-DIDLQGIAY-DTMLESYVCNSVATRHDMD 306 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ S + GK + + ++ Y D + Sbjct: 307 SLARFYLDRSTIHFEDVAGKKGAKQL--------------TFNQIDIEIAAPYAAEDADV 352 Query: 170 TRELFKRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + + P E L + I G +D L+ + + Q K Sbjct: 353 TLQLHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLK 412 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+++ + + L + LF + + + T + +L + Sbjct: 413 ELEKEAFDIAGEEF-NLSSPKQLGVILFEKLELPIIKKTPKGAPSTAEEVLQELALDYPL 471 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ S + L + ++ GR+ + + TGR S QN+P Sbjct: 472 PKVLIEHRGLSKLKSTYTDKLPQMINPATGRIHTSYHQAV-TATGRLSSSDPNLQNIP-- 528 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ AD + IE R++A ++ Sbjct: 529 ----------------------IRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLS 566 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ ++AF G+D++ T A+ F +D+V++EQR K + L Y Sbjct: 567 GDEGLLEAFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMS-----AFGL 621 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + +S+ ++ Q + L G L Sbjct: 622 AKQLGVGRNDAQQYIDVYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYL-------- 673 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + + +A + + + + L ++ Sbjct: 674 -PEINARNGMRRQAAERTAINAPMQGTAADIIKRAMIAVDQW-------------LCPTN 719 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 K + M + VHDE+ Sbjct: 720 PKDE-------------------SAVNAK------------MI----------MQVHDEL 738 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E ++ +V L +MT +PL + + Sbjct: 739 VLEVKESDLDAVREKLKRVMTTTVE--LSVPLIVDVGVGDNW 778 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 201/701 (28%), Gaps = 158/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 ++ ID ET S P A + + A Sbjct: 401 RVAIDTETTSKDP----------HAARLVGISLAVTPWQGCYIPVGHNYAGVPEQLPLDE 450 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLK 110 + + L +L + V N ++ + GI + T + + + Sbjct: 451 VLAVLKPWLESDAQQKVGQNIKYDMHVLANH-GITLRGV-VDDTMLESYVLEAHRTHGMD 508 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + + GK A + Y D + Sbjct: 509 ALAGRHLNRTTITYEEVAGKGAK---------------AIGFDQVALDVATPYAAEDADV 553 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P + E + + G +D D + + +A++ + Sbjct: 554 TLQLHRTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQ 613 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + T L LF G+ +V + T +S+L + Sbjct: 614 ELERQAHELAGQPF-NLGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLALDYPL 672 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L E V GR+ T A TGR + QN+P Sbjct: 673 PKVLLQWRGLAKLKSTYTDKLPEMVDPKTGRVHTTYSQAVA-ITGRLASSDPNLQNIP-- 729 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A I+ Sbjct: 730 ----------------------VRTPEGRRIREAFIAPPGHQMMSADYSQIELRIMAHIS 767 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAFA+GED++ T ++ F PI +V+ EQR KV+ L Y Sbjct: 768 QDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMS-----AFGL 822 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L +++ + F + ++ + Q E + + G L Sbjct: 823 AANLGIERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETVFGRRLWL-------- 874 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + +L DV Sbjct: 875 -PEIGSSNMGRRQMAERAAINAPMQGTAADLI---------------------KLAMIDV 912 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +R G +L +Q VHDE+V Sbjct: 913 HA-----------WLRRENLGARLV---MQ------------------------VHDELV 934 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD + L + M +PL AE + + Sbjct: 935 LEVPDAEVERLKTDLPARMAGVAQ--LSVPLLAEVGVGENW 973 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V++EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 101/707 (14%), Positives = 190/707 (26%), Gaps = 169/707 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------A 52 D+ET S + +A I + D + + Sbjct: 351 IFCFDLETTSLNYM----------EADIVGIGLSLDAGEAAYIPVAHRYLDAPEQLDRAS 400 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + + L D + N ++ + + I++ R T + + + Sbjct: 401 VLAALKPLWEDPAKAKIGQNLKYDISVLARY-DIEVAG-RLEDTMLASYVLNATATRHDM 458 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK A + Y DV+ Sbjct: 459 DSLALKYLGEKTISFEEIAGKGAKQL---------------TFDQIALEQAAPYACEDVD 503 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P DGE L + + G +D + + + + Sbjct: 504 ITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRL 563 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 ++L+ +L + L LF I + T +++L + Sbjct: 564 RELETRAYELAGREF-NLGSPKQLGEILFDELKIPVIKKTPKGAPSTAEAVLEELALDYP 622 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ + + L + V++ R T + TGR S QN+P Sbjct: 623 LPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G ++V AD + IE R++A ++ Sbjct: 681 ----------------------IRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA G DI+ T A+ F +D VS EQR K + Sbjct: 719 GDKGLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + Sbjct: 765 IYGMS------------------------------AWGLGRQLHIERNQAQTYIDRYFDR 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + A RRL ++ Sbjct: 795 YPGVARFMERIRAQAADDGYVETVF--------------------------GRRLYLPEI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 A R +Q + DI+ M + + +V+ Sbjct: 829 NAQNRTRRQAA---ERTAINAP------MQGTAADIIKLAMIDVDRWLREGDFDAWMVMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + M +PL E + Sbjct: 880 VHDELVFEVKEAQVDAFTDAVRQRMEGAAK--LDVPLTVEANAGDNW 924 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 202/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S Y A + ++A + + Sbjct: 334 FAFDTETTSL---------RY-MDADVVGVSFAIEPGEAAYVPFGHDYMGAPEQLDRDTV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 S L L D + N +++ + GI++ T + + + Sbjct: 384 LSQLKPLLEDPKKAKLGQNLKYDKNVLANH-GINLNGIA-EDTMLESYVLNSVGSRHDMD 441 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 442 SLAMQYLGEQTITFESIAGKGAKQL---------------TFNQIELEQAGPYAAEDADI 486 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + + L + + RG I + K + +A+ Sbjct: 487 TLRLHQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMA 546 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ + G + L+ + G+ + T + +L Sbjct: 547 ELEKEAHEEA-GESFNLGSPKQLQAIFYDKMGLPVVKKTPKGAPSTAEPVLQELAHEHTL 605 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + S +TL E + GR+ + + TGR S QN+P Sbjct: 606 PRLILEHRSLSKLKSTYTDTLPELIHHRTGRIHTSYHQAV-TATGRLSSSEPNLQNIP-- 662 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G KLV AD + IE R++A ++ Sbjct: 663 ----------------------IRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLS 700 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF GEDI+ T A+ F +D VS +QR K + Sbjct: 701 GDKGLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINF--------------GL 746 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 747 IYGMS------------------------------AFGLSRQLDVGRHQAQEYIDRYFER 776 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + VL+ ++ + D ++ RRL ++ Sbjct: 777 YPAVLKYMDNIRKQA--------------------------HDDGYVETFYGRRLYLPEI 810 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVL 626 + A R +Q + DI+ M + ++ ++L Sbjct: 811 NARNKQMQQAA---ERTAINAP------MQGTAADIIKRAMVSVEDWLQEHHQDDARMIL 861 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E ++ ++ L M+ S +PL E + Sbjct: 862 QVHDELILEVRESAVDTIREGLEKRMSAAAS--LDVPLLVEAGVGNNW 907 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 196/703 (27%), Gaps = 161/703 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S ++A + ++A + + Sbjct: 356 FAFDTETDSLD----------TQEARLVGMSFAIEAGHAAYLPIGHDYLDAPVQLSLDDV 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108 + + L +E + + N ++ + + GI++ + T + + Sbjct: 406 IAVMKPILENEKIGKIGQNLKYDAEVLENY-GIELKGIAF-DTMLESYVLNSVAGMGRHD 463 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN + GK + + Y D Sbjct: 464 MDSLADRHLNHKTVSFEEIAGKGKKQL---------------TFNQIPLEQAANYAAEDA 508 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + L P + E L + + +G ID + ++I Sbjct: 509 DVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAPTLAAQSKIITAR 568 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272 +L++ +L + L+ LF + + T + +L + Sbjct: 569 LAELEKQAFELAGEEF-NLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNH 627 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L + + + L ++ GR+ + + TGR S QN+P Sbjct: 628 ELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSRDPNLQNIP 686 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G K++ AD + IE R++A Sbjct: 687 ------------------------VRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAH 722 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + + AFA G+DI+ T A+ F P+D+V+ +QR K + L Y Sbjct: 723 LSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIYGMS-----AF 777 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + FE + + + Q E + L G L Sbjct: 778 GLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLA----- 832 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + A++ + M + P Sbjct: 833 ----DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDHWLQTEKPE------- 879 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 D+L VHDE Sbjct: 880 -----------------------------------ADMLM---------------QVHDE 889 Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E ++ V + LM ++ +PLK E + Sbjct: 890 LVFEVKESELEKVQAKVQELMEQSMK--LDVPLKVEVGVGMNW 930 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 101/717 (14%), Positives = 197/717 (27%), Gaps = 178/717 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51 + D ET A+QA + +++ T + Sbjct: 342 KLIAFDTETT----------GIDAQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRD 391 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104 ++ L L D ++ V ++ F+ + GI + + T + + Sbjct: 392 SVLLALKPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAF-DTMLESYVLN 450 Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + L+ S + GK + G Sbjct: 451 STATRHDMDSLAQKYLDHSTVSFQDIAGKGAKQL---------------TFDQIPLEQAG 495 Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L D E L + I +G +D L+ Sbjct: 496 PYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQ 555 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-VDMSE---GTLKSIL 265 + + L+ + ++ + L L+ G+ + ++ T + +L Sbjct: 556 SIELGDKMVALEREAFEIAGEEF-NLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEEVL 614 Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +++ + S + L E ++ GR+ + AS TGR S Sbjct: 615 AKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAS-TGRLSSS 673 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R IA G KL+ AD + Sbjct: 674 DPNLQNIP------------------------VRTAEGRRIRQAFIAPPGYKLLAADYSQ 709 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ ++ + AF N D++ T A+ F + V+ +QR K + Sbjct: 710 IELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINF------ 763 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 764 --------GLIYGMG------------------------------AQKLGKDIGVDTKQA 785 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A++ GV + A Sbjct: 786 KAYIDTYFARYPGVREYMDRTRAQAADQGYVETIF------------------------- 820 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL ++ S + R +Q + DI+ + M Sbjct: 821 -GRRLYLPEI---NSNKPQERAGAERTAINAP------MQGTAADIIKKAMVAVDNWLAS 870 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + M+ + +PL E + Sbjct: 871 SGLDARVILQVHDELVLEVREDLVDQVREEIRGHMSGAAT--LDVPLLVEVGVGNNW 925 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 193/703 (27%), Gaps = 158/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 + ID ET S + A + ++A + Sbjct: 342 KLIAIDTETTSLNYM----------DAKLVGISFAIEAGEAAYLPLAHDYLDAPSQIDMA 391 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 L L + V N ++ +F +GI + + T + + Sbjct: 392 TALEKLRPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVHF-DTMLESYVFNSVASRHD 449 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L + GK + Y D Sbjct: 450 MDGLALKYLGHKNISFEDVAGKGAKQL---------------TFNQIDLDTAAPYAAEDA 494 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + L P + E L + I +G ID L+ + + +AQ+ Sbjct: 495 DITLRLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQK 554 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQ 272 KL+ + ++ + L++ F + + T + +L + Sbjct: 555 IDKLELEAYEIAGEKF-NLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEEVLVELALDY 613 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +IL + + + L V+ + GR+ + A TGR S QN+P Sbjct: 614 PLPKIILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANA-ATGRLSSSDPNLQNIP 672 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G+K++ AD + IE R++A Sbjct: 673 ------------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAH 708 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + + AFA G+DI+ T A+ F ++V+ EQR K + L Y Sbjct: 709 LSQDKGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMS-----AF 763 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 LD+ + + F + + + E L G L Sbjct: 764 GLAKQLDIPRNEAQTYIDTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYL------ 817 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + I P Sbjct: 818 ---PEIRDRNAMRRQAAERAA---------------------------INAPM------- 840 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 TA + + + Q +++ VHDE Sbjct: 841 --------QGTAADIIKKAMINIANWIKTETQG----------------EITMIMQVHDE 876 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E + ++ +C LM + + L AE + Sbjct: 877 LVFEVDEAQAETLKAKICLLMAQAAD--LDVTLLAEAGIGNNW 917 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 409 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 467 DDLAKRYLGHETIAFESIAGKGKGQL---------------TFNQIPLEQATEYAAEDAD 511 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 571 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 572 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 771 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 801 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 802 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 835 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 886 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 931 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLNAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 197/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 308 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 357 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 358 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 415 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 416 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 460 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 461 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 520 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 521 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 579 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 580 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 636 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 637 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 674 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 675 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 720 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 721 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 750 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 751 YPGVLEYMERTRAQAKEQGY--------------------------VETLEGRRLYLPDI 784 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 785 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 835 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 836 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 880 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L A + ++A + + Sbjct: 357 FAFDTETDGLDTLT----------ANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N F+R + + I++ + T + + + Sbjct: 407 LKQLKPILEDEKQLKVGQNLKFDRGVLLRY-DIELKGIAF-DTMLESYVLDSVSGRHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + Y D + Sbjct: 465 SLADRYLGHKTVSFEEIAGKGKNQL---------------TFNQIALEQAAPYAAEDADV 509 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P D E L + I G ID +++ + +A Sbjct: 510 TLQLHQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQNILAAHSKELAIRLN 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + + T L+ L+ + ++ + T + +L+ + Sbjct: 570 ELENKAHELAEEPF-NLSSTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 629 PKVILEYRGLAKLKSTYTDKLPLMINPQSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA ++ AD + IE R++A ++ Sbjct: 686 ----------------------VRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ +KAFA G+DI+ T A+ F TP++KVS EQR K + L Y Sbjct: 724 KDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMS-----AFGL 778 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 779 SRQLNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYL-------- 830 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G + + P + R Sbjct: 831 -PDIKSSNAMRRKGAERAAINAPMQGTAADI----IKRAMISVADWLKQPDAPR------ 879 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +R I+ VHDE+V Sbjct: 880 --------------------------------ARIIM----------------QVHDELV 891 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + +LM + + A +PLK + + + Sbjct: 892 FEVHKDDVEVASEKIRNLMEASMTLA--VPLKVDVGTGENW 930 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 196 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 245 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 246 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 303 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 304 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 348 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 349 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 408 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 409 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 467 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 468 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 524 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 525 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 562 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 563 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 608 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 609 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 638 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 639 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 672 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 673 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 723 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 724 VHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLVEVGSGENW 768 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 99/707 (14%), Positives = 197/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L A + + A + Sbjct: 353 FSFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPTQLDRDTV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L +E + + N F++ + + GID+ T + + + Sbjct: 403 LAQLKPLLENEAIGKIGQNLKFDKGVMARY-GIDLRGI-VFDTMLESYVLDSVAGRHDMD 460 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 461 SLSERYLQHKTITFEEIAGKGKNQL---------------TFNQIPLEQAAVYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + + L + + G ID ++ + + + Q Sbjct: 506 TLRLHETLWAKLEPQQELCQVFKNIDMPLVPVLSRMERTGVLIDTTILAEHSQELTQRLA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ +L G + L L+ + + T + +L+ + Sbjct: 566 ELEVRAHELA-GEAFNLASPKQLGAILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ R+ + + TGR S QN+P Sbjct: 625 PKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 682 ----------------------VRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAF++G DI+ T A+ F P+DKV+ EQR K + Sbjct: 720 RDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 766 IYGMS------------------------------AFGLSRQLGIARNEAQKYMNLYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + A + RRL D+ Sbjct: 796 YPGVQEYMERTRQQAADQGY--------------------------VSTLDGRRLYLPDI 829 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 + + R +Q + DI+ + M K +++ Sbjct: 830 HSRNAM---SRKAAERAAINAP------MQGTAADIIKKAMIAIDDWLQQEKPLATMLMQ 880 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + +LM +PL+ + + Sbjct: 881 VHDELVFEVHHSVLDEVSAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 925 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 187/700 (26%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A + ++A + Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + T + + + Sbjct: 396 EKLRPLLEDAKIKKVGQNLKYDISVLANA-GIKLQGV-VFDTMLESYVFNSIASRHDMDG 453 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 454 LALKYLGHKNIAFEDIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 498 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ + Sbjct: 499 LRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDE 558 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L+ + + L++ F G + T + +L + Sbjct: 559 LETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLP 617 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 618 KVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 673 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ---------------------IRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQ 712 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 713 DAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGLA 767 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + E L G L Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYL--------- 818 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + ++ Sbjct: 819 PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS----------------------- 855 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + ++ T G M + VHDE+V Sbjct: 856 ---------IADWIKTDTQGE----------------IAMI----------MQVHDELVF 880 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + + L AE + Sbjct: 881 EVDADKAETLKLKVCELMAKAAN--LDVELLAEAGIGDNW 918 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 196/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMP 54 +D ET S A I + + + + Sbjct: 332 ALDTETTSLDSFA----------ARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVL 381 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112 + L +L V N+ +++ +F GI + T + + L Sbjct: 382 ARLKSWLESAAHKKVLQNAKYDQHVFANH-GIALSGIA-HDTMLQSYVIESDKGHDLGQL 439 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C L + + GK + Y D + T Sbjct: 440 CTRHLGLATIAYEDLCGKGAKQ---------------ITFDQVDIERAATYAAEDSDVTL 484 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + L P + E + I G ID D++ + + Q+ L Sbjct: 485 RVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMAL 544 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKD 276 + +L + L LF G+ + + T + +LS + Sbjct: 545 EAQAYELAGQPF-NLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPK 603 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L + S + L V+ GR+ A TGR + QN+P Sbjct: 604 LLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQA-AVVTGRLASSDPNLQNIP---- 658 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R+ IA G +V AD + IE R++A ++G+ Sbjct: 659 --------------------VRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGD 698 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + + AFA+GED++ T + F +V +QR + K + Sbjct: 699 ERLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFG--------------LIY 744 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + L +A + + A++ Sbjct: 745 GMS------------------------------AFGLARQLGLERSAAQTYIDRYFARYP 774 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + ++ E + RRL + D++ Sbjct: 775 GVARYMEEARESARQHGYVETAF--------------------------GRRLWFPDIRS 808 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629 R +Q + D++ M ++L VH Sbjct: 809 SNGNRRQGA---ERAAINAP------MQGTAADLIKLAMIAVQNWLEKSALKSRLILQVH 859 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE++ E PD V L LM + +PL E + Sbjct: 860 DELLLEVPDGELMDVRTHLPRLMGQVAE--LKVPLVVEVGVGPNW 902 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 104/719 (14%), Positives = 199/719 (27%), Gaps = 184/719 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET S + A + + + + Sbjct: 345 HVAVDTETTSLNEMR----------AELVGISLCVEAGIACYIPLIHKAAASDDLFGSAD 394 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + + L L D V+ + N ++ +F + + + T +++ Sbjct: 395 LAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY---GVKVAPFDDTMLMSYA 451 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 S+ + L S K + GK+ I D+ Sbjct: 452 QNAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAITFDKVPVADAV------------- 498 Query: 157 QLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLV 206 +Y D + T L++ L PL ER L + + G ++D D + Sbjct: 499 ----KYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTL 554 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262 ++ AQ+ L+ +I + G + L LF + + T Sbjct: 555 SRMSNAFAQKMAGLEAEIHEKA-GQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGA 613 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 IL L+L+ S + L + ++ GR+ + GA+ TGR + Sbjct: 614 DILEDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLA 672 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R +A G L+ D Sbjct: 673 STDPNLQNIP------------------------IRSEEGRRIREAFVAEEGNVLLALDY 708 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +A D +AF NG DI+ T ++ FN P++ + R K + Sbjct: 709 SQIELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAIN----- 763 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A ++ Sbjct: 764 ---------FGVIYGISGF------------------------------GLARNLRIPRA 784 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + G+ + E + Sbjct: 785 EAQAFINTYFERFPGIRTYMDETVEFAKE--------------------------HNFVQ 818 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617 R++ D+ + R +Q + D++ M Sbjct: 819 TLFGRKIHTPDI----NAKGPGAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAI 868 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + +M A +PL + + + Sbjct: 869 KDLPAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAAEPAIKLTVPLTVDAGQGANW 927 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 198/709 (27%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET A+QA + ++A + A+ Sbjct: 336 FAFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAV 385 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D V N+ ++ + + I++ + T + + + Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPPIEMRGVAY-DTMLESYVLNSTATRHDM 444 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + + GK + G Y D + Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQITLDKAGPYAAEDAD 489 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L D E L + I +G +D +L+ + + Sbjct: 490 ITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKM 549 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272 +L+ +L G + L L+ G+ ++ + T +++L Sbjct: 550 AELELRAYELA-GETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGY 608 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G KL+ AD + IE R++A Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF N D++ T A+ F ++ V+ +QR K + Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINF-------------- 749 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D+ L R +Q + DI+ M ++ Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVI 864 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + M++ +PL E + Sbjct: 865 LQVHDELVLEVREDLVEQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 190/701 (27%), Gaps = 160/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + D ET S + A + +++ + + Sbjct: 341 VAFDTETTSLNYMA----------AELVGLSFSVEAGEAAYVPVAHDYEGAPEQLDRDWV 390 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L +L D++ V + ++ + I + + T + + + Sbjct: 391 LEQLKPWLEDDSKAKVGQHLKYDANVLNNYQ-ITLRGIAY-DTMLESYVYNSVSSRHDMN 448 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + + GK + + ++ Y D + Sbjct: 449 TLASKFLGHTCVSFEDIAGKGAKQ---------------KTFNQIDLEVAAFYAAEDADI 493 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + + P + E L + + G ID +L+ IA + + Sbjct: 494 TLRLHQAIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQ 553 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ + G + L++ LF G+ T + IL Sbjct: 554 ELEIKAHEEA-GESFNLSSPKQLQVILFEKQGLPVIKKTPKGQPSTAEPILQELAQDYEL 612 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LI+ + S + L E + GR+ + + TGR S QN+P Sbjct: 613 PRLIMEHRSLSKLKSTYTDKLPEMIQKTGRIHTSYHQA-ITATGRLSSTDPNLQNIP--- 668 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G KLV AD + +E R++A ++ Sbjct: 669 ---------------------IRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQ 707 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AF D++ T A+ F +D+V+ EQR K + L Y Sbjct: 708 DSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMS-----AFGLA 762 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + + FE + + + ++ E + + G L Sbjct: 763 KQLGIGRPEAGKYIKRYFERYPGVQQYMENTREGAKEKGYVETIYGRRLYL--------- 813 Query: 515 QGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + + SA + + M Sbjct: 814 PDIKAKNAMMRQAAERTAINAPMQGSAADIIKRAMIKMHDWL------------------ 855 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 Q +++ VHDE++ Sbjct: 856 -----------------------------QGT-------------DLDVKMIMQVHDELI 873 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + + + +M + +PL E + Sbjct: 874 FEVAEKDLEAAQKKIVDIMQNSSK--IDVPLLVEAGVGDNW 912 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 110/710 (15%), Positives = 211/710 (29%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET S + QA A + Sbjct: 346 YVAVDTETTSLNEM----------QAEFAGICLAVVPGEACYIPVGHKVGDGEGLFADDK 395 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + + L L D ++ + N+ ++ +F + + T +++ Sbjct: 396 LAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFSRH---GLNVAPIDDTMLMSYA 452 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ I D+ Y A+ ++ Sbjct: 453 MFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAITFDKVKIEDAVKYAAEDADVTLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R+ T +++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQLFKPRLHREKVTT--VYETL------ERPLVPVLAQMEMHGVQVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I +L G + L LF G++ + T +L Sbjct: 565 KMAGLEAEIHELA-GQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATGADVLEDLAAQ 623 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + D GR+ + GAS TGR + QN+ Sbjct: 624 HDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSYLQTGAS-TGRLASTDPNLQNI 682 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 683 P------------------------IRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILA 718 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +AG + +AF +GEDI+ T ++ F+ P+D+++ + R K + Sbjct: 719 HVAGIESMKQAFRDGEDIHAATASEMFDVPLDEMTPDVRRQAKAINF------------- 765 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 766 -GVIYGISGF------------------------------GLARNLRIARGEAQGFIDRY 794 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 K+ G+ + D H+ R++ Sbjct: 795 FEKYPGIKEYMDDTVAFAKEHG--------------------------HVATLFGRKIHT 828 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY----DIVL 626 + + R +Q + DI+ M ++L Sbjct: 829 P----EINAKGPHAGFARRAAINAP------IQGSAADIIRRAMIRMPDAISGLPVKMLL 878 Query: 627 TVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + +V + +M P+ +PL + + + Sbjct: 879 QVHDELIFEVEEGGVDKAVSVIRDVMEGAADPAVKLDIPLVVDAGQGANW 928 >gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407] Length = 598 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 221/588 (37%), Positives = 318/588 (54%), Gaps = 22/588 (3%) Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEY 162 G +L C L + K +EGKALI FCK +S T H + W+ F Y Sbjct: 16 GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75 Query: 163 CKRDVEATRELFKRLIPLSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D+EA RE++KRL + E LW DQ INDRG +D++L + + QE+K+L Sbjct: 76 AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + ++TDG ++++ Q AL ++ G++L DM TL+ ++ ++ K+L+ Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAI 195 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 RL +S ++ K L + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + Sbjct: 196 RLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQI 255 Query: 341 TQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + I+AL G + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+W Sbjct: 256 DEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEW 315 Query: 398 KIKAFANG-----EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 K+ AF D+Y YAKAF+ D V K R IGKVMEL LGY GG F T A Sbjct: 316 KLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFA 375 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GLDL + + +A+S + + + + +++ AC+ +K+ WR Sbjct: 376 LVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVFI-ACDSLKRLWRR 434 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 H W +L + ++ L +RR + I LPS R + Y Sbjct: 435 AHPATCDFWYELECTVRTAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPS 489 Query: 573 VKGD---CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + +Y+ N+ + + R +TYGGKL EN+ QA +RD+L M GY IVLT Sbjct: 490 PVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLT 549 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+++E+PDT F+ L +L++ NP WA +PL A G+EA YRK Sbjct: 550 VHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 201/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLISAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E K + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 926 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 109/708 (15%), Positives = 199/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 352 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLDRDWV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 402 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 459 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 460 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDEASPYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ D E L + I G ID + + IAQ Sbjct: 505 TLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLD 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 565 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 624 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K++ D + IE R++A ++ Sbjct: 681 ----------------------IRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ T ID+VS EQR K + Sbjct: 719 GDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 795 YPGVMQYMEDTRSAAADQGYVETIF--------------------------GRRLHLPEI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 K R +Q + DI+ + M + +++ Sbjct: 829 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGQGRVKLLM 879 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 880 QVHDELVFEVEESSLAEIESKVQQLMESAAD--LDVPLVAEAGHGDNW 925 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 104/702 (14%), Positives = 198/702 (28%), Gaps = 161/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D+ET S + +A I A + A+ Sbjct: 346 FCFDLETTSLSYM----------EADIVGVGLALEPGEAAYIPLAHDYLDAPEQLDRQAV 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L D + N ++ + + G ++ T + + + Sbjct: 396 LEALAPLWADAGKAKIGQNLKYDISVLARH-GHEVAG-PLHDTMLESYVLDSTATRHDMD 453 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + Y DV+ Sbjct: 454 SLALKYLGEKTVSFEDIAGKGAKQL---------------TFNQIALEQAAPYACEDVDI 498 Query: 170 TRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + ER L + + G +D + + + + + + Sbjct: 499 TLRLHRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIR 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L LF I + T +++L + Sbjct: 559 ELEQRAHELAGREF-NLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAEAVLEELALDYPL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ S + L + V GRL + + TGR S QN+P Sbjct: 618 PKVIMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAV-TATGRLSSSDPNLQNIP-- 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G +LV AD + IE R++A ++ Sbjct: 675 ----------------------IRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLS 712 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA G DI+ T A+ F +DKVS EQR K + L Y Sbjct: 713 GDKGLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMS-----AWGL 767 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L +++ + F+ + + ++ Q E + + G L Sbjct: 768 GRQLHIERNQAQIYIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHL-------- 819 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + ++ +G + +A + + + D Sbjct: 820 -PEIHSQNRNRRQGAERTAINAPMQGTAADIIKRAMIDVDGWLADG-------------- 864 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 DI + M +V+ VHDE+ Sbjct: 865 -----------------------------------DI--DAM---------MVMQVHDEL 878 Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E ++ + + + + M + L E + Sbjct: 879 VFEVAESEVDAFMDQVKTRMENAAE--LDVALTVEAESGANW 918 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 195/700 (27%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 +D+ET S PL +A I + ++ D + Sbjct: 314 FSVDLETTSLNPL----------EADIVGISLSFRDHEACYIPVGHAYDGAPAQLDRTLV 363 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D V V N ++ + ++ GI + W T V + L Sbjct: 364 LEGLRPLLTDPAVRKVGQNLKYDYQVLRRH-GIVMAGV-WCDTMVASYLINPVRSGHGLD 421 Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L+ + GK + Y C A+ AW L + R Sbjct: 422 SLAVEHLDHRMISYEEVAGKGKDQLNFARVPVEKASTYSCEDADA--AWLLHRLFLPRVA 479 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 EA E D E L + + G ++DL L+ +L + + L+E ++ L Sbjct: 480 EAGME-----RLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMAL 534 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDLILNR 281 + L LF + ++ ++ + + IL Sbjct: 535 APEPF-NLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAAILRY 593 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + L V GR+ + + TGR S QN+P Sbjct: 594 RGLAKLKSTYTDALPRLVHPASGRVHTSYNQTV-TNTGRLSSSEPNLQNIP--------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA G ++ AD + IE RVLA ++ + Sbjct: 644 ---------------VRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCD 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA EDI+ T A+ F + V+ E R Sbjct: 689 AFARDEDIHTRTAAEVFGLFPEMVTPEMRRQA---------------------------- 720 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +A + + A + + + + A+H G Sbjct: 721 ----------------KAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHPGARAF 764 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + RRL D+ + Sbjct: 765 LDGCVAEAEARGYVTTLM--------------------------GRRLPIPDIASSNGNI 798 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 + +Q + DI+ M T+ +++ VHDE+V Sbjct: 799 RAFAQRN---------AVNYPIQGSAADIIKAAMVRVTERMRREGLTSRLIMQVHDELVF 849 Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ ++ L M +PL+A+ + + Sbjct: 850 EVPEGERTAMERLVQHEMEHAAP--LRVPLRADVNVGRNW 887 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54 + ID ET + QA + + A ++E + + Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVL 371 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 + L L + + + N ++ + K GI + R+ T + + + + Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + G Y D + T Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +L P+ D E L + + G ID ++ K + ++ K L+ Sbjct: 475 LRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 ++ ++L G + L+ LF + T +S+L + Sbjct: 535 QEAIQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S ++ L + ++ R+ + A TGR S QN+P Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G ++ AD + IE R++A ++ +D Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AFANG DI+ T ++ F T +D VSKEQR K + G Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYG 734 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + ++ Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 VL+ + + + + RRL ++ Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629 + + R G +Q + DI+ + M +++ VH Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVH 849 Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + LM + +PL + Sbjct: 850 DELVFEVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 193/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S A + ++A + Sbjct: 352 FAFDTETDSLDN----------HAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKARKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA + AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLESVTAEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 765 IYGMS------------------------------AFGLARQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKERGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M K +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDKWLQDEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E V + LM +PL E + + Sbjct: 880 VHDELVFEVHKDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 98/706 (13%), Positives = 197/706 (27%), Gaps = 169/706 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + D ET S + A I + A+D + Sbjct: 346 KRFAFDTETTSLD-------YRIA---QIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNRE 395 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 + + + L DE+V + H+ ++ + + GI + + T + + Sbjct: 396 VILAQIKPILEDESVKKIGHHLKYDAHVLENH-GIHLAGW-YFDTMLASYVLYSVATRHG 453 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L+ + G+ + + + Y D Sbjct: 454 MDDVARLYLSHLTTTYEQVAGRGAKQ---------------KTFNQIPLETAAHYAAEDA 498 Query: 168 EATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQE 216 T L++ L +L + + + G +DL + +L + Sbjct: 499 HVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNT 558 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 + L+ I+++ G + + LF G+ + T +S+L Sbjct: 559 MQNLENQIMEIA-GESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKIEHP- 616 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL S + L + + D T + TGR S QN+P Sbjct: 617 -IAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIP- 674 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+ L+ AD + IE R++A + Sbjct: 675 -----------------------IRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHL 711 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ + AF +G+D++ T A+ P+++V+ +QR K + Sbjct: 712 SQDEALLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNF--------------G 757 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + K + Sbjct: 758 LLYGMSEF------------------------------GLIRQLGFTRQESQDYIKQYFH 787 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ G+ + + + RRL D Sbjct: 788 RYPGIYDYMQRTRQVALEQG--------------------------FVETLLGRRLYTPD 821 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628 + + R Q + DI+ M K ++L V Sbjct: 822 IDARNMMVR---KAAERAAINAPL------QGSAADIIKMAMIEVDKMLPKDQAKMLLQV 872 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E + + L +M +PL E + K + Sbjct: 873 HDELVFEVDEDIADELAPKLAEVMQSVLQ--ISVPLVVEVGKGKNW 916 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 100/704 (14%), Positives = 202/704 (28%), Gaps = 168/704 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPS 55 ID ET S + A I + A ++ T + + Sbjct: 321 FCIDTETTSLDVMM----------AEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLT 370 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L + T+ + N ++ + + GI + + T + + + + Sbjct: 371 ALNPILENPTIKKIGQNLKYDYSVLRNH-GITLKGI-YYDTMLESYVLNSGSGRHDMDSL 428 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + G Y D + T Sbjct: 429 ALKYLGHKTISYEEIAGKGAKQL---------------RFDQIPVEKAGAYAAEDADITL 473 Query: 172 ELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +L +L PL E L + + G ID + + E + + + L+E Sbjct: 474 QLHHKLYPLIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEE 533 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLI 278 + + L + L+ LF + + T +++L +I Sbjct: 534 EALHLAGKPF-NLNSPKQLQEILFDSHKLPIIAKTPTGQPSTAEAVLQELAYDYRLAAVI 592 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + + ++ L + ++ R+ + + TGR S QN+P Sbjct: 593 LEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAV-TATGRLSSSEPNLQNIP------ 645 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ IA ++ AD + IE R++A ++ ++ Sbjct: 646 ------------------IRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDEN 687 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +KAFANG D++ T ++ F P+++++ EQR K + G+ Sbjct: 688 LLKAFANGWDVHAATASEIFQIPLEEINNEQRRRAKAINF--------------GLIYGM 733 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + + + + ++ V Sbjct: 734 SSFGLAKQI------------------------------GVERQDAQYYIDTYFQRYPKV 763 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 L+ + + RRL ++ Sbjct: 764 LEYMNRTRQQAHHQGY--------------------------VETLFGRRLYLPEIN--- 794 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHD 630 LMR++ +Q + DI+ M K +++ VHD Sbjct: 795 ------ARNLMRQKAAERTAINAPMQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHD 848 Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E S + LM + +PL + Sbjct: 849 ELVFEVNKNAIESSKEMIRELMEHTVT--LSVPLVVSIGTGANW 890 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 97/702 (13%), Positives = 196/702 (27%), Gaps = 159/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S ++A + ++A + + Sbjct: 356 FAFDTETDSLD----------TQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQLSLDEV 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108 + + L +E + + N ++ + I++ + T + + Sbjct: 406 IAVMKPILENEKIGKIGQNLKYDAEVLLNY-DIELKGIAF-DTMLESYVLNSVAGMGRHD 463 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN + GK + + Y D Sbjct: 464 MDSLADRHLNHKTVSFEEIAGKGKKQL---------------TFNQIPLEQAANYAAEDA 508 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + L P + E L + + +G ID ++ ++I Sbjct: 509 DVTLLLHQALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITAR 568 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272 +L++ L + L+ LF + + T + +L + Sbjct: 569 LAELEKQAFDLAGEEF-NLASPKQLQTILFEKLQLPVIKKTPSGAASTNEEVLEELALNH 627 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L+L + + + L ++ + T + TGR S QN+P Sbjct: 628 ALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A +G K++ AD + IE R++A + Sbjct: 687 -----------------------VRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHL 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + AFA G+DI+ T A+ F P+++V+ +QR K + L Y Sbjct: 724 SQDKGLLTAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMS-----AFG 778 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + FE + + + Q E + L G L Sbjct: 779 LARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLA------ 832 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + A++ + M + PS Sbjct: 833 ---DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDNWLETEKPS-------- 879 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 D +++ VHDE+ Sbjct: 880 ----------------------------------AD---------------MLMQVHDEL 890 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E ++ V + LM ++ + +PLK E + Sbjct: 891 VFEVKESELEKVQAKVQELMEQSMT--LDVPLKVEVGVGSNW 930 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 113/708 (15%), Positives = 198/708 (27%), Gaps = 171/708 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 D ET S QA + ++A E + Sbjct: 323 SFDTETTSLN----------VMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQLNRQWVL 372 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 L D + + H+ ++ + GI + + T + + SL + Sbjct: 373 QQLKPLFEDPKQIKIGHHLKYDMNILA-HYGIQLRGIDF-DTMLESYLLDSASNQHSLDS 430 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A L+ + GK + + Q G Y D Sbjct: 431 AALKHLDHKTIRFEEIAGKGAKQ---------------KTFNQINLQDAGPYAAEDAAIA 475 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P D E L + + G ID L+ K IA+ Sbjct: 476 LRLHETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLT 535 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L++ +L + L+ LF G+ + T +++L +T Sbjct: 536 LEQQAFQLAGKPF-NLGSPKQLQTILFDDHGLPILEKTPKGQASTSENVLQALALTFPLP 594 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL S + L E ++ GR+ + A TGR S QN+P Sbjct: 595 KIILKHRRLSKLKSTYTDKLPEQINPKTGRVHTSYHQA-AVVTGRLSSSDPNLQNIP--- 650 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G ++ AD + IE R++A + Sbjct: 651 ---------------------ARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQ 689 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G DI+ T A+ N P+++V+ EQR Sbjct: 690 DKGLLKAFAQGLDIHQATAAEVLNIPLERVTHEQRRSA--------------KAINFGLM 735 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + + ++ Sbjct: 736 YGMS------------------------------AFGLARQLGISREDAKNYIERYFDRY 765 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + + + + RRL + + Sbjct: 766 PGVKRYMERIRQRAHEQRYVTTLF--------------------------GRRLNLAFIN 799 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628 + S A+ R Q + DI+ + M K +++ V Sbjct: 800 SNDSLQRRAS---ERAAINAPL------QGSAADIIKKAMIRIDAELIKKKLDAHMIMQV 850 Query: 629 HDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE+V E + L LM + +PL + + K Sbjct: 851 HDELVFEIAEHDLQRAKRLIENLMVHTTT--LSVPLVVDIQIGSNWNK 896 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 115/711 (16%), Positives = 206/711 (28%), Gaps = 165/711 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + D ET S A QA + + + T + Sbjct: 412 YVAFDTETTSLD----------AMQAELVGISLSCKPGKACYIPLTHKDGEGDLLGGGGL 461 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D ++ +A N ++ ++ + G+D+ + T +L+ T Sbjct: 462 LPDQIPLDDALKALKPMLEDRGILKIAQNLKYDWLVMTRH-GVDVDP--YDDTMLLSYTV 518 Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L K G K++I + Y A+ ++ W Sbjct: 519 DAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVAIDKATAYAAEDADVTLRLW 578 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 D AT +++ L ER + + + RG +D ++ +L AQ Sbjct: 579 LTLKPRLASDHMAT--VYETL------ERPMVPVLARMEKRGISVDRQMLSRLSGDFAQG 630 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271 L+ +I +L G + L LF G+ ++ T +L Sbjct: 631 AAALESEIYELA-GETFNVGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQVLEDLAAEG 689 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 I+ S + L ++ + + T A+ TGR S QN+P Sbjct: 690 HPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLSSSEPNLQNIP 749 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 A +R IA G+KL+ AD + IE RVLA Sbjct: 750 ------------------------VRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAH 785 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A KAF +G DI+ T ++ F TPI+ + R K + Sbjct: 786 MADIPQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAIN--------------F 831 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + K + Sbjct: 832 GIIYGIS------------------------------AFGLANQLGISRGEAGDYIKTYF 861 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + + + R+ Y Sbjct: 862 QRFPGIKDYMEAVKKQVHADGYVTTIF--------------------------GRKAHYP 895 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625 +V + Y +Q + DIL M K ++ Sbjct: 896 EVNTKNPNMR---------AFYERAAINAPIQGSAADILRRAMVRMEDRLTASKLDAQML 946 Query: 626 LTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P+ ++ + +M P+ +PL+ + A + Sbjct: 947 LQVHDELIFEVPEDQVEATIPLIKDVMENACDPALKFSVPLQVDARAADNW 997 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIPRKEAQKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + RRL D+ Sbjct: 795 YPGVLEYMERTRAQAKEQGYVETLE--------------------------GRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 K + + +Q + DI+ M +++ Sbjct: 829 KSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM +PL E + + Sbjct: 880 VHDELVFEVHKGDLDAVSKRIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 109/708 (15%), Positives = 201/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+T V N ++ + + I++ + T + + + Sbjct: 404 LAQLKPILEDDTQAKVGQNLKYDASVLARY-NIEMKGIK-HDTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDQASPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ + E L + I G ID + + IAQ Sbjct: 507 TLRLHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLD 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ T ID+VS EQR K + Sbjct: 721 GDKALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNTYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 797 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 K R +Q + DI+ + M + +++ Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 881 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM A +PL AE + Sbjct: 882 QVHDELVFEVQESALTEIESKVQQLMESAA--ALDVPLVAEAGHGDNW 927 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 201/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP---- 54 + ID ET S + +A + ++A + + Sbjct: 341 IAIDTETTSLNYM----------EAKLVGISFAVEAGKAAYLPLEHDYVDAPEQLDRALV 390 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++ +F +GI + ++ T + + ++ Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFAN-IGITLRGVQF-DTMLESYVFNSVASKHNMD 448 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + Y D + Sbjct: 449 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQIPLETAAPYAAEDADI 493 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L I +G ID L+ + E +A++ Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKID 553 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ ++ + L+ F G + T + +L + Sbjct: 554 ELEHKAHEIAGEPF-NLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 613 PKIILEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 669 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA GKK++ AD + IE R++A ++ Sbjct: 670 ----------------------IRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLS 707 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F+ +V+ +QR K + L Y Sbjct: 708 QDTGLLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMS-----AFGL 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + + + + L G L Sbjct: 763 AKQLDIPRAEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYL-------- 814 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + I P Sbjct: 815 -PAIKDRNAMRRQAAERAA---------------------------INAPM--------- 837 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 TA + + + E Q +I+ +++ VHDE+V Sbjct: 838 ------QGTAADIIKKAMINIAQWIETETQG---EII-------------MIMQVHDELV 875 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + S+ +C LM + L AE + Sbjct: 876 FEVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 201/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 34 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 83 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 84 TALAAIKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 141 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 142 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 186 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 187 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 246 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 247 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 305 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 306 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 363 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 364 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 400 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 401 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 446 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 447 LIYGMS------------------------------AFGLSRQLGISRADAQKYMNLYFQ 476 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 477 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 510 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 511 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHDPDIEMIMQ 561 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E K + Sbjct: 562 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 606 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 99/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L A + + A + Sbjct: 352 FSFDTETDGLDTLT----------ANLVGISLAIKPGEAAYLPLGHDYLDAPMQLDRDKV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+V + N F++ + + GID+ + T + + + Sbjct: 402 LAVLKPLLEDESVAKIGQNLKFDKGVMARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 459 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 460 SLSDRYLQHKTITFEEIAGKGKNQL---------------TFNQIPLEQAAVYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + + L + + G ID ++ + + + Q Sbjct: 505 TLRLHETLWAKLEPQPELCKVFQNIDMPLVPVLSRMERTGVLIDTTILGEHSQELTQRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ +L G + L L+ + + T + +L+ + Sbjct: 565 ELEVQAHELA-GEAFNLSSPKQLGTILYEKLQLPVIKKTPKGAPSTNEEVLAELALDHPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ R+ + + TGR S QN+P Sbjct: 624 PKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 681 ----------------------VRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AF+NG DI+ T A+ F P+D+V+ EQR K + Sbjct: 719 RDAGLLRAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLAIPRNEAQKYMNLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + A + RRL D+ Sbjct: 795 YPGVQEYMERTRQQAADQGY--------------------------VSTLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 + R +Q + DI+ + M K +++ Sbjct: 829 HSRNAMSR---KAAERAAINAP------MQGTAADIIKKAMIAIDGWLQQEKPLVTMLMQ 879 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + +LM +PL+ + + Sbjct: 880 VHDELVFEVHHSVLDEASAKIRNLMEGCMQ--LDVPLQVDIGTGSNW 924 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 104/717 (14%), Positives = 200/717 (27%), Gaps = 178/717 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51 D ET A+QA + ++A T + Sbjct: 352 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 401 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104 + L L D + V ++ F+ + GI + + T + + Sbjct: 402 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAF-DTMLESYVLN 460 Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + LN + + GK A + G Sbjct: 461 STATRHDMDSLAQKYLNHTTVSFQDIAGKGAKQL---------------TFDQIALEQAG 505 Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L D E L + I +G +D DL+ Sbjct: 506 PYAAEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQ 565 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSIL 265 + + L+ + ++ + L + L+ G+ ++ + T + +L Sbjct: 566 SIELGNKMVALEREAFEIAGEEF-NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVL 624 Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +++ + S + L E ++ GR+ + AS TGR S Sbjct: 625 AKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAS-TGRLSSS 683 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A G KL+ AD + Sbjct: 684 DPNLQNIP------------------------VRTAEGRRIRQAFVAPKGYKLLAADYSQ 719 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ ++ + AF N D++ T A+ F +++V+ +QR K + Sbjct: 720 IELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF------ 773 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 774 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 795 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A++ GV + A + Sbjct: 796 KAYIDTYFARYPGVREYMDRTRAQAADQG--------------------------FVETI 829 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL D+ S + R +Q + DI+ + M Sbjct: 830 FGRRLYLPDI---NSNKPQERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCA 880 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + M++ +PL E + Sbjct: 881 SGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 935 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 108/711 (15%), Positives = 210/711 (29%), Gaps = 178/711 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S L A + + A + Sbjct: 353 FAFDTETDSLDVL----------SANLVGISCADKPGQACYIPLAHDYLDAPHQLDRQYV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE + + N ++ + + GI + + T + + + Sbjct: 403 LARLQPLLEDEGIAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMD 460 Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + + EY D + Sbjct: 461 SLSARHLDHKTITFEEIAGKGKGQL---------------TFNQIPLEQASEYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P+ +GE L + + G ID ++ + + +A + Sbjct: 506 TLQLHQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLE 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSIL-SHSNITQL 273 L++ + T L+ LF + ++ + T + +L + Sbjct: 566 ALEQQAHSEAGEPF-NLSSTKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYA 624 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L V+ GR+ + + TGR S QN+P Sbjct: 625 LPQVILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 682 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + IE R++A + Sbjct: 683 -----------------------VRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHL 719 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ ++AFA G+DI+ T A+ F P++ VS +QR K + Sbjct: 720 SGDKGLLQAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAIN--------------FG 765 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 766 LIYGMS------------------------------AFGLARQLNIGRGEAQRYMDLYFE 795 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + + + + RRL Sbjct: 796 RYPGVLAYMERTRQLASDQGY--------------------------VETLDGRRLYLP- 828 Query: 573 VKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625 + + N + R +Q + DI+ M + ++ Sbjct: 829 ---EINARNGMRRKAAERAAINAP------MQGTAADIIKRAMIAVDGWLQETQLEVRMI 879 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSL---MTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E P++ +V +C + M + S A +PLK + + + Sbjct: 880 MQVHDELVFEVPESQVEAV--VCQVRVLMENSLSLA--VPLKVDIGCGENW 926 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 196/701 (27%), Gaps = 156/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP--- 54 +D+ET S PL +A I + ++ D +P Sbjct: 314 TFAVDLETTSLNPL----------EAEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363 Query: 55 --SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 L L D + V N ++ +F++ GI++ W T V + L Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH-GIEL-GGVWCDTMVASYLLNPVRSGHGL 421 Query: 110 KNAC-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L+ + GK + + Y C ++ AW L + R Sbjct: 422 DSLAVEHLDHKMISYEEVAGKGKEQVNFAQVPVEKASTYSCEDSDA--AWLLHRLFLPRV 479 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ D E L + + G ++DL L+ +L ++ +L+ I Sbjct: 480 -----AVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELEGRITG 534 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMS------EGTLKSILSHSNITQLAKDLILN 280 L + L LF + + ++ + + LIL Sbjct: 535 LAPEPF-NLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIAALILQ 593 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L + V GR+ + + TGR S QN+P Sbjct: 594 YRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTV-TNTGRLSSSEPNLQNIP-------- 644 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G L+ AD + IE RVLA + + Sbjct: 645 ----------------VRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFC 688 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AFA EDI+ T A+ F + V+ E R Sbjct: 689 DAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQA--------------------------- 721 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +A + + A + + + A+H G Sbjct: 722 -----------------KAINFGVIYGQGAFSLAKQLGIATKVAREFIDNYFARHPGARA 764 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + RRL D+K Sbjct: 765 FLDGCVREAEEKGHVTTLL--------------------------GRRLPIPDIKSANGN 798 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 + + +Q + DI+ E M T G +++ VHDE+V Sbjct: 799 IRAFAQRN---------AVNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQVHDELV 849 Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E P ++ L M S +PLK + + Sbjct: 850 FEVPKGEVVAMEQLVRREMEHAVS--LRVPLKVDINHGGNW 888 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 195/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + + ++A + + Sbjct: 354 FAFDTETDSLDTISTT----------LVGVSFAINAGEAAYLPLGHDYLDAPEQLDRDKV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D +V+ + N F++ + + GI + + T + + + Sbjct: 404 LALLKPVLEDASVLKIGQNLKFDKGVMARY-GITLRGIAF-DTMLESYVLDSVAGRHDMD 461 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + + Y D + Sbjct: 462 SLSERYLNHKTITFEEIAGKGKNQL---------------TFNQIPLEQAAVYAAEDADV 506 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + + +G ID ++ + + + Q Sbjct: 507 TLRLHQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLA 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ +L G + + T L+ L+ + + T + +L+ + Sbjct: 567 ELEVRAHELA-GEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPSTNEEVLAELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ R+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAF++G DI+ T A+ F PIDKV+ EQR K + L Y Sbjct: 721 CDAGLLKAFSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + + Q E L G L Sbjct: 776 SRQLGIGRNEAQKYMNLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + + + + P Sbjct: 828 -PDIHSRNAISRKAAERAAINAPMQGTAADI-IKKAMASIDAWLLSQEEP---------- 875 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q VHDE+V Sbjct: 876 -----------------------LINMIMQ------------------------VHDELV 888 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ + +LM +PL+ + K + Sbjct: 889 FEVHESVLEGAKAKIKALMESCMQ--LNVPLQVDVGSGKNW 927 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 107/720 (14%), Positives = 200/720 (27%), Gaps = 181/720 (25%) Query: 1 MSKL------FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---- 50 M ++ ID ET S P+ QA + + + + + Sbjct: 349 MRRIEAAPLVAIDTETTSLDPM----------QAQLVGISLSVEPGVACYIPVAHRGPDV 398 Query: 51 -----------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + +L D + + N ++ +F G+ + T + Sbjct: 399 AGLPDHGQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANH-GVKLRGVA-HDTMLQ 456 Query: 100 ARTNGLP--SSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + + L + + GK Sbjct: 457 SYVLASHRNHGMDSLAERLLSLKTITYEEVCGKGASQIG---------------FDQIDL 501 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDL 205 EY D + T L +++ P + E + ++ Q + G ID + Sbjct: 502 ARATEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAER 561 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTL 261 + + Q L++ + + + LF + +V + T Sbjct: 562 LAAQSAELGQRMLALEQAAYEAAGQPF-NLGSPKQIGEILFSQMKLPVVKKTASGAPSTD 620 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 + +L L+L+ + + L + V+ GR+ + A TGR Sbjct: 621 EEVLQKLAEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATA-VTGRL 679 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P +R IA G +V AD Sbjct: 680 ASTEPNLQNIP------------------------VRTEEGRRIREAFIAEPGSVIVSAD 715 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A I+G++ ++AFANGEDI+ T + F + VS EQ Sbjct: 716 YSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQ------------ 763 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + L A + Sbjct: 764 --------------------------------RRYAKVINFGLIYGMSAFGLAGNLGIER 791 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 A + + ++ GV ++ + Sbjct: 792 EAAKHYIDRYFMRYPGVAHYMEETRQTAREQGYVETVF---------------------- 829 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617 RRL D+ G A R +Q + D++ M Sbjct: 830 ----GRRLWLPDINGGSGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQGW 876 Query: 618 -TKNGY--DIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++G ++ VHDE+V E P+ V L LM +PL AE + Sbjct: 877 LERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPELMCSVAQ--LRVPLVAEVGSGANW 934 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + A + ++A ++ + Sbjct: 360 VAFDTETDSLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWV 409 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N F+ + + I++ ++ T + + + Sbjct: 410 LAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHDMD 467 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 468 SLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLDVAGPYAAEDADI 512 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L + E L + I G ID L+ IA Sbjct: 513 TLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLD 572 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ ++ + + L+ LF G+ + + T + +L + Sbjct: 573 ELETKAYEIAEQEF-NLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPL 631 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L + V+ GR+ + + TGR S QN+P Sbjct: 632 PKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 688 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G K++ D + IE R++A ++ Sbjct: 689 ----------------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLS 726 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ PI+ V+ EQR K + Sbjct: 727 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 772 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 773 IYGMS------------------------------AFGLAKQLDMGRNEAQDYMNVYFER 802 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 803 YPGVLEYMESTRIHASEQGY--------------------------VETLFGRRLYLPDI 836 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 K R +Q + DI+ M + +++ Sbjct: 837 KSRN---GIRRKAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 887 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ +V + LM +PL A+ + Sbjct: 888 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADTGSGDNW 933 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 200/717 (27%), Gaps = 178/717 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51 D ET A+QA + ++A T + Sbjct: 348 KLFAFDTETT----------GIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRD 397 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104 + L L D + V ++ F+ + GI + + T + + Sbjct: 398 TVLRALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAF-DTMLESYVLN 456 Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + L+ + + GK A + G Sbjct: 457 STATRHDMDSLAQKYLDHTTVSFQDIAGKGAKQL---------------TFDQIALEQAG 501 Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L D E L + I +G +D +L+ Sbjct: 502 PYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQ 561 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSIL 265 + + L+ + ++ + L + L+ G+ ++ + T + +L Sbjct: 562 SIELGNKMIALEREAFEIAGEEF-NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEEVL 620 Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +++ + S + L E ++ GR+ + AS TGR S Sbjct: 621 AKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAS-TGRLSSS 679 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A G KL+ AD + Sbjct: 680 DPNLQNIP------------------------VRTAEGRRIRQAFVAPKGYKLLAADYSQ 715 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ ++ + AF N D++ T A+ F +++V+ +QR K + Sbjct: 716 IELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINF------ 769 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 770 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 791 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A++ GV + A + Sbjct: 792 KAYIDTYFARYPGVREYMDRTRAQAADQG--------------------------FVETI 825 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL D+ S + R +Q + DI+ + M Sbjct: 826 FGRRLYLPDI---NSNKPQERAAAERTAINAP------MQGTAADIIKKAMVAVDNWLCA 876 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + M++ +PL E + Sbjct: 877 SGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSEAAK--LDVPLLVEVGVGNNW 931 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 101/692 (14%), Positives = 195/692 (28%), Gaps = 141/692 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D+ET S + +A I ++A + + Sbjct: 325 FAFDLETNSLDYI----------EAEIVGLSFAIKPKEAAYVPLAHDYDAAPLQLAREGV 374 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L+D V N F+R + GI++ R + + + ++ Sbjct: 375 LARLQPLLQDSNRGKVGQNLKFDRNVLANY-GIELEGIR-HDSMLESYVLHSTASRHNMD 432 Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L S + GK + Y A+ + + Sbjct: 433 SLALKYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQLHHYFWPRLQQE 492 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 EA L++ L E L + + G +ID + + +K++++ +L Sbjct: 493 EALCRLYQEL------EIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQEAFEL 546 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + ++ L+ + + T +++L + L+L A Sbjct: 547 AGEPF-NLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLLLEYRA 605 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + L V+ GR+ + + TGR S QN+P Sbjct: 606 LSKLKSTYTDRLPLQVNPRTGRVHTSYHQAV-TATGRLSSSDPNLQNIP----------- 653 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G L+ AD + IE R++A ++ ++ + AF Sbjct: 654 -------------IRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAF 700 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GEDI+ T A+ F TP++ V+ EQR K + L Y A L + + Sbjct: 701 EAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAH-----GLAQQLGISRS 755 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + F + +++ + Q + + L G L + Sbjct: 756 AAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYL---------PEIHSRQA 806 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + Sbjct: 807 QRRNQAERMAINAPMQGTAADII------------------------------------- 829 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 ++R + K Q +++ VHDE+V E + Sbjct: 830 -KRAMLRADQWLQK------QGS---------------NARMIMQVHDELVFEVAEAELD 867 Query: 643 -SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M +PL E + Sbjct: 868 TTTAAIRENMAGAAQ--IKVPLIVEMGSGANW 897 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 99/707 (14%), Positives = 189/707 (26%), Gaps = 170/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 +D ET S + QA + + A + + Sbjct: 344 FALDTETTSLNYM----------QAELVGVSVAVEAGKAAYIPFGHNYPGAPDQLDKQFV 393 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ + V N ++ + + +GI + + T + + + Sbjct: 394 LDALKPILEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAY-DTMLESYVLDSVATRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + Y D + Sbjct: 453 SLALKYLGRKTISFEEIAGKGAKQL---------------TFNQVGLHEASRYAAEDADV 497 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G +D L+ + +A+ Sbjct: 498 TLRLHQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMA 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L E ++ + L L+ I + T +++L + Sbjct: 558 ELQEKACEIAGQEF-NLSSPKQLGEILYQKLEIPVIKKTPKGAPSTAEAVLQELALEYPL 616 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I++ + + L E ++ GR+ + A TGR S QN+P Sbjct: 617 PQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 673 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G+K+V D + IE R++A ++ Sbjct: 674 ----------------------VRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLS 711 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + AF G DI+ T A+ + +D+VS R K + Sbjct: 712 DDKGLTDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINF--------------GL 757 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + L + + + Sbjct: 758 IYGMS------------------------------AFGLAKQLGLPRKEAQEYIDLYFER 787 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + D A RRL ++ Sbjct: 788 YPGVKKYMADTRALAADNGYVETVY--------------------------GRRLYLPEI 821 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 A R +Q + DI+ + M +++ Sbjct: 822 HSKNGQRRQAA---ERAAINAP------MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQ 872 Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + + M +PL + + + Sbjct: 873 VHDELVFEVAEDQVDDLVREVKARMESAAE--LKVPLIVDAGIGENW 917 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 200/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPAQLERDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDEASPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ D E L + I G ID + + IAQ Sbjct: 507 TLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLD 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 567 ELEQQAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ T ID+VS EQR K + Sbjct: 721 GDKALLEAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + RRL ++ Sbjct: 797 YPGVMQYMEDTRSTASEQGYVETIY--------------------------GRRLHLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M + +++ Sbjct: 831 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQTEGDGRVKLLM 881 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 882 QVHDELVFEVQESALTEIESKVQELMESAAE--LDVPLVAEAGHGDNW 927 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 200/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + +A + ++A ++ + Sbjct: 350 IAFDTETDSLDYM----------EANLVGVSFAIEEGVAAYVPVAHDYMDAPKQLERDWV 399 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D + V N ++ + + GID+ ++ T + + + Sbjct: 400 LEQLKPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIKF-DTMLASYVYNSVAGKHDMD 457 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 458 SLALRFLQHSCISFEQVAGKGKKQL---------------TFNQIDLEQAAPYAAEDADV 502 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +RL D E L + I G ID + + IA Sbjct: 503 TFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRLD 562 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 L++ + + L+ LF G+ + T + +L + Sbjct: 563 ALEQQAFDIAGQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 621 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + IL + + L + ++ GR+ + + TGR S QN+P Sbjct: 622 PEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 678 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 679 ----------------------IRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHLS 716 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ I +V+ EQR K + Sbjct: 717 GDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNF--------------GL 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 763 IYGMS------------------------------AFGLAKQLGIPRGEAQQYMDTYFER 792 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 793 YPGVMQYMEDTRSIAAEQGYVETIF--------------------------GRRLHLPEI 826 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 827 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDDWIQTEGQGRVKLLM 877 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +T + + +LM + +PL AE + + Sbjct: 878 QVHDELVFEVEETSLPEIESKIRNLMEQAAQ--LKVPLVAEAGHGENW 923 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF + + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLELPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRADAQKYMDLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ E + RRL D Sbjct: 797 RYPSVQQFMTDIREKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPDIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + M +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGQNW 926 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 356 FAFDTETDSLDYMV----------ANLVGLSFATDEGVAAYVPVAHDYLDAPQQLDRDWV 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 406 LEQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 463 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 464 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 508 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ + E L + I G ID L+ + IA Sbjct: 509 TLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLD 568 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 569 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 627 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 628 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 684 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 685 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 722 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ I+ V+ EQR K + Sbjct: 723 GDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GL 768 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 769 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 798 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 799 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 832 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M + +++ Sbjct: 833 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 883 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 884 QVHDELVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 106/704 (15%), Positives = 202/704 (28%), Gaps = 159/704 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET S L + ++A Sbjct: 353 KIFAFDTETDSLDVLTTN----------LVGLSFATAPSVAAYIPVGHDYLDAPDQLDRD 402 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + + L L D ++ V N +++ + + GI++ + T + + Sbjct: 403 DVLAKLKPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIAF-DTMLESYDLDSVAGRHD 460 Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN + GK + A + Y D Sbjct: 461 MDSLAERHLNHKTITFEEIAGKGKSQL---------------TFNQIALEQATPYAAEDA 505 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L P + E L + + G ID +++ K + +A Sbjct: 506 DVTLQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIR 565 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271 +L++ + + L+ LF + +V + T + +L+ + Sbjct: 566 LDELEKKAHEAAGEPF-NLSSPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQG 624 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +IL + + L + ++ GR+ + + TGR S QN+ Sbjct: 625 FELPTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAV-TATGRLSSSDPNLQNI 683 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G K+V AD + IE R++A Sbjct: 684 P------------------------VRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMA 719 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G+ + AFA G+DI+ T A+ F ++ V+ EQR K + L Y Sbjct: 720 HLSGDKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMS-----A 774 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L++ + FE + + + Q E + L G L Sbjct: 775 FGLARQLNIARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYL----- 829 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + +G + R ++ + P R Sbjct: 830 ----PEIHSRNGMRRKGAERAAINAPMQGTAADI-IKRAMISVDAWLLQQKEPLVR---- 880 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 M + VHD Sbjct: 881 -------------------------------------------MI----------MQVHD 887 Query: 631 EIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E ++ V + LM ++ A +PLK + + + Sbjct: 888 ELVFEVHESVIEQTVEKVRELMEQSLELA--VPLKVDVGTGENW 929 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54 + ID ET + QA + + A ++E + + Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVL 371 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 + L L + + + N ++ + K GI + R+ T + + + + Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + G Y D + T Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +L P+ D E L + + G ID ++ K + ++ K L+ Sbjct: 475 LRLHHKLYPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLE 534 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 ++ V+L G + L+ LF + T +S+L + Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S ++ L + ++ R+ + A TGR S QN+P Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G ++ AD + IE R++A ++ +D Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AFANG DI+ T ++ F T ++ VSKEQR K + G Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYG 734 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + ++ Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 VL+ + + + + RRL ++ Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629 + + R G +Q + DI+ + M +++ VH Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVH 849 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + LM + +PL + Sbjct: 850 DELVFEVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGIGSNW 892 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 187/700 (26%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A + ++A + Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + T + + + Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLQGV-VFDTMLESYVFNSVASRHDMDG 453 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 454 LALKYLGHKNIAFEDIAGKGAKQL---------------TFNQIQLETAAPYAAEDADIT 498 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ + Sbjct: 499 LRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDE 558 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L+ + + L++ F G + T + +L + Sbjct: 559 LETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLP 617 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 618 KVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 673 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ---------------------IRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQ 712 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 713 DAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGLA 767 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + E L G L Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYL--------- 818 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + ++ Sbjct: 819 PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS----------------------- 855 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + ++ T G M + VHDE+V Sbjct: 856 ---------IADWIKTDTQGE----------------IAMI----------MQVHDELVF 880 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + + L AE + Sbjct: 881 EVDADKAETLKLKVCELMAKAAN--LDVELLAEAGIGDNW 918 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET A+QA + ++A + A+ Sbjct: 336 FAFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAV 385 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D V N+ ++ + + I++ + T + + + Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTATRHDM 444 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + + GK + G Y D + Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQINLDKAGPYAAEDAD 489 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L D E L + I +G +D +L+ + + Sbjct: 490 ITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKM 549 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272 +L+ +L G + L L+ G+ ++ + T +++L + Sbjct: 550 AELELRAYELA-GETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGY 608 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G KL+ AD + IE R++A Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF N D++ T A+ F ++ V+ +QR K + Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINF-------------- 749 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D+ L R +Q + DI+ M ++ Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVI 864 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + M++ +PL E + Sbjct: 865 LQVHDELVLEVREDLVQQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 195/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + ID ET S + A + ++A + Sbjct: 368 IAIDTETTSLDYMT----------AKLVGISFAVEVGKAAYLPLAHDYLDAPEQLDFDEA 417 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D + V N ++ +F +GI + + T + + ++ Sbjct: 418 IAKLKPLLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVAF-DTMLESYVFNSVASKHNMD 475 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 476 DLALKYLGHKNISFEEIAGKGAKQL---------------TFNQIDLETAAPYAAEDADI 520 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + I +G ID ++ + + IA Sbjct: 521 TLRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISID 580 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 KL++D ++ G + L+ F G + T + +L + Sbjct: 581 KLEQDAFEIA-GETFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 639 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V++ GR+ + A TGR S QN+P Sbjct: 640 PKIILQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 696 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA GKK++ AD + IE R++A ++ Sbjct: 697 ----------------------IRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLS 734 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F +V+ EQR K + L Y Sbjct: 735 QDKGLLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMS-----AFGL 789 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + + + + + L G L Sbjct: 790 ARQLDIPRGEAQKYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYL-------- 841 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 842 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + T+G M + VHDE+V Sbjct: 878 ---------NIASWIESETHGE----------------ITMI----------MQVHDELV 902 Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C +M S + L AEG + Sbjct: 903 FEVDSDKAEALKEQICKMMADAVS--LDVELLAEGGIGDNW 941 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 356 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 406 LEQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 463 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 464 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 508 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ + E L + I G ID L+ + IA Sbjct: 509 TLRLHNRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLD 568 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 569 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 627 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 628 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 684 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 685 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 722 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ I+ V+ EQR K + Sbjct: 723 GDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNF--------------GL 768 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 769 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 798 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 799 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 832 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M + +++ Sbjct: 833 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 883 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 884 QVHDELVFEVEESALAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 929 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 193/701 (27%), Gaps = 171/701 (24%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSDLLQ 59 T S + A + ++A + L Sbjct: 35 TDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA- 115 L DE + V N ++R + GI++ + T + + + + Sbjct: 85 LLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERW 142 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + GK + A + G Y D + T +L Sbjct: 143 LKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQLHL 187 Query: 176 RLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P E L + I G +ID ++ E + +L++ Sbjct: 188 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 247 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILN 280 ++ + T L+ LF GI + + T + +L + +IL Sbjct: 248 HEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE 306 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L ++ GR+ + + TGR S QN+P Sbjct: 307 YRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-------- 357 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA +V AD + IE R++A ++ + + Sbjct: 358 ----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 401 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AFA G+DI+ T A+ F P++ V+ EQR K + G+ Sbjct: 402 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS- 446 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A + + + + ++ GVL+ Sbjct: 447 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 477 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + RRL D+K Sbjct: 478 YMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIKSSNGA 511 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633 A + +Q + DI+ M +++ VHDE+V Sbjct: 512 RRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 562 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +V + LM +PL E + + Sbjct: 563 FEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 189/701 (26%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 +D ET S + A + ++A + Sbjct: 345 FAVDTETTSLDYMV----------AELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFA 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D + V N ++ + GI + + T + + + Sbjct: 395 LEKLRPILEDAKLKKVGQNLKYDISVLANA-GITLQGVAF-DTMLESYVFNSVASRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + + Y D + Sbjct: 453 GLALKYLGHKNIAFEDIAGKGAKQL---------------TFNQISLETAAPYAAEDADI 497 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I +G ID L+ + E +A++ Sbjct: 498 TLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKID 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ + + L++ F G + T + +L + Sbjct: 558 ELETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPL 616 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 617 PKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 673 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ----------------------IRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLS 711 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 712 QDAGLLNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F + + + + L G L Sbjct: 767 ARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYL-------- 818 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 819 -PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS---------------------- 855 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + ++ T G M + VHDE+V Sbjct: 856 ----------IADWIKTDTQGE----------------IAMI----------MQVHDELV 879 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + + L AE + Sbjct: 880 FEVDADKAETLKQKVCELMAKAAN--LDVELLAEAGIGDNW 918 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 205/705 (29%), Gaps = 168/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54 + ID ET + QA + + A ++E + + Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEENASYIPLAHTDGSTQLVKEEVL 371 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 + L L + + + N ++ + K GI + + T + + + + Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIGY-DTMLESYVLNSGAGRHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK G Y D + T Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVVKAGIYAAEDADIT 474 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +L P+ D E L + + G ID ++ K + ++ K L+ Sbjct: 475 LRLHHKLYPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 ++ V+L G + L+ LF + T +S+L + Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S ++ L + ++ R+ + A TGR S QN+P Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G ++ AD + IE R++A ++ +D Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AFANG DI+ T ++ F T +D VSKEQR K + G Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNF--------------GLIYG 734 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + ++ Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 VL+ + + + + RRL ++ Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629 + + R G +Q + DI+ + M +++ VH Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVH 849 Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + LM + +PL + Sbjct: 850 DELVFEVRKEAVEECRAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 100/708 (14%), Positives = 196/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA + ++A + + Sbjct: 354 FAFDTETTSLNYI----------QAELVGLSFAVAEGEAAYLPVAHDYIDAPEQLDRDHV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N +++ + GI++ + T + + + Sbjct: 404 LASLKTLLEDSNAKKVGQNLKYDKSVLANY-GINLAGIAY-DTMIESYVYNSIATRHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 462 SLADKYLGHKTISFEEIAGKGKKQL---------------TFNQIELEQASAYAAEDADV 506 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L P + E L + ++ +G ID + + Sbjct: 507 TLRLHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARML 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ ++ + + L+ LF+ + + T + +L + Sbjct: 567 ELEAKAHEIAEQPF-NLSSPKQLQEILFVKMELPVIKKTPKGAASTAEDVLQELALNYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + S + L + GR+ + + TGR S QN+P Sbjct: 626 PKIILEYRSLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I G K V D + IE R++A ++ Sbjct: 683 ----------------------VRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ G+DI+ T A+ F+ +D V+ +QR K + Sbjct: 721 QDKGLLTAFSEGKDIHRATAAEVFSVELDDVTSDQRRSAKAINF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + Sbjct: 767 IYGMS------------------------------AFGLGRQLNIPQKEAKKYMTRYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL + + + S RRL ++ Sbjct: 797 YPGVLTYMDETRKVAKDKGY--------------------------VETLSGRRLYLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------ATKNGYDIVL 626 + ++ + R +Q + DI+ + M N N +++ Sbjct: 831 -NARNKMSQMAA--ERAAINAP------MQGTASDIIKKAMINVAGWMETVETNSIRMLM 881 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + V + LM S +PL AE + Sbjct: 882 QVHDELVFEIKEEHVEAYVVKIKELMAAAMS--LDVPLLAEAGVGDNW 927 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 199/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFATEPGMAAYVPVAHDYLDAPNQISRERV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V N F+R + + GI++ + T + + + Sbjct: 404 LELLKPLLEDEKAKKVGQNLKFDRGILQNY-GIELRGIAY-DTMLESYILNSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTVTFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ K E +A Sbjct: 507 TLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLS 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 567 ELEQKAHEIAGEPF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ R+ + A TGR S QN+P Sbjct: 626 PKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVA-ATGRLSSTEPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ +QR K + Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 767 IYGMS------------------------------AFGLSRQLNIPRKESQKYMDLYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + RRL D+ Sbjct: 797 YPGVLEYMERTRAQAKEKGY--------------------------VETLDGRRLYLPDI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 + + +Q + DI+ M K +++ Sbjct: 831 TSSNAARRAGAERAA---------INAPMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V + LM + + +PL E + + Sbjct: 882 VHDELVFEVHHEDLEAVSKKIHELMEGSMT--LDVPLLVEVGSGENW 926 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54 + ID ET + QA + + A +++ + + Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVL 371 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 + L L + + + N ++ + K GI + R+ T + + + + Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLQGIRY-DTMLESYVLNSGAGRHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + G Y D + T Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +L P+ D E L + + G ID ++ K + ++ K L+ Sbjct: 475 LRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 ++ V+L G + L+ LF + T +S+L + Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S ++ L + ++ R+ + A TGR S QN+P Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G ++ AD + IE R++A ++ +D Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AFANG DI+ T ++ F T ++ VSKEQR K + G Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYG 734 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + ++ Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 VL+ + + + + RRL ++ Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629 + + R G +Q + DI+ + M +++ VH Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVH 849 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + LM + +PL + Sbjct: 850 DELVFEVRKEAVEECHAIIHKLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 105/705 (14%), Positives = 192/705 (27%), Gaps = 163/705 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 357 VCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAAQL 406 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 + + + +L DE+ V + ++ +F I + T + + Sbjct: 407 SRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIE-HDTMLESYVLESHRN 464 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK EY Sbjct: 465 HGMDALAERVLHLKTITYEAVCGKGASQIG---------------FDEVPLDRATEYAAE 509 Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G ID D + K + Sbjct: 510 DADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELG 569 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 L+ + KL + + F + ++ + T + +L Sbjct: 570 LRLIDLEAEAHKLAGQPF-NLSSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAE 628 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 629 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA-VTGRLASTDPNLQN 687 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R IA G +V AD + IE R++ Sbjct: 688 IP------------------------VRTEEGRRIREAFIAPEGSVIVSADYSQIELRIM 723 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ ++ ++AF G+D++ T A+ FN +V+ +QR + KV+ L Y Sbjct: 724 AHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMS----- 778 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + A S+ + + E + + G L Sbjct: 779 AFGLASNLGIGRDAAKLYIDRYFARYPGAASYMDETRQRAREQGYVETVFGRRLWL---- 834 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + Sbjct: 835 -----PDINGGNGPRRQAAERAAINAPMQGT----------------------------- 860 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 KL+ VQ +A +V+ VH Sbjct: 861 ---------------------AADLIKLSMLAVQG---------WLDAEAMRSRLVMQVH 890 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P V L LM + +PL AE + Sbjct: 891 DELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + Q EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLQQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 767 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 796 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 797 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 830 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 831 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 881 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + +PL E + + Sbjct: 882 VHDELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 926 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 199/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET A+QA + ++A + A+ Sbjct: 336 FAFDTETTGLD----------AQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPAQLDREAV 385 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D V N+ ++ + + I++ + T + + + Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTATRHDM 444 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + + GK + G Y D + Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQINLDKAGPYAAEDAD 489 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L D E L + I +G +D +L+ + + Sbjct: 490 ITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKM 549 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272 +L+ +L G + L L+ G+ ++ + T +++L + Sbjct: 550 AELELRAYELA-GETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGY 608 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G KL+ AD + IE R++A Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF N D++ T A+ F ++ V+ +QR K + Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINF-------------- 749 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D+ L R +Q + DI+ M ++ Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVKVDNWLSESGLDARVI 864 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + M++ +PL E + Sbjct: 865 LQVHDELVLEVREDLVQQVKDEIRQHMSQAAQ--LDVPLLVEAGVGANW 911 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 100/708 (14%), Positives = 193/708 (27%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + D ET S +A I + A + Sbjct: 360 EFSFDTETTSLD----------VMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQLSLEW 409 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + L L DE + + N ++R + GI + ++ T + + ++ Sbjct: 410 VLNQLKPLLEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKY-DTMLESYVWNSVASRHNM 467 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L++ + GK + + + G Y D + Sbjct: 468 DDLAQTYLDYKTVTFEELAGKGVKQL---------------TFNQLKIEDAGHYAAEDAD 512 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + P + E L + I G +D L+ + + + Sbjct: 513 ITLRLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERM 572 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 +L+ +L + L + LF + + T + +L + Sbjct: 573 VQLERKAYELAGQEF-NLSSPKQLGVILFEQLQLPVIKKTPTGTPSTAEEVLQELALDYP 631 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +I+ A + + L ++ GR+ A TGR S QN+P Sbjct: 632 LPKVIMEYRAMAKLKSTYTDKLPLMINPATGRIHTNYHQAVA-ATGRLSSQDPNLQNIP- 689 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G KLV AD + IE R++A + Sbjct: 690 -----------------------IKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHL 726 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + AF G D++ T A+ F +D V+ E R K + Sbjct: 727 SSDSGLLSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINF--------------G 772 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 773 LIYGMS------------------------------AFGLAKQLHVGRNEAQQYIDRYFE 802 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + ++ + RRL D Sbjct: 803 RYPGVQRYMNNIRAQAHEQGY--------------------------VETLFGRRLYLPD 836 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + R +Q + DI+ M +++ Sbjct: 837 INAKNKNF---QLAAERTAINAP------MQGTAADIIKTAMIAVDNWLVEAGLDAKLIM 887 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ V T + + M+ +PL + + Sbjct: 888 QVHDELVLEVAESCLDEVCTGVVARMSAAAR--LNVPLIVDAGVGNNW 933 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 190/705 (26%), Gaps = 163/705 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 357 VCIDTETTSIDPML----------AQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQL 406 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 + + + +L DE+ V + ++ +F I + T + + Sbjct: 407 SRDTVLARMKLWLEDESRKKVGQHLKYDAHVFANH-DIALRGIE-HDTMLESYVLESHRN 464 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK Y Sbjct: 465 HGMDALAERVLHLKTITYEAVCGKGASQIG---------------FDEVPLDRATAYAAE 509 Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G ID D + K + Sbjct: 510 DADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELG 569 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 +L+ + KL + + F + ++ + T + +L Sbjct: 570 LRLIELEAEAHKLAGQPF-NLGSPKQIGDIFFNQMKLPVIKKTASGAPSTDEEVLQKLAE 628 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 629 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATA-VTGRLASTDPNLQN 687 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R IA G +V AD + IE R++ Sbjct: 688 IP------------------------VRTEEGRRIREAFIAPEGSVIVSADYSQIELRIM 723 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ ++ ++AF G+D++ T A+ FN +V+ +QR + KV+ L Y Sbjct: 724 AHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMS----- 778 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + A ++ + E + + G L Sbjct: 779 AFGLASNLGIGRDAAKLYIDRYFARYPGAANYMEETRQSAREHGYVETVFGRRLWL---- 834 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + Sbjct: 835 -----PDINGGNGPRRQAAERAAINAPMQGT----------------------------- 860 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 KL+ VQ A +V+ VH Sbjct: 861 ---------------------AADLIKLSMLAVQG---------WLEAEAMRSRLVMQVH 890 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P V L LM + +PL AE + Sbjct: 891 DELVLEVPQDELAVVRERLPELMCSVAT--LRVPLVAEVGVGANW 933 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 355 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 405 LEQLKPILEDDAQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 462 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 463 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 507 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ + E L + I G +D L+ + IA Sbjct: 508 TLRLHNRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDDMLLGAQSQEIAVRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ S T + +L + Sbjct: 568 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGSPSTNEEVLQELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 627 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 684 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ I+ V+ EQR K + Sbjct: 722 GDKALLEAFQQGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNF--------------GL 767 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 768 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 797 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 798 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 831 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M + +++ Sbjct: 832 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 882 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 883 QVHDELVFEVEESSLAEIESKVQELMESAAE--LEVPLVAEAGHGDNW 928 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 196/709 (27%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDREWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+T V N ++ + + GI++ + T + + + Sbjct: 404 LAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 462 SLALRFLQHSCISFEQLAGKGKNQL---------------TFNQIDLNEAAVYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + + G ID + + IA Sbjct: 507 TLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLG 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + L+ LF G+ + T + +L + Sbjct: 567 ELEQKAYEIAGQPF-NMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ I++VS EQR K + Sbjct: 721 GDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL Sbjct: 797 YPGVMQYMEDTRSNAAQHGYVETIF--------------------------GRRLHLP-- 828 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIV 625 + + N + R +Q + DI+ + M ++ Sbjct: 829 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLL 880 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM +PL AE + Sbjct: 881 MQVHDELVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 101/710 (14%), Positives = 199/710 (28%), Gaps = 171/710 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET S L A + ++A + Sbjct: 356 KCFAFDTETDSLDTL----------SAHLIGLSFAIEKGKGAYLPLGHNYLDAPQQLPLD 405 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----P 106 + + + L D+ + + N F+ + I++ + + T + + Sbjct: 406 EVLAAIKPILVDKNIQKIGQNLKFDYGVMANY-DIELKNMAF-DTMLESYVLNSVAGLGR 463 Query: 107 SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + LN + GK + + Y Sbjct: 464 HDMDSLAQRHLNHKTITFEEIAGKGKNQL---------------TFNQIPLEQASTYAAE 508 Query: 166 DVEATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P + E L + + G ID + + K IA Sbjct: 509 DADVTLLLHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIA 568 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270 +++++ + + + L+ LF + + T + +L Sbjct: 569 SRLMEIEKEAYAIAEQEF-NLASPKQLQAILFEKLQLPVVKKTPSGAPSTNEEVLEELAF 627 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + +IL + S + L + + T + TGR S QN+ Sbjct: 628 SHELPKIILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTATGRLSSRDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G K+V AD + IE R++A Sbjct: 688 P------------------------VRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ + + AFA G+DI+ T A+ F + V+ EQR K + Sbjct: 724 HLSQDKGLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINF------------- 770 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ + + + + + Sbjct: 771 -GLIYGMS------------------------------AFGLSRQLGITRGQAQHYMDRY 799 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 ++ GVL + + A + + RRL Sbjct: 800 FERYPGVLSYMERTRKQAAEQGY--------------------------VETLAGRRLYL 833 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624 D+ + MR + + +Q + DI+ + M K + Sbjct: 834 PDIN---------SRNAMRRKASEREAINAPMQGTAADIIKKAMIALDKWIESVKPDLYM 884 Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE+V E ++ + LM ++ +PLK + + Sbjct: 885 LMQVHDELVFEVKESAVDRSQQKIRQLMEQSMQ--LTVPLKVDVGIGDNW 932 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 101/709 (14%), Positives = 196/709 (27%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 380 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWV 429 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+T V N ++ + + GI++ + T + + + Sbjct: 430 LAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 487 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 488 SLALRFLQHSCISFEQLAGKGKNQL---------------TFNQIDLNEAAVYAAEDADV 532 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + + G ID + + IA Sbjct: 533 TLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLG 592 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + L+ LF G+ + T + +L + Sbjct: 593 ELEQKAYEIAGQPF-NMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPL 651 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 652 PSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 708 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 709 ----------------------IRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLS 746 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ I++VS EQR K + Sbjct: 747 GDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNF--------------GL 792 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 793 IYGMS------------------------------AFGLAKQLGIPRGEAQTYMDKYFER 822 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + RRL Sbjct: 823 YPGVMQYMEDTRSNASQHGYVETIF--------------------------GRRLHLP-- 854 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIV 625 + + N + R +Q + DI+ + M ++ Sbjct: 855 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLL 906 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM +PL AE + Sbjct: 907 MQVHDELVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 953 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 201/705 (28%), Gaps = 161/705 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 S D ET S ++A + ++A + + Sbjct: 350 SIFAFDTETDSLD----------TQEARLVGMSFAIEPGYAAYLPLGHDYLDAPVQLPLN 399 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----P 106 + + + L ++ ++ + N ++ + I++ + T + + Sbjct: 400 DVLAAMKPILENDKILKIGQNLKYDAEVLLNY-DIELKGIAF-DTMLESYVLNSVAGMGR 457 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + LN + GK + A + Y Sbjct: 458 HDMDSLAERHLNHKTVSFEEIAGKGKKQL---------------TFNQIALEQAANYAAE 502 Query: 166 DVEATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P + E L + + +G ID ++ + I Sbjct: 503 DADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKGVLIDAAVLAAQSKEIT 562 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270 +L+++ +L + T L+ LF + + T + +L + Sbjct: 563 ARLAELEKEAFELAGEEF-NLASTKQLQTILFEKLQLPVVKKTPSGAPSTNEEVLEELAL 621 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L + + + L +S R+ + + TGR S QN Sbjct: 622 NHALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRVHTSYHQAV-TATGRLSSRDPNLQN 680 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R IA G K+V AD + IE R++ Sbjct: 681 IP------------------------VRTEEGRRIRQAFIARKGYKVVAADYSQIELRIM 716 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ + + AFA G+DI+ T A+ F P+D+V+ +QR K + L Y Sbjct: 717 AHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMS----- 771 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + FE + + + Q E + L G L Sbjct: 772 AFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLA--- 828 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ + M + P Sbjct: 829 ------DIKSSNGMRRKAAEREAINAPMQGTA--ADIIKKAMIAVDAWLQTEKPH----- 875 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 D+L + VH Sbjct: 876 -------------------------------------ADML---------------MQVH 883 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E ++ SV + LM ++ +PLK + + Sbjct: 884 DELVFEVKESELDSVTTKIRELMEQSMQ--LDVPLKVDVGIGDNW 926 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 98/703 (13%), Positives = 194/703 (27%), Gaps = 161/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + +D ET + + A + ++A ++ Sbjct: 354 KLIAVDTETDNLDYM----------SANLVGISFALENGEAAYLPLRHNYIGAPQQIDFD 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 S L L + + V N ++ +F + GI++ + T +L+ ++ Sbjct: 404 TALSRLKPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTY-DTMLLSYVLDSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + Y D + Sbjct: 462 DDLAKRYLGHQTISFEEIAGKGKGQL---------------TFDQIPLEHATTYAAEDAD 506 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID + +L IA+ Sbjct: 507 ITMKLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ +L + T L+ LF G+ + T + +L Sbjct: 567 TALEQQAYELAGQTF-NLASTKQLQEILFDKLGLPVLKKTPKGAPSTNEEVLEELAYDHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L++ S + L + ++ GR+ + + TGR S QN+P Sbjct: 626 LPKLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R I G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AF+ G+DI+ +T A+ F P+++V+ EQR K + L Y + Sbjct: 721 SKDQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMS-----SFG 775 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + F+ + ++ +++ L L Sbjct: 776 LSRQLGIPRNDAQKYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYL------- 828 Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + +A + + + + Sbjct: 829 --PDINSSNAIRRKAAERVAINAPMQGTAADIIKRAMIDLDKQ----------------- 869 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + N DI M + VHDE Sbjct: 870 -------------------------IVGNP------DI---QMI----------MQVHDE 885 Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E + M K +PL + + + Sbjct: 886 LVFEVRSEKVEEFSQLIKQTMEKAAQLV--VPLIVDVGVGQNW 926 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 202/703 (28%), Gaps = 161/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESIAGKGKNQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID + + IA Sbjct: 507 VTMKLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQL 273 L+E +L + T L+ LF G+ + + T + +L + Sbjct: 567 TALEEQAYELAGQPF-NLASTKQLQEILFDKLGLPILQKTPKGAPSTNEEVLEELAYSHE 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y Sbjct: 721 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMS-----AFG 775 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 LD+ + F+ + + ++++ + L G L Sbjct: 776 LSRQLDISRPDAKKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYL------- 828 Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + +G + +A + + + Y Sbjct: 829 --PDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVI--------------YH 872 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 D + M + VHDE Sbjct: 873 DPDIE-------------------------------------MI----------MQVHDE 885 Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E + M +PL E + + Sbjct: 886 LVFEVRSEKVEFFREQIKQQMEDASELV--VPLIVEVGVGQNW 926 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 190/708 (26%), Gaps = 170/708 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + D ET S P+ QA I +++ + Sbjct: 351 KVVSFDTETTSLDPM----------QARIVGVSFSVEAGHAAYLPLEHHYAGAPQQLPLE 400 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 A + L +L D + N ++ + GI + + + + ++ Sbjct: 401 AALAKLKPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIA-DDSMLASYVLESHQRHNM 458 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + Y D + Sbjct: 459 DDLARRHLGENTVSYEEICGKGAKQIG---------------FSEVDVDIAANYAAEDAD 503 Query: 169 ATRELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + D E + + + G ID D + + + + Sbjct: 504 ITLRLNQFFAGQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLE 563 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL------VDMSEGTLKSILSHSNITQL 273 L++ +L + L+ LF I T +S+L + Sbjct: 564 LEQRAYELAGQPF-NLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHP 622 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 IL + + L + GR+ T A TGR + QN+P Sbjct: 623 LPKCILEYRGLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVA-ITGRLASNDPNLQNIP- 680 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 VR IA G ++V AD + IE R++A + Sbjct: 681 -----------------------VRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHL 717 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ +KAFA+GEDI+ T A+ F + V+ +QR K + L Sbjct: 718 SDDEGMLKAFASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLI------------ 765 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + +A + + Sbjct: 766 --YGMSAFGLAAQLDIE------------------------------RSAAQQYIDRYFM 793 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + E RRL D Sbjct: 794 RYPGVAEYMQATREKAREQGYVETVF--------------------------GRRLYLPD 827 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 +K R +Q + D++ M +++ Sbjct: 828 IKLSNPGRRAGA---ERAAINAP------MQGTAADLIKLAMIAVQDWLERDGLQSKLIM 878 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P V L +M +PL AE + Sbjct: 879 QVHDELVLEVPQAELEQVKRRLPEIMAGAAE--LKVPLLAEVGAGDSW 924 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 196/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET + A + ++A ++ + Sbjct: 345 VAFDTETDGLDYMT----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWV 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N F+ + + I++ ++ T + + + Sbjct: 395 LAQLKPLLEDPAQNKVGQNLKFDMSILARY-DINMQGIKY-DTMLESYVFNSVVGRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 453 SLALRYLEHKNISFEEVAGKGKKQL---------------TFNQIDLDVAGPYAAEDADI 497 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L + E L + I G ID L+ IA Sbjct: 498 TLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLD 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ ++ + + L+ LF G+ + + T + +L + Sbjct: 558 ELETKAYEIAEQEF-NLSSPKQLQAILFEKMGLPILKKTPSGAPSTNEEVLQELALDYPL 616 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L + V+ GR+ + + TGR S QN+P Sbjct: 617 PKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 673 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G K++ D + IE R++A ++ Sbjct: 674 ----------------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLS 711 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ PI+ V+ EQR K + Sbjct: 712 GDKALLEAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINF--------------GL 757 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 758 IYGMS------------------------------AFGLAKQLGMGRNEAQDYMNVYFER 787 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ + + + RRL D+ Sbjct: 788 YPGVLEYMESTRVHASEQGY--------------------------VETLFGRRLYLPDI 821 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 K R +Q + DI+ M + +++ Sbjct: 822 KSRN---GIRRKAAERAAINAP------MQGTAADIIKRAMVLVDEWVEQQETGRVRLLM 872 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ +V + LM +PL A+ + Sbjct: 873 QVHDELVFEVQESELDAVSADVRRLMELAAE--LDVPLIADAGAGNNW 918 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 197/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 + ID ET S + A + ++A + Sbjct: 340 IAIDTETTSLNYM----------DAKLVGISFAIEAGKAAYLPLGHDYLDAPEQLDQAEA 389 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L + + V N ++ +F +GI + + T + + ++ Sbjct: 390 LAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMD 447 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + Y D + Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQIDLETAAPYAAEDADI 492 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G ID ++ + +A+ Sbjct: 493 TLRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTID 552 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L++ ++ + L++ F G + + T + +L + Sbjct: 553 ELEQKAFEIAGEKF-NLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 612 PKIILQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA GKK++ AD + IE R++A ++ Sbjct: 669 ----------------------IRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLS 706 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F+ +V+ EQR K + L Y Sbjct: 707 QDEGLLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMS-----AFGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + + + + + L G L Sbjct: 762 AKQLDIPRPEAQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYL-------- 813 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 814 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 849 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + T+G D++ + VHDE+V Sbjct: 850 ---------NIAHWIATETHGEI-----------DMI---------------MQVHDELV 874 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + +C LM S + L AE + Sbjct: 875 FEVDSDRAEEMQAKVCQLMADAVS--LDVELLAEAGIGDNW 913 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 200/709 (28%), Gaps = 165/709 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET + + + + T + Sbjct: 350 YVAIDTETTGLDAMV----------VDLVGVSLCVEPGTACYIPLTHKQGGDDLFGGEGL 399 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D V+ + N ++ + + GID+ T +++ Sbjct: 400 AEGQMPLEQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY-GIDVAP--IDDTMLMSYAL 456 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ K + GK+ I D+ PY A+ ++ W Sbjct: 457 HAGEHNHGMDILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADAVPYAAEDADITLRLW 516 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q F + +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 517 QHFKPELHQRQVTV--VYETL------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQK 568 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 L+++I L + L LF + + T IL Sbjct: 569 MAALEDEIHALAGQPF-NVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDLATEH 627 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L+ S + L + ++ D GR+ + GA+ TGR + QN+P Sbjct: 628 ALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGAN-TGRMASSDPNLQNIP 686 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R + G L+ D + IE R+LA Sbjct: 687 ------------------------VRSEEGRRIREAFVPEQGNVLLSLDYSQIELRILAH 722 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +AG D AFA G+DI+ T ++ F+ P+++++ + R K + Sbjct: 723 VAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAIN--------------F 768 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 769 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 798 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ E + R++ Sbjct: 799 ERFPGIRAYMDRTVEFAKEHGY--------------------------VQTLFGRKIHTP 832 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + + R +Q + D++ M ++L Sbjct: 833 ----EIAAKGPRAGFAKRAAINAP------IQGTAADVIRRAMVKMPPAIAHLPARMLLQ 882 Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ + T +M P+ + L + + Sbjct: 883 VHDELLFEVPEAAVEETIETARRVMENAADPALHLDVKLSVDAGRGNNW 931 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 107/720 (14%), Positives = 199/720 (27%), Gaps = 186/720 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----------QSA 52 + +D ET + A + + D A Sbjct: 345 VAVDTETTGLNEMR----------ADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEA 394 Query: 53 MPSD-----------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 ++ L L D V+ + N ++ + + GI + T +L+ Sbjct: 395 KLAEGQLDFETALGMLKPVLEDPAVLKIGQNMKYDAKILARN-GITVAP--IDDTMLLSY 451 Query: 102 TNGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + L+ + K + GK+ I Sbjct: 452 ALHAGLHGHGMDALSERYLDHTPIPIKTLLGTGKSAITFDFVPI---------------- 495 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDL 205 + +Y D E T L++RL P ER + + + RG ++D D Sbjct: 496 -EEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDT 554 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261 + ++ AQ+ L+ +I +L G + L LF G + + T Sbjct: 555 LSRMSNAFAQKMAGLEAEIHELA-GESFNVGSPAQLGEILFEKMGFEGGKTGKSGKYSTP 613 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L +L+ S + L + ++ GR+ + GA+ TGR Sbjct: 614 ADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGAN-TGRL 672 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P +R +A G LV D Sbjct: 673 ASTDPNLQNIP------------------------VRSEEGRRIREAFVAEPGHVLVSLD 708 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA IAG D AF +G DI+ T ++ F+ P+D+++ E R K + Sbjct: 709 YSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINF--- 765 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ A ++ Sbjct: 766 -----------GVIYGISGF------------------------------GLARNLRIPR 784 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + G+ D + Sbjct: 785 AEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKY--------------------------V 818 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616 R++ + R +Q + DI+ M Sbjct: 819 QTLFGRKIHTP----EIGAKGPQAGFAKRAAINAP------IQGTAADIIRRAMVRMPAA 868 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT--KNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + V + +M P +PL + + + + Sbjct: 869 IADLPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSW 928 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 202/707 (28%), Gaps = 169/707 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 359 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 408 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 409 TALAAIKLILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 466 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + Q EY D + Sbjct: 467 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLQQATEYAAEDAD 511 Query: 169 ATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 512 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRL 571 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ L + T L+ LF G+ + T + +L + + Sbjct: 572 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLEELSYSHE 630 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+S GR+ + + TGR S QN+P Sbjct: 631 LPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 688 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 689 -----------------------IRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHL 725 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 726 SGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF--------------G 771 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + + Sbjct: 772 LIYGMS------------------------------AFGLSRQLGISRPDAQKYMDLYFQ 801 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V Q D+ + RRL D Sbjct: 802 RYPSVQQFMTDIRAKAKAQGY--------------------------VETLFGRRLYLPD 835 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLT 627 + + R +Q + DI+ M + ++++ Sbjct: 836 INSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKLDEVIRHDPNIEMIMQ 886 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + +PL E + + Sbjct: 887 VHDELVFEVRSEKVAFFREQIKQHIEAAAELV--VPLIVEVGVGQNW 931 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S + A + ++A + T Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQINKTVAL 394 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + + T + + + Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L+E + + L++ F G + + T + +L + Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 672 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G+K++ AD + IE R++A ++ Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + + L G L + R Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + +G + + A + Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Q ++ T G M + VHDE+V Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C+LM + + L AE + Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 196/709 (27%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET A++A + ++A A+ Sbjct: 336 FAFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAV 385 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D V N+ ++ + + I + + T + + + Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIAMRGVAY-DTMLESYVLNSTATRHDM 444 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + + GK + G Y D + Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQIDLDKAGPYAAEDAD 489 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L D E L + I +G +D L+ + ++ Sbjct: 490 ITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGEKM 549 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 +L+ +L + L L+ G+ ++ + T +++L Sbjct: 550 AELERRAYELAGEEF-NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELAELGY 608 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G KL+ AD + IE R++A Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF N D++ T A+ F ++ V+ +QR K + Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALENVTVDQRRKAKAINF-------------- 749 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 780 ARYPGVLAYMERTRTQAAEQG--------------------------FVETLFGRRLYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D+ L R +Q + DI+ M N ++ Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVI 864 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + M+K +PL E + Sbjct: 865 LQVHDELVLEVREDLVEQVKDEIRQHMSKAAQ--LDVPLLVEAGIGANW 911 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 196/709 (27%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+T V N ++ + + GI++ + T + + + Sbjct: 404 LAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 462 SLALRFLQHSCISFEQLAGKGKNQL---------------TFNQIDLNEAAVYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + + G ID + + IA Sbjct: 507 TLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLG 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + L+ LF G+ + T + +L + Sbjct: 567 ELEQKAYEIAGQPF-NMNSPKQLQTILFEQMGLPVIKKTPSGTPSTAEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ I++VS EQR K + Sbjct: 721 GDQALLDAFQQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL Sbjct: 797 YPGVMQYMEDTRSNAAQHGYVETIF--------------------------GRRLHLP-- 828 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIV 625 + + N + R +Q + DI+ + M ++ Sbjct: 829 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLL 880 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM +PL AE + Sbjct: 881 MQVHDELVFEVEESCLTEIESKVQQLMESAAQ--LNVPLVAEAGHGDNW 927 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S + A + ++A + T Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + + T + + + Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L+E + + L++ F G + + T + +L + Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 672 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G+K++ AD + IE R++A ++ Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + + L G L + R Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + +G + + A + Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Q ++ T G M + VHDE+V Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C+LM + + L AE + Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D+ET L A I ++A A+ Sbjct: 351 FAFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N ++R + K I++ ++ T + + + Sbjct: 401 LAQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMD 458 Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + Y D + Sbjct: 459 SLSARWLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 503 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + + G ID ++ + + + Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLA 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + T L++ LF GI + T + +L+ + Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G ++V AD + IE R++A ++ Sbjct: 680 ----------------------VRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ GEDI+ T ++ F P+ KV+ EQR K + Sbjct: 718 QDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ ++ + A + RRL D+ Sbjct: 794 YPGVLRYMENTRQLAASNGY--------------------------VETLDGRRLWLPDI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K + R +Q + DI+ M + +++ Sbjct: 828 KSSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDDWLQKQTDDAVRMIM 878 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + +LM + A +PL E + Sbjct: 879 QVHDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924 >gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 110/700 (15%), Positives = 202/700 (28%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + ID ET S +P+ A I ++A + A+ Sbjct: 340 VAIDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAV 389 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L D + + N ++R +F GI + R T + + P SL++ Sbjct: 390 LARLKPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVR-HDTMLESYVLEAHKPHSLES 447 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + EY D E Sbjct: 448 LAERHLGRKGLSYEDLCGKGVNQ---------------IPFAQVDVARATEYSAEDSEMA 492 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + + L P + E + + I G +D + + +A+ Sbjct: 493 LHVHQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVA 552 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----MSEGTLKSILSHSNITQLAK 275 L++++ + + + + LF G+ + + T + +L+ Sbjct: 553 LEQEVYAIAEQPF-NLGSPKQIGEILFGKLGLPVKKRTASGAPSTDEDVLTELAADYPLP 611 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL + + + L V+ GR+ A TGR + QN+P Sbjct: 612 ARILEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIP--- 667 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR +A G ++ AD + IE R++A I+ Sbjct: 668 ---------------------IRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISE 706 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ ++AF+ G D++ T A+ F P+ +V+ EQR KV+ L Y G Sbjct: 707 DEGLLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMG-----AYGLA 761 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L ++Q + F + + + + + E + + G L Sbjct: 762 ANLGIEQKAAKDYIDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWL--------- 812 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + G +L V+ Sbjct: 813 PEINSGNGPRRSGAERQAINAPMQGTAADLI---------------------KLAMIAVQ 851 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + AT +V+ VHDE+V Sbjct: 852 KELDASGRATR--------------------------------------MVMQVHDELVL 873 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ + LM A +PL AE + Sbjct: 874 EVPEAELDWAKDAIPRLMAGVA--ALKVPLLAEVGVGANW 911 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET S L A I ++A + Sbjct: 352 FAFDLETDSLDTL----------SANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N F+R + K+ I++ R+ T + + + Sbjct: 402 LARLKPLLEDPQSQKVGQNLKFDRGVLKRY-DIELLGIRF-DTMLESYALNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A + Y D + Sbjct: 460 TLASRWLQHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + Sbjct: 505 TLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + L+ LF GI + T + +L+ + Sbjct: 565 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA+ +DI+ T A+ F +DKVS EQR K + Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GL 764 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 765 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 794 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVLQ + E A + RRL D+ Sbjct: 795 YPGVLQYMESTRELAAQKGY--------------------------VSTLDGRRLYLPDI 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ M +++ Sbjct: 829 NASNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIM 879 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + +LM + +PL+ + + Sbjct: 880 QVHDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 191/708 (26%), Gaps = 170/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET A+QA I ++A + A+ Sbjct: 343 FAFDTETTGLD----------AQQASIVGLSFAVEPNEAAYVPLAHDYEGAPAQLDREAV 392 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D + N+ ++ + + T + + + Sbjct: 393 LLALKPLLEDPAKGKIGQNAKYDINILANGSPAILMRGVAYDTMLESYVLDSTATRHDMD 452 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + + GK + + G Y D + Sbjct: 453 SLAQKYLDHTTIGFEDIAGKGAKQL---------------TFNQIPLEKAGPYAAEDADV 497 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L D E L + I +G +D L+ + + Sbjct: 498 TLRLHHALQARLANTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLGVQSGELGAKLV 557 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-QL 273 +L+ + L + L L+ G+ ++ + T +++L Sbjct: 558 ELEREAYALAGEEF-NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDDLAEQGYP 616 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 617 LPKVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP- 674 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +AS G KL+ AD + IE R++A + Sbjct: 675 -----------------------VRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHL 711 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A ++ + AF N D++ T A+ F + V+ +QR K + Sbjct: 712 AKDEGLLHAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAINF--------------G 757 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + A Sbjct: 758 LIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYFA 787 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + A + RRL D Sbjct: 788 RYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLPD 821 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVL 626 + L R +Q + DI+ M K ++L Sbjct: 822 INAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVAVDNWLTDSKLDARVIL 872 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + M+ +PL E + Sbjct: 873 QVHDELVLEVREDLVEQVKDEIRGYMSGAAE--LDVPLLVEVGVGSNW 918 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 207/705 (29%), Gaps = 168/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54 + ID ET + QA + + A +++ + + Sbjct: 322 QFCIDTETTNLD----------VMQAELVGISLAVEEDNASYIPLAHTDGSTQLVKEEVL 371 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 + L L + + + N ++ + K GI + R+ T + + + + Sbjct: 372 TALKPILENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + G Y D + T Sbjct: 430 LALKYLGYKTISYEDVAGKGAKQL---------------RFDQIPVEKAGIYAAEDADIT 474 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +L P+ D E L + + G ID ++ K + ++ K L+ Sbjct: 475 LRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLE 534 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 ++ V+L G + L+ LF + T +S+L + Sbjct: 535 QEAVQLA-GKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQPSTAESVLQELAFDYRLPAV 593 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S ++ L + ++ R+ + A TGR S QN+P Sbjct: 594 ILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVA-ATGRLSSSDPNLQNIP----- 647 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G ++ AD + IE R++A ++ +D Sbjct: 648 -------------------IRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDD 688 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AFANG DI+ T ++ F T ++ VSKEQR K + G Sbjct: 689 NLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNF--------------GLIYG 734 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + ++ Sbjct: 735 MS------------------------------AFGLAKQIGVERQDAQHYIDTYFRRYPK 764 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 VL+ + + + + RRL ++ Sbjct: 765 VLEYMERTRKQAHQLGY--------------------------VETLFGRRLYLPEI-NS 797 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVH 629 + + R G +Q + DI+ + M +++ VH Sbjct: 798 RNLMRQ--KAAERTAINGP------MQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVH 849 Query: 630 DEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + LM + +PL + Sbjct: 850 DELVFEVRKEAVEECHAIIHNLMEQTVK--LSVPLVVSIGTGSNW 892 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S + A + ++A + T Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + + T + + + Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 LRLHQHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L+E + + L++ F G + + T + +L + Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 672 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G+K++ AD + IE R++A ++ Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + + L G L + R Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + +G + + A + Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Q ++ T G M + VHDE+V Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C+LM + + L AE + Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 100/717 (13%), Positives = 194/717 (27%), Gaps = 178/717 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51 D ET A QA + ++A T + Sbjct: 344 KLFAFDTETT----------GIDAHQAQLVGVSFAVQPHEAAYIPLTHAYIGVPDQLDRD 393 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNG 104 + L L D T + + ++ F+ + GI + + T + + Sbjct: 394 TVLRALKPLLEDPTKLKIGQHAKFDMNILANCAIDGDPAQGITVQGIAF-DTMLESYVLN 452 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + L++ + GK A + G Sbjct: 453 ATATRHDMDSLAKKYLDYDTVSFQDIAGKGAKQL---------------TFDQIALEQAG 497 Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L D E L + I +G +D L+ Sbjct: 498 PYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPVLARIERQGALVDAQLLGVQ 557 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL 265 + + +L+ ++ G + L L+ G+ T + +L Sbjct: 558 SIELGNKMVELERQAFEIA-GEAFNLGSPKQLGAILYEKLGMPVLKKTGKGQASTAEDVL 616 Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +++ + S + L E ++ GR+ + A TGR S Sbjct: 617 AKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSS 675 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A G KL+ AD + Sbjct: 676 DPNLQNIP------------------------VRTAEGRRIRQAFVAPKGYKLLAADYSQ 711 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ ++ + AF + D++ T A+ F + +V+ +QR K + Sbjct: 712 IELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINF------ 765 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 766 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 787 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A++ GV + + + + Sbjct: 788 KAYIDVYFARYPGVREYMERTRAQASDQGY--------------------------VETF 821 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL D+ + A R +Q + DI+ + M Sbjct: 822 FGRRLYLPDIHSNKPQERAAA---ERTAINAP------MQGTAADIIKKAMVRVDNWLTA 872 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + M+ +PL E + Sbjct: 873 SGLDAKVILQVHDELVLEVREDLVAEVSEKVREHMSAAAQ--LDVPLLVEVGVGDNW 927 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 187/700 (26%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A + ++A + Sbjct: 346 AVDTETTSLDYMV----------AELVGLSFAVEAGKAAYLPLAHDYVGAPQQLDKQTAL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + T + + + Sbjct: 396 EKLRPILEDAKLKKVGQNLKYDISVLANA-GIQLKGV-VFDTMLESYVFNSVASRHDMDG 453 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 454 LALKYLGHKNIAFEDIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 498 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ + Sbjct: 499 LRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDE 558 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L+ + + L++ F G + T + +L + Sbjct: 559 LETKAYDIAGEKF-NLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVLVELALDFPLP 617 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 618 KVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 673 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G+K++ AD + IE R++A ++ Sbjct: 674 ---------------------IRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQ 712 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D V+ EQR K + L Y Sbjct: 713 DAGLLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMS-----AFGLA 767 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + E L G L Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYL--------- 818 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + ++ Sbjct: 819 PEIRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIS----------------------- 855 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + ++ T G M + VHDE+V Sbjct: 856 ---------IADWIKTDTQGE----------------ITMI----------MQVHDELVF 880 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C LM K + + L AE + Sbjct: 881 EVDADKAETLKLKVCELMAKAAN--LDVELLAEAGIGDNW 918 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 118/705 (16%), Positives = 193/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMP 54 D ET S P+ A I + A + + + Sbjct: 341 SFDTETTSLDPMV----------AQIVGISIAVEAGKAAYIPVAHHGPDAPVQLPRDEVL 390 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L V + ++ + GI + T + + P + N Sbjct: 391 AKLKPWLESRDKKKVGQHLKYDEQVLANY-GITMDGIE-HDTLLQSYVLESHRPHDMDNL 448 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 449 ALRHLGLKTIKYEDVAGKGASQIG---------------FDEVALDKASEYAAEDADITL 493 Query: 172 ELFKRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P E L + + + G ID++ + IA +L Sbjct: 494 RLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEIATRLVEL 553 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + L G + + F + + T + +L Sbjct: 554 ERQAYDLAGGEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 612 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL S + L V+ S GR+ A TGR + QN+P Sbjct: 613 TILEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 667 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G KLV AD + IE R++A I+G+ Sbjct: 668 --------------------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGD 707 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AF GEDI+ T ++ F+ +VS +QR I KV+ Sbjct: 708 EALLRAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINF--------------GLIY 753 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ + N+ + A +L + A++ Sbjct: 754 GMSSFGLASNL------------------------------GITRDAAKLYIDRYFARYP 783 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV ++ RRL ++ G Sbjct: 784 GVAAYMENTRTSAKMKGYVETVF--------------------------GRRLWLPEING 817 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629 A R +Q + D++ M K +++ VH Sbjct: 818 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQKWIEESGIRTRMIMQVH 868 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L LM +PL AE + Sbjct: 869 DELVLEVPDDELSDVRKRLPELMCGVAQ--LKVPLVAEVGAGANW 911 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 99/697 (14%), Positives = 193/697 (27%), Gaps = 149/697 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 D ET S + +A + ++ + Sbjct: 331 TFAFDTETNSLDYM----------EAELVGLSFCAEPGVACYVPVAHDYPGAPDQLSRDY 380 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + L L D V + ++ + GI + T + + + Sbjct: 381 VLNQLKDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFA-GDTMLESYVLDSVGGRHDM 438 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + WQL+ EY + Sbjct: 439 DSLAERYLGRRTISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADITWQLY-EYLTNQLT 497 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 AT L +D E L + Q+I G + +++ + +I +L+ + L Sbjct: 498 ATESLHTV---YTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIELEAEAHDLA 554 Query: 229 DGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + T L LF + + + T + +L + ++L Sbjct: 555 GRPF-NLGSTKQLGEILFDELKLPIIKKTPKGAPSTGEEVLVELALDYPLPKVLLEYRGL 613 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L ++ GR+ + + TGR S QN+P Sbjct: 614 AKLKSTYTDKLPTLINPRTGRIHTSYHQAV-TATGRLSSSDPNLQNIP------------ 660 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + +R IA +V AD + IE R++A ++G+ + AF Sbjct: 661 ------------IRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLTAFN 708 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D++ T A+ F +D+V+ +QR K + G+ Sbjct: 709 EGLDVHAATAAEVFGVALDEVTSDQRRSAKAINF--------------GLIYGMS----- 749 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + + + + ++ GVL Sbjct: 750 -------------------------AFGLAKQLHIGRAESQAYIDTYFQRYPGVLDYMDR 784 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +G RRL ++ Sbjct: 785 TRQGAHERGYVETIF--------------------------GRRLYLPEIN--------- 809 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637 MR + +Q + DI+ + M + +++ VHDE+V E P Sbjct: 810 ARNKMRVQAAERTAINAPMQGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVP 869 Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + + M A +PL E + Sbjct: 870 KHELDALRAGVITAMESAAQLA--VPLLVEVGLGDNW 904 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 202/706 (28%), Gaps = 166/706 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + A+ Sbjct: 352 IAFDSETTSID----------AQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQLDRDAV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D V ++ ++ + I + + T + + + Sbjct: 402 LKALKPILEDPAKAKVGQHAKYDINVLANASTPIAVQGVAF-DTMLESYVLDSTATRHDM 460 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L S + G+ A + G Y D + Sbjct: 461 DSLALKYLGHSTIRFEDIAGRGAKQL---------------TFDQIALEQAGPYAAEDAD 505 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D L+ + + ++ Sbjct: 506 VTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKL 565 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 +L+ ++ + L + L+ G ++ + T +++L+ Sbjct: 566 VELERKAFEIAGEEF-NLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDF 624 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +++ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 625 ELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 683 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G K++ AD + IE R++A Sbjct: 684 ------------------------IRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAH 719 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF + D++ T A+ F +++V+ +QR K + L Y Sbjct: 720 LAKDEGLLDAFRHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMS-----AF 774 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 +D+++ F + S+ + Q E + + G L Sbjct: 775 GLAKQIDVERKEAQAYIDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYL------ 828 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + +G I P Sbjct: 829 ---PEIHAQNQAMRKGAERAA---------------------------INAPM------- 851 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI---SRDILCEGMKNATKNGYDIVLTV 628 TA + R ++ +Q +R I L V Sbjct: 852 --------QGTAADIIKRAMI----AVDDWLQGSGIDARII----------------LQV 883 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E + V L +LM +PL E + Sbjct: 884 HDELVLEVREDLLEEVGAQLKALMGGAAQ--LDVPLLVEVGVGANW 927 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 198/700 (28%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S + A + ++A + T Sbjct: 345 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 394 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + + T + + + Sbjct: 395 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 452 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 453 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 497 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ Sbjct: 498 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 557 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L+E + + L++ F G + + T + +L + Sbjct: 558 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 616 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + S + L V+ GR+ A TGR S QN+P Sbjct: 617 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANA-ATGRLSSSEPNLQNIP--- 672 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G+K++ AD + IE R++A ++ Sbjct: 673 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 711 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y Sbjct: 712 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 766 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + + L G L + R Sbjct: 767 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + +G + + A + Sbjct: 827 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 854 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Q ++ T G M + VHDE+V Sbjct: 855 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 879 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C+LM + + L AE + Sbjct: 880 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 917 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D+ET L A I ++A A+ Sbjct: 351 FAFDLETDGLDTLT----------ANIVGLSFAVAPGEAAYLPVAHDYLDAPEQLDRDAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N ++R + K I++ ++ T + + + Sbjct: 401 LAQLKPLLEDPDASKVGQNLKYDRGVLKNY-DIELAGIKY-DTMLESYILNSVVGKHDMD 458 Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + Y D + Sbjct: 459 SLSARWLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 503 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + + G ID ++ + + + Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLIDQAILAQHSKELTSRLA 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + T L++ LF GI + T + +L+ + Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G ++V AD + IE R++A ++ Sbjct: 680 ----------------------VRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ GEDI+ T ++ F P+ KV+ EQR K + Sbjct: 718 QDKGLLDAFSQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ ++ + A + RRL D+ Sbjct: 794 YPGVLRYMENTRQLAASNGY--------------------------VETLDGRRLWLPDI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K + R +Q + DI+ M + +++ Sbjct: 828 KSSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIALDDWLQKQTDDAVRMIM 878 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + +LM + A +PL E + Sbjct: 879 QVHDELVFEIKAEAVDEASKQIRALMEGSM--ALDVPLLVEVGVGDNW 924 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 109/708 (15%), Positives = 198/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFATQEGVAAYVPVAHDYLDAPQQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+T V N ++ + + I++ + T + + + Sbjct: 404 LEQLKPILEDDTQAKVGQNLKYDASVLARY-DIELKGIK-HDTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELDEASPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ D E L + I G ID + + IAQ Sbjct: 507 TLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLD 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINSETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ T ID+VS EQR K + Sbjct: 721 GDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQDYMNKYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 797 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQAEGDGRVKLLM 881 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM A +PL AE + Sbjct: 882 QVHDELVFEVQESALTEIESKVQELMESAAELA--VPLVAEAGHGDNW 927 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 191/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D ET + A QA + ++A + + + Sbjct: 335 FAFDTETTALD----------AMQAELVGVSFALEPGRAAYVPLAHVYPGAPDQLDRDRV 384 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + L L D V N ++ + + I + T + + L + Sbjct: 385 LARLKPLLEDPGRPKVGQNLKYDMSVLARY-DIALRGIA-HDTLLESYVLDSTARHDLDS 442 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ + GK + G Y D E T Sbjct: 443 LAKRFLDHDTIRFEDVAGKGAKQIG---------------FDQVPLEQAGPYAAEDAEVT 487 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + P + E L + + G ID + +A++ + Sbjct: 488 LRLHRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAELARKILE 547 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QLA 274 L+E ++ G + + F G+ + T + +L Sbjct: 548 LEESAYRVA-GRRFNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLAAEGHEL 606 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL+ S + L V D GR+ + + TGR S QN+P Sbjct: 607 PRIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 663 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA++G +L+ AD + IE R++A ++ Sbjct: 664 ----------------------IRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLS 701 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ + AFA G+DI+ T A+ + V+ EQR K + Sbjct: 702 GDERLLAAFAGGQDIHRATAAEILGLAPEDVTGEQRRSAKAINF--------------GL 747 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + A + + + Sbjct: 748 IYGMS------------------------------AFGLARQLGIERGAAQEYVDRYFER 777 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + RRL ++ Sbjct: 778 YPGVRDFMDRTRRQVREDGY--------------------------VETLFGRRLHLPEI 811 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 A + +Q + DI+ M ++L Sbjct: 812 GHGNQARRAAAERTA---------INAPMQGTAADIIKRAMIAVDAWIEAEQPAARLILQ 862 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ +C+ M A +PL + E + Sbjct: 863 VHDELVLEVAESAVEETRARVCAAMETAAELA--VPLVVDIGEGANW 907 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 210/709 (29%), Gaps = 166/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + +D ET S + QA + + A + Sbjct: 353 VAVDTETTSLNEM----------QAALVGISLAVEPGRACYIPLRHTEGASGDLFSSDAL 402 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 A+ L L D+ ++ + N ++ +F + I + T +++ Sbjct: 403 AEGQLDLDAVLGALKPMLEDDAILKIGQNMKYDAKIFARH---GIRVAPFDDTMLMSYAL 459 Query: 104 GLP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ K GK+ + D+ Y A+ ++ W Sbjct: 460 NAGIHGHGMDTLSERYLSHQPIPIKELLGTGKSAVTFDRVPVADAVKYAAEDADITLRLW 519 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +F R+ T +++ L ER L + + G ++D + + ++ AQ+ Sbjct: 520 HVFKPQLHREKVTT--VYETL------ERPLSPVLAQMERNGIKVDRETLSRMSGKFAQK 571 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 +L+E+I +L + L LF G+D + T +L Sbjct: 572 MAQLEEEIHELAGRKF-NVGSPKQLGEILFDEMGLDGGKRGKTGAYATGADVLEDLATEH 630 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L+ A S + L + + D GR+ + GA+ TGR + QN+P Sbjct: 631 DLPARVLDWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGAT-TGRLASTDPNLQNIP 689 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G LV D + IE R+LA Sbjct: 690 ------------------------VRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAH 725 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA D +AF +G+DI+ T ++ F+ P+D+++ E R K + Sbjct: 726 IADIDALRQAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN--------------F 771 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 772 GVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRYF 801 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + + +R++ Sbjct: 802 ERFPGIKTYMDKTVDFAKEHG--------------------------FVQTLFNRKIHTP 835 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + S R +Q + DI+ M ++L Sbjct: 836 ----EISAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPAAIEGMPAKMLLQ 885 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E ++ T +M P+ +PL + + + Sbjct: 886 VHDELIFEVEAGAADALIATARDVMEAAADPAVKIDVPLVVDAGQGANW 934 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 193/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D ET S + +A I ++A + + A+ Sbjct: 331 FAFDTETTSLNYM----------EAEIVGLSFAVERGEAAYVPLAHSYPGTPAQLDRDAV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D + N ++ + + I + + T + + + Sbjct: 381 LAALKPLLEDPDKAKLGQNLKYDASVLARY-DIAMQGIAF-DTMLESYVLDSTGTRHDMD 438 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D E Sbjct: 439 SLALKYLGRSTTHFEDVAGKGAKQ---------------ITFDKVGIEEAAAYAAEDAEV 483 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P E L + + G +D + + + + Q + Sbjct: 484 TLALHETLWPKLQETPSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQ 543 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 L+E+ + G + + L LF + + T + +L + Sbjct: 544 ALEEEAHNVA-GQVFNLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEEVLQELALDYPL 602 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ S + L ++ GR+ + + TGR S QN+P Sbjct: 603 PKLLIEHRGLSKLKSTYTDKLPGMINSHTGRIHTSYHQAV-TATGRLSSSDPNLQNIP-- 659 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G ++V AD + IE R++A ++ Sbjct: 660 ----------------------IRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLS 697 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF D++ T A+ F P+D VS EQR K + Sbjct: 698 EDPGLLAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINF--------------GL 743 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + L + + + Sbjct: 744 IYGMS------------------------------AFGLARQLHLDRGEAQRYIDVYFER 773 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV Q + RRL ++ Sbjct: 774 YPGVRQYMVRTRALAHEQGY--------------------------VETLFGRRLYLPEI 807 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 MR++ +Q + DI+ M +++ Sbjct: 808 N---------VRNKMRQQAAERTAINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQ 858 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ V LC LM+ A +PL E + Sbjct: 859 VHDELVLEVAESQLDPVCDELCRLMSAAADLA--VPLLVEAGRGANW 903 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 199/700 (28%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S + A + ++A + T Sbjct: 359 AVDTETTSLDYMV----------AELVGISFAVEAGKAAYLPLTHDYVGAPTQIDKTVAL 408 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L D + V N ++ + GI + + T + + + Sbjct: 409 EKLRPLLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDG 466 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + Y D + T Sbjct: 467 LALKYLGHKNISFEEIAGKGAKQL---------------TFNQIPLETAAPYAAEDADIT 511 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + I +G ID L+ + + +A++ Sbjct: 512 LRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDT 571 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L+E + + L++ F G + + T + +L + Sbjct: 572 LEEKAYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEEVLVELALDFPLP 630 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 631 KVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANA-ATGRLSSSEPNLQNIP--- 686 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G+K++ AD + IE R++A ++ Sbjct: 687 ---------------------IRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQ 725 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y Sbjct: 726 DAGLLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGLA 780 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 LD+ + + F + + + + L G L + R Sbjct: 781 RQLDIPRHEAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAM 840 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + +G + + A + Sbjct: 841 RR-----QGAERAAINAPMQGTAADIIKKAMIN--------------------------- 868 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Q ++ T G M + VHDE+V Sbjct: 869 ---------IAQWIKTETQGE----------------ITMI----------MQVHDELVF 893 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ +C+LM + + L AE + Sbjct: 894 EVDADKAEALKKTICTLMAQAAD--LDVELLAEAGIGNNW 931 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 192/708 (27%), Gaps = 170/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 D ET + A + ++A + + Sbjct: 344 FAFDTETDGLDII----------NANLIGLSFAITPGEAAYLPLAHDYSDAPIQLDRTLV 393 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L + V N F++ + + GI + + T + + + Sbjct: 394 LDKLKPLLENPQKQKVGQNLKFDKSILARC-GIVLQGIAF-DTMLESYILNTVAGRHDMD 451 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + Y D + Sbjct: 452 SLSQRYLQHKTITFEEIAGKGKSQL---------------TFNQIALEQAAPYAAEDADI 496 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L P E L + I G ID ++ + + + Sbjct: 497 TLRLHHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVLIDRAVLAQHSQELTTRLT 556 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+E L + + L+ L+ + + T + +L+ + Sbjct: 557 ELEEQAHLLAEEPF-NLASPKQLQTILYEKQQLPVLKKTPKGAPSTDEEVLAELALDYPL 615 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L ++ GR+ + + TGR S QN+P Sbjct: 616 AKVLLEYRGLAKLKTTYTDKLPSMINPTSGRVHTSYHQAV-TVTGRLSSREPNLQNIP-- 672 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 673 ----------------------IRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLS 710 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + IKAF +DI+ T A+ FN ++ + EQR K + Sbjct: 711 QDSGLIKAFTADKDIHRATAAEVFNVSVETATDEQRRSAKAINF--------------GL 756 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + A+ Sbjct: 757 IYGMS------------------------------AFGLARQLGIARVEAQHYIDLYFAR 786 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + A S RRL D+ Sbjct: 787 YPGVANYMEAIRKQAATQGYVTTL--------------------------SGRRLYLPDI 820 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 + RE +Q + DI+ M + +++ V Sbjct: 821 NASSAMRR---KAAEREAINAP------MQGTAADIIKSAMIEIDAWLQHQPLVRMIMQV 871 Query: 629 HDEIVSETPDTPYF-SVGTLCSLMTKNPS--WAKGLPLKAEGYEAKRY 673 HDE+V E ++ +V + LM + +PL + Sbjct: 872 HDELVFEVHESVVQGAVEKIRHLMEQTTEKSMPLTVPLCVNIGVGANW 919 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 107/712 (15%), Positives = 198/712 (27%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L +D ET S P+ QA + + + Sbjct: 391 FLAVDTETDSLFPM----------QARLVGVSLSLLPGEACYIPLQHGAGGGLDFADAGG 440 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D +++ + N F+ + ++ I K T +++ Sbjct: 441 QPQIPLKEAIARLKPLLEDPSILKIGQNLKFDMTVLRQH---GIQLKGLDDTMLMSYALD 497 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L GK Sbjct: 498 AGVHGHGMDELSELHLGHKPISFAEVAGKG---------------KAQITFDQVPVDRAT 542 Query: 161 EYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L+ L P ER L + + G ++D ++ +L Sbjct: 543 AYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLS 602 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +Q+ + +++I +L G + L LF ++ ++ T L Sbjct: 603 GDFSQKMAQYEDEIYELA-GERFNIGSPKQLGEILFDKQSLEGGRKTKTGAWSTDADTLE 661 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 +L+ S + L E ++ GR+ ++ TGR + Sbjct: 662 ALAAKGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLA-STSTGRLASTE 720 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R+ +A G L+ AD + I Sbjct: 721 PNLQNIP------------------------VRTEDGRKIRTAFVAEKGNLLISADYSQI 756 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA IA + KAFA G DI+ T ++ F PI+ + R K + + Y Sbjct: 757 ELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYG-- 814 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + F+ + ++ +D + + + G Sbjct: 815 ---ISAFGLANQLGIPRQEAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIH 871 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 L K+ +G + R A I +P Sbjct: 872 LPAINS--KNPAEKSFM---ERAAINAPIQGSAADIIRRAM--------------IRMP- 911 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 QA++ D + Sbjct: 912 --------------------------------------QALA-D-AKLA--------ARM 923 Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTK--NPSWAKGLPLKAEGYEAKRY 673 +L VHDE++ E P+ + +M+ P+ A +PL + AK + Sbjct: 924 LLQVHDELIFEVPEKEAEKTSKVVSRIMSDAAAPAVALTVPLDVDARAAKNW 975 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 107/708 (15%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET S L A I ++A + Sbjct: 314 FAFDLETDSLDTL----------SANIIGISFATAPGEAAYLPVAHDYLDAPEQLDRSDV 363 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N F+R + K+ I++ R+ T + + + Sbjct: 364 LARLKPLLEDPQSQKVGQNLKFDRGVLKRY-DIELLGIRF-DTMLESYALNSVAGRHDMD 421 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A + Y D + Sbjct: 422 TLASRWLQHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 466 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + Sbjct: 467 TLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLA 526 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + L+ LF GI + T + +L+ + Sbjct: 527 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 585 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 586 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 642 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 643 ----------------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLS 680 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA+ +DI+ T A+ F +DKVS EQR K + Sbjct: 681 QDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINF--------------GL 726 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 727 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 756 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVLQ + E A + RRL D+ Sbjct: 757 YPGVLQYMESTRELAAQKGY--------------------------VSTLDGRRLYLPDI 790 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ M +++ Sbjct: 791 NASNAMRR---KAAERAAINAP------MQGTAADIIKRAMIAVDSWLEQQPSPEVKMIM 841 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + +LM + +PL+ + + Sbjct: 842 QVHDELVFEVQADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 887 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 108/716 (15%), Positives = 201/716 (28%), Gaps = 178/716 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L D ET S P+ QA + + A + Sbjct: 398 LAFDTETTSVDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGTVE 447 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L L D +V+ +A N ++ ++ ++ I + + T +++ Sbjct: 448 GQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDA 504 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + + Sbjct: 505 GTGSHGMDPLSERWLGHTPIAYKDVAGSGKSS---------------VTFDMVDIDRATA 549 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 550 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 609 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 +AQ +++I +L G + L LF G+ ++ T +L Sbjct: 610 DLAQAAAAYEDEIYELA-GERFTIGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 668 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 I++ + + L ++ R T ++ TGR S Sbjct: 669 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTSTGRLSSSDPN 728 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G KL+ AD + IE Sbjct: 729 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 764 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 765 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 815 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 816 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 840 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + G+ + R Sbjct: 841 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 874 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KN 620 R Y D++ + R +Q + DI+ M K Sbjct: 875 RAHYPDIRASNPQIRAF---NERAAINAP------IQGSAADIIRRAMIRMEDALAKEKL 925 Query: 621 GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ +V + +M P+ + +PL + A + Sbjct: 926 AARMLLQVHDELIFEVPENEVEKTVSVVRHVMENAAMPAVSLAVPLHVDARAAHNW 981 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 96/709 (13%), Positives = 201/709 (28%), Gaps = 165/709 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + + + + T + Sbjct: 351 YVAVDTETTGLDEMV----------VDLVGISLCVEPGEACYIPLTHKVGGDDLFGGEGL 400 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D ++ + N ++ + + T +++ Sbjct: 401 AEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY---GADVAPIDDTMLMSYAL 457 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ K + GK+ I ++ PY A+ ++ W Sbjct: 458 HAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANAVPYAAEDADITLRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF ++ T +++ L ER L + + G ++D +++ ++ AQ+ Sbjct: 518 QLFKPQLHQEQVTT--VYETL------ERPLVPVLAQMERHGIKVDREVLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 L+ +I ++ + L LF + + T IL Sbjct: 570 MAGLESEIHEMAGADF-NVGSPKQLGEILFDKLELPGGKKGKTGAYATGADILEDLATEH 628 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L+ S + L + ++ R+ + GAS TGR + QN+P Sbjct: 629 ALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGAS-TGRMASTDPNLQNIP 687 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G L+ D + IE R+LA Sbjct: 688 ------------------------VRTEEGRRIREAFVAGEGNVLLSLDYSQIELRILAH 723 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +AG D +AFA G+DI+ T ++ F+ P+ +++ + R K + Sbjct: 724 MAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAIN--------------F 769 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 770 GVIYGISGF------------------------------GLARNLRIPRKEAQDFIDRYF 799 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + E + R++ Sbjct: 800 QRFPGIRRYMDSTVEFAKEHG--------------------------FVQTLFGRKIHT- 832 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + + R +Q + D++ M ++L Sbjct: 833 ---AEINAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPGAIAHLPARMLLQ 883 Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ + +M P+ + L E + + + Sbjct: 884 VHDELLFEVPEAAVEETIAVAKEVMEGAANPAVHLDVKLLVEAGQGQNW 932 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 109/714 (15%), Positives = 188/714 (26%), Gaps = 184/714 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + +D ET S + + + A Sbjct: 339 HVAVDTETDSLDSV----------SGGLVGVSLALAPGEACYIPLAHVDPEAKGDGDMFG 388 Query: 53 -----------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 L L D V+ + N ++ +F + I T +++ Sbjct: 389 ADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYDLSVFAQH---KIHVHPIDDTMLISF 445 Query: 102 TNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + + L K G ++ A Sbjct: 446 ALNAGIHGHGMDDLSERYLGHKPITFKDVAGTG---------------KAQKSFAQVALD 490 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207 EY D + T L++ L P E R L + + G ++D D++ Sbjct: 491 KATEYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLS 550 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263 +L Q L+ + + G + L LF + ++ T Sbjct: 551 RLSADFNQRMAALEAEAHEQA-GRSFNIGSPKQLGEILFDEMNLPGGKKTKTGAWVTDGD 609 Query: 264 ILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L + I++ S L A++ GR+ + GA +TGR S Sbjct: 610 VLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGA-QTGRLS 668 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA G LV AD Sbjct: 669 STDPNLQNIP------------------------VRTEEGRKIRQAFIAEEGNVLVSADY 704 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +A +AF +G DI+ T ++ F PI+ + R K + Sbjct: 705 SQIELRILAHMADIPALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAIN----- 759 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ + + Sbjct: 760 ---------FGIIYGISGF------------------------------GLGRQLGIPSG 780 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ Q + E + Sbjct: 781 EANQYIKTYFERFPGIRQYMDETKEFARATG--------------------------FVK 814 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 R++ D+K A S R+ +Q + DI+ M + Sbjct: 815 TAFGRKIHLPDIKSK----GPARSFAERQAINAP------IQGSAADIIKRAMIRMPEAL 864 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAE 666 ++L VHDE+V E P+ + L M PS +PL E Sbjct: 865 AEAGLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMAAADGPSLRLSVPLVVE 918 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 109/710 (15%), Positives = 199/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET S + A + + + + Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDL 400 Query: 51 --SAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P DL L D+ ++ + N ++ +F + I T +++ Sbjct: 401 VADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + C L K G K+ I + Y A+ ++ W Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQAVCYAAEDADVTLRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF R T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 518 RLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNIT- 271 L+ +I L G + L LF G+ + + GT +L Sbjct: 570 MAALEAEIHGLAGGPF-NVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDLAAEG 628 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L E + GR+ + GA+ TGR + QN+ Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 688 P------------------------VRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF G DI+ T A+ FN P++ + R K + Sbjct: 724 HIADIPALKQAFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAIN-------------- 769 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + + RR+ Sbjct: 800 FERFPGIRAYMDETVAFAKAHG--------------------------FVQTLFGRRINT 833 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626 + + R +Q + D++ M K ++L Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKALDGLPAKMLL 883 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + V + +M P+ +PL + + Sbjct: 884 QVHDELLFEVDEAAADPVIARVREVMESASEPAVKLSVPLTVDAGRGANW 933 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 188/705 (26%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 ID ET S A + + + + ++ Sbjct: 340 AIDTETTSLD----------VMNAKLVGISLSIEPGHAAYIPLAHHSMEQSEQLPLQSVL 389 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L +L + V N ++ + GI + T + + + + Sbjct: 390 DKLKPWLENPKKHKVGQNLKYDSHVLANY-GIRLQGI-VHDTLLESYVLESHRRHDMDSL 447 Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L++ GK A + Y D + T Sbjct: 448 SERFLDYKPVSYTDICGKGASQIG---------------FDEIAIDVATHYAAEDADVTL 492 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + + P E ++ Q + G ID+D + + + L Sbjct: 493 QLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDSL 552 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKD 276 E+ + L LF + + + T + +L Sbjct: 553 QENAYVTAGQPF-NLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKLAEDFPLPK 611 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +IL+ S + L V+ GR+ A TGR + QN+P Sbjct: 612 IILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 666 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G K++ AD + IE R++A ++ + Sbjct: 667 --------------------IRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSDD 706 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +KAF +G+D++ T ++ F+ +V+ +Q Sbjct: 707 ASLLKAFHDGQDVHRATASEIFDITPLEVTSDQ--------------------------- 739 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + T + + ++ Sbjct: 740 -----------------RRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFERYP 782 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + + + RRL ++ Sbjct: 783 GVARYMDETRQLAREQGYVETVF--------------------------GRRLWLPEINS 816 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 A R +Q + DI+ M K +++ VH Sbjct: 817 PNGPRRQAA---ERAAINAP------MQGTAADIIKLSMIAVQDWLEKEKLDSKLIMQVH 867 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V + P+ V L LM + +PL AE + Sbjct: 868 DELVLDVPEKELVLVREKLPELMAQVAR--LKVPLIAEVGVGDNW 910 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 106/695 (15%), Positives = 186/695 (26%), Gaps = 148/695 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 + D ET S PL A I +++ T + Sbjct: 367 ICFDTETTSLDPLT----------AQIVGMSFSVAAGTGAYLPLTHDYFDAPSQLPLAEV 416 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + L + T+ V N +++ + GI + T + + + Sbjct: 417 LAKFKPLLENPTIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRGHGMDE 474 Query: 112 A-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK G A + + Sbjct: 475 LSARHLGIEPISFEQVAGKGAKQ---VGFNQVTIEVAAEYAAEDADITLQLHEALSPQV- 530 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + K S E TI G ID +++ + I + +L+ +L Sbjct: 531 LQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELEAKAFELAGQ 590 Query: 231 IIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L+ LF GI + T + +L + ++L + Sbjct: 591 PF-NLGSPKQLQEILFGKLGIKPIKKTPSGAPSTDEDVLQELALDYPLPKVLLEYRGLAK 649 Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + ++ GR+ A TGR + QN+P Sbjct: 650 LKSTYTDKLPKMINAHTGRVHTNYNQAVA-ITGRLASSDPNLQNIP-------------- 694 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA G +V AD + IE R++A ++ + ++AFAN Sbjct: 695 ----------VRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFANN 744 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F V EQ Sbjct: 745 EDIHRATAAEIFGVERSAVDNEQ------------------------------------- 767 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + L A + +A + + + A++ GV Q +D Sbjct: 768 -------RRYAKVINFGLIYGMSAFGLAQNLNIERSAAQNYIERYFARYPGVRQYMQDTR 820 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E RRL ++ Sbjct: 821 ELAKEKGYVETYF--------------------------GRRLWVPEINSANGMRRAGA- 853 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M K +++ VHDE+V E D+ Sbjct: 854 --ERAAINAP------MQGTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADS 905 Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM +PL AE + Sbjct: 906 ELELVKQKLPELMQSVAK--LDVPLLAEVGVGSNW 938 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 97/707 (13%), Positives = 192/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET + + A + + A + + Sbjct: 348 ISFDTETDALDAMR----------ARLVGISLAVEPGKAAYIPVGHDYPGAPPQLPMQQV 397 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L+D + + ++ + ++ G+++ T + + + Sbjct: 398 LDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVEVQGYH-DDTMLESFVLNSTATRHDMD 455 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L ++ + GK Y D + Sbjct: 456 SLALRYLGYNTIKFEDVAGKGAKQ---------------IPFSQVGIDEASRYAAEDADI 500 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P D E L + +I G RID + + + ++ Sbjct: 501 TLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVELRRQSQDLSSRML 560 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 + +L G + L+ LF + T + L Sbjct: 561 AAQQKATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHEL 619 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L E V+ D GR+ + GA TGR S QN+P Sbjct: 620 PRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA-ATGRLSSSDPNLQNIP-- 676 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +L+ AD + IE R++A ++ Sbjct: 677 ----------------------IRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLS 714 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF G D++ T A+ F +++V+ +R K + Sbjct: 715 EDPGLVGAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GL 760 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + ++ Sbjct: 761 MYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSR 790 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + + RRL +D+ Sbjct: 791 YPGVRDFMERMRQQARDQGY--------------------------VETLFGRRLYLNDI 824 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 L R +Q + DI+ M + + ++L Sbjct: 825 HARNQGLRAGA---ERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQ 875 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V ET + + + M++ +PL + + Sbjct: 876 VHDELVFETESSFVEELRLQVVERMSQAAK--LRVPLVVDTGIGNNW 920 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 113/711 (15%), Positives = 198/711 (27%), Gaps = 174/711 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 D ET S + +A + + A Sbjct: 341 YFAFDTETTSLNYM----------EAELVGVSLAMAPGEAVYIPVGHDYMEAPDQVGRDW 390 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSL 109 + L L E V N ++ + ++ I + T + + G + Sbjct: 391 LLEQLKPLLEAEKPQKVGQNLKYDSHILRRYK-IRLAGI-LNDTMLASYVFNSVGSRHDM 448 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LN + GK + A + G Y D + Sbjct: 449 DTLSLHYLNHKTISFEDIAGKGAKQL---------------TFNQIALEQAGPYAAEDAD 493 Query: 169 ATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 T L L E L + + G RID +L+ K + IA++ Sbjct: 494 ITYRLHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEK 553 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQ 272 L++ ++ + L+ F + + + T + +L Sbjct: 554 LDALEKKAFEIAGEEF-NLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEEVLHELAHDY 612 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 D+IL S + L + ++ D GR+ + Q + TGR S QN+P Sbjct: 613 PLPDVILQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAV-TATGRLSSTDPNLQNIP 671 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 VR I G K+V D + IE R++A Sbjct: 672 ------------------------IRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAH 707 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ ++ +KAFA G DI+ T A+ F D+VS +QR K + Sbjct: 708 LSQDESLLKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVN--------------F 753 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 754 GLIYGMS------------------------------AFGLARQLGIARHEAQHYMDKYF 783 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + GVL+ +D + RRL Sbjct: 784 ERFPGVLRYMEDTRKQAKEQGYVKTLF--------------------------GRRLPLP 817 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--------NGYD 623 D+K R +Q + DI+ + M + Sbjct: 818 DIKASNGARR---KGAERAAINAP------MQGTAADIIKKAMLKVADWIDSNNCQDDVR 868 Query: 624 IVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ VHDE+V E ++ + L +M K S +PL AE + + Sbjct: 869 MLMQVHDELVFEIKESKLTDYIEQLTEVMEKAAS--LDVPLIAEAGKGNNW 917 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 107/710 (15%), Positives = 202/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + T + Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGICLCVVPGQACYVPLTHKAGNSDDLFGSDD 398 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L D+ ++ + N ++ +F + GIDI T +L+ Sbjct: 399 LAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDITP--IDDTMLLSYA 455 Query: 103 NG---LPSSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L+ K G K+ I D+ PY A+ ++ Sbjct: 456 LHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDATPYAAEDADITLRL 515 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ F + T +++ L ER L + + G ++D D + ++ +Q Sbjct: 516 WQQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQNGIKVDRDTLSRMSNAFSQ 567 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I +L G + L LF + + T IL Sbjct: 568 KMAALEAEIHELA-GESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYATGADILEDLATE 626 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L E + GR+ + GA+ TGR + QN+ Sbjct: 627 HELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A G L+ D + IE R+LA Sbjct: 686 P------------------------VRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILA 721 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +AG D +AFA+G DI+ T ++ F+ P+++++ E R K + Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAIN-------------- 767 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 768 FGVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRY 797 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ Q D + R++ Sbjct: 798 FERFPGIRQYMDDTVNFAKDHGY--------------------------VQTLFGRKIHT 831 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + + S R +Q + D++ M ++L Sbjct: 832 P----EIAAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPDAIAHLPARMLL 881 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E P+ + +M A + L + + + Sbjct: 882 QVHDELLFEVPEDHVDETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 203/709 (28%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + A + ++A + + Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWV 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N ++ + + G+++ R T + + + Sbjct: 411 IAQLKPLLEDENKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Q +Y D + Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 514 TLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ PI++VS EQR K + Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL Sbjct: 804 YPGVMQYMEDTRSRAAEQGYVETIF--------------------------GRRLHLP-- 835 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 836 --EITSRNGMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL A+ + Sbjct: 888 MQVHDELVFEVEESSLSEIEIKVQELMESAAELA--VPLVADAGHGDNW 934 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 105/709 (14%), Positives = 198/709 (27%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET A++A + ++A A+ Sbjct: 336 FAFDTETTGLD----------AQKAQLVGLSFAVAPHEAAYVPLAHDYEGAPAQLDRDAV 385 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109 L L D V N+ ++ + + I++ + T + + + Sbjct: 386 LLALKPLLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAY-DTMLESYVLNSTATRHDM 444 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + + GK + G Y D + Sbjct: 445 DSLAQKYLDHTTIAFEDIAGKGAKQL---------------TFNQINLDKAGPYAAEDAD 489 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L D E L + I +G +D L+ + + Sbjct: 490 ITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALVDAALLHVQSGELGVKM 549 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 +L++ +L + L L+ G+ ++ + T +++L + Sbjct: 550 GELEQRAYELAGEEF-NLGSPKQLGAILYDKLGMPVLSKTAKGQPSTAEAVLDELALLGY 608 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G KL+ AD + IE R++A Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF N D++ T A+ F + V+ +QR K + Sbjct: 704 LAKDEGLLHAFRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAIN--------------F 749 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D+ L R +Q + DI+ M N ++ Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVI 864 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + M++ +PL E + Sbjct: 865 LQVHDELVLEVREDLVQQVKDEIRQHMSQAAQ--LDVPLLVEAGIGANW 911 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 198/709 (27%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S A++A + ++A + A+ Sbjct: 336 FAFDTETTSLD----------AQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAV 385 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLP---SSL 109 L L+D V N+ ++ + + I + + T + + + Sbjct: 386 LLALKPLLQDPAKEKVGQNAKYDINILANGSPAIQMQGVAY-DTMLESYVLNSTATRHDM 444 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + + GK + G Y D + Sbjct: 445 DSLAQKYLDHATIAFEDIAGKGAKQL---------------TFNQIHLDKAGPYAAEDAD 489 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L D E L + I +G +D L+ + + Sbjct: 490 ITLRLHQALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKM 549 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT-Q 272 L+ +L + L L+ G+ ++ + T +++L Sbjct: 550 ADLERRAYELAGEEF-NLGSPKQLGSILYDKLGMPVLSKTAKGQPSTAEAVLDELAEQGY 608 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++++ + S + L ++ GR+ + Q A TGR S QN+P Sbjct: 609 PLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVA-ATGRLSSSDPNLQNIP 667 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G KL+ AD + IE R++A Sbjct: 668 ------------------------IRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF N D++ T A+ F ++ V+ +QR K + Sbjct: 704 LAKDEGLLHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINF-------------- 749 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 750 GLIYGMS------------------------------AFGLAKQIGVDRKQSQDYIDRYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GVL + A + RRL Sbjct: 780 ARYPGVLAYMERTRAQAAEQG--------------------------FVETLFGRRLYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D+ L R +Q + DI+ M N ++ Sbjct: 814 DINAKNPALR---KGAERTAINAP------MQGTAADIIKRAMVNVDNWLSESGLDARVI 864 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E + V + M+K +PL E + Sbjct: 865 LQVHDELVLEVREDLVDQVKDEIRGQMSKAAQ--LDVPLLVEVGVGSNW 911 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 191/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A + + + + Sbjct: 339 SLDTETTSLDSMT----------ARLVGISLSVKPGFAAYIPLAHHPIEVAKQLPLDHVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L +L + V N ++ +F I + T + + + + Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHIFANYH-IHLQGIA-HDTLLESYVLESHRRHDMDSL 446 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L ++ + GK Y D + T Sbjct: 447 SERLLDYKPISYEEICGKGASQIG---------------FDQIELDCATRYAAEDADITF 491 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + + P + E + L+ Q + G ID DL+L +A + +L Sbjct: 492 QLHENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDEL 551 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 ++ + L LF G+ + T + +L + Sbjct: 552 EKKAY-SVAEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEKLALDYPLPK 610 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +IL+ + + L ++ GR+ A TGR + QN+P Sbjct: 611 IILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 665 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +V AD + IE R++A ++ + Sbjct: 666 --------------------VKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDD 705 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +KAF G+D++ T ++ F+ +V+ EQ Sbjct: 706 PGLLKAFREGQDVHKATASEIFDIAPLEVTPEQ--------------------------- 738 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + T + + ++ Sbjct: 739 -----------------RRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFRRYP 781 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + + + RRL ++ Sbjct: 782 GVAEYMDAIRQTAREQGYVETVF--------------------------GRRLWLPEINS 815 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 A R +Q + DI+ M + +++ VH Sbjct: 816 PNGPRRQAA---ERAAINAP------MQGTAADIIKLSMIAVNDWIENEQLESKLIMQVH 866 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L LM + S +PL A+ K + Sbjct: 867 DELVLEVPDKELERVRKRLPELMGQVAS--LKVPLIADVGFGKNW 909 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 201/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 360 FAFDTETDSLDYMV----------ANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWV 409 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+T V N ++ + + GI++ + T + + + Sbjct: 410 LEQLKPILEDDTQAKVGQNLKYDMSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMD 467 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 468 SLALRFLQHSCISFEQIAGKGKKQL---------------TFNQIELGEASPYAAEDADV 512 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL+ + E L + I G ID L+ + IA Sbjct: 513 TLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLD 572 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 573 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 631 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 632 PKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 688 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 689 ----------------------IRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLS 726 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ ++AF G+DI+ T A+ ID+V+ EQR K + Sbjct: 727 GDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNF--------------GL 772 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 773 IYGMS------------------------------AFGLAKQLGIPRGEAQHYMDTYFER 802 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 803 YPGVMQYMEDTRSAASEQG--------------------------FVETIYGRRLHLPEI 836 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M + +++ Sbjct: 837 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWIQAEGDGRVKLLM 887 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL AE + Sbjct: 888 QVHDELVFEVQESALAEIESKVQQLMESAAD--LEVPLVAEAGHGDNW 933 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 117/712 (16%), Positives = 210/712 (29%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET P+ QA I + A + + Sbjct: 393 FVAVDTETTGLDPM----------QADIVGFSLATAPNEACYVPLSHKGGDEGLFSEGLL 442 Query: 51 -SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 +P + + + V+ + N ++ ++ K+ LGI++ + T +++ Sbjct: 443 PDQIPIPDAVAAIKPLMEHPGVLKIGQNLKYDWLILKR-LGIEL--GPYDDTMLVSYVLD 499 Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 P + + L + + GK A Sbjct: 500 AGASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQ---------------ICFDRAAIDKAT 544 Query: 161 EYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQ 210 +Y D + T L++ L P E R L + + +RG ID ++ +L Sbjct: 545 DYAAEDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLS 604 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILS 266 AQ +L+ +I ++ G + L LF G + T +L Sbjct: 605 GEFAQGMGRLEAEISEMA-GETFNPGSPKQLGDILFGKMQIPGGRKTPTGAWSTGADVLE 663 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 IL+ + L V+ GR+ + A+ TGR S Sbjct: 664 ELAEQGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALA-ATTTGRLSSSE 722 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R IA+ G KLV AD + I Sbjct: 723 PNLQNIP------------------------VRTEEGRKIRKAFIAAPGHKLVSADYSQI 758 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA IA +AF +G DI+ T ++ F P++ + E R K + + Y Sbjct: 759 ELRLLAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYG-- 816 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + FE + ++ ++ E + L G C Sbjct: 817 ---ISAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCH 873 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + AK+ + Sbjct: 874 YPDIS--AKNPSIRAFN---ERAAINA--------------------------------- 895 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 RL S + + L + +S + Sbjct: 896 --RLQGSAADIIRRAMARMDAALEKA-------------GLSA---------------RM 925 Query: 625 VLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 +L VHDE++ E PD ++ + M P+ A +PLK + A+ + Sbjct: 926 LLQVHDELIFEVPDDEIAATIPVVRETMELAPFPAVALKVPLKVDARAAENW 977 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET + + A + + A + + Sbjct: 348 ISFDTETDALDAMR----------ARLVGVSLAVEPGRAAYIPVGHDYPGAPAQLPMQQV 397 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L+D + + ++ + ++ G+D+ T + + + Sbjct: 398 LDALRPVLQDPAKKKLGQHGKYDLHVLRRH-GVDVQGYH-DDTMLESFVLNSTATRHDMD 455 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L +S + GK + +R Y D + Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ---IPFSQVGIDEASR------------YAAEDADI 500 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P D E L + TI G RID D + + + ++ Sbjct: 501 TLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRRQSQDLSSRML 560 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 + +L G + L+ LF + T + L Sbjct: 561 AAQQKATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIAEQHEL 619 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L E V+ GR+ + GA TGR S QN+P Sbjct: 620 PRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGA-ATGRLSSSDPNLQNIP-- 676 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G +L+ AD + IE R++A ++ Sbjct: 677 ----------------------IRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHLS 714 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AF G D++ T A+ F +++V+ +R K + Sbjct: 715 EDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GL 760 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + ++ Sbjct: 761 MYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSR 790 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + + RRL +D+ Sbjct: 791 YPGVRDFMERMRQQARDQGY--------------------------VETLFGRRLYLNDI 824 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 L R +Q + DI+ M + + ++L Sbjct: 825 HARNQGLRAGA---ERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQ 875 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V ET + + + M++ +PL + + Sbjct: 876 VHDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGIGSNW 920 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 186/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I ++A + + + Sbjct: 353 SFDTETTSLDPMR----------ARIVGVSFATEPGRAAYVPLAHRGPDHPVQLPRDEVL 402 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L V + ++ + GI + T + + P + N Sbjct: 403 ARLKPWLESPAHKKVGQHLKYDAQVLASH-GITLAGIE-HDTLLESYVLESHRPHDMDNL 460 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + + EY D + T Sbjct: 461 ATRHLGVKTIKYEDVAGKG---------------AAQIGFDEVSVDVATEYSAEDADITL 505 Query: 172 ELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P E + Q I G ID D ++ + +L Sbjct: 506 RLHQVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLEL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + L G + + F + + T + +L Sbjct: 566 QAEAYALAGGEF-NLNSPKQIGEIFFQQLQLPVVKKTPSGAPSTDEDVLQKLAEDYPLPK 624 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L+ A + + L + ++ D GR+ A TGR + QN+P Sbjct: 625 VLLDYRALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 679 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +V AD + IE R++A I+G+ Sbjct: 680 --------------------VRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGD 719 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF +GED++ T ++ F +V+ EQR I KV+ L Y Sbjct: 720 ASLMAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMS-----AFGLAS 774 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + + G L Sbjct: 775 NLGIARDAAKLYIDRYFARYPGVARYMDETRMEAKSCGFVQTVFGRRLWL---------P 825 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 826 EINGGNGPRRQAAERAAINAPMQGT----------------------------------- 850 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 KL+ VQ D + + +++ VHDE+V E Sbjct: 851 ---------------AADLIKLSMITVQ----DWIERA-----RVKSRLIMQVHDELVLE 886 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD + + LM +PL AE + Sbjct: 887 VPDDELEIIRAKVPELMCSVAQ--LNVPLVAELGTGANW 923 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 112/715 (15%), Positives = 213/715 (29%), Gaps = 179/715 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-------VKLWDRTEQ------ 50 ID ET S A +A I ++A+ ++ T Sbjct: 355 FAIDTETTSLN----------AMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPE 404 Query: 51 ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL- 105 + + L L + + V N ++ +FK GI++ + T + + Sbjct: 405 QLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAY-DTMLESYCFNSV 462 Query: 106 --PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 ++ + LN S K G + + + Y Sbjct: 463 ATRHNMDDLALTYLNHSTIHFKDIAGTGKKQ---------------KTFNQIELETASPY 507 Query: 163 CKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 D + T +L + L+P + E L + + G ID ++ Sbjct: 508 AAEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSY 567 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSH 267 + Q+ +L++ + + + L+ LF + + T + +L Sbjct: 568 ELGQKLTELEQKAHLIAGTPF-NLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPVLVQ 626 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 +LIL + + ++L + ++ GR+ + Q AS TGR S Sbjct: 627 LAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVAS-TGRLSSTEP 685 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R IA G +L+ +D + IE Sbjct: 686 NLQNIP------------------------IRSAEGRRIRQAFIAQPGYRLMASDYSQIE 721 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R++A ++G+ +KAFA G+DI+ T A+ FN P+++V+ EQR K + Sbjct: 722 LRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNF-------- 773 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + + Sbjct: 774 ------GLIYGMS------------------------------AFGLAKQLNISRGLAQE 797 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + A++ GV + E + Sbjct: 798 YINLYFARYPGVANYMESTKENAKQTGYVETLM--------------------------G 831 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RRL D+ L R +Q + DI+ M + Sbjct: 832 RRLYLPDINAKNGQLRQYA---ERTAINAP------MQGTAADIIKTAMVKMQQWLDQTP 882 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ VHDE+V E + + ++M +PL E + + Sbjct: 883 CDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAALK--LDVPLIVEIGDGLNW 935 >gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 712 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 248/713 (34%), Positives = 345/713 (48%), Gaps = 61/713 (8%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 S L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L Sbjct: 9 SILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAAL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 68 HNPAVLLYFHNSHFDRTVL-RHCGINIPLERWRDSMAQALAHALPGALGTLCELLRVPVE 126 Query: 122 LTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--I 178 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 127 QAKAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSH 186 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q Sbjct: 187 NYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQR 246 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 247 DALLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNC 306 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIAD 355 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D Sbjct: 307 TSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDD 366 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI------- 408 + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K++AF + + Sbjct: 367 VMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTW 426 Query: 409 ---------------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVM 435 Y YA +F V+KEQR IGKV Sbjct: 427 HSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQ 486 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 ELALGY GG F A+ +DL+ ++ W + + Sbjct: 487 ELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQQA--VEALQWTKANHRPTFGL 544 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 545 SDRAWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSR 599 Query: 556 RDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDI 609 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+ Sbjct: 600 AWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDV 659 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662 L M GY IVLTVHDEI++E D F+ L +LM P +G P Sbjct: 660 LAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712 >gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] Length = 601 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 203/659 (30%), Positives = 300/659 (45%), Gaps = 74/659 (11%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFKKTLGI-DIPS 90 AYA DE LW +P + + + A NS FE ++ + P Sbjct: 1 MAYAIGDEDPILW--LPGDDLPEFV----TNPSEFTIYAWNSFFEWCIWHHVQEWSNAPI 54 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 W T+ LA +P +L AL + K + GK LI R K + D Sbjct: 55 FLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSKPNRGKRIQDA--- 111 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 + F EYC++DV R + RL PLS ER +W LDQTIN RG ID V Sbjct: 112 ---DLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVENAL 168 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 +I Q +KL++++ +LT + + Q + Y+ G L+ + L+++L + Sbjct: 169 LIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLEDETL 228 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +A+ LI R ++ K L + V+ D R G L ++GA+ TGRWSG FQPQNL Sbjct: 229 PPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQNL 287 Query: 331 PRQERSEEILTQTIQALNRGE----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 PR + + E DP+ S +R I A GK+L+V D + IEA Sbjct: 288 PRPSFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYSQIEA 347 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVL W+AG++ + G +IY T ++ + P +KV++EQR IGKV LALGYQGGAK Sbjct: 348 RVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQGGAK 407 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 F+ MA G+++ + + Sbjct: 408 AFQGMAEVYGVEIDT---------------------------------------DLADEI 428 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K WR ++ +++ W + + V G + + R + LPS R Sbjct: 429 KVDWRVANRKIVKFWWGVEKAALNAVTHPGKT-----FEIRAIKFRFTDNYLFCRLPSGR 483 Query: 567 RLVYSDVKGDCSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 L Y K N+ T + R+ TYGGKL ENI QA++RD++ E M Sbjct: 484 LLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMAEAMLR 543 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY++VL+VHDE+++E + + SV LM + P WAKGLP+ +EG+E RYRK Sbjct: 544 VENAGYEVVLSVHDELIAEA-NDDFGSVEEFEQLMCELPVWAKGLPVTSEGFECLRYRK 601 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 195/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 ID+ET S + A I + A + + + Sbjct: 327 FSIDLETNSLNYM----------DAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQLDRDRV 376 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L E + N ++ + + GI++ + + + + + Sbjct: 377 LDALRPLLEAEQPEKMGQNLKYDMSVLARY-GIELRGVAY-DSMLESYVLDSTATRHDMD 434 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 435 SLASKYLGVEVTSYEQLCGKGVRQ---------------VPFAEIDVERAGHYAAEDADI 479 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 L + L P E L + + G R+D DL+ + E +A Sbjct: 480 ALRLHQLLYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMA 539 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT-QL 273 ++++ + G + ++ F G+ T +S+L + Sbjct: 540 EVEQRAHEEA-GEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHE 598 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL S + L + + D GR+ + A TGR S QN+P Sbjct: 599 LPRLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP- 656 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +AS G +L+ AD + +E R++A + Sbjct: 657 -----------------------VRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHL 693 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G++ +AF GEDI+ T A+ F D+V+ EQR K + Sbjct: 694 SGDEGLRRAFEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINF--------------G 737 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + Sbjct: 738 LIYGMS------------------------------AWGLGRQLGIPRDEAQTYIDRYFE 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV E RRL + Sbjct: 768 RYPGVRAFMDRAREQAREQGYVETVF--------------------------GRRLHVPE 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 + R +Q + D++ M + +V+ Sbjct: 802 IHSRNRQRREYA---ERTAINAP------MQGTAADVIKRAMIDVDALLNERFPESRLVM 852 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ +V + LM + +PL+ E + Sbjct: 853 QVHDELVLEVPEAQATAVGDEVRRLMEGSDRGMVSVPLEVELGVGDDW 900 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 116/711 (16%), Positives = 202/711 (28%), Gaps = 165/711 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + D ET S A QA + + + Sbjct: 204 YVAFDTETTSLN----------AMQAELVGISLSTSTGKACYIPLAHIDGEGDLLGGGAL 253 Query: 50 -QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + +P + L L D V+ +A N ++ ++ + + T +L+ T Sbjct: 254 IEGQIPLKDALAILKPMLEDPAVLKIAQNLKYDWLVMTHY---GVNVTSYDDTMLLSYTV 310 Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L K G K++I + Y A+ ++ W Sbjct: 311 DAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMITFDKVPLDKATAYAAEDADVTLRLW 370 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q+ D AT +++ L ER + + + RG +D ++ +L AQ Sbjct: 371 QVLKPRLASDRMAT--VYETL------ERPMVPVLARMEQRGIAVDRQMLSRLSGDFAQG 422 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271 L+ +I +L G + L LF G+ ++ T S+L Sbjct: 423 MAGLEAEIHELA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSASVLEDLAAEG 481 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 I+ S + L + D + T A+ TGR S QN+P Sbjct: 482 HTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEPNLQNIP 541 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 A +R +A G KL+ AD + IE RVLA Sbjct: 542 ------------------------VRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAH 577 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A KAF G DI+ T ++ F TPI+ + R K + Sbjct: 578 MADIPQLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINF-------------- 623 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ + + K + Sbjct: 624 GIIYGISAFGLAAQ------------------------------LGISRGEASDYIKTYF 653 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + + + R+ Y Sbjct: 654 ERFPGIKEYMEATKKQVHATGYVTTIF--------------------------GRKAHYP 687 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625 DV + Y +Q + DIL M K ++ Sbjct: 688 DVNTKNPNMRNF---------YERAAINAPIQGSAADILRRAMVRMEDRLLSSKLDAQML 738 Query: 626 LTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P+ ++ + +M P +PL+ + A + Sbjct: 739 LQVHDELIFEVPEVQVDATIPLIKDVMENACDPVLKLSVPLQVDARAADNW 789 >gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 560 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 178/612 (29%), Positives = 271/612 (44%), Gaps = 78/612 (12%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSID 141 G+ + W CT + + T GLP SL++ L K+ EGK LI FC + Sbjct: 5 GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGL--DKQKLTEGKNLIKYFCLPCNPTKV 62 Query: 142 SPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRG 198 + + H + W+LF Y KRDVE + ++L P+ D + LDQTINDRG Sbjct: 63 NGGRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQTINDRG 122 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ID V +L + + L ++ +T + +R +L G+++ + + Sbjct: 123 IEIDSLFVESAIKLDQEVKTHLMSELKHVTGLE--NPNSVLQMRSWLKEH-GLEMESLGK 179 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 + L + +++ R + S++ K + A D R RG +FYGA+RTG Sbjct: 180 KEVAKELKTVG--KELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTG 237 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGK 374 R++G + Q QNLP+ + +++ E D S +R+ I G Sbjct: 238 RFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGF 297 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIG 432 K +VAD + IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K + R G Sbjct: 298 KFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKG 357 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K+ ELALGY G K M Sbjct: 358 KIAELALGYGGSVGALKAMG---------------------------------------- 377 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A+ L + + AWR + V LW D+ V E S+ +V Sbjct: 378 ALDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRT------HNIVFT 431 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQ 603 + I LPS R L Y + + + T + R +YG K ENI Q Sbjct: 432 YKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQ 491 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663 AI+RDIL M+ + Y IV VHDE + ET SV ++C LM + P WA+GL L Sbjct: 492 AIARDILLYAMQTLKE--YRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPWAEGLVL 547 Query: 664 KAEGYEAKRYRK 675 +A+GYE + Y+K Sbjct: 548 RADGYECEFYKK 559 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 100/709 (14%), Positives = 205/709 (28%), Gaps = 165/709 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ++ +D ET + + + + + Sbjct: 351 RVAVDTETTGLDEMV----------VDLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGL 400 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + L L D V+ + N ++ + + + T +++ Sbjct: 401 SEGQMPLEEAVAMLKDVLEDPAVLKIGQNMKYDAKILHRY---GVDVAPIDDTMLMSYAL 457 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ + K + GK+ + D+ PY A+ ++ W Sbjct: 458 HAGLHGHGMDTLSERYLDHTPIPIKPLLGSGKSAVTFDRVPIEDAVPYAAEDADITLRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q F ++ T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 518 QTFKPQLHQERVTT--VYETL------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L+ +I +L G + L LF G++ + T IL Sbjct: 570 MAGLEAEIHELA-GETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYSTGADILEDLATEH 628 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L+ S + L + ++ D GR+ + GAS TGR + QN+P Sbjct: 629 DLPRRVLDWRQLSKLKSTYTDALQDHINKDTGRVHTSYAQTGAS-TGRMASTDPNLQNIP 687 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G L+ D + IE R+LA Sbjct: 688 ------------------------VRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAH 723 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +AG + +AFA G+DI+ T ++ F P+++++ E R K + Sbjct: 724 MAGIETLQQAFAEGQDIHALTASEMFGVPLEEMTPEIRRQAKAIN--------------F 769 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 770 GVIYGISGF------------------------------GLARNLRIPRKDAQGFIDRYF 799 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + E + R++ Sbjct: 800 ERFPGIRKYMDSTVEFAKEHGY--------------------------VQTLFGRKIHT- 832 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + + R +Q + D++ M ++L Sbjct: 833 ---AEINAKGPKAGFAKRAAINAP------IQGTAADVIRRAMIRMPEAIAHLPARMLLQ 883 Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E P+ ++ +M A + L + K + Sbjct: 884 VHDELLFEVPEAAVEDTIAAAREVMENAADPAVHLDVKLVVDAGRGKNW 932 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 104/706 (14%), Positives = 200/706 (28%), Gaps = 169/706 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + D ET S + A I + A+D + Sbjct: 347 KRFAFDTETTSLD-------YRVA---QIVGFSVAFDAQDAYYVPLAHDYENAPAQLDRE 396 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + + + L DE+V + H+ ++ + + GI++ + T + + Sbjct: 397 QILAQIKPILEDESVQKIGHHLKYDAHVLENH-GIELKGW-YFDTMLASYVLNAVATRHG 454 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L+ + GK + + + Y D Sbjct: 455 MDDVSRLYLSHLTTTFEQVAGKGAKQ---------------KTFNQIEIETAAHYAAEDA 499 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 T LF+ L E + + + + G +DL + +L A Sbjct: 500 HVTYRLFEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANT 559 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L+ I +L G + + LF G+ + T +S+L + Sbjct: 560 MANLESQITELA-GQSFNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEKIDHP- 617 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +LIL+ S + L + +SD T + TGR S QN+P Sbjct: 618 -ITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQNIP- 675 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G+ L+ AD + IE R++A Sbjct: 676 -----------------------VREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHF 712 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ + AF +G+D++ T A+ ++ V+ +QR K + Sbjct: 713 SQDEALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQAKAVNF--------------G 758 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFSREESRGYIAKYFQ 788 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + + + RRL D Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628 + + A R Q + DI+ M K+ ++L V Sbjct: 823 IMASNKMIKQAA---ERAAINAPL------QGSAADIIKMAMIAVDQMLPKDQTKMLLQV 873 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E ++ + L +M +PL E + + + Sbjct: 874 HDELVFEVDESIADELASKLADVMQSVLQ--ISVPLLVEVGKGRNW 917 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 104/725 (14%), Positives = 203/725 (28%), Gaps = 183/725 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49 + +D ET S + A + + A Sbjct: 352 KCIALDTETDSLDSMR----------ANLVGISLALASGEACYIPLAHKTLVTTSAGQGD 401 Query: 50 ---------QSAM----------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + + L L + + + N ++ +F GI++ Sbjct: 402 LFSSEMETVGYELAKNQLNLTACLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460 Query: 91 KRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + T + + T ++ + L + GK Sbjct: 461 VAF-DTMLESYTLNSTGRHNMDDLSDRYLGHKTIEFEAIAGKGKNQL------------- 506 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIND 196 EY D + T +L + L + E L + I Sbjct: 507 --TFDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEIELPLVSVLSRIER 564 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253 G ID + + I + +L++++ G + + T L+ LF G+ + Sbjct: 565 NGVLIDPAKLKQQSSEIERRLAELEQEVH-SEAGSVFNLASTKQLQEILFEKLGLPILKK 623 Query: 254 -VDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQ 310 + T + +L + L++ S + L ++ GR+ + Sbjct: 624 TPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYH 683 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R IA Sbjct: 684 QAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFIA 718 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G K+V AD + IE R++A +A ++ +KAFA G+DI+ +T ++ F P+D+V+ EQR Sbjct: 719 RKGYKIVAADYSQIELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRR 778 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + L Y L + + + F + ++ + Sbjct: 779 NAKAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAA 833 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRL 549 E + L+G L + + + +A + + + Sbjct: 834 EKGYVETLLGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMI 884 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + R I+Q Sbjct: 885 GIDR-----------------------------------------------IIQ------ 891 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGY 668 + +++ VHDE+V E + + + M K +PL AE Sbjct: 892 --------HSDEIKMIMQVHDELVFEVREDKVEHYSALIKAEMEKAIQ--LSVPLIAEVG 941 Query: 669 EAKRY 673 + Sbjct: 942 IGDNW 946 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 188/701 (26%), Gaps = 155/701 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 S ID+ET S P +A I ++++ D Sbjct: 313 SIFAIDLETTSLNPF----------EAEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLA 362 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + L L D + + N ++ + ++ GI++ W T + + Sbjct: 363 HVLQALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEMEGI-WCDTMLASYLLNPNRSSHG 420 Query: 109 LKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 L L+ G K + Y C A+ Sbjct: 421 LNALAVELLDHKMISYADVAGSGKDQKNFAQVEVEKASIYSCEDADATWLLHKLFLPQIE 480 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + R LF + E L + + G ++DL L+ KL + +L+ +I Sbjct: 481 ESGMERLLF-------ELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELEREIF 533 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILN 280 + G + L LF + ++ T L LIL Sbjct: 534 QCA-GTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAEHEIGRLILQ 592 Query: 281 RLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + S + L + V S GR+ + + TGR S QN+P Sbjct: 593 YRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAV-TNTGRLSSSEPNLQNIP-------- 643 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G ++ AD + IE RVLA ++ + Sbjct: 644 ----------------IRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFC 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AFA EDI+ T A+ F V+ E R K + G Sbjct: 688 DAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTIN--------------FGVIYGQGP 733 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A + + + + +H G Sbjct: 734 F------------------------------SLAKELGVSTKVAKEFIDNYFDRHAGARV 763 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + RRL D+ Sbjct: 764 FLDGCVREAEAKGHVTTIL--------------------------GRRLPIPDINSTNGN 797 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633 + + + +Q + DI+ + M +++ VHDE+V Sbjct: 798 IRSFAQRN---------AINYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELV 848 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E P ++ L M + +PLK + + Sbjct: 849 FEVPLEEKLTMEKLVCHEMENALT--LRVPLKVDVNFGSNW 887 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 107/714 (14%), Positives = 211/714 (29%), Gaps = 168/714 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET + A + + A + S Sbjct: 356 VAVDTETTGLDEMK----------ADLVGISLAVEPGAACYIPLAHKAEAGSDDLFGSDT 405 Query: 54 PSD-----------LLQYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSV 98 ++ L L D ++ + N ++ +F++ G I + T + Sbjct: 406 LAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTML 465 Query: 99 LARTNGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN- 151 L+ + L+ S K + GK+ I D+ Y A+ Sbjct: 466 LSYALFAGQHGHGMDTLSERYLSHSPIPIKSLLGTGKSAITFDRVPIADAVAYAAEDADI 525 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 ++ W+LF + T +++ L ER L + + G ++D D + ++ Sbjct: 526 TLRLWKLFKPQLHQQRVTT--VYETL------ERPLSPVLAKMEMEGVKVDRDTLSRMSN 577 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267 AQ+ L+ +I +L G + L LF G++ + T IL Sbjct: 578 AFAQKMAALESEIHELA-GETFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADILED 636 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 +L+ S + L + + GR+ + GA+ TGR + Sbjct: 637 LATEHDLPARVLDWRQLSKLKSTYTDALQDHIHPETGRVHTSYVQTGAN-TGRLASTDPN 695 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R +A G L+ D + IE Sbjct: 696 LQNIP------------------------IRSEEGRRIREAFVAEEGNVLLALDYSQIEL 731 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA +AG D +AFA G+DI+ T ++ FN P+ +++ + R K + Sbjct: 732 RILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINF--------- 782 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A ++ + Sbjct: 783 -----GVIYGISGF------------------------------GLARNLRIPRAEAQGF 807 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + G+ + D + R Sbjct: 808 IDRYFERFPGIRRYMDDTVAFAKEHGY--------------------------VQTLFGR 841 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ + + R +Q + D++ M Sbjct: 842 KIHTP----EIAAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPEAIAHLPA 891 Query: 623 DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 ++L VHDE++ E P++ ++ +M A + L A+ + K + Sbjct: 892 RMLLQVHDELLFEVPESAAEDTIEAARKVMESAADPAVHLDVKLVADAGQGKNW 945 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 100/708 (14%), Positives = 202/708 (28%), Gaps = 174/708 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S + A + +++ ++ + Sbjct: 358 AFDTETDSLDYMV----------ANLIGLSFSVEEGEAAYVPVAHDYLDAPEQLDRDWVL 407 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 + L YL DET V N ++ + + I++ ++ T + + ++ + Sbjct: 408 AQLKPYLEDETKAKVGQNLKYDASVLARY-DIEMKGIKF-DTMLESYVYNSVAGKHNMDS 465 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + A + Y D + T Sbjct: 466 LALRYLQHNTISFEEIAGKGKKQL---------------TFNQIALEEAAPYAAEDADIT 510 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L D E L + + +G ID L+ I Q + Sbjct: 511 LRLHNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYIDDMLLSAQSLEIGQRLDE 570 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L+ ++ + L+ LF + + T + +L + Sbjct: 571 LETASFEVAGQEF-NMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALEYELP 629 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 630 KLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP--- 685 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ---------------------IRNKEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQ 724 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + ++AF+ G+DI+ T A+ I++V+ E R K + Sbjct: 725 DRALLEAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINF--------------GLI 770 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + ++ Sbjct: 771 YGMS------------------------------AFGLAKQIGISRGEAQDYMNVYFERY 800 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV+Q ++ + RRL Sbjct: 801 PGVMQYMEETRLLATEQGY--------------------------VETLYGRRLYLP--- 831 Query: 575 GDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + + N + R +Q + DI+ + M ++++ Sbjct: 832 -EINARNAIRRKAAERAAINAP------MQGTAADIIKKAMILVDNWIEAEGTGRVNLLM 884 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + ++ + +LM S +PL AE + Sbjct: 885 QVHDELVFEVKEDELEAITKQVTALMEAAVS--LDVPLIAESGFGDNW 930 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 218/582 (37%), Positives = 313/582 (53%), Gaps = 19/582 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL Y D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ ++ Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A S + ++ + + +K+ T C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 +Q G +L +RR K + I LPS R L Y Sbjct: 543 IQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCYPSA 579 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 195/707 (27%), Gaps = 170/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + + A + ++A + Sbjct: 334 FAFDTETTSLEYMK----------AQLVGMSFAVKAGEAAYLPIAHDYPGAPEQLSLEFV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V N +++ + G ++ ++ T + + + Sbjct: 384 MQKLGPILADENKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMD 441 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 442 SLALKYLGHKNISFEDIAGKGKKQL---------------TFNQIELEKAAPYAAEDADI 486 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G ID +++ + + + Sbjct: 487 TLRLHQVLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATHSQRLGERLL 546 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ ++ + L++ LF + + T + +L Sbjct: 547 ELEKEAFEIAGEPF-NLSSPKQLQVLLFEKLELPVIKKTPKGAPSTAEEVLQELAHDYPL 605 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +I+ S + L V+ + T + TGR S QN+P Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIP--- 662 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA++G K+V AD + IE R++A ++ Sbjct: 663 ---------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQ 701 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFANG D++ T A+ F +++V+ + R K + Sbjct: 702 DKGLLSAFANGLDVHSATAAEVFGVELEEVTSDMRRKAKAVNF--------------GLI 747 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + + Sbjct: 748 YGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFERF 777 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL+ + E A RRL ++ Sbjct: 778 PGVLEYMETTREKAAENGYVETIF--------------------------GRRLHLPEIN 811 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627 R +Q + DI+ + M + N +++ Sbjct: 812 ARNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVHAWVNQQAPNTVKLLMQ 862 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +C LM++ +PL E E + Sbjct: 863 VHDELVFEIKTECTEQYTKQICELMSQAAQ--LDVPLIVEADEGDNW 907 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 103/725 (14%), Positives = 203/725 (28%), Gaps = 183/725 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49 + +D ET S + A + + A + Sbjct: 352 KCIALDTETDSLDSM----------SANLVGVSLALANGEACYIPLVHKTLVTTSAEQGD 401 Query: 50 ---------QSAM----------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + + L L + + + N ++ +F GI++ Sbjct: 402 LFANEMETVGYELAKNQLNLTVCLAQLKPILENPEIKKIGQNIKYDLTVFANH-GINVQG 460 Query: 91 KRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + T + + T ++ + L + GK Sbjct: 461 VAF-DTMLESYTLNSTGRHNMDDLAERYLGHKTIEFEAIAGKGKNQL------------- 506 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIND 196 EY D + T +L + L + E L + I Sbjct: 507 --TFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEIELPLVSVLSRIER 564 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253 G ID + + I + +L++++ G + + T L+ LF G+ + Sbjct: 565 NGVLIDPAKLKQQSSEIERRLAELEQEVH-SEAGSVFNLASTKQLQEILFEKLGLPILKK 623 Query: 254 -VDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQ 310 + T + +L + L++ S + L ++ GR+ + Sbjct: 624 TPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMINAKTGRVHTSYH 683 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R IA Sbjct: 684 QAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFIA 718 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G K+V AD + IE R++A +A + +KAFA G+DI+ +T ++ F P+D+V+ EQR Sbjct: 719 RKGYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRR 778 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + L Y L + + + F + ++ + Sbjct: 779 NAKAINFGLIYGMS-----EFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAA 833 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRL 549 E + L+G L + + + +A + + + Sbjct: 834 EKGYVETLLGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKIAMI 884 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + R ++Q Sbjct: 885 GIDR-----------------------------------------------VIQ------ 891 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY 668 + +++ VHDE+V E + + + M K +PL AE Sbjct: 892 --------HSDEIKMIMQVHDELVFEVKEDKVEHYSAVIKAEMEKAIQ--LNVPLIAEVG 941 Query: 669 EAKRY 673 + Sbjct: 942 VGDNW 946 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 205/709 (28%), Gaps = 172/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA + ++A + + Sbjct: 339 FAFDTETTSLDYM----------QADLVGMSFAVEAGKAAYLPIGHDYLGAPEQLSKEMV 388 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N +++ + + G+++ ++ T + + + Sbjct: 389 FAKLGPLLADEQRPKVGQNLKYDKSVLARA-GLELNGIKF-DTMLESYVLNSVGTRHDMD 446 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + Y D + Sbjct: 447 SLALKYLGHKNISFEEIAGKGKNQL---------------TFNQIELDKAAPYAAEDADI 491 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G ID D++ K I + Sbjct: 492 TLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLD 551 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L G + L++ LF + + T + +L Sbjct: 552 ELEKEAHELA-GEAFNLSSPKQLQVILFEKHELPVIKKTPKGAPSTAEEVLQELAHDYPL 610 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LI+ S + L V++D + T + TGR S QN+P Sbjct: 611 PKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDPNLQNIP--- 667 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A+ G K+ AD + IE R++A ++ Sbjct: 668 ---------------------IRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQ 706 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA G D++ T A+ F + +V+ + R K + Sbjct: 707 DKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNF--------------GLI 752 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + + Sbjct: 753 YGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFERF 782 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL+ + E A + + RRL Sbjct: 783 PGVLEYMESTREKAAELGY--------------------------VETLFGRRLYLP--- 813 Query: 575 GDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + + N A+ + R +Q + DI+ + M N +++ Sbjct: 814 -EINARNGASRKAAERAAINAP------MQGTAADIIKKAMITVNAWVKAQPANTVRLLM 866 Query: 627 TVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 VHDE+V E + + +C LM++ A +PL E ++ Sbjct: 867 QVHDELVFEIKEECVGDYMQHICLLMSQAA--ALDVPLIVESDSGDNWQ 913 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 96/707 (13%), Positives = 191/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET + + A + + A + + Sbjct: 348 ISFDTETDALDAMR----------ARLVGISLAVEPGRAAYIPVGHDYPGAPAQLPMQQV 397 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L+D + + ++ + ++ G+ + T + + + Sbjct: 398 LDALRSVLQDPAKKKLGQHGKYDLHVLRRH-GVQVQGYH-DDTMLESFVLNSTATRHDMD 455 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L +S + GK Y D + Sbjct: 456 SLALRYLGYSTIKFEDVAGKGAKQ---------------IPFSQVGIDEASRYAAEDADI 500 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L P E L + +I G R+D D + + + ++ Sbjct: 501 TLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRRQSQDLSSRML 560 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 + +L G + L+ LF + T + L Sbjct: 561 AAQQKATELA-GRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEALEAIADQHEL 619 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L E V+ D GR+ + GA TGR S QN+P Sbjct: 620 PRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA-ATGRLSSSDPNLQNIP-- 676 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G +L+ AD + IE R++A ++ Sbjct: 677 ----------------------IRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHLS 714 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AF G D++ T A+ F +++V+ +R K + Sbjct: 715 EDPGLVRAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINF--------------GL 760 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + ++ Sbjct: 761 MYGMS------------------------------AFGLARNLGIDRGQAQDYVALYFSR 790 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + + + RRL +D+ Sbjct: 791 YPGVRDFMERMRQQARDQGY--------------------------VETLFGRRLYLNDI 824 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 L R +Q + DI+ M + + ++L Sbjct: 825 HARNQGLRAGA---ERAAINAP------MQGTAADIIKRAMVDVDQWLRDSGAPARMILQ 875 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V ET + + + M++ +PL + + Sbjct: 876 VHDELVFETESSFVEDLRLQVVERMSQAAK--LRVPLVVDTGVGNNW 920 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 112/702 (15%), Positives = 200/702 (28%), Gaps = 153/702 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQ-------SAMPSDL 57 D ET S PL +A + W + P + S L Sbjct: 335 DTETNSIDPL----------EADLVGIGCCWGEGPTALAYIPVGHTAGEQLSMETVLSAL 384 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L D+ V N+ ++R++ ++ G+ + + + +L + Sbjct: 385 KPILEDQQYPKVFQNAKYDRLVLRRA-GVSLTGV-VFDPMLASYVLNPENSHNLSDLALR 442 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + K + A +YC DV T L Sbjct: 443 YLELTTVSYTDLVPKG------------------KTIGEVAIAEVAQYCGSDVHTTYRLV 484 Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E + + + G RID + + + + + +++ Sbjct: 485 PLLKADLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKA 544 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLI 278 + L F G+D T + L D + Sbjct: 545 AYDAAGEEF-NLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSV 603 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + S ++ L + + GR+ + TGR S QN+P Sbjct: 604 VEYRTLSKLKSTYVDALPALIRPNTGRVHTDFNQA-ITTTGRLSSSNPNLQNIP------ 656 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 S +R + G +LV AD + IE R+LA ++ E Sbjct: 657 ------------------TRTAFSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEEPI 698 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IK + ED++ T F+ D+++ E+R + KV+ + Y GA F + Sbjct: 699 LIKTYREDEDVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARF-----AREM 753 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D+ + + + + MQ + + + G Sbjct: 754 DIHRLDAKTFIDRFNQRYPNVFEYLQQMQREAIAYGYVKTIAGRRRY------------- 800 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 ++ I L S R Sbjct: 801 --FNFTTRS--LQALKGTDPTK--------------------IDLSSLR----------- 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIV 633 N + L+R +Q S DI+ M + GY ++L VHDE++ Sbjct: 826 --TNGYDAGLLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDELI 877 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E P + + + M S A +PLK E K + Sbjct: 878 FEVPPDEWEELQPKIEQTMEDAVSLA--VPLKVEAQAGKNWM 917 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 109/710 (15%), Positives = 198/710 (27%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET S + A + + + + Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 MP S L L DE+++ + N ++ + + I T +++ Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + C L K G K+ I + Y A+ + W Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAVCYAAEDADVTFRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF R T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 518 KLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271 L+ +I L G + L LF G+ + T +L Sbjct: 570 MAGLEAEIHALAGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEG 628 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L E + GR+ + GA+ TGR + QN+ Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 688 P------------------------VRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF G DI+ T ++ FN P++ + R K + Sbjct: 724 HIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN-------------- 769 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + H+ RR+ Sbjct: 800 FERFPGIRGYMDETISFAKANG--------------------------HVETLFGRRINT 833 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626 + + R +Q + D++ M K ++L Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMPATMLL 883 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + ++ + +M P+ +PL E + Sbjct: 884 QVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 201/706 (28%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 + D ET S +P+ A I +++ T Q + Sbjct: 352 VAFDTETDSLEPM----------NARIVGLSFSVKPGVGYYIPLTHQDLTAEPQLPLAEV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L + D +A N+ ++ + + + + T + + P + Sbjct: 402 LAFLKPWFEDSDSPKIAQNAKYDLHVMANH-DVWVKGL-FEDTMLASYILEAHKPHGMDA 459 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 LN++ + GK +Y D E T Sbjct: 460 LALRWLNYNTIKYEEVAGKGASQ---------------ITFDQVPIDTATKYAAEDAEVT 504 Query: 171 RELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L D +L + + G ID D + IA + K Sbjct: 505 LRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQSAEIADKLKL 564 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275 ++E +L G + + LF G+ +V + T + +LS Sbjct: 565 IEEQAFELAGGSF-NLNSPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLSKLAEDYPLP 623 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + + + L V+ GR+ A TGR + QN+P Sbjct: 624 AKLLEHRSLAKLKSTYTDKLPRMVNARTGRVHTNYAQAVA-VTGRLASNDPNLQNIP--- 679 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR IA+ G LV AD + IE R++A I+G Sbjct: 680 ---------------------VRTAEGRRVREAFIAAPGCVLVSADYSQIELRIMAHISG 718 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ I AF G DI+ T ++ F +++V+ + R KV+ Sbjct: 719 DEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINF--------------GLI 764 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + A +L + A++ Sbjct: 765 YGMS------------------------------AFGLAGNLGITREAAKLYIDRYFARY 794 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + ++ D + RRL ++K Sbjct: 795 PGVAKFMDNVRAQAKE--------------------------DGFVQTVFGRRLWLPEIK 828 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTV 628 R +Q S D++ M K +++ V Sbjct: 829 SPNGPRRAGA---ERAAINAP------MQGTSADLIKMAMVELSAWLKAEKLNSKMIMQV 879 Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE++ E P + + +MT+ +PL+ + Sbjct: 880 HDEVIFEVPKGELELIQKRVPEIMTQVAK--LRVPLEVGCGVGNNW 923 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 184/700 (26%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S + A + ++A ++ + Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L YL D+ V N ++ + + I++ ++ T + + ++ + Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIKF-DTMLESYVYNSVAGKHNMDS 463 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + A + Y D + T Sbjct: 464 LALRYLQHNTISFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADIT 508 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L + E L + + +G ID L+ I Q + Sbjct: 509 LRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSLEIGQRLDE 568 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L++ ++ + L+ LF + + T + +L + Sbjct: 569 LEKAAFEVAGEEF-NMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLP 627 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 628 KLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP--- 683 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A +G K++ D + IE R++A ++ Sbjct: 684 ---------------------IRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQ 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AF+ G+DI+ T A+ I++V+ E R K + L Y Sbjct: 723 DKALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMS-----AFGLA 777 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + + FE + + + E + L G L Sbjct: 778 KQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHL--------- 828 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + Sbjct: 829 PEINARNGMRRKAAERAAINAPMQGTAADII----------------------------- 859 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 T G ++Q VHDE+V Sbjct: 860 -----KKAMILVDEWVETEGKDRVNLLMQ------------------------VHDELVF 890 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + V + LM + +PL AE + Sbjct: 891 EVKEDALDEVTTKVRELMEQAVQ--LDVPLVAEAGFGNNW 928 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 188/707 (26%), Gaps = 173/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A I +++ T + Sbjct: 367 VAVDTETTSLDEMR----------AQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEV 416 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L + + N ++R +F GI++ T + + + P L + Sbjct: 417 LARLKPWLENPARPKLGQNIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLAS 474 Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 S + GK I + EY D + Sbjct: 475 LAERHVGRSGINYEDLCGKGVHQIKFNQVDIARAA-----------------EYSCEDSD 517 Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T ++ + L P E I G ID ++ + + Q Sbjct: 518 QTLDVHRVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLL 577 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQLA 274 +L+ + ++ + L F G + T + +L Sbjct: 578 QLETEAYEMAGQPF-NLGSPKQLAEIFFDKLGMKVVKKTPSGARSTDEDVLEKLAEDHPL 636 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + S + L++ + GR+ A TGR S QN+P Sbjct: 637 PAKLLEHRSLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP-- 693 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR +A G + AD + IE R++A I+ Sbjct: 694 ----------------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHIS 731 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ + AF G D++ T A+ F +++VS EQ Sbjct: 732 GDESLLHAFTAGLDVHRATAAEVFGVALEQVSSEQ------------------------- 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + L A + A + + Sbjct: 767 -------------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDRYFQR 807 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + RRL+ ++ Sbjct: 808 YPGVKHYMDSTRQLAKEQGYVETVF--------------------------GRRLLLPEI 841 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 R +Q + D++ M K G +++ Sbjct: 842 NSPNGPRRAGA---ERAAINAP------MQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQ 892 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ V + LM +PL AE + Sbjct: 893 VHDELVFEVPEAEVEWVRTEIPRLMAGVAE--LKVPLLAEIGFGPNW 937 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 116/721 (16%), Positives = 201/721 (27%), Gaps = 185/721 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + D ET S A QA + + + + Sbjct: 407 YVSFDTETTSLD----------AMQAELVGVSLSTEPGKACYVPLGHVDGEGDLLGGGGL 456 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D +V+ +A N ++ ++ + GIDI + T +L+ T Sbjct: 457 VEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITP--FDDTMLLSYTV 513 Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + L+ K G K++I + Sbjct: 514 DAGKGGNGMDELSERWLDHKPIPFKEICGSGKSMITFDKVAIDKATA------------- 560 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVL 207 Y D + T L+ L P ER + + + RG +D ++ Sbjct: 561 ----YAAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLS 616 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKS 263 +L AQ + +I +L G + L LF G+ ++ T Sbjct: 617 RLSGEFAQGMAGKESEIYELA-GENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSAQ 675 Query: 264 ILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L I++ S + L ++ GR+ + A+ TGR S Sbjct: 676 VLEDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALA-ATTTGRLS 734 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA G KL+ AD Sbjct: 735 SSEPNLQNIP------------------------VRTEEGRKIRKAFIAEKGHKLISADY 770 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA +A KAF +G DI+ T ++ F TPI+ + R K + Sbjct: 771 SQIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINF---- 826 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A + + Sbjct: 827 ----------GIIYGIS------------------------------AFGLANQLGISRG 846 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ + + + Sbjct: 847 EAGDYIKTYFERFPGIKDYMEAIKKQVHANGYVTTIF----------------------- 883 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 R+ Y +V + Y +Q + DIL M Sbjct: 884 ---GRKAHYPEVNTKNPNMR---------AFYERAAINAPIQGSAADILRRAMVRMENRL 931 Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672 K ++L VHDE++ E PD ++ + +M P+ +PL+ + A Sbjct: 932 EGSKLDAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENACDPALKLSVPLQVDARAANN 991 Query: 673 Y 673 + Sbjct: 992 W 992 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 105/706 (14%), Positives = 199/706 (28%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D ET S + +A + ++A D+ + + Sbjct: 340 FAFDTETTSLNYI----------EAELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEV 389 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L E V N ++ + I++ + T + + + Sbjct: 390 LKQLKPLLESEKHKKVGQNLKYDMSVLANY-DIELAGIEF-DTMLESYCLNSVASRHDMD 447 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + Y D + Sbjct: 448 TLALHHLNHVNIKFEEIAGKGKNQL---------------TFDQIEVEQAAPYASEDADI 492 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L ++L P E L + + G +D L+L+ L + K Sbjct: 493 TMRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLK 552 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+++ ++ + L++ + G+ + T + +L + Sbjct: 553 ELEKEAYEIAGKEF-NLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEEVLQELALDYPL 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL S + L + GR+ + A TGR S QN+P Sbjct: 612 PKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIA-ATGRLSSTEPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R+ IA G K++ AD + IE R++A ++ Sbjct: 669 ----------------------IKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLS 706 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ +KAF G D++ T A+ F+ P+D+V+ QR K + L Sbjct: 707 QDEGLLKAFEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLI------------- 753 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ ++ + + + + A+ Sbjct: 754 -YGMSAFGLAKQIDTD------------------------------RNTAQDYINTYFAR 782 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + E A + + RRL ++ Sbjct: 783 YPGVETYMESTKEKAADLGY--------------------------VETLYGRRLYLPEI 816 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-----NGYDIVLTV 628 R +Q + DI+ M K G +++ V Sbjct: 817 HSKNGMRR---KAAERTAINAP------MQGSAADIIKLAMLEVDKWLKDVKGIKMIMQV 867 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E + + LM +PL A+ + Sbjct: 868 HDELVFEVEEDKLELAQKEIPKLMQSVAE--LSVPLIADVGVGDNW 911 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 105/710 (14%), Positives = 197/710 (27%), Gaps = 172/710 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET S L +A I ++A Sbjct: 315 KLFAFDTETTSLDYL----------EARIVGVSFAVKAGEAAYLPLNHDYPGAPDQLDFD 364 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 A+ +DL L D T + V N ++R + I++ T + + Sbjct: 365 AVMADLKPLLEDPTKLKVGQNLKYDRHVLLNH-DINLQGIA-HDTMLESYVLDSTATRHD 422 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L+ + GK + + Y D Sbjct: 423 MDSLAKKYLDRDTIHFEDIAGKGKKQL---------------TFNQIGLEEAAPYAAEDA 467 Query: 168 EATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L + L P + E L + T+ G ID+ ++ + +A + Sbjct: 468 DITLQLHETLWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQ 527 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271 +L++ + + L+ L+ + + + T + +L Sbjct: 528 IAELEKQAHESAGQTF-NLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDG 586 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +I+ S + L V+ GR+ + + TGR S QN+ Sbjct: 587 YELPQIIMQYRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAV-TATGRLSSSDPNLQNI 645 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +ASNG L+ AD + IE R++A Sbjct: 646 P------------------------IRSENGRRIREAFVASNGYTLLAADYSQIELRIMA 681 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G++ +KAFA GEDI+ T ++ F+ ++ VS +QR K + Sbjct: 682 HLSGDESLLKAFAAGEDIHRHTASEIFDIALEDVSSDQRRSAKAIN-------------- 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ + + + + + Sbjct: 728 FGLIYGMS------------------------------AHGLSKQLGIERHQAADYMQTY 757 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 ++ GV Q + E RRL Sbjct: 758 FDRYPGVRQYMDNTREQAKEQGYVETIF--------------------------GRRLYL 791 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624 ++ R +Q + DI+ M G + Sbjct: 792 PEINSSNGMRRQYA---ERTAINAP------MQGSAADIIKRAMIAIHSWLSEADTGIRM 842 Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ VHDE+V E P + M +PL+ + Sbjct: 843 IMQVHDELVFEVPLEQLDMAKDTIEKFMMGAAE--LKVPLEVGIGVGDNW 890 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 192/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 L +D ET P+ A + ++A+ + TE + Sbjct: 352 ILSLDTETTGTDPIR----------AELVGMSFAYAENQAFYVPVPADRTEAQRIVDKFK 401 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 + + V N ++ ++ G++I T + L + Sbjct: 402 PVFENPQTLKVGQNIKYDMLVLANY-GVEIQG-PMFDTMIAHYVLQPELHHGMDYLAEIY 459 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L++ + G K + + + Y Y D + T +L Sbjct: 460 LHYETIKIEELIGPKGKNQKNMRDLDPANIYR---------------YACEDADVTLKLK 504 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L D E L + + G RID + + + +++E++ Sbjct: 505 NVLEKELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEV 564 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 +L + + LF I D ++ T + +L + IL Sbjct: 565 HRLAGVEF-NIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKIL 623 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L + ++ G + + + TGR S QN+P Sbjct: 624 EHRGLKKLLGTYIDALPQLINPETGHIHTSFNQTV-TATGRLSSSNPNLQNIP------- 675 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I G + AD + IE R++A ++G+ Sbjct: 676 -----------------VRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHM 718 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +DI+ T AK + ++ V++EQR+ K G+ Sbjct: 719 IEAFRANQDIHAATAAKIYKEKLEDVTREQRSKAKTANF--------------GIIYGIS 764 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ + + + + + V Sbjct: 765 VFGLAER------------------------------LGIDRKEAKELIDGYFENYPHVK 794 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + I RR D+ + Sbjct: 795 EYMDSSIQAARQKGY--------------------------IETVFRRRRYLPDINSRNA 828 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + R +Q + DI+ M + ++L VHDE+ Sbjct: 829 VVRGYA---ERNAINAP------IQGSAADIIKVAMIRIYRRFREEGIRSKMILQVHDEL 879 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + + M + +PL A+ K + Sbjct: 880 NFSVVPEEKEKVQQIVIAEMESA--YKMKVPLLADCGWGKNW 919 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 101/717 (14%), Positives = 194/717 (27%), Gaps = 178/717 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QS 51 D ET A+QA + ++A T + Sbjct: 342 KLFAFDTETT----------GIDAQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRD 391 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNG 104 + L L D T + V ++ F+ + GI + + T + + Sbjct: 392 TVLLALKPLLEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAF-DTMLESYVLN 450 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + L++ + GK A + G Sbjct: 451 ATATRHDMDSLAKKYLDYDTVAFQDIAGKGAKQL---------------TFDQIALEQAG 495 Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L D E L + I +G +D DL+ Sbjct: 496 PYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQ 555 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL 265 + + +L+ ++ + L L+ G+ T + +L Sbjct: 556 SIELGNKMVELERQAFEIAGEEF-NLGSPKQLGAILYEKLGLPVLKKTGKGQASTAEEVL 614 Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +++ + S + L E ++ GR+ + A TGR S Sbjct: 615 AKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-ATGRLSSS 673 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R IA G K++ AD + Sbjct: 674 DPNLQNIP------------------------VRTAEGRRIRQAFIAPKGYKMLAADYSQ 709 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ ++ + AF + D++ T A+ F + V+ +QR K + Sbjct: 710 IELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINF------ 763 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 764 --------GLIYGMG------------------------------AQKLGKDIGVDTKTA 785 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A++ GV + + + + Sbjct: 786 KAYIDVYFARYPGVREYMERTRAQASDQGY--------------------------VETF 819 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL D+ + A R +Q + DI+ + M Sbjct: 820 FGRRLYLPDIHSNKPQERAAA---ERTAINAP------MQGTAADIIKKAMVLVDNWLTD 870 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + M+ +PL E + Sbjct: 871 SGLDAKVILQVHDELVLEVREDLVAEVSEKIREYMSAAAQ--LDVPLLVEVGVGDNW 925 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 109/710 (15%), Positives = 198/710 (27%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET S + A + + + + Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 MP S L L DE+++ + N ++ + + I T +++ Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + C L K G K+ I + Y A+ + W Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAVCYAAEDADVTFRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF R T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 518 KLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271 L+ +I L G + L LF G+ + T +L Sbjct: 570 MAGLEAEIHALAGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEG 628 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L E + GR+ + GA+ TGR + QN+ Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 688 P------------------------VRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF G DI+ T ++ FN P++ + R K + Sbjct: 724 HIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN-------------- 769 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + H+ RR+ Sbjct: 800 FERFPGIRGYMDETIAFAKANG--------------------------HVETLFGRRINT 833 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626 + + R +Q + D++ M K ++L Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMPATMLL 883 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + ++ + +M P+ +PL E + Sbjct: 884 QVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 199/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA + ++ ++ ++ Sbjct: 351 FAFDTETTSLNYM----------QAELVGMSFCIEEGEAAYLPLAHDYADAPEQLDRDSV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L D+ V + +++ + I++ + T + + + Sbjct: 401 LALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYVLDSVATRHDMD 458 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 459 SLAQHYLGLSTVHFEDIAGKGAKQL---------------TFNQIPLEQAAHYAAEDADI 503 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + + E L + + G ID + + + +A Sbjct: 504 TLRLHNHIWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVLIDSQKLGQQSQDLASRIL 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ ++ L + T L+ LF + + T + +L +T Sbjct: 564 QLENEVHILAGEEF-NLGSTKQLQEILFKKLDLPVLKKTPKGAPSTSEEVLQELALTYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ S + L + ++ GR+ + + TGR S QN+P Sbjct: 623 PKLLMEFRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQA-ITATGRLSSTEPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR I G K+V AD + IE R++A ++ Sbjct: 680 ----------------------IRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + +KAF+ G+DI+ T A+ FN +++V+ EQR K + Sbjct: 718 QDKGLLKAFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 764 IYGMS------------------------------AFGLSKQLNVSRQDAQHYMDLYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ +D RRL D+ Sbjct: 794 YPGVLKYMEDARVVAKEKGYVSTVF--------------------------GRRLYLPDI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 R +Q + DI+ + M + +++ Sbjct: 828 NASNGLRR---KGAERAAINAP------MQGTAADIIKKAMLKVDAWIDTLPNDQTRMIM 878 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E + S T+ LM K S +PL E + + Sbjct: 879 QVHDELIFEIKEQNVESDKNTIVDLMEKAVS--LDVPLIVEAGVGENW 924 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 104/710 (14%), Positives = 202/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + D ET S + QA + + A + Sbjct: 348 YVAFDTETTSLNEM----------QADLVGISLATAPGRACYIPVAHKDGAADDLFGSDA 397 Query: 52 ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + + L L D+ ++ + N ++ + GI + T +++ Sbjct: 398 RAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILAAH-GITVAP--IDDTMLMSYA 454 Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155 + LN S + G KA + ++ Y A+ ++ Sbjct: 455 LHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVPVAEAVKYAAEDADITLRL 514 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W R T +++ L ER L + + G +D D + + AQ Sbjct: 515 WLTLKPQLHRAQVTT--VYETL------ERPLVPVLARMERDGVLVDRDTLRAMSGKFAQ 566 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I L + L LF G+ + + T +L Sbjct: 567 KMAGLESEIHALARRSF-NVGSPKQLGEILFDEMGLPGGEKGKTGAYATGADVLEDLATE 625 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + + D GR+ + GAS TGR+S QN+ Sbjct: 626 HDLPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGAS-TGRFSSSDPNLQNI 684 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A+ G +LV D + IE R+LA Sbjct: 685 P------------------------VRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILA 720 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +AG + +AF +G DI+ T ++ FN P+ +++ E R K + Sbjct: 721 HVAGIETLKQAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAIN-------------- 766 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 767 FGVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRY 796 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ T + R++ Sbjct: 797 FERFPGIKDYMDATTAFAKEHGY--------------------------VQTLFGRKIHT 830 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + + R +Q + DI+ M ++L Sbjct: 831 P----EIAAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPEAIEGLPCKMLL 880 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + + + +M P+ +PL + + + + Sbjct: 881 QVHDELIFEVAEDSVDRLIDVARAVMQGAADPAVRLDVPLVVDAGQGRNW 930 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 113/708 (15%), Positives = 203/708 (28%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET S L A I A+A A+ Sbjct: 351 FAFDLETDSLDTL----------SANIVGLAFAVAPGEAAYLPVAHDYLDAPDQLDRAAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N ++R + K I++ ++ T + + + Sbjct: 401 LAQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKY-DTMLESYCLNSVGGKHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 459 SLAARWLNHKTVTFEEIAGKGKNQL---------------TFNQIAIEQAGHYAAEDADV 503 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + + G ID +++ K + + Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLA 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ L + T L+ LF GI + T + +L+ + Sbjct: 564 ELEQQAHDLAGEPF-NLSSTKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPVTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA K++V AD + IE R++A ++ Sbjct: 680 ----------------------VRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA GEDI+ T ++ F + KVS EQR K + Sbjct: 718 QDKGLLAAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 764 IYGMS------------------------------AFGLSRQLNIGAGEAKKYMDLYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ ++ E A + RRL D+ Sbjct: 794 YPGVLRYMEETREQAAAKGY--------------------------VETLDGRRLWLPDI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ M + +++ Sbjct: 828 TSSNAIRR---KAAERAAINAP------MQGTAADIIKRAMIAVDGWLLEQKDDKVKMIM 878 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E S + LM + +PL E + + Sbjct: 879 QVHDELVFEIHQDAVASASDKIRQLMEGSMK--LDVPLLVEVGTGENW 924 >gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 196/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 334 FAFDTETTSLDYMK----------AQLVGMSFAVKAGEAVYLPLAHDYPGAPEQLSLEFV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V N +++ + G + ++ T + + + Sbjct: 384 MQKLGPILADENKAKVGQNLKYDKSVLANA-GFALNGIKF-DTMLESYVFNSVGTRHDMD 441 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 442 SLALKYLGHKNISFEDIAGKGKKQL---------------TFNQIELEKAAPYAAEDADI 486 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P D E L + I G ID +++ + + Sbjct: 487 TLRLHEVLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLI 546 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+++ ++ + L++ LF G+ + + T + +L Sbjct: 547 ELEKEAFEIAGEPF-NLSSPKQLQVLLFEKLGLPIIKKTPKGAPSTAEEVLQELAHDYPL 605 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ S + L V+ R+ + + TGR S QN+P Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQA-ITATGRLSSTDPNLQNIP-- 662 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA++G K+V AD + IE R++A ++ Sbjct: 663 ----------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS 700 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFANG D++ T A+ F +D V+ + R K + Sbjct: 701 QDKGLLNAFANGLDVHSATAAEVFGVELDDVTTDMRRKAKAVNF--------------GL 746 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 747 IYGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFER 776 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 GVL+ + E A RRL ++ Sbjct: 777 FPGVLEYMETTREKAAENGYVETIF--------------------------GRRLHLPEI 810 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 R +Q + DI+ + M + + N +++ Sbjct: 811 NARNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVNRWVHEQAPNTIKLLM 861 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +C LM++ A +PL E E + Sbjct: 862 QVHDELVFEIKTDCAPEYTKHICELMSQAA--ALDVPLIVEADEGDNW 907 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 109/710 (15%), Positives = 198/710 (27%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET S + A + + + + Sbjct: 351 HVAIDTETTSLDEMR----------AELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL 400 Query: 51 --SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 MP S L L DE+++ + N ++ + + I T +++ Sbjct: 401 VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARH---GIRVAPIDDTMLMSYAM 457 Query: 104 GLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + C L K G K+ I + Y A+ + W Sbjct: 458 HAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVEQAVCYAAEDADVTFRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF R T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 518 KLFKPQLHRARVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271 L+ +I L G + L LF G+ + T +L Sbjct: 570 MAGLEAEIHALAGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNGAWGTGADVLEDLAAEG 628 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L E + GR+ + GA+ TGR + QN+ Sbjct: 629 HDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 688 P------------------------VRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF G DI+ T ++ FN P++ + R K + Sbjct: 724 HIADIPALKQAFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAIN-------------- 769 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 770 FGVIYGISGF------------------------------GLARNLRIPRADAQGFIDRY 799 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + H+ RR+ Sbjct: 800 FERFPGIRGYMDETIAFAKANG--------------------------HVETLFGRRINT 833 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626 + + R +Q + D++ M K ++L Sbjct: 834 P----EINAKGPGAGFARRAAINAP------IQGTAADVIRRAMIRMPKAIRGMPATMLL 883 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + ++ + +M P+ +PL E + Sbjct: 884 QVHDELLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNW 933 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 207/708 (29%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 +D ET S + +A + ++A + Sbjct: 356 FAVDTETTSLNYM----------EAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQLNQAEA 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L + + V N ++ + +GI + + T + + ++ Sbjct: 406 LAKLKPLLENPEIKKVGQNLKYDMSILAN-VGIKLQGIAF-DTMLESYVFNSVASKHNMD 463 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + ++ Y D + Sbjct: 464 DLALKYLGHKNISFEEIAGKGAKQL---------------TFNQISLEVAAPYAAEDADI 508 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + +G ID L+ + E +A+ Sbjct: 509 TLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTID 568 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L++ ++ G + L++ F G + + T + +L + Sbjct: 569 ELEQKAYEIA-GESFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPSTAEEVLVELALDYPL 627 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 628 PKIILQHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 684 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A ++ Sbjct: 685 ----------------------IRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLS 722 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F+ +V+ EQR K + Sbjct: 723 QDKGLLTAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVN--------------FGL 768 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 769 IYGMS------------------------------AFGLARQLDIPRGEAQKYIDTYFKR 798 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL ++ A + + RRL + Sbjct: 799 YPGVLNYMEETRAIAADLGY--------------------------VSTLYGRRLYLPAI 832 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K + A R +Q + DI+ + M N +++ Sbjct: 833 KDRNAMRRQAA---ERAAINAP------MQGTAADIIKKAMINVADWIANETDGEITLIM 883 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ +C LM + + L AE + Sbjct: 884 QVHDELVFEVDSDKAEALQEKVCQLMAEAAD--LDVELLAEAGLGDNW 929 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 104/709 (14%), Positives = 186/709 (26%), Gaps = 174/709 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------- 50 D ET S P+ A + ++A + + Sbjct: 361 AFDTETTSLDPMA----------ARLVGMSFAVEPGEAAYLPLAHRGAAQLPEAPEQLPL 410 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSS 108 + L + + + N ++ + GI + T + + Sbjct: 411 DEVLDRLRPWFESDRHAKLGQNLKYDAHVLANH-GIALRGIA-HDTLLESYVLESDKAHD 468 Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L + GK EY D Sbjct: 469 MDSLAKRHLGLATIPYTEVCGKGAKQIG---------------FDEVDVARATEYAAEDA 513 Query: 168 EATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + L P + E + + Q + G ID L+ + E + + Sbjct: 514 DVTLRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRR 573 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 L+ + L + L LF G+ +V + T + +L Sbjct: 574 LYTLEGEAHALAGQPF-NLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLEKLAEDY 632 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L S + L V+ GR+ + A TGR S QN+P Sbjct: 633 PLPKLLLEHRGLSKLKSTYADKLPRMVNPRTGRVHTSFSQATA-VTGRLSSSEPNLQNIP 691 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R+ IA +V AD + IE R++A Sbjct: 692 ------------------------IRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAH 727 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + ++AFA GED++ T + F +V+ EQ Sbjct: 728 LSDDARLLEAFARGEDVHRATAGEVFGVAPAEVTSEQ----------------------- 764 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + + L A + A + + Sbjct: 765 ---------------------RRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWIDRYF 803 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ GV + RRL Sbjct: 804 ARYPGVAEYMDRTRAEAREQGYVETVF--------------------------GRRLYLP 837 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 D++ + R +Q + D++ + M +V Sbjct: 838 DIRASQAGRRAGA---ERAAINAP------MQGTAADLIKKAMIATDAWLASCGLKSKLV 888 Query: 626 LTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E P +V L LM + +PL E + Sbjct: 889 LQVHDELVLEVPGAELETVREELPRLMGGVAT--LKVPLLVEVGAGDNW 935 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 97/703 (13%), Positives = 186/703 (26%), Gaps = 165/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQS---AMPSDL 57 L +D ET S + A + ++A + + + + Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 + ++ V N ++ + + GI++ K W T + L ++ Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLRNY-GIELKGKMW-DTMIAHYLIQPELHHNMDYMAEI 456 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LN+ + G K + + EY D + T L Sbjct: 457 YLNYQTIHIEELIGPKGKNQKSMRS---------------LPPSQVYEYAAEDADITLRL 501 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +L P E L + + G +D + + + +++ Sbjct: 502 KNKLEPELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEAR 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L I Sbjct: 562 IYELA-GEQFNIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADI 620 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ G + + + TGR S QN+P Sbjct: 621 LEHRGLKKLIGTYIDALPKLINPKTGHIHTSFNQT-ITATGRLSSSDPNLQNIP------ 673 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 G +R I G AD + IE RV+A ++ + Sbjct: 674 ------------------IRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAE 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IK F+ G+D++ T A + PI++V++++R K + Y L Sbjct: 716 MIKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIY-----GITVFGLAERL 770 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D + +++ + V Sbjct: 771 D---------------------------------------IPRDEAKMLIDGYFDTFPQV 791 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + E RR D+ Sbjct: 792 HDYMEKSKEVAREKGYVTTLF--------------------------GRRRYLPDINSHN 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + T R +Q + DI+ M ++L VHDE Sbjct: 826 A---TVRGFAERNAINAP------IQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDE 876 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL A+ K + Sbjct: 877 LNFSVYPDEKEKVEGIVLQEMQNA--LNLSVPLVADSGFGKNW 917 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 196/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET + L A I ++A A+ Sbjct: 351 FAFDLETDALDTL----------SANIVGISFAIAPGEAAYLPVAHDYLDAPEQLDRAAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D++ V N ++R + K I++ ++ T + + + Sbjct: 401 LAQLKPLLEDDSAWKVGQNLKYDRGVLKNY-DIELAGIKF-DTMLESYILNSVVGKHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + Y D + Sbjct: 459 SLAARWLNHKTVTFQEIAGKGKNQL---------------TFNQIALEQASHYAAEDADV 503 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + + Sbjct: 504 TLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQAILAQHSKELTARLA 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + T L++ LF GI + T + +L+ + Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTSYHQAV-TATGRLSSADPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A+ G ++V AD + IE R++A ++ Sbjct: 680 ----------------------VRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA GEDI+ T ++ F P+DKVS EQR K + L Y Sbjct: 718 QDKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMS-----AFGL 772 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ FE + + + + + G L Sbjct: 773 SRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASKGYVETIEGRRLWL-------- 824 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + R ++ D Sbjct: 825 -PDIKSSNAIRRKAAERAAINAPMQGTAADII-------------------KRAMIAVDA 864 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + N+ M + VHDE+V Sbjct: 865 WLEQQNDNSVR-----------------------------MI----------MQVHDELV 885 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + + +LM + +PL E + Sbjct: 886 FEVKAEAVEAASQKIRALMEGSVQ--LDVPLLVEVGVGDNW 924 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 199/716 (27%), Gaps = 178/716 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 A + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 542 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 +AQ +++I L L LF G+ ++ T +L Sbjct: 603 DLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 661 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 I++ + + L ++ + T ++ TGR S Sbjct: 662 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 721 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G KL+ AD + IE Sbjct: 722 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 757 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 758 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 808 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 809 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 833 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + G+ + R Sbjct: 834 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 867 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R Y D++ + R +Q + DI+ M Sbjct: 868 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 918 Query: 621 GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 919 AARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 111/691 (16%), Positives = 200/691 (28%), Gaps = 129/691 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAM-----PSDL 57 D ET + P A + W P + + L Sbjct: 395 DTETTALSP----------RDAQLVGIGCCWGPAPDQIAYLPLGHSQGGNLDLTLALEQL 444 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L D N+ ++R++ K G+ + T + + +L + Sbjct: 445 RPLLEDARYPKAFQNTKYDRLVLK-FQGVHLQGV-VFDTMLASYVLNPEGSHNLTDLSRK 502 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L+ + K D + + F K + Sbjct: 503 YLDITAQSYTDLVEKGQN------LADLSVEAIANYCGLDVYATFQLVPKLRADLLDANP 556 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L L E+ L + + G RID D + +L + + Q+ L+E G + Sbjct: 557 KLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAY-GLAGETFN 615 Query: 235 SRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L LF +D+ + T + L DLIL + Sbjct: 616 LGSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHRTLAKLKS 675 Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V SD GR+ + TGR S QN+P Sbjct: 676 TYVDALPNLVRSDTGRVHTDFNQA-ITATGRLSSSNPNLQNIP----------------- 717 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R I G LV AD + IE R+LA ++ E ++A+ +D+ Sbjct: 718 -------IRTEFSRQIRKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLVEAYQQHQDV 770 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T + ++ E+R + K++ + Y GA + A G+ Sbjct: 771 HKLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGA---QRFARESGVSF--KQAKGFI 823 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +E + + M+ Q + L+G Sbjct: 824 DRFYERYPLVFRYLKQMEGQAIALGYVETLLGRRRYFSFD-------------------- 863 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 R + + P +++ ++ + Sbjct: 864 -----------------------SRELQQLRGKDPD----SLAELDLSQLKVSQYDRGQL 896 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 R +Q S DI+ M + ++L VHDE+V E P + + + Sbjct: 897 RAAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQVHDELVFEMPPSEWEPL 950 Query: 645 GTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 +L M + +PL AE + + Sbjct: 951 RSLIQATMAEAVP--LSIPLLAEIHAGPNWM 979 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 310 FAFDTETDSLDYMV----------ANLVGLSFAVAEGEAAYVPVGHDYLDAPQQLDRDWV 359 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 + L L + + V N ++ + + GI + T + + + Sbjct: 360 LAQLKPLLENPQLAKVGQNLKYDASVVARY-GITMRGIA-HDTMLASYVYNSVGGKQDMD 417 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 418 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIDLEQAAPYAAEDADV 462 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL L + E L + + G ID L+ + IAQ Sbjct: 463 TLRLHHRLQALLEADAPLFGVYRDIEVPLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLV 522 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ +L D + L+ LF + + T + +L + Sbjct: 523 ELERKAYELADQEF-NLSSPKQLQTILFEQMKLPVVKKTPSGTPSTNEEVLQELALDYPL 581 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L + ++ GR+ + + TGR S QN+P Sbjct: 582 PAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 638 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K++ D + IE R++A ++ Sbjct: 639 ----------------------IRNQEGRRIRQAFIAPSGWKIMAVDYSQIELRIMAHLS 676 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ ID+V+ EQR K + Sbjct: 677 GDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNF--------------GL 722 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + + Sbjct: 723 IYGMS------------------------------AFGLAKQLGIPRSEAQHYMDKYFER 752 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GVL+ ++ A + RRL ++ Sbjct: 753 YPGVLRYMEETRSMAAEQGY--------------------------VETLFGRRLHLPEI 786 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 787 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDNWIETEGQGRVKLLM 837 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E ++ + + LM +PL A+ + Sbjct: 838 QVHDELVFEVQESALSEIESKVQELMESAAQ--LNVPLVADAGHGNNW 883 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 115/702 (16%), Positives = 194/702 (27%), Gaps = 152/702 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S D R+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F T + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + G + +A + + + R + L Sbjct: 827 -PDIHNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASLW--------- 876 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 D L +++ VHDE+ Sbjct: 877 -----------------------------------DCLK----------SKLIMQVHDEL 891 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E P+ V L +M K +PL AE + Sbjct: 892 VLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGAGMNW 933 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 184/700 (26%), Gaps = 158/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S + A + ++A ++ + Sbjct: 356 AFDTETDSLDYMV----------ANLIGLSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVL 405 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L YL D+ V N ++ + + I++ ++ T + + ++ + Sbjct: 406 EQLKPYLEDDNKAKVGQNLKYDASVLARY-DIEMKGIKF-DTMLESYVYNSVAGKHNMDS 463 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + A + Y D + T Sbjct: 464 LALRYLQHNTISFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADIT 508 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L + E L + + +G ID L+ I Q + Sbjct: 509 LRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDDMLLSAQSVEIGQRLDE 568 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L++ ++ + L+ LF + + T + +L + Sbjct: 569 LEKAAFEVAGEEF-NMNSPKQLQTILFEKMELPVIKKTPSGAASTNEEVLQELALDYPLP 627 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 628 KLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP--- 683 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A +G K++ D + IE R++A ++ Sbjct: 684 ---------------------IRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQ 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AF+ G+DI+ T A+ I++V+ E R K + L Y Sbjct: 723 DKALLAAFSAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMS-----AFGLA 777 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + + FE + + + E + L G L Sbjct: 778 KQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHL--------- 828 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + Sbjct: 829 PEINARNGMRRKAAERAAINAPMQGTAADII----------------------------- 859 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 T G ++Q VHDE+V Sbjct: 860 -----KKAMILVDEWVETEGKDRVNLLMQ------------------------VHDELVF 890 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + V + LM + +PL AE + Sbjct: 891 EVKEDALDEVTTKVRELMEQAAQ--LDVPLVAEAGFGNNW 928 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 111/708 (15%), Positives = 201/708 (28%), Gaps = 170/708 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------A 52 ID ET S + A + + + ++ A Sbjct: 327 KFFSIDTETNSLNTMK----------AELVGISLCINPGRACYIPLCHKNSSVDQLSLAA 376 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLK 110 + DL L D ++ + N ++ +F GI+I T +++ + Sbjct: 377 VLEDLKPILEDSSIKKLGQNLKYDAHIFLNY-GIEINGIS-DDTMLMSYVIESNQNHGMD 434 Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + + GK + + + Y D + Sbjct: 435 KLSAKYLGHNCKSYESLVGKGVNQL---------------TFDQVSVEDAVPYAAEDADV 479 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L+ + D E I G ID ++ ++I ++ Sbjct: 480 TLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKLL 539 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 L+E L + L+ LF I + T + +LS + Sbjct: 540 LLEEKAFDLAGQPF-NLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEVLSELALNYPL 598 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + + L + ++ GR+ + A TGR + QN+P Sbjct: 599 PKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYNQAIA-ITGRLASSDPNLQNIP-- 655 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + VR IA +G K++ AD + IE R++A ++ Sbjct: 656 ----------------------IRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLS 693 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF N EDI+ T + FN VS EQR KV Sbjct: 694 KDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKV--------------INFGL 739 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + A + A + + + +K Sbjct: 740 IYGMGVY------------------------------GLAKNLNIERAAAQNYIERYFSK 769 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V + +D + + RRL ++ Sbjct: 770 YPSVREYMEDTKQDARKNGY--------------------------VETHFGRRLWVPEI 803 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVL 626 G R G +Q + D++ M +++ Sbjct: 804 NGSNGMQRAGA---ERAAINGP------MQGTAADLIKMAMVGVKTWLDGQRHLKGKMIM 854 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E PDT + +M +PL + E K + Sbjct: 855 QVHDELVFEVPDTEVTEFKENIKRIMENVAQ--MDVPLIVDLGEGKNW 900 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 193/701 (27%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D+ET + + +A I ++A + + Sbjct: 327 FAFDLETNNLDYI----------EAEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQV 376 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + L L D V N F+ + GI++ R + + + ++ Sbjct: 377 LARLKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIR-HDSMLESYVLDSTATRHNMD 434 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + +M GK + + Y D + Sbjct: 435 SLALKYLQRTTITYEMVAGKGAKQL---------------PFNQVTIEKAAPYAAEDADI 479 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + +L P + E L + + G +++ + + + +A K Sbjct: 480 SLQLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLK 539 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L G + ++ L+ + T +++L + Sbjct: 540 RLEQEAFELA-GESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQELALDYPL 598 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L S + L V+ GR+ + + TGR S QN+P Sbjct: 599 PQLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 655 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +LV AD + IE R++A ++ Sbjct: 656 ----------------------IRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLS 693 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AF EDI+ T + F TP++ V+ EQR K + L Y A Sbjct: 694 EDEGLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAH-----GL 748 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + + F+ + +++ + Q + + L G L Sbjct: 749 GRQLGINRTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYL-------- 800 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + Sbjct: 801 -PEIHSRQTQRRNQAERTAINAPMQGSA-------------------------------A 828 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + A L ++ M + VHDE+V Sbjct: 829 DIIKRAMIHADRWLQEQKANAR------------------MI----------MQVHDELV 860 Query: 634 SETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + ++ + M +PL E + Sbjct: 861 FEVAEDKLEATIRAIRENMAAAAQ--LKVPLIVEIGSGTNW 899 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 108/728 (14%), Positives = 204/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET S + A + ++ + T + + Sbjct: 356 KLVAVDTETDSLDSM----------SANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEPTEAETITSFELAKNQLNLTACVTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELAERYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P D E L + Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G I+ + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIEPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I + G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FITNKGYKIVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 E + L G L + + + +A + V Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEERVEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA + ++A + Sbjct: 334 FAFDTETTSLDYM----------QAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQLSLEFV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D V N +++ + G + ++ T + + + Sbjct: 384 MQKLGPILADAKKAKVGQNLKYDKSVLANA-GYQLNGIKF-DTMLESYVLNSVGTRHDMD 441 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + G Y D + Sbjct: 442 SLALKFLGHKNISFEDIAGKGKKQL---------------TFNQVELDKAGPYAAEDADI 486 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P D E L + I G ID ++ + + + Sbjct: 487 TLRLHQVLWPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLL 546 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+++ ++ + L++ LF + + + T + +L Sbjct: 547 ELEKEAYEIAGEPF-NLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPL 605 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ S + L V+ R+ + + TGR S QN+P Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 662 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA++G K+V AD + IE R++A ++ Sbjct: 663 ----------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS 700 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFANG D++ T A+ F +++V+ + R K + Sbjct: 701 QDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNF--------------GL 746 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 747 IYGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFER 776 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 GVL+ + E A RRL ++ Sbjct: 777 FPGVLEYMETTREKAAESGYVETIF--------------------------GRRLYLPEI 810 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-------DIVL 626 K R +Q + DI+ + M + Y +++ Sbjct: 811 KAQNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVHSWVYEQAPNTVKLLM 861 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + +C LM++ + +PL E E + Sbjct: 862 QVHDELVFEIKTDCVDAYTKHICELMSQAAT--LDVPLIVEADEGDNW 907 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 96/700 (13%), Positives = 196/700 (28%), Gaps = 163/700 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 L +D ET S P+ A + ++++ + +E + Sbjct: 362 LSLDTETTSTDPIR----------AELVGMSFSYAENQAFYVPVPADRSEAQKIVDRFRP 411 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 + +M V N ++ ++ G+ + T V L ++ L Sbjct: 412 VFENREIMKVGQNIKYDMLVLANY-GVQLQG-PLFDTMVAHYVLQPELRHNMDYLAEIYL 469 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ + G + EY D + T +L + Sbjct: 470 NYQTIHIEELIGPKGKNQG--------------NMRDLPPASVYEYACEDADVTLKLKNK 515 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L D E L + + G RID + + + K+++E++ + Sbjct: 516 LEKELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQ 575 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 L + + LF I + ++ T + +L IL Sbjct: 576 LAGTEF-NIASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEH 634 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 635 RGLKKLLGTYIDALPQLINPETGRIHTSFNQTV-TATGRLSSSNPNLQNIP--------- 684 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I +G AD + IE R++A ++G+ I+ Sbjct: 685 ---------------IRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIE 729 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF G+DI+ T +K + P+++V++EQR+ K + Y G+ + Sbjct: 730 AFQKGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIY--------------GISVF 775 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 ++ + + + + + V + Sbjct: 776 GLAERLNVD------------------------------RKEAKELIDGYFENYPHVKEY 805 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + I R+ D+ + + Sbjct: 806 MDESIRIARERGY--------------------------IETIFKRKRYLPDINSRNAVV 839 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 R +Q + DI+ M + ++L VHDE+ Sbjct: 840 RGYA---ERNAINAP------IQGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNF 890 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + PL A+ + + Sbjct: 891 SVLPEEQEKVKQIVIEEMESA--YKMKAPLLADSGWGQNW 928 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 199/716 (27%), Gaps = 178/716 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 A + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 542 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 +AQ +++I L L LF G+ ++ T +L Sbjct: 603 DLAQAAAAYEDEIYALAGEKFT-ISSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 661 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 I++ + + L ++ + T ++ TGR S Sbjct: 662 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 721 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G KL+ AD + IE Sbjct: 722 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 757 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 758 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 808 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 809 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 833 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + G+ + R Sbjct: 834 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 867 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R Y D++ + R +Q + DI+ M Sbjct: 868 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 918 Query: 621 GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 919 AARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 118/716 (16%), Positives = 196/716 (27%), Gaps = 178/716 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A Sbjct: 413 LAFDTETNSLDPM----------QADLVGVSLALSPNEACYIPLAHTGAGDGLFSEGQLP 462 Query: 51 SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 +P + L L D+ + V HN +++++ + GID+ + CT ++ Sbjct: 463 GQIPVRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAP--FDCTMCMSYALDA 519 Query: 105 --LPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L L GK A + Sbjct: 520 GKNGHGMDELSVLHLGHQPIAFSEVTGKG---------------KGKVTFDKVALEPATH 564 Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P E R L + + RG ID ++ +L Sbjct: 565 YAAEDADVTLRLWQVLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSS 624 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILS 266 AQ +++++I +L G + + LF G+ + ++ Sbjct: 625 EFAQGAARIEDEIAELA-GERLNVGSPKQMGDILFGKMGLPGGTKTATGMWSTKATALEE 683 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL S + L V+ R T A+ TGR S Sbjct: 684 LAEAGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAATTTGRLSSSDPN 743 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R +A G LV AD + IE Sbjct: 744 LQNIP------------------------IRTEEGRRIRRAFVAEEGNLLVSADYSQIEL 779 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA IA AF G DI+ T ++ FN P+ + E R K + Sbjct: 780 RLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINF--------- 830 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 831 -----GIIYGIS------------------------------AFGLANQLGIPREEAGQY 855 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + + G+ ++ + R Sbjct: 856 IKRYFERFPGIRDYMEETKTFCREHGY--------------------------VETLFGR 889 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KN 620 R Y ++ + R Q + DI+ M K Sbjct: 890 RCHYPEIAAKNPSIRAF---NERAAINARL------QGTAADIIRRAMIRMEPALEKAKL 940 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK--NPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ + + M P+ A +PLK + AK + Sbjct: 941 SARMLLQVHDELVFEVPEGEADATIPVVRQCMETASAPAVALAVPLKVDARAAKNW 996 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 104/722 (14%), Positives = 204/722 (28%), Gaps = 182/722 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET + P+ A + ++A + + Sbjct: 356 IAVDTETDALDPMR----------ANLVGISFALTNGEACYIPLAHKQAVKEMTQTDLFT 405 Query: 51 ------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + L L + ++ + N ++ +F I + Sbjct: 406 ESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHH-IQLNGVC 464 Query: 93 WICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + T + + ++ L + GK Sbjct: 465 F-DTMLQSYVLDSTGRHNMGALSERYLGHQVIEFESIAGKGKKQ---------------V 508 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRG 198 A EY D + T +L + L D E L + T+ G Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTMERNG 568 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----V 254 ID +LK E IA+ L++ + + + T L+ LF + + Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAGAEF-NLASTKQLQEILFTKLALPIIAKTP 627 Query: 255 DMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 + T + +L + L++ + + L V+ GR+ + Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P C+R IA Sbjct: 688 V-TATGRLSSSDPNLQNIP------------------------IKNEEGRCIRQAFIARK 722 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G K++ AD + IE R++A ++ ++ I AF G+DI+ +T A+ F P+++V+ EQR Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + L Y + L + + + F+ + ++ + ++++ E Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + L G L + +G V Sbjct: 838 GYVETLFGRRLYL---------PEINSSNAIRRKGAERVAINAPMQGTAADII------- 881 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 +L + + N +Q Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAK 671 +++ VHDE+V E + + SLM +PL + Sbjct: 899 -----------MIMQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945 Query: 672 RY 673 + Sbjct: 946 NW 947 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 195/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 + ID ET S + +A + ++A + Sbjct: 340 IAIDTETTSLNYM----------EAKLVGISFAIEAGKAAYLPLGHDYLDAPKQLDQAEA 389 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L + + V N ++ +F +GI + + T + + ++ Sbjct: 390 LAKLKPLLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMD 447 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + ++ Y D + Sbjct: 448 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQIDLEIAAPYAAEDADI 492 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G ID ++ + E +A+ Sbjct: 493 TLRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTID 552 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L++ ++ + L+ F G + + T + +L + Sbjct: 553 ELEQKAFEIAGEKF-NLSSPKQLQALFFEKLGYPIIKKTPKGAPSTAEDVLVELALDYPL 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V++ GR+ + A TGR S QN+P Sbjct: 612 PKIILQHRSLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANA-ATGRLSSSEPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA GKK++ AD + IE R++A ++ Sbjct: 669 ----------------------IRTEEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLS 706 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F+ D+V+ EQR K + L Y Sbjct: 707 QDKGLLTAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMS-----AFGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + + + + + L G L Sbjct: 762 AKQLDISRPEAQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYL-------- 813 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + Sbjct: 814 -PAIKDRNAMRRQAAERAAINAPMQGTAADII---------------------------- 844 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + T E I+Q VHDE+V Sbjct: 845 ------KKAMINIAHWIATETRGEIEMIMQ------------------------VHDELV 874 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + +C LM S + L AE + Sbjct: 875 FEVDSDKAEEMREKVCQLMADAVS--LDVELLAEAGIGDNW 913 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 773 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 95/708 (13%), Positives = 199/708 (28%), Gaps = 165/708 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + +D ET S + A + + + Sbjct: 351 VAVDTETTSLDEMR----------AELVGISLCVQAGTACYIPLGHRQGGGDLFGSSALT 400 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D+ ++ + N ++ + + + I T +++ Sbjct: 401 EGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKILAR---LGISVAPIDDTMLMSYAMH 457 Query: 105 ---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157 + L K + GK+ + + Y A+ ++ W+ Sbjct: 458 AGLNSHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDRVPIDQAVAYAAEDADITLRLWE 517 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 LF R T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 518 LFKPQLHRAHVTT--VYETL------ERPLVPVLAQMEMAGIQVDRDTLSRMSNAFAQKM 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQL 273 L+ +I + + L LF + + + T +L Sbjct: 570 AGLEAEIHDMAGEKF-NVGSPKQLGEILFDKMSLPGGEKGKTGAYATGADVLEDLATEHE 628 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L+ S + L + ++ GR+ + GA TGR + QN+P Sbjct: 629 LPGRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSLTGA-VTGRLASTDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G++LV D + IE R+LA + Sbjct: 687 -----------------------VRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHV 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A +AF G+DI+ T ++ FN P+D+++ + R K + Sbjct: 724 ADIPALKQAFREGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINF--------------G 769 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A ++ +A + + Sbjct: 770 VIYGISGF------------------------------GLARNLRIPRSAAQGFIDRYFE 799 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + G+ D + R++ Sbjct: 800 RFPGIKGYMDDTVAFAKANG--------------------------FVQTLFGRKIHTP- 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628 + + R +Q + D++ M ++L V Sbjct: 833 ---EINARGPGAGFAKRAAINAP------IQGTAADVIRRAMVRMPAAIAGIDAKMLLQV 883 Query: 629 HDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 HDE++ E + ++ + +M P+ + L E + Sbjct: 884 HDELLFEVAEDAVDTLIPIAREVMETACDPAVHLSVRLTVEAGHGANW 931 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 105/713 (14%), Positives = 193/713 (27%), Gaps = 174/713 (24%) Query: 1 MSKL------FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---- 50 M K+ +D ET S L A + + + + Sbjct: 361 MKKIEAAELTAVDTETTSLDALA----------AELVGISLSVKPGEACYIPVAHRNGEA 410 Query: 51 ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-- 104 + + +L + + V N ++ +F I + + T + + Sbjct: 411 QLSRELVLKRMKSWLESSSHLKVGQNLKYDIHIFANY-DIHLEGIAF-DTLLESYVLESH 468 Query: 105 LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 LP ++ + L + GK + Q+ Y Sbjct: 469 LPHNMDSLAERHLGLKTIRYEEVCGKGVHQIG---------------FDQVDLQIATNYA 513 Query: 164 KRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T L L P E L+ + G RID L+ K + Sbjct: 514 AEDADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQ 573 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHS 268 + + +L+ +I +L + + + LF + + + T + +L Sbjct: 574 VGKRLLELEGEIHRLAGQPF-NIQSPKQIAEILFGQLELPIVKKTPSGAPSTDEEVLQKL 632 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 IL+ + + + L GR+ A TGR + Sbjct: 633 AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRIHTNFSQATA-VTGRLASSDPNL 691 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R I ++G KL+ AD + IE R Sbjct: 692 QNIP------------------------VRTEEGRRIREAFIPADGCKLLSADYSQIELR 727 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 ++A IA ++ + AF G+D++ T A+ F P+D V+ EQ Sbjct: 728 IMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDDVNSEQ------------------- 768 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + L A + A + Sbjct: 769 -------------------------RRYAKVINFGLIYGMSAFGLAGNLGIERAAAQNYI 803 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + ++ GV Q + RR Sbjct: 804 AKYFDRYPGVAQYMERTRLEARENGYVETVF--------------------------GRR 837 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621 L ++KG R +Q + D++ M Sbjct: 838 LWLPEIKGSNGPRRQGA---ERAAINAP------MQGTAADLIKLAMIAVEDWLEKEQLK 888 Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V + P + L LM +PL + Sbjct: 889 TKMLLQVHDELVFDVPLDEIDLLQAKLPDLMCHVAQ--LKVPLVVSIGIGDNW 939 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 99/706 (14%), Positives = 204/706 (28%), Gaps = 171/706 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S + A + + A+D + Sbjct: 346 RFAIDTETTSLD-------YRVA---EMVGFSVAFDAKDAYYVPLAHDYAGAPEQLNREQ 395 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L ++ V + H+ ++ +F GI++ + T + + + Sbjct: 396 VLAQIKPILENDQVEKIGHHLKYDAHIFANH-GIELKGW-FFDTMLASYVLNSVATRHGM 453 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK ++ + ++ Y D Sbjct: 454 DDVARLYLSHLTTTFEQVAGKGAKQ---------------KSFNQIELEVASPYAAEDAH 498 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L E + + + + G R+D + +L A+ Sbjct: 499 VTYRLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTM 558 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 ++L++ +++ G + + LF GI + T +SIL Sbjct: 559 QELEQQAMEMA-GETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSESILEKIEHP-- 615 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + + L + + S R+ + + TGR S QN+P Sbjct: 616 IAAVILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQA-LTATGRLSSSDPNLQNIP- 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 G +R IA G+ L+ AD + IE R++A Sbjct: 674 -----------------------IRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHF 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + +D + AF +G+D++ T A+ ++ V+ +QR K + Sbjct: 711 SQDDALLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVN--------------FG 756 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + K + Sbjct: 757 LLYGMSEF------------------------------GLIRQLGFTRQESQDYIKQYFH 786 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ G+ + + + + RRL D Sbjct: 787 RYPGIYEYMQRTRQLALEQG--------------------------FVDTLFGRRLYTPD 820 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTV 628 + + R Q + DI+ M K + ++L V Sbjct: 821 IDARNMMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQARLLLQV 871 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E + + L +M +PL E + + Sbjct: 872 HDELVFEVDENIADELAPQLAEVMESVVE--ISVPLLVEVGKGCNW 915 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 113/723 (15%), Positives = 203/723 (28%), Gaps = 187/723 (25%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS----- 51 D ET S P+ A + + A D ++ Sbjct: 446 FDTETTSLDPMR----------ADLCGVSLAIADYSNDPMGGTIRAAYVPLIHKNGVGDL 495 Query: 52 -------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 S L L D +V+ VA N ++ ++ K+ I + + T + Sbjct: 496 LGGGLVENQVPMREALSRLKNLLEDPSVLKVAQNLKYDYLVMKRH---GIAMQSFDDTML 552 Query: 99 LARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 ++ + + L + K G + + Sbjct: 553 MSYVVDAGNGMHGMDSLSERWLGHTPIPYKDIAGTG---------------KASVSFDFV 597 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLD 204 Y D + T L+ L P ER L + + +RG +D Sbjct: 598 DIDKATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQ 657 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GT 260 ++ +L +AQ L+++I +L L LF G+ ++ T Sbjct: 658 ILSRLSGELAQGAAALEDEIYRLAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWST 716 Query: 261 LKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 S+L I++ + + L V + + T A+ TGR Sbjct: 717 SASVLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAATTTGR 776 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +R+ IA+ G KLV A Sbjct: 777 LSSSEPNLQNIP------------------------VRTAEGRRIRTAFIATPGHKLVSA 812 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 813 DYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINF-- 870 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ + + Sbjct: 871 ------------GIIYGISAFGLANQLSIE------------------------------ 888 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + K + + G+ ++ Sbjct: 889 RSEAGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIF--------------------- 927 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618 RR Y D++ + R +Q + DI+ M Sbjct: 928 -----GRRAHYPDIRSSNPSMRAF---NERASINAP------IQGSAADIIRRAMVKMEP 973 Query: 619 -----KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEA 670 K ++L VHDE++ E + ++ + S+M A +PLK + A Sbjct: 974 ALDEAKLAARMLLQVHDELIFEVEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAA 1033 Query: 671 KRY 673 + + Sbjct: 1034 QNW 1036 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 92/693 (13%), Positives = 194/693 (27%), Gaps = 144/693 (20%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + E + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E V+ V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + G+ + ++ Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGII--------------YGISVFGLAER-- 819 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + + + Sbjct: 820 ----------------------------MNVDRKEAKELIDGYFETYPQIKEYMDKSIDL 851 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 +I R+ D+ S + Sbjct: 852 AR--------------------------GQGYIETIFGRKRYLPDINSRNSVVRGYA--- 882 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641 R +Q + DI+ M + ++L VHDE+ Sbjct: 883 ERNAINAP------IQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEK 936 Query: 642 FSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL+A+ + Sbjct: 937 EKVQKIVIEEMENA--YRMQVPLRADCGCGSNW 967 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + QA + +++ + Sbjct: 334 FAFDTETTSLDYM----------QAQLVGMSFSVKAGEAAYLPVAHDYPDAPEQLSLEFV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D V N +++ + G ++ ++ T + + + Sbjct: 384 MQKLGPILADANKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMD 441 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + Y D + Sbjct: 442 SLALKYLGHKNISFEDIAGKGKKQL---------------TFNQIELDKAAPYAAEDADI 486 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I G ID ++ + + + Sbjct: 487 TLRLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAHSQRLGERLI 546 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+++ ++ + L++ LF + + + T + +L Sbjct: 547 ELEKEAFEIAGEPF-NLSSPKQLQVLLFEKLELPIIKKTPKGAPSTAEEVLQELAHDYPL 605 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ S + L V+ R+ + + TGR S QN+P Sbjct: 606 PKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 662 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA++G K+V AD + IE R++A ++ Sbjct: 663 ----------------------IRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLS 700 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFANG D++ T A+ F +D V+ + R K + Sbjct: 701 QDKGLLNAFANGLDVHSATAAEVFGVDLDDVTTDMRRKAKAVNF--------------GL 746 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 747 IYGMS------------------------------AFGLARQLDVPRHEAQHYIDKYFER 776 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 GVL+ + E A RRL ++ Sbjct: 777 FPGVLEYMETTREKAAENGYVETIF--------------------------GRRLHLPEI 810 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-------DIVL 626 R +Q + DI+ + M + + Y +++ Sbjct: 811 NARNGARR---KGAERAAINAP------MQGTAADIIKKAMLSVNQWVYEQAPNTVKLLM 861 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + +C LM++ S +PL E E + + Sbjct: 862 QVHDELVFEIKTDCAEAYTKQICELMSQAAS--LDVPLIVEADEGENW 907 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 407 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 456 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 513 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 514 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 558 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 618 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 619 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 677 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 678 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 737 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 738 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 773 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 774 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 825 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 826 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 849 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 850 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 883 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 884 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 934 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 935 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 991 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 IDIET S + A + + A+D + + Sbjct: 350 HFAIDIETTSLD-------YRIA---EMVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + T + + + Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDTMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L+ +L P + E + + + + G R+D + L A+ R Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTR 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ D + + LF GI + T +S+L Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKVLPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + + Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGLNW 919 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 201/706 (28%), Gaps = 169/706 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + +A + Sbjct: 351 FAFDTETDGLDTLT----------ANLIGLCFAVKPGEAAYLPVGHDYLDAPDQLDRATV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L + D T+ + N F+R + K+ I++ + T + + + Sbjct: 401 LAALKPVMEDPTIGKIGQNLKFDRGVLKRY-DIELAGIAF-DTMLESYVLDSVAGRHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + + GK + A + Y D + Sbjct: 459 SLAERFLQHTTVSFEEIAGKGRNQL---------------TFNQIAMEQAASYAAEDADV 503 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L ++L P + E L + I G ID ++ +A+ + Sbjct: 504 TLRLHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLIDESILAAHSVELAKRLE 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ + +L + + T L+ L+ + ++ + T + +L+ + Sbjct: 564 ELEGEAHQLAEEPF-NLSSTKQLQEILYDKQKLPVLKKTPGGAPSTNEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L + ++ + T + TGR S QN+P Sbjct: 623 PKLILEYRGLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 679 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A +A Sbjct: 680 ---------------------VRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLAR 718 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFA G+DI+ T A+ F ++KV+++QR K + Sbjct: 719 DPGLLNAFAAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINF--------------GLI 764 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + + ++ Sbjct: 765 YGMS------------------------------AFGLARQLSVPRSEAQKYMNLYFERY 794 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL+ + ++ RRL D+ Sbjct: 795 PGVLEYMERTRRQA--------------------------SDRGYVETLDGRRLYLLDIH 828 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628 + R +Q S DI+ M +++ V Sbjct: 829 SRN---GMRKKGVERAAINAP------MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQV 879 Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E S + +LM +PL+ + + + Sbjct: 880 HDELVFEVQRDAVESAKARIKALMEGCFK--LDVPLQVDVGVGENW 923 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 824 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 825 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 848 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 849 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 882 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 883 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 933 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 934 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 115/702 (16%), Positives = 195/702 (27%), Gaps = 152/702 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S D R+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F T + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + G + +A + + + R + L Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASLW--------- 876 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 D L +++ VHDE+ Sbjct: 877 -----------------------------------DCLK----------SKLIMQVHDEL 891 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E P+ V L +M K +PL AE + + Sbjct: 892 VLEVPEAELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 97/722 (13%), Positives = 193/722 (26%), Gaps = 185/722 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 D ET L A + + A Sbjct: 352 FSFDTETDGLDTLT----------ANLVGVSLAIKPGEAAYLPLGHITSRVYSSNIYSST 401 Query: 50 ------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 + + + L L D+ + + N F++ + + GID+ + T Sbjct: 402 VSPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIAF-DTM 459 Query: 98 VLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + + + + L + GK Sbjct: 460 LESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQL---------------TFDQ 504 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRID 202 Y D + T L + L + + L + I G ID Sbjct: 505 IPLAQASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLID 564 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSE 258 ++ + + Q +L+ +L G + L L+ + + Sbjct: 565 TTILAEHSRELTQRLAELEVQAHELA-GEAFNLSSPKQLGAILYEKLQLPVIKKTPKGAP 623 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T + +L+ + LIL + + L + ++ R T + TG Sbjct: 624 STNEEVLAELALDYPLPKLILEHRGLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVTATG 683 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R IA G +++ Sbjct: 684 RLSSSDPNLQNIP------------------------VRNEEGRRIRQAFIAPEGYRILA 719 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ + ++AF++G DI+ T A+ F P+D+V+ EQR K + Sbjct: 720 ADYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINF- 778 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 779 -------------GLIYGMS------------------------------AFGLSRQLAI 795 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + ++ GV + + + Sbjct: 796 PRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGY------------------------- 830 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ + R +Q + DI+ + M Sbjct: 831 -VSTLDGRRLYLPDIHSRNV---NSRKAAERAAINAP------MQGTAADIIKKAMIAID 880 Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAK 671 K +++ VHDE+V E + + +LM +PL+ + Sbjct: 881 AWLRQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIRNLMEGCMQ--LDVPLQVDIGTGS 938 Query: 672 RY 673 + Sbjct: 939 NW 940 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 113/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S L A + + A + Sbjct: 353 FAFDTETDSLDVL----------SANLVGISCADAPGQAYYIPLAHDYLDAPAQLDREWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V V N ++ + + GI + + T + + + Sbjct: 403 LARLQPLLEDEKVAKVGQNLKYDIGVMARH-GIILRGVAF-DTMLESYVLNSVAGRHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + + EY D + Sbjct: 461 SLAARHLDHKTITFEEVAGKGKGQL---------------TFNQIPLEQAAEYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +RL P+ + E L + + G ID ++ + + +A Sbjct: 506 TLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDSTILGQHSQELAVRLN 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSIL-SHSNITQL 273 L++ L D + T L+ LF + ++ + T + +L + Sbjct: 566 ALEQQAHTLADEPF-NLSSTKQLQSILFDKQQLPILKKTPGGAPSTNEEVLVELAEQGYE 624 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL+ + + L + VS GR+ + + TGR S QN+P Sbjct: 625 LPQVILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 682 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G K+V AD + IE R++A + Sbjct: 683 -----------------------VRSDEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHL 719 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ ++AFA G+DI+ T A+ F P++ V+ +QR K + Sbjct: 720 SGDRGLLEAFAAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINF--------------G 765 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 766 LIYGMS------------------------------AFGLARQLNIGRNEAQRYMDLYFE 795 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + + + + RRL Sbjct: 796 RYPGVLAYMERTRQQASEQGY--------------------------VETLDGRRLYLP- 828 Query: 573 VKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 + + N + R +Q + DI+ M ++ Sbjct: 829 ---EINARNAMRRKAAERAAINAP------MQGTAADIIKRAMIAVDAWLQQSQPQVRMI 879 Query: 626 LTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E P+ V + +LM S A +PLK + + + Sbjct: 880 MQVHDELVFEVPEALVDEVVSHVRTLMEG--SLALAVPLKVDIGCGENW 926 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 195/707 (27%), Gaps = 169/707 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S L A I +++ + A+ Sbjct: 353 VALDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 L +L D + + + ++R +F I + T + + + P +L + Sbjct: 403 LERLKPWLEDGSRAKLGQHVKYDRHVFANH-DIGVRGY-VHDTMLQSYVLEVHKPHNLAS 460 Query: 112 ACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + GK + Y D + T Sbjct: 461 LAERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVEQAAAYSCEDSDQT 505 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ + L PL + E + + I G ID + + + Q KL Sbjct: 506 LDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276 +++ + + L F G+ +V + T + +L Sbjct: 566 EQEAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPA 624 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL + S + LS+ GR+ A TGR S QN+P Sbjct: 625 KILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP---- 679 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G+ + AD + IE R++A ++G+ Sbjct: 680 --------------------IRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 D ++AF G D++ T A+ F +D+VS EQ Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQ--------------------------- 752 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + A + ++ Sbjct: 753 -----------------RRYAKVINFGLIYGMSSFGLARNLGIDNKAAAAYIDRYFQRYP 795 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q + RRL ++ Sbjct: 796 GVKQYMDETKASAKARGYVETVF--------------------------GRRLYLPEINS 829 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 A R +Q + D++ + M K +++ VH Sbjct: 830 PNGPRRGAA---ERAAINAP------MQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVH 880 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V E P+ + + LM +PL AE + K Sbjct: 881 DELVFELPEEEAGWLRTEIPRLMAGVAE--LKVPLLAEVGTGPNWEK 925 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 103/710 (14%), Positives = 200/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + T + Sbjct: 349 YVAVDTETTGLNEMI----------ADLVGISLCVVPGQACYVPLTHKTGNSDDLFGSDD 398 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L D+ ++ + N ++ +F + I T +L+ Sbjct: 399 LAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN---GIDVTPIDDTMLLSYA 455 Query: 103 NG---LPSSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L+ K G K+ I D+ PY A+ ++ Sbjct: 456 LHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDATPYAAEDADITLRL 515 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ F + T +++ L ER L + + G ++D D + ++ +Q Sbjct: 516 WQQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQHGIKVDRDTLSRMSNAFSQ 567 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I +L G + L LF + + T IL Sbjct: 568 KMAALEAEIHELA-GETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADILEDLATE 626 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L E + GR+ + GA+ TGR + QN+ Sbjct: 627 HTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A G L+ D + IE R+LA Sbjct: 686 P------------------------VRSEEGRRIREAFVADEGNVLLSLDYSQIELRILA 721 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +AG D +AFA+G DI+ T ++ F+ P+++++ + R K + Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAIN-------------- 767 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 768 FGVIYGISGF------------------------------GLARNLRIPRGEAQGFIDRY 797 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ Q D + R++ Sbjct: 798 FERFPGIRQYMDDTVNFAKEHGY--------------------------VQTLFGRKIHT 831 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + + S R +Q + D++ M ++L Sbjct: 832 P----EIAAKGPRASFAKRAAINAP------IQGTAADVIRRAMVRMPEAIAHLPARMLL 881 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E P+ + +M A + L + + + Sbjct: 882 QVHDELLFEVPEDHVEETISVAREIMEGAADPAVHMDVKLVVDAGRGQNW 931 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 111/703 (15%), Positives = 195/703 (27%), Gaps = 162/703 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMP 54 ID ET S P+ QA + + + + + Sbjct: 338 SIDTETTSLIPM----------QAQLVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVL 387 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + +L D + V N ++ +F G+++ T + + + + Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHIFANH-GVNLRGI-VHDTLLESYVFESHRSHDMDSL 445 Query: 113 C-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK I + EY D + Sbjct: 446 ALRHLNRKTITFQEVCGKGASQIGFEQVEIGRAT-----------------EYAAEDADI 488 Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L +R+ P E ++ Q I G ID DL+ K + + Sbjct: 489 TLQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRML 548 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +++++ +L + + + F + S T + +L Sbjct: 549 EIEQNAYELAEQPF-NLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKLAEDYPL 607 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L S + L + + GR+ A TGR + QN+P Sbjct: 608 PKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-- 664 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G +V AD + IE R++A I+ Sbjct: 665 ----------------------IRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHIS 702 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ ++AFA+GEDI+ T A+ F V EQR KV+ L Y Sbjct: 703 GDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMS-----AFGL 757 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L +++ + F + + + + + + G L Sbjct: 758 AGNLGIERSAAQSYIERYFHRFAGVKRYMDETRLEAKARGYVQTVFGRRLWL-------- 809 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G Sbjct: 810 -PEINSPNGPRRQGAERAAINAPMQGT--------------------------------- 835 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 KL VQ K +++ VHDE+V Sbjct: 836 -----------------AADLIKLAMIAVQG---------WLETEKLQSKMIMQVHDELV 869 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P+T V L LM +PL AE + K Sbjct: 870 LEVPETELPLVREKLPELMRHVAQ--LKVPLIAEVGVGNNWDK 910 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 108/728 (14%), Positives = 203/728 (27%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 +L L V + N ++ +F G+ Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSVEIEQRLSELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 E + L G L + + + +A + V Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDDN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] Length = 681 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 221/683 (32%), Positives = 337/683 (49%), Gaps = 49/683 (7%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLG---IDIPS 90 +A DD PV WD T + MP +L + + D N +F+R++ K +P Sbjct: 5 WAIDDGPVGTWDVTTGAPMPVELDEAI-DAADEYWWQNGGMFDRVVLKHAAPEIYARMPE 63 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDCTR 149 +W T V A +GLP L C N K +EG LI FCK +S TR Sbjct: 64 HKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRRATR 123 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRL----IPLSDGERDLWLLDQTINDRGYRIDLDL 205 H + W F Y D+ A R + K + P + E LW DQ IN RG ++D++L Sbjct: 124 ETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMDVEL 183 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 I + +K+L V+LTDG + + Q L +L +DL DM + TL+ + Sbjct: 184 AEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLERRI 243 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + ++ ++L+ RL ++ ++ K TL VS+DGRLRG +QF GA RTGR + +F Sbjct: 244 NDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAHRLF 303 Query: 326 QPQNLPRQERSEEILTQTIQALNRGET-------------------IADPLGLASDCVRS 366 QP N+PR + + + + G+ + +GL ++ VR Sbjct: 304 QPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANVVRG 363 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-----DIYVTTYAKAFNTPI 421 I+A +GK+L V+DL+ IE R AW+AGE WK++AF + + D+Y YA+AF + Sbjct: 364 TIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVAV 423 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS---TSTFEDWEQA 478 + V K R +GKVMELAL Y+GG F T +DL V + T E +A Sbjct: 424 EAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIVREA 483 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 W + + + AC+++K+ WR H W +L + + G Sbjct: 484 RGMWEWAVKKRRTLGLPQDVFI-ACDILKRLWRRAHPQTSSYWPELRDAAILAISSPGKT 542 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--NTATSQLMRERT 592 + R+++RR + + LPS R+L Y + G+ SY+ N T + R +T Sbjct: 543 -----VHARRVILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKWQRTKT 597 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMT 652 YGGK+ EN+ QA++RD+L GYDIVL++HDE+++E PD +S L SL+ Sbjct: 598 YGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADELSSLIA 657 Query: 653 KNPSWAKGLPLKAEGYEAKRYRK 675 P+WA+G+PL A G+ A RY+K Sbjct: 658 TAPAWAEGMPLAAAGFSAYRYKK 680 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 200/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAQDAYYVPLAHTYENAPQQLNREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + T + + + Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDTMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVATHYAAEDAH 502 Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L+ +L P + E + + + + G R+D + L A+ Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ D + + LF GI + T +S+L Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + ++M +PL E + + Sbjct: 877 DELVFEVDQNIADELSKQIANVMESVLE--ISVPLVVEVGQGLNW 919 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 197/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ Q + + A + Sbjct: 390 ILAFDTETTSLDPM----------QGELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 191/707 (27%), Gaps = 173/707 (24%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPS 55 ID ET S + A I +++ + T + + Sbjct: 365 IDTETTSLDEMV----------AQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLA 414 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC 113 L +L + + + ++R +F GI++ T + + + P L + Sbjct: 415 KLKPWLENPEKKKLGQHIKYDRHVFANH-GIEVEGYA-HDTMLQSYVLEVHKPHGLASLA 472 Query: 114 LA-LNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK I+ + EY D + T Sbjct: 473 ERHLGRSGISYEDLCGKGAHQISFSQVDIAKAA-----------------EYSCEDSDQT 515 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ + L P + E D + G ID + + L Sbjct: 516 LDVHRTLWPQLEANEKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMAL 575 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ ++ + + F G+ + T + +L Sbjct: 576 EQEAYEIAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPA 634 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL S + L + + GR+ A TGR S QN+P Sbjct: 635 KILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP---- 689 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G + AD + IE R++A I+G+ Sbjct: 690 --------------------IRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGD 729 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AF G D++ T A+ F + D+VS EQ Sbjct: 730 ESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQ--------------------------- 762 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + A + + A++ Sbjct: 763 -----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAASYIERYFARYP 805 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + RRL ++ Sbjct: 806 GVKAYMDETKALAKEQGYVETVF--------------------------GRRLYLPEINS 839 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 R +Q + D++ M K +++ VH Sbjct: 840 PNGPRRGGA---ERAAINAP------MQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVH 890 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V E P+ V + LM A +PL AE + K Sbjct: 891 DELVFEVPEAEVEWVRAEIPRLMAGVA--ALKVPLLAEIGIGPNWDK 935 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 391 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 440 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 497 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 498 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 542 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 602 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 603 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 661 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 662 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 721 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 722 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 757 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 758 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 809 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 810 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 833 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 834 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 867 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 868 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 918 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 919 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 975 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 101/724 (13%), Positives = 197/724 (27%), Gaps = 184/724 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + D ET S + A + + A Sbjct: 347 TVAFDTETTSLDCMR----------ADLVGVSLAVAPGKACYIPLRHVGRQAQGDLLGAG 396 Query: 50 -----QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 +P + L L + V+ +AHN+ ++ ++ + I T L Sbjct: 397 PAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCL 456 Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + L L + + GK Sbjct: 457 SYVLEGGLHGHGLDELATLHLGHTNIKFEEVCGKGKTQIG---------------FAEAP 501 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDL 205 Y D + T L L P ER L + + G ++D + Sbjct: 502 IDKACAYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTI 561 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261 + + A+ L+ +I + + L LF G+ + T Sbjct: 562 LRDMSADFAKRLVTLEGEIHEQAGEPF-NVGSPKQLGEILFDKMGLAGGKKGKTGAYGTG 620 Query: 262 KSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTG 318 +L A+ ++ R + + + L E ++ GR+ + GA TG Sbjct: 621 ADVLETLAAEGSDFARKVLDWRQIAKLKST-YTDALVETINAETGRVHTSYSMVGA-ATG 678 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R+ +A G L+ Sbjct: 679 RLSSNDPNLQNIP------------------------IRTEEGRKIRTAFVAEPGNVLLS 714 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R++A IAG + KAF +G DI+ T ++ F P+ +++ + R K + Sbjct: 715 VDYSQIELRLVADIAGIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINF- 773 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ ++ + ++ Sbjct: 774 -------------GIIYGISGFGLARQLSTSQA--------------------------- 793 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + A+ + G+ ++ Sbjct: 794 ---EAQAYINAYFERFPGIRDYMTEMKTFAREHG-------------------------- 824 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 + R++ ++ + R +Q + D++ M Sbjct: 825 FVETKFGRKVHIQAIRDKNPAMRNFG---ERAAINAP------IQGTAADVIKRAMVRLP 875 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT--KNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E P+ + L +M P +PL AE Sbjct: 876 VALDKAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGAAAPQLNLSVPLIAEAGW 935 Query: 670 AKRY 673 K + Sbjct: 936 GKSW 939 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 112/728 (15%), Positives = 210/728 (28%), Gaps = 185/728 (25%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM------ 53 M++L +D ET + A QA + ++ ++ + + Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKIAQPTQV 402 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + L L + + + N ++ +F + GI+ Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRKIGQNIKYDLTIFARY-GIE 461 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ N L + GK Sbjct: 462 LQGVAF-DTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEELAGKGKHQL---------- 510 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 EY D E T +L + L E L + Sbjct: 511 -----TFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSR 565 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ID +L I Q K+L+ + + G + + T L+ LF G+ + Sbjct: 566 VERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEA-GEVFNLASTKQLQEILFNKLGLPI 624 Query: 254 ----VDMSEGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L + L++ S + L + ++ GR+ Sbjct: 625 LKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHT 684 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 685 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEQGRRIRQA 719 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G ++ AD + IE R++A +A + IKAFA G+DI+ +T A+ F P++ V+ E Sbjct: 720 FIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSE 779 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + L +++ Sbjct: 780 QRRSAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIRE 834 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + E + L G L + + + + +A + V Sbjct: 835 KAAEKGYVETLFGRRLYL---------PEINSSNQMRRKAAERVAINAPMQGTAADIIKV 885 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + R+ Sbjct: 886 AMIGIDQAVRNCE----------------------------------------------- 898 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 DI M + VHDE+V E + + M K +PL A Sbjct: 899 -DI---AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIA 942 Query: 666 EGYEAKRY 673 E + Sbjct: 943 EVGVGSNW 950 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTDSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 LP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGRHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGISFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDIASQYAAEDADVTMKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + + L G L + + + +A + V Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 210/709 (29%), Gaps = 166/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET + + + + T + Sbjct: 352 VAVDTETTGFDEMV----------VDLVGISLCVEPGRACYIPLTHKSGSSDDLFGSDDL 401 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D +++ + N ++ +F + GID+ T +++ Sbjct: 402 ADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAP--IDDTMLMSYAM 458 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + LN + K + GK+ I D+ Y A+ ++ W Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF + T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 L+ +I +L G + L LF G++ + T IL Sbjct: 571 MAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDLATEH 629 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L+ S + L + ++ GR+ + GA+ TGR + QN+P Sbjct: 630 ALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNIP 688 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R + G L+ D + IE R+LA Sbjct: 689 ------------------------IRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAH 724 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +AG D +AFA G+DI+ T ++ FN P+++++ + R K + Sbjct: 725 VAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------------F 770 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 771 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 800 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + + H+ R++ Sbjct: 801 ERFPGIRRYMDETVAFAKEHG--------------------------HVQTLFGRKIHTP 834 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + S R +Q + D++ M ++L Sbjct: 835 ----EISAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLPARMLLQ 884 Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E P+ ++ T +M A + L + + + Sbjct: 885 VHDELLFEVPEAAVEDTIETASQVMETAADPAVHLDVKLVVDAGRGQNW 933 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLSELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + + L G L + + + +A + V Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 197/706 (27%), Gaps = 169/706 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPDQLDRATV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE ++ + N F++ + ++ ID+ + T + + + Sbjct: 403 LALLKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 461 SLAERYLKHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L L + I G ID ++ + + + Sbjct: 506 TLHLHQTLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ +L + T L+ L+ + + + T + +L+ + Sbjct: 566 ELEIQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L ++ + T + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSG 720 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ + AFANG DI+ T ++ F +DKV+ EQR K + Sbjct: 721 DEGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINF--------------GLI 766 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ + + + + + + ++ Sbjct: 767 YGMS------------------------------AFGLSRQLNIPRSESQKYMNLYFERY 796 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + + A + RRL D+ Sbjct: 797 PGVQDYMERTRQQAAEHGY--------------------------VSTLDGRRLYLPDIH 830 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTV 628 + A R +Q + DI+ + M +++ V Sbjct: 831 SRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKDAPKVKMIMQV 881 Query: 629 HDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E D+ + + LM +PL+ + + Sbjct: 882 HDELVFEIDDSIVEESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 190/702 (27%), Gaps = 160/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + A + ++ ++ + Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPTQLSREFV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L ++ V + +++ + I + + T + + + Sbjct: 403 LDALKPILESSNIIKVGQHIKYDKNVLANY-DITLNGIGF-DTMLESYVLNSTAQRHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 461 SLALAYLGHKTIHFEDIAGKGAKQL---------------TFNQIALEEAGPYAAEDADI 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + E L + + G ID + + + +A Sbjct: 506 TLRLHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLSQQSQDLAARIA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L++++ + + T L+ LF + + + T + +L + Sbjct: 566 ELEKEVHEEAGEPF-NLGSTKQLQHILFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 I+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQA-ITATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR + G K V AD + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA+G+DI+ T ++ F P+D+V+ EQR K + L Y Sbjct: 720 GDKGLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMS-----AFGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + ++ E + + G L Sbjct: 775 AKQLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G ++ V Sbjct: 827 -PDIKASNGARRKGAERAAINAPMQGTAADII---------------------KMAMIKV 864 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISR-DILCEGMKNATKNGYDIVLTVHDEI 632 S + D+ M E+ Sbjct: 865 DDWISKN-------------------------AADDVTM--MMQVHD-----------EL 886 Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E + S V T+ +LM + +PL E + + Sbjct: 887 VFEIKEDKVDSYVKTINTLMESAAT--LNVPLVVEAGVGENW 926 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 109/728 (14%), Positives = 206/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L+P D E L + Sbjct: 514 -----TFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 E + L G L + + + +A + V Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIDIDKA------------------IRGDDN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELIEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 115/695 (16%), Positives = 200/695 (28%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPREEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L V + ++ + GI++ T + + P + N Sbjct: 389 AKLKPWLESAQQKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRDVEAT 170 L + GK + + +L Y + E T Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIGFDEVALEKAAEYAAEDADITLRLHQTMYPQLAAEKT 506 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R D E + + + G ID + + + IA +L+ +L G Sbjct: 507 LENVYR-----DIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAYELAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L ++L S Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620 Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ S GR+ A TGR + QN+P Sbjct: 621 LKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA G KLV AD + IE R++A I+G++ ++AF+ G Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQG 715 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F+ +VS +QR + KV+ G+ + N Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLASN 761 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + A +L + A++ GV + + Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 792 LSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M K G +++ VHDE++ E PD Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDE 876 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM A +PL AE + Sbjct: 877 ELPEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 109/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P D E L + Sbjct: 514 -----TFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 E + L G L + + + +A + V Sbjct: 838 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 111/716 (15%), Positives = 197/716 (27%), Gaps = 180/716 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51 D ET S + QA I ++A Sbjct: 353 FSFDTETTSLDYM----------QARIVGLSFAVQSNVGSDEQPIIEAAYLPLAHDYIDA 402 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 L L E V N ++R + GI++ ++ T + + Sbjct: 403 PKQLDLTTTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIELKGIKF-DTMLESYVLD 460 Query: 105 LP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + GK + + Sbjct: 461 STGRHDMDTLALKYLGHQCISFEEIAGKGKKQL---------------PFNQISIIEAAP 505 Query: 162 YCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L +L + E L + I G ID DL+ K Sbjct: 506 YAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERGGVEIDSDLLTKQS 565 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILS 266 I + +L+ + + L+ L+ + + T + +L Sbjct: 566 AEIGKRLLELEALAYEEAGKPF-NLSSPKQLQTILYDELELPVLKKTPKGAPSTAEEVLQ 624 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVF 325 +T LI+ S + L + V+ GRL + Q + TGR S Sbjct: 625 ELALTYPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLHTSYQQAV-TVTGRLSSTDP 683 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R IA G K+V AD + IE Sbjct: 684 NLQNIP------------------------IRSAEGRRIRQAFIAQPGYKIVAADYSQIE 719 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R++A ++ + + AF+ G+DI+ T ++ F+ P+D+V+ EQR K + Sbjct: 720 LRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINF-------- 771 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + +L Sbjct: 772 ------GLIYGMS------------------------------AFGLAKQLNIGRHEAQL 795 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + ++ GVL +D + Sbjct: 796 YMDKYFNRYPGVLIYMEDTRSLANEKAYVETIL--------------------------G 829 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--- 622 RRL ++K L R +Q + DI+ + M + Sbjct: 830 RRLQLPNIKSRNGMLK---KAAERAAINAP------MQGTAADIIKKAMIDMADWIAQKS 880 Query: 623 ----DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ VHDE+V + S + ++M K +PL A+ + Sbjct: 881 PGSVQMLMQVHDELVFSIKEELVESYTKEIQAIMAKAAD--LDVPLIADAGVGDNW 934 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 196/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 D+ET S + A I ++A + + Sbjct: 322 FAFDLETTSLNYM----------DAEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D + N ++ + I + R+ T + + + Sbjct: 372 LEQLRPLLEDPRRAKLGQNLKYDMSVLA-HYDIALRGVRF-DTMLESYILDSTATRHDMD 429 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK A + EY D + Sbjct: 430 SLALKYLGHRTIKFEDVAGKGAKQL---------------TFDQVAIERATEYAAEDADI 474 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 L + L P E L + + G + +L+ +AQ Sbjct: 475 ALRLHRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLA 534 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +++ + + + ++ L+ G+ + T +S+L T Sbjct: 535 EIEASVYRAAGCEF-NLGSPKQIQAVLYDRQGLPVLAKTPKGAPSTAESVLQELAATYPL 593 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL A + + L + GR+ + + A TGR S QN+P Sbjct: 594 PRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVA-ATGRLSSSDPNLQNIP-- 650 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +L+ D + +E R++A + Sbjct: 651 ----------------------VRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFS 688 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ +AFA GEDI+ T A+ F T +++V+ EQR K + Sbjct: 689 GDERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAINF--------------GL 734 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + A + + + + Sbjct: 735 IYGMS------------------------------AYGLARQLGIERDAAQHYVERYFER 764 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + R + ++ RRL ++ Sbjct: 765 YPGVKAFM--------------------------ERIRREARERQYVETVFGRRLYLPEI 798 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLT 627 + A R +Q + DI+ M + +VL Sbjct: 799 NASNAQRRQAA---ERTAINAP------MQGSAADIIKRAMVRVDQWLQSEREDVFMVLQ 849 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P +V + + M +PL E + Sbjct: 850 VHDELVFEVPTPDVQAVAERIRAFMVGAAE--LSVPLTVEAGWGDNW 894 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 95/702 (13%), Positives = 196/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLL 58 L +D ET P+ A + +++ + + + ++ Sbjct: 352 FLSLDTETTGTDPI----------SAKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFK 401 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 DE ++ + N ++ ++ + GI + + T + L + Sbjct: 402 SVYEDERILKIGQNIKYDLMVLQNY-GITLKGE-IFDTMIAHYLLQPELRHGMDYLAEVY 459 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ + G K + EY D + T +L Sbjct: 460 LNYQTIHIEELIGPKGKNQ---------------KNMADLPPSQVYEYACEDADITLKLK 504 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P + E L + + G ID + + + L +E L+E+I Sbjct: 505 NVFEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEI 564 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 L + + LF I + ++ T + +L + IL Sbjct: 565 HALAGEPF-NIASPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKIL 623 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L + ++ G + + + TGR S QN+P Sbjct: 624 EHRGLKKLLGTYIDALPKLINPETGHIHTSFNQT-ITTTGRLSSSNPNLQNIP------- 675 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I G + AD + IE R++A ++G+ Sbjct: 676 -----------------VRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHM 718 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF G DI+ T AK + P+++V++E+R+ K G+ Sbjct: 719 IEAFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANF--------------GIIYGIT 764 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ + + + + + V Sbjct: 765 VFGLAER------------------------------MNVSRAEAKELIDGYFTTYPKVK 794 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + E R+ D+ + Sbjct: 795 EYMQKSIETAREKGYTETIYH--------------------------RKCYLRDINSHNA 828 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + R +Q + DI+ M + ++L VHDE+ Sbjct: 829 VVRGYA---ERNAINAP------IQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDEL 879 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + + +PL+A+ K + Sbjct: 880 NFSVYPEEKERVQQIVIEEMERA--YTMQVPLEADYGWGKNW 919 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 112/703 (15%), Positives = 202/703 (28%), Gaps = 151/703 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L +D ET + A +A + + A + + Sbjct: 438 LAVDTETNALD----------AHRADLVGVSLATAPGRAAYIPLSHRGSEDLFGEGLLPN 487 Query: 51 ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL- 105 A+ + L L D V+ V N ++ ++ + GI++ + T +++ Sbjct: 488 QLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH-GIEVRP--YDDTMLISYVLDAG 544 Query: 106 --PSSLKNACLA-LNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRAN-HVQAWQLF 159 + L G + + Y A+ ++ W+L Sbjct: 545 KGSHGMDELARRHLGHQPITFADVTGTGRTKVTFDRVPLDKATAYAAEDADVTLRLWRLM 604 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + AT +++ L ER L + + G R+D ++ +L +Q + Sbjct: 605 KPRLAAERRAT--VYETL------ERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLAR 656 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLA 274 L+ +I ++ G S + LF G+ + T ++L Sbjct: 657 LEAEIQEMA-GESFSVSSPKQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHAL 715 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL S +TL E + T A+ TGR S QN+P Sbjct: 716 PKKILEWRQLSKLKSTYTDTLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQNIP--- 772 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G KL+ AD + IE R+LA IA Sbjct: 773 ---------------------IRTEEGRRIRQAFVADEGHKLISADYSQIELRLLAHIAD 811 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 +AFA G DI+ T + F P+D+++ + R K + + Y Sbjct: 812 IPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINFGIIYG-----ISAFGLA 866 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + Q FE + ++ ++ + L G C + Sbjct: 867 DRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRVCH---------Y 917 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + R ++ Sbjct: 918 PQIRSNNPQERASVERQAINAPIQGSAADII---------------------RRAMVRME 956 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 G + T M L VHDE+V Sbjct: 957 GALAAAGLTTR----------------------------ML----------LQVHDELVF 978 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRYR 674 E PD ++ + +M + P A +PL E A ++ Sbjct: 979 EAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQ 1021 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 197/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 + Q +++I L L LF G+ ++ T +L Sbjct: 602 GDLVQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 808 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 809 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 832 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 833 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 866 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 867 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 917 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 918 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 108/709 (15%), Positives = 211/709 (29%), Gaps = 166/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + + + + T Sbjct: 352 VAVDTETTGFDEMV----------VDLVGISLCVEPGSACYIPLTHKSGSSDDLFGSDDL 401 Query: 50 -QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 MP L L D +++ + N ++ +F + GID+ T +++ Sbjct: 402 ADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAP--IDDTMLMSYAM 458 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + LN + K + GK+ I D+ Y A+ ++ W Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF + T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 L+ +I +L G + L LF G++ + T IL Sbjct: 571 MAGLEAEIHELA-GQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGADILEDLATEH 629 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L+ S + L + ++ GR+ + GA+ TGR + QN+P Sbjct: 630 ALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNIP 688 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R + G L+ D + IE R+LA Sbjct: 689 ------------------------IRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAH 724 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +AG D +AFA G+DI+ T ++ FN P+++++ + R K + Sbjct: 725 VAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAIN--------------F 770 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 771 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 800 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + + H+ R++ Sbjct: 801 ERFPGIRRYMDETVAFAKEHG--------------------------HVQTLFGRKIHTP 834 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + S R +Q + D++ M ++L Sbjct: 835 ----EISAKGPRAGFAKRAAINAP------IQGTAADVIRRAMIRMPAAIAHLPARMLLQ 884 Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E P+ ++ T +M A + L + + + Sbjct: 885 VHDELLFEVPEAAVEDTIETARQVMETAADPAVHLDVKLVVDAGRGQNW 933 >gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 111/690 (16%), Positives = 205/690 (29%), Gaps = 143/690 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + D ET PL A + A++W+ E A+ +L Sbjct: 379 VCFDTETTGLDPLV----------AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRP 428 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + + + + N ++ + K + + K T + ++ L Sbjct: 429 FFENTAIEKIGQNLKYDIKVLAKY-NVKVKGK-LFDTMLAHYLINPDMRHNMDVLAETYL 486 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ GK + K D D T A + E ++ Sbjct: 487 NYTPVSITELIGKK--GKNQKSMRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRK 544 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L D E L + + G +D+ + L + + ++L +I + Sbjct: 545 LFD--DIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEAGEEF-NIG 601 Query: 237 QTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + D ++ T + +LS+ +L+ S Sbjct: 602 SPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSKLKSTY 661 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L E V+ DGR+ A TGR S QN+P Sbjct: 662 VDALPEQVAQDGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------------- 700 Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR + L+ AD + IE R++A ++ E+ I+AF +GEDI+ Sbjct: 701 ----IRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDGEDIHA 756 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 +T AK FN P+++V++EQR+ K + + Y D Sbjct: 757 STAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD------------ 799 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 L + + + + + +L E Sbjct: 800 ---------------------------LSRGEAKELIDNYYKSYPKLRNYMSELVEFARE 832 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + RR + + + A + Sbjct: 833 NGYVKTVLD--------------------------RRRYLNGINSSNGVVRGAAERN--- 863 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M N + ++L VHDE+V + P+ ++ Sbjct: 864 ------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAI 917 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 L M A +PL E + + Sbjct: 918 KELIKTEMESAFKMA--VPLDVEVGLGQNW 945 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 101/702 (14%), Positives = 182/702 (25%), Gaps = 161/702 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S L A I +++ + + Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L +L D + + ++R +F GI + T + + + P L + Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLASL 456 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + GK Y D + T Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVDKAAAYSCEDSDQTL 501 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ + L P + E I G ID + + Q +L+ Sbjct: 502 DVHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLE 561 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 ++ + + L F G+ +V + T + +L Sbjct: 562 QEAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 620 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + + LS GR+ A TGR S QN+P Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP----- 674 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + AD + IE R++A I+G++ Sbjct: 675 -------------------IRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF G D++ T A+ F +D+VS EQR KV+ L Y + Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKN 770 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L ++ + F+ + + + + + + + G L Sbjct: 771 LGIETKAAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYL---------PE 821 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + Sbjct: 822 INSPNGPRRGAAERAAINAPMQGT------------------------------------ 845 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 K VQ +++ + VHDE+V Sbjct: 846 --------------AADLIKKAMVAVQG-----------ELDARKPEVLMIMQVHDELVF 880 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P+ + + LM A +PL AE + K Sbjct: 881 ELPEGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 108 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 157 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 158 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 214 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 215 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 259 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 260 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 319 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 320 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 378 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 379 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 438 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 439 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 474 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 475 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 526 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 527 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 550 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 551 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 584 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 585 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 635 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 636 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 692 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 209/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 378 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA + Sbjct: 482 TLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLE 541 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 542 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSVEIEQRLSELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMELYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + + L G L + + + +A + V Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 182/705 (25%), Gaps = 169/705 (23%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPS 55 ID ET S + A I +++ + + + Sbjct: 368 IDTETTSLDEMV----------ARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLPFDEVLA 417 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC 113 L +L + + + ++R +F GI++ T + + P L + Sbjct: 418 RLKPWLENPAKKKLGQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEAHRPHGLASLA 475 Query: 114 LA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L S + GK EY D + T + Sbjct: 476 ERHLGRSGISYEDLCGKGAHQ---------------IPFSQVDIAKAAEYSCEDSDQTLD 520 Query: 173 LFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + L P + E D + G ID + + L++ Sbjct: 521 VHLALWPQIERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQ 580 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLI 278 + ++ + + F G+ + T + +L I Sbjct: 581 EAYEIAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKI 639 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L S + L + + GR+ A TGR S QN+P Sbjct: 640 LEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP------ 692 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 VR IA G + AD + IE R++A I+G++ Sbjct: 693 ------------------IRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDES 734 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF G D++ T A+ F D+VS EQ Sbjct: 735 LLRAFREGIDVHRATAAEVFGATPDQVSSEQ----------------------------- 765 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + L A + A + A++ GV Sbjct: 766 ---------------RRYAKVINFGLIYGMSSFGLARNLGIETKAAASYIDRYFARYPGV 810 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + RRL ++ Sbjct: 811 KAYMDETKALAKEKGYVETVF--------------------------GRRLYLPEINSPN 844 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 R +Q + D++ M K +++ VHDE Sbjct: 845 GPRRGGA---ERAAINAP------MQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDE 895 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V E P+ V + LM +PL AE + K Sbjct: 896 LVFEVPEAEIEWVRTEIPRLMAGVAE--LKVPLLAEIGIGPNWDK 938 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 182/702 (25%), Gaps = 161/702 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S L A I +++ + + Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L +L D + + ++R +F GI + T + + + P L + Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLTSL 456 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + GK Y D + T Sbjct: 457 AERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVDKAAAYSCEDSDQTL 501 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ + L P + E I G ID + + Q +L+ Sbjct: 502 DVHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLE 561 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 ++ + + L F G+ +V + T + +L Sbjct: 562 QEAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 620 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + + LS GR+ A TGR S QN+P Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP----- 674 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + AD + IE R++A I+G++ Sbjct: 675 -------------------IRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF G D++ T A+ F +D+VS EQR KV+ L Y + Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMS-----SFGLAKN 770 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L ++ + F+ + + + + Q + + G L Sbjct: 771 LGIETKAAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYL---------PE 821 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + Sbjct: 822 INSPNGPRRGAAERAAINAPMQGT------------------------------------ 845 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 K VQ +++ + VHDE+V Sbjct: 846 --------------AADLIKKAMVAVQG-----------ELDARKPEVLMIMQVHDELVF 880 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P+ + + LM A +PL AE + K Sbjct: 881 ELPEGEVDWLRREIPRLMAGVA--ALQVPLLAEVGVGPDWDK 920 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 197/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + A + ++A ++ + Sbjct: 355 IAFDTETDSLDYMV----------ANLVGLSFAIEEGVAAYVPVAHDYIGAPEQLDRQWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ + V N ++ + + I++ ++ T + + + Sbjct: 405 LEQLKPLLEDDAIAKVGQNLKYDASVLARY-DIELKGIKF-DTMLASYVYNSVGGKHDMD 462 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 463 SLALRFLQHSCISFEQIAGKGKAQL---------------TFNQIDLEQASPYAAEDADV 507 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +RL + E L + I G ID L+ + IA Sbjct: 508 TFRLHQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + L+ F G+ + T + +L + Sbjct: 568 ELEQKAFEIAGQEF-NLSSPKQLQTIFFEKMGLPVIKKTPSGAPSTNEEVLQELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 627 PKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K++ D + IE R++A ++ Sbjct: 684 ----------------------IRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF NG+DI+ T A+ ID+V+ EQR K + Sbjct: 722 GDKALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINF--------------GL 767 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + Sbjct: 768 IYGMS------------------------------AFGLSKQLGIPRGEAQQYMDTYFER 797 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 798 YPGVMQYMEDTRSLAAEKGYVETIF--------------------------GRRLHLPEI 831 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M + +++ Sbjct: 832 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDEWVQAEGEGKVKLLM 882 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 883 QVHDELVFEVESSSLSEIESKIQKLMESAAE--LDVPLVAEAGHGDNW 928 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 196/716 (27%), Gaps = 178/716 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 A + L L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + Sbjct: 514 GTGSHGMNPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 558 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 +AQ +++I L L LF G+ ++ T +L Sbjct: 619 DLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 677 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 I++ + + L ++ + T ++ TGR S Sbjct: 678 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 737 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G KL+ AD + IE Sbjct: 738 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 773 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 774 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 824 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 825 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 849 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + G+ + R Sbjct: 850 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 883 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R Y D++ + R +Q + DI+ M Sbjct: 884 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 934 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + +M P+ + +PL+ + A + Sbjct: 935 AARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 274 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 323 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 324 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 381 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 382 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 426 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 427 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 486 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 487 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 545 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 546 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 602 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 603 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 640 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 641 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 686 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 687 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 716 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 717 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 748 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 749 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 800 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 801 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 847 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 108/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + + ++ + GI + T + + + + Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLDKASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA +L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVEL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYVLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ + GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q VHDE+V E Sbjct: 854 ---SMIAVDDWLER----GGFAARMIMQ------------------------VHDELVLE 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 112/692 (16%), Positives = 201/692 (29%), Gaps = 132/692 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQS-------AMPSDL 57 D ET +P A + W E + L Sbjct: 398 DTETSDLKP----------RNAELVGIGCCWGLEATDTAYIPIAHNQGQNLDQQTVLEAL 447 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L + V N F+R++ +T GI + + T + + +L + Sbjct: 448 RPILERDRYPKVLQNVKFDRLVL-RTQGIKLAGV-VMDTMLASYVLNPDNSHNLNSLTER 505 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--EL 173 F + K K L K + +Q + F K + + Sbjct: 506 Y-FPQIQLKSY--KDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREKLEAIPAI 562 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 K L + E+ L + + +G RID + +L E + ++ ++++ K Sbjct: 563 EKLL---LEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYKQAGEEF- 618 Query: 234 SSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF +D T + L D IL S Sbjct: 619 NLGSPKQLSELLFEKLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEHRTLSKLK 678 Query: 289 ILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L + V D R+ + TGR S QN+P Sbjct: 679 STYVDALPKLVHKDTQRIHTDFNQT-ITSTGRLSSSNPNLQNIP---------------- 721 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R + +G LV AD + IE R+LA ++ E ++ + N +D Sbjct: 722 --------IRTAFSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLVETYRNNQD 773 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T F + V+ E+R +GK + + Y G + F A + Sbjct: 774 IHAVTAKLLF--EKETVTPEERRLGKTINFGVIYGMGPQRFAREA-----GVSAAEGKEF 826 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + M+ + ++G + R Sbjct: 827 IDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGRRRYFEFNSNR---------------- 870 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 L + K I L + + S L Sbjct: 871 ---------------------LRDAKGKNPQEIDL------------DEFKGIGQYDSGL 897 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643 +R +Q S DI+ M + ++L VHDE+V E P + Sbjct: 898 LRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQVHDELVFEVPPDEWEE 951 Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M +PL + E + + Sbjct: 952 LQPKIRETMESAVE--LTVPLVVDVSEGENWM 981 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 108/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + + ++ + GI + T + + + + Sbjct: 399 AKLKPWLEDASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLDKASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA +L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVEL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYVLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ + GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q VHDE+V E Sbjct: 854 ---SMIAVDDWLER----GGFAARMIMQ------------------------VHDELVLE 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPENELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 107/728 (14%), Positives = 203/728 (27%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 +L L V + N ++ +F G+ Sbjct: 406 LFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDIASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + + L G L + + + +A + V Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 107/710 (15%), Positives = 199/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + D ET S + QA + + A + Sbjct: 21 YVAFDTETTSLDEM----------QAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNR 70 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + + L L D V+ + N ++ + + + T +L+ Sbjct: 71 LTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARY---GVHLAPVDDTMLLSYA 127 Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155 + LN K G K+ + + Y A+ ++ Sbjct: 128 LHAGLHNHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAYAAEDADITLRL 187 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ F + T +++ L ER L + + G ++D D + ++ AQ Sbjct: 188 WQHFKPQLPQSRVTT--VYETL------ERPLIPVLTRMEMAGVQVDRDTLSRMSNAFAQ 239 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNIT 271 + +L+E+I G + L LF G + + + GT +L Sbjct: 240 KMVQLEEEIHAAA-GRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDLATE 298 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 LIL+ + + L + ++ D GR+ + GA+ TGR + QN+ Sbjct: 299 HALPGLILDWRQVAKLKSTYTDALQDHINPDSGRVHTSYSIAGAN-TGRLASTDPNLQNI 357 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 358 P------------------------VRTEEGRRIRGAFVAPAGKVLVSLDYSQIELRILA 393 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA D +AF G DI+ T ++ FN P+D+++ E R K + Sbjct: 394 QIAQIDALKEAFQQGLDIHAATASEMFNVPLDQMTPEIRRQAKAIN-------------- 439 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 440 FGVIYGIS------------------------------AFGLARNLRIPRDRAQGFIDRY 469 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ RR+ Sbjct: 470 FERFPGIRAYMDQTIAFAKENGHVRTLF--------------------------GRRINT 503 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 + + R +Q + DI+ M ++L Sbjct: 504 P----EINAKGPHAGFARRAAINAP------IQGTAADIIRRAMIQMDPAIAHLPARMLL 553 Query: 627 TVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E + + + +M A + L + + + Sbjct: 554 QVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIKLVVDAGRGQNW 603 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 207/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 378 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 482 TLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 542 QLEQKAYELAGKPF-NVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 353 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 403 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 461 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 506 TLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 566 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 625 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 682 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 796 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 827 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 828 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 879 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 880 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 926 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAQDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L+ +L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ D + + LF GI + T +S+L Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKIAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEADQNIAEELSKQIAKVMESVVE--ISVPLVVEVGQGKNW 919 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 191/706 (27%), Gaps = 169/706 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 ID ET S L A I +++ + + Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L D + + ++R +F GI++ T + + + P L + Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + GK Y D + T Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ---------------IPFSQVPVDKAAAYSCEDSDQTL 500 Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ + L P + E I G ID D + + Q +L+ Sbjct: 501 DVHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLE 560 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 ++ + + L F G+ +V + T + +L Sbjct: 561 QEAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 619 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + S + L++ GR+ A TGR S QN+P Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 673 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + D + IE R++A I+G++ Sbjct: 674 -------------------IRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF G D++ T A+ F + +V+ EQ Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQ---------------------------- 746 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + L A + TA + + ++ G Sbjct: 747 ----------------RRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQRYPG 790 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V Q +D RRL ++ Sbjct: 791 VWQYMQDTKAQAKARGYVETVF--------------------------GRRLYLPEINSP 824 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 +A R +Q + D++ + M +++ VHD Sbjct: 825 NGPRRSAA---ERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHD 875 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V E P+ + + +M +PL AE + K Sbjct: 876 ELVFELPEGDVDWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 102/707 (14%), Positives = 191/707 (27%), Gaps = 169/707 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S + A I +++ + Sbjct: 383 VALDTETTSLDEMR----------AQIVGISFSVTPGEAAYIPLAHAYPDAPAQLPLADV 432 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L+D + + + ++R +F GI++ T + + + P L + Sbjct: 433 LAKLKPWLQDASHKKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLAS 490 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK +Y D + T Sbjct: 491 LAERHLGRSGISFEDLCGKGANQ---------------ICFDQVDIAQAAQYSCEDSDMT 535 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ + L PL + E I G ID + + Q +L Sbjct: 536 LDVHRALWPLLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQL 595 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276 +++ +L + + F G+ +V + T +L Sbjct: 596 EKEAHELAGQPF-NLSSPKQIAEIFFTKLGLPVVKKTPTGSPSTDDEVLQKLAEDYPLPA 654 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL + + L++ GR+ A TGR S QN+P Sbjct: 655 KILEHRGLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA-VTGRLSSLEPNLQNIP---- 709 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G + AD + IE R++A I+G+ Sbjct: 710 --------------------VRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGD 749 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF +G D++ T ++ F +V+ EQ Sbjct: 750 AALLLAFHDGIDVHRATASEIFGVDRAQVTSEQ--------------------------- 782 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + TA + + + ++ Sbjct: 783 -----------------RRYAKVINFGLIYGMSAYGLAKALSIDNTAAKNYIERYFDRYP 825 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + RRL ++ Sbjct: 826 GVKNYMEHTRALAKRQGYVETVF--------------------------GRRLYLPEINS 859 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 + R +Q + D++ M K +++ VH Sbjct: 860 PNGPRRSGA---ERAAINAP------MQGTAADLIKLSMVKVQQVIDEEKRATKMIMQVH 910 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V E P++ V + LM +PL AE + K Sbjct: 911 DELVFEVPESEIDWVRHEVPRLMAGVAH--LKVPLLAEVGVGANWDK 955 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 104/718 (14%), Positives = 198/718 (27%), Gaps = 184/718 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET + + + + + Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCTEPGEACYIPLAHRADSDGGLFGDGDL 399 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 A L L D VM + N ++ +F + + T +++ Sbjct: 400 AEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY---GVRIAPIDDTMLMSYAM 456 Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + L+ + K G K + D+ Sbjct: 457 NAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQVPIEDAV-------------- 502 Query: 158 LFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVL 207 +Y D + T L+ L P ER L + + G ++D D + Sbjct: 503 ---KYAAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVDRDTLS 559 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263 ++ +Q+ L+ +I +L G + L LF G++ + T Sbjct: 560 RMSNAFSQKMAALEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGAD 618 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSG 322 +L +L+ S + L E ++ D GR+ + GA+ TGR S Sbjct: 619 VLEDLATEHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGAN-TGRLSS 677 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R +A GK +V D + Sbjct: 678 TDPNLQNIP------------------------VRSEEGRRIREAFVAPEGKTIVALDYS 713 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A D +AF +G+DI+ T ++ FN P+D+++ E R K + Sbjct: 714 QIELRILAHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINF----- 768 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ A ++ + Sbjct: 769 ---------GVIYGISGF------------------------------GLARNLRIPRSE 789 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + G+ D + Sbjct: 790 AQGFIDRYFERFPGIRTYMDDTVAFAKE--------------------------HKRVET 823 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----AT 618 R + + + R +Q + DI+ M Sbjct: 824 LFGRVIHTP----EIAAKGPRAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAIE 873 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E ++ ++M P +PL + + K + Sbjct: 874 KLPATMLLQVHDELIFEVEQGAEEALISAARTVMEGAAEPVVKLDVPLVVDAGQGKSW 931 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 104/722 (14%), Positives = 203/722 (28%), Gaps = 182/722 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET + P+ A + ++A + + Sbjct: 356 IAVDTETDALDPMR----------ANLVGISFALTNSEACYIPLAHKQAVKEMTQTDLFT 405 Query: 51 ------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + L L + ++ V N ++ +F I + Sbjct: 406 ESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHH-IQLNGVC 464 Query: 93 WICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + T + + ++ L + GK Sbjct: 465 F-DTMLQSYVLDSTGRHNMGALSERYLGHQVIEFESIAGKGKKQ---------------V 508 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRG 198 A EY D + T +L + L D E L + + G Sbjct: 509 TFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSKMERNG 568 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----V 254 ID +LK E IA+ L++ + + + T L+ LF + + Sbjct: 569 VLIDSQALLKQSEKIARRLTALEQQVYQEAGAEF-NLASTKQLQEILFTKLALPIIAKTP 627 Query: 255 DMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 + T + +L + L++ + + L V+ GR+ + Sbjct: 628 KGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSYHQA 687 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P C+R IA Sbjct: 688 V-TATGRLSSSDPNLQNIP------------------------IKNEEGHCIRQAFIARK 722 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G K++ AD + IE R++A ++ ++ I AF G+DI+ +T A+ F P+++V+ EQR Sbjct: 723 GYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSA 782 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + L Y + L + + + F+ + ++ + ++++ E Sbjct: 783 KAINFGLIYGMS-----SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQ 837 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + L G L + +G V Sbjct: 838 GYVETLFGRRLYL---------PEINSSNAIRRKGAERVAINAPMQGTAADII------- 881 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 +L + + N +Q Sbjct: 882 --------------KLAMIAIHNEIKK--------------------NDIQ--------- 898 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAK 671 +++ VHDE+V E + + SLM +PL + Sbjct: 899 -----------MIMQVHDELVFEVKENKVDEYSALIKSLMENAAH--LSVPLIVDIGVGD 945 Query: 672 RY 673 + Sbjct: 946 NW 947 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 96/725 (13%), Positives = 185/725 (25%), Gaps = 184/725 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET S + A + ++ ++ Sbjct: 357 IAVDTETDSLDAMT----------AELVGISFGLENGEACYIPLAHVHEVAEAEEQAQAD 406 Query: 50 ---------------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + + L L + + + N ++ +F GI + Sbjct: 407 LFAEPKATGKTSWHRLPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQV 465 Query: 89 PSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + T + + ++ + L + GK Sbjct: 466 QGVAF-DTMLESYVLNSTGRHNMDDLAERYLGHQTISFETLAGKGKNQL----------- 513 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTI 194 EY D + T +L + L + E L + I Sbjct: 514 ----TFDKIPLAQAAEYAAEDADVTMKLHQTLWAELEKTPTLTTLFKDIELPLVSVLSRI 569 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G ID + K + + L+ ++ G + L+ LF + Sbjct: 570 ERNGVLIDAQALRKQSQEFGERLTALEAKAHEIA-GEAFNLASPKQLQEILFNKLHLPVL 628 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 T + +L L++ + + L + ++ GR+ + Sbjct: 629 QKTPKGDPSTKEEVLEELAFDHELPKLLVEHRGLAKLKSTYTDKLPQMINPHTGRVHTSY 688 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 689 HQAV-TATGRLSSTDPNLQNIP------------------------IRNEEGRRIRQAFV 723 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A +G +++ AD + IE R++A ++G+ AF G DI+ +T ++ F P++ VS EQR Sbjct: 724 ARDGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQR 783 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + L Y L + + F+ + ++ +Q++ Sbjct: 784 RSAKAINFGLIYGMS-----AFGLSRQLAISRMEAKKYMDLYFQRYPNVQTFMHDIQEKA 838 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + L G L + +G V Sbjct: 839 KAQGFVETLFGRRLYL---------PDIKSGNASRRKGAERVAINAPMQGTAADII---- 885 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + D+ + DI Sbjct: 886 -----------------KRAMIDIDHVIAGDE--------------------------DI 902 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 L M + VHDE+V E L M +PL E Sbjct: 903 L---MI----------MQVHDELVFEVRSEKVEFYSELIKQKMETAAQ--LDVPLIVEAG 947 Query: 669 EAKRY 673 + Sbjct: 948 VGANW 952 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 570 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 111/710 (15%), Positives = 204/710 (28%), Gaps = 165/710 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + D ET S A QA + + A Sbjct: 406 VAFDTETTSLD----------AMQAELVGVSLATAPGKACYVPLAHVDGEGDLLGGGGLV 455 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 L L D V+ +A N ++ ++ + G++I + T +L+ Sbjct: 456 EGQIPLAEALDVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAP--YDDTMLLSYVLD 512 Query: 105 LPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157 + L+ + K G KA++ + Y A+ ++ W+ Sbjct: 513 AGKGGNGMDELAERWLDHTPIPFKEVAGSGKAMVTFDKVPIDKATAYAAEDADVTLRLWR 572 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + + AT +++ L ER + + + RG +D ++ +L AQ Sbjct: 573 VLKPRLVAERMAT--VYETL------ERPMVPVLARMERRGISVDRQMLSRLSGDFAQGM 624 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-Q 272 L+ +I L G + L LF G+ ++ T S+L Sbjct: 625 AALEAEIHALA-GESFNIGSPKQLGDILFGKMGLPGGKKTKTGAWSTSVSVLDDLAAEGH 683 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 I+ S + L + + + T ++ TGR S QN+P Sbjct: 684 ELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRLSSSEPNLQNIP- 742 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ AD + IE RVLA + Sbjct: 743 -----------------------VRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHM 779 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A +AFA+G DI+ T ++ F PI+ + R K + Sbjct: 780 ADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINF--------------G 825 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + L K + Sbjct: 826 IIYGISAFGLAAQL------------------------------GLSRGEAGDYIKTYFE 855 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + G+ + + + R+ Y D Sbjct: 856 RFPGIRDYMEAIKKEVHTKGYVTTVF--------------------------GRKAHYPD 889 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVL 626 V L Y +Q + DI+ M +++L Sbjct: 890 VNTSNPSLR---------AFYERAAINAPIQGSAADIIRRAMVRMDAALAAAKLDAEMLL 940 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ + + +M P+ +PL+ + A + Sbjct: 941 QVHDELIFEVPEDQVEATIPVVRRVMETATEPALTLSVPLQVDARAADNW 990 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 196/716 (27%), Gaps = 178/716 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 A + L L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + Sbjct: 498 GTGSHGMNPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRATA 542 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 +AQ +++I L L LF G+ ++ T +L Sbjct: 603 DLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLED 661 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 I++ + + L ++ + T ++ TGR S Sbjct: 662 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPN 721 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G KL+ AD + IE Sbjct: 722 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIEL 757 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 758 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF--------- 808 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 809 -----GIIYGIS------------------------------AFGLANQLSIPREEAGQY 833 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + G+ + R Sbjct: 834 IRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------GR 867 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R Y D++ + R +Q + DI+ M Sbjct: 868 RAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKENL 918 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + +M P+ + +PL+ + A + Sbjct: 919 AARMLLQVHDELIFEVPENEVEKTIPVVRHVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 103/710 (14%), Positives = 201/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + +D ET S + QA + + A T + Sbjct: 350 YVAVDTETTSLNEM----------QADLVGISLAIAPGRACYIPLTHKDGAADDLFGSDK 399 Query: 52 ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L D ++ + N ++ +F GI + T +++ Sbjct: 400 MAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFA-ARGITVEP--IDDTMLMSYA 456 Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K G K + ++ Y A+ ++ Sbjct: 457 LHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPVDEAVKYAAEDADITLRL 516 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W F R T +++ L ER L + + G ++D + + AQ Sbjct: 517 WLTFKPQLHRARVTT--VYETL------ERPLVPVLAQMERYGVKVDRATLRAMSGKFAQ 568 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILSHSNIT 271 + L+ +I +L G + L LF G+ + T +L Sbjct: 569 KMAALESEIHELA-GRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAYATGADVLEDLATE 627 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + + D GR+ + GA+ TGR + QN+ Sbjct: 628 HELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGAN-TGRLASTDPNLQNI 686 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A++G +LV D + IE R+LA Sbjct: 687 P------------------------VRSEEGRRIREAFVAASGHRLVSLDYSQIELRILA 722 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +A + +AF G DI+ T ++ FN P+D+++ E R K + Sbjct: 723 HVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINF------------- 769 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + + Sbjct: 770 -GVIYGISGF------------------------------GLARNLRIPRSEAQGFIDRY 798 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + R++ Sbjct: 799 FERFPGIKDYMDATVAFAKEHGY--------------------------VQTLFGRKIHT 832 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + S R +Q + DI+ M ++L Sbjct: 833 P----EISAKGPRAGFARRAAINAP------IQGSAADIIRRAMIRMPDAIEGLPCKMLL 882 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + + + +M P+ +PL + + + Sbjct: 883 QVHDELIFEVAEEATDRLIEIARDVMQGAASPAVHLDVPLVVDAGQGVNW 932 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 106/704 (15%), Positives = 190/704 (26%), Gaps = 170/704 (24%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPS 55 D ET S P+ QA I ++A + + + Sbjct: 359 FDTETDSLDPM----------QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLA 408 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113 L +L + V N+ ++R + GI + T ++ ++ Sbjct: 409 QLKPWLENPAAAKVLQNANYDRHVLANH-GIRLAGVA-DDTMLMDYVLASHERHNMDAMA 466 Query: 114 LA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + + GK Y D + T Sbjct: 467 ERELGLATIKYEDICGKG---------------ARQIGFAEVDLDTATRYAAEDADVTLR 511 Query: 173 LFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L L DG E + + G ID + + +++ +E ++ + Sbjct: 512 LRDVLAGKLDGARDTLYSSIELPTAAVLFAMERTGVLIDRAELARQSQVLGEEMLAIETE 571 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDL 277 + +L + L LF ID T +S+L Sbjct: 572 VYELAGQPF-NLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKA 630 Query: 278 ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + + L ++ D GR+ TGR + QN+P Sbjct: 631 LLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASV-VTGRLASSDPNLQNIP----- 684 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G +V AD + IE R++A ++G+ Sbjct: 685 -------------------IRTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDA 725 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I AF G DI+ T ++ F P++ VS EQR G Sbjct: 726 GLIAAFREGRDIHRATASEVFGVPLEAVSAEQRRYA--------------KTINFGLIYG 771 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A ++ A + + + A++ G Sbjct: 772 MS------------------------------AFGLAKSLEIDNKAAQTFIERYFARYPG 801 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + E + RRL +++ Sbjct: 802 VQDYMQRTREAAREQG--------------------------WVETVFGRRLYLPEIRSS 835 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHD 630 + + +Q + D++ M + +++ VHD Sbjct: 836 NAARRAGAERA---------AINAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHD 886 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P+ V L M A +PL AE + Sbjct: 887 ELVLEVPEAERERVCAALPQEMAAVAGLA--VPLVAEVGSGANW 928 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 113/700 (16%), Positives = 205/700 (29%), Gaps = 154/700 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 380 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 429 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 430 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 487 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + D Sbjct: 488 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 546 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E+++++ E + + + G +ID + + + E KL++ Sbjct: 547 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAA 599 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 600 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 658 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 659 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 708 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 709 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 753 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + G+ Sbjct: 754 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLIYGMGQY 799 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A + + + + A++ GV + Sbjct: 800 ------------------------------GLAKSLGIDNLSAKTFIDRYFARYPGVAEY 829 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E A + RRL D++ + Sbjct: 830 MQRTKEQAAAQGY--------------------------VETLFGRRLYLPDIRNKNA-- 861 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVS 634 A + R +Q + D++ M + ++ +++ VHDE+V Sbjct: 862 -NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVL 914 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ V L +M K +PL AE + Sbjct: 915 EVPEAELDLVKEKLPQIMEKVDEGMLNVPLVAEVGVGMNW 954 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 832 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 198/717 (27%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 100 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 149 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 150 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 206 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 207 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 251 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 252 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 311 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 312 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 370 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I++ + + L ++ + T ++ TGR S Sbjct: 371 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 430 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R+ IA G KL+ AD + IE Sbjct: 431 NLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQIE 466 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + Sbjct: 467 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 518 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 519 ------GIIYGIS------------------------------AFGLANQLSIPREEAGQ 542 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ + Sbjct: 543 YIRTYFERFPGIKDYMEATKAFAREHGYVETIF--------------------------G 576 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR Y D++ + R +Q + DI+ M Sbjct: 577 RRAHYPDIRASNP---QVRAFNERAAINAP------IQGAAADIIRRAMIRMEDALAKEN 627 Query: 621 -GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 628 LAARMLLQVHDELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 684 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 106/728 (14%), Positives = 204/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLMHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 406 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VAGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHT 687 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 688 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 722 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 723 FIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 782 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 783 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 837 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + + L G L + + + +A + V Sbjct: 838 SASKKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 888 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 889 AMIGIDKA------------------IRGDEN---------------------------- 902 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 903 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 945 Query: 666 EGYEAKRY 673 E + Sbjct: 946 EVGVGDNW 953 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 109/707 (15%), Positives = 197/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 +D+ET S PL +A I ++++ + + + Sbjct: 316 FAVDLETTSLNPL----------EAEIVGISFSFREHEAYYIPVGHRYPGAPHQLSRDDV 365 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLK 110 L L D + N ++ + ++ GID+ W T + + L Sbjct: 366 LGALKPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGI-WCDTMLASYLLNPTRTSQGLD 423 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ GK + + Y D +A Sbjct: 424 SLAVEFLDHRMISYAEVAGKGKEQ---------------KNFAQVEVEKASVYSCEDADA 468 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L K +P + E L + + G ++DL L+ +L + + Sbjct: 469 TYLLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLAD 528 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274 L+ +I L G + L LF + + ++ T L Sbjct: 529 LEREIFALAGGEF-NVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEI 587 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + S + L + V + GR+ + + TGR S QN+P Sbjct: 588 ARLILQYRSLSKLKSTYTDALPKLVDAASGRVHTSYNQAV-TNTGRLSSSEPNLQNIP-- 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G L+ AD + IE RVLA ++ Sbjct: 645 ----------------------IRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + AFA EDI+ T A+ F V++E R K + Sbjct: 683 ADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTIN----------------- 725 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + A + + + + A+ Sbjct: 726 ---------------------------FGVIYGQGAFSLARELGVSTKVAKEFIDNYFAR 758 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H G + RRL D+ Sbjct: 759 HAGARTFLDGCVREAEDNGYVTTIL--------------------------GRRLPIPDI 792 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 K + + +Q + DI+ + M +++ Sbjct: 793 KSSNGNIRAFAQRN---------AVNYPIQGSAADIIKQAMVRVVDRMEREGMKSRLIMQ 843 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ ++ L M + +PL+ + + + Sbjct: 844 VHDELVFEVPEEEKLAMEMLVKHEMEHAVT--LRVPLRVDMNFGRNW 888 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 378 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 482 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 542 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 112/728 (15%), Positives = 209/728 (28%), Gaps = 185/728 (25%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS---- 55 M++L +D ET + A QA + ++ ++ + + Sbjct: 353 MAELVAVDTETDNLD----------AMQANLVGISFGLENGEACYIPLAHKGKITQPTQV 402 Query: 56 ----------------------------DLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 L L + + + N ++ +F + GI+ Sbjct: 403 DLFGESEAELDEVEALLPNQLNKADCLVQLKPILENPNIRKIGQNIKYDLTIFARN-GIE 461 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ N L + GK Sbjct: 462 LQGVAF-DTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEELAGKGKHQL---------- 510 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 EY D E T +L + L E L + Sbjct: 511 -----TFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSR 565 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ID +L I Q K+L+ + + G + + T L+ LF G+ + Sbjct: 566 VERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEA-GEVFNLASTKQLQEILFNKLGLPI 624 Query: 254 ----VDMSEGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L + L++ S + L + ++ GR+ Sbjct: 625 LKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHT 684 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 685 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEQGRRIRQA 719 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G ++ AD + IE R++A +A + IKAFA G+DI+ +T A+ F P++ V+ E Sbjct: 720 FIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSE 779 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + L +++ Sbjct: 780 QRRSAKAINFGLIYGMS-----EFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIRE 834 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 + E + L G L + + + + +A + V Sbjct: 835 KAAEKGYVETLFGRRLYL---------PEINSSNQMRRKAAERVAINAPMQGTAADIIKV 885 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + R+ Sbjct: 886 AMIGIDQAVRNCE----------------------------------------------- 898 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 DI M + VHDE+V E + + M K +PL A Sbjct: 899 -DI---AMI----------MQVHDELVFEVKADRVEHYTQLIKAEMEKAIE--LKVPLIA 942 Query: 666 EGYEAKRY 673 E + Sbjct: 943 EVGVGSNW 950 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 378 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 481 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 482 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 542 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 902 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 113/699 (16%), Positives = 191/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 ID ET S +P+ QA + + + + + Sbjct: 337 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 386 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L +L D++ V N ++ +F G+ + T + + + + Sbjct: 387 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 444 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN + GK EY D + T Sbjct: 445 ALRHLNRKTMTFQDVCGKGASQLC---------------FDQVDIARATEYAAEDADITL 489 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L +R+ P E ++ Q + G ID L+ + + ++ Sbjct: 490 QLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEI 549 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 ++ +L + + F + S T + +L Sbjct: 550 EQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPK 608 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L + + GR+ A TGR S QN+P Sbjct: 609 LLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIP---- 663 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +V AD + IE R++A I+ + Sbjct: 664 --------------------IRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISED 703 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA GEDI+ T A+ F VS EQR KV+ L Y Sbjct: 704 ENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMS-----AFGLAG 758 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L +++ + F + + + + + + G L Sbjct: 759 NLGIERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWL---------P 809 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G Sbjct: 810 EINSPNGPRRQGAERAAINAPMQGT----------------------------------- 834 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 KL VQ D L A K +++ VHDE+V E Sbjct: 835 ---------------AADLIKLAMIAVQ----DWL-----EAEKLQTKMIMQVHDELVLE 870 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+T V L LM +PL AE K + Sbjct: 871 VPETELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 907 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 193/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N ++ + + GI++ + T + + + Sbjct: 403 LAQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLDEASPYAAEDADV 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA Sbjct: 506 TLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLD 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVINKTPSGTPSTNEEVLQELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ I+ VS EQR K + Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 796 YPGVMQYMEDTRSAASEQG--------------------------FVETIFGRRLHLPEI 829 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + +LM +PL AE + Sbjct: 881 QVHDELVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 193/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + + ++A D+ + Sbjct: 353 FAFDTETDSLDYMVTN----------LVGVSFATDEGVAAYVPLAHDYLDAPQQLDRDWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ + T + + + Sbjct: 403 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLNEAAPYAAEDADV 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA + Sbjct: 506 TLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ I+ VS EQR K + Sbjct: 720 GDQALLDAFRDGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 796 YPGVMQYMEDTRSAAAEQGYVETIF--------------------------GRRLHLPEI 829 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG---YDIVL 626 + R +Q + DI+ + M ++G +++ Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVGRWIEEHGDGRVKLLM 880 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL A+ + Sbjct: 881 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVADAGHGDNW 926 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 191/706 (27%), Gaps = 169/706 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 ID ET S L A I +++ + + Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L D + + ++R +F GI++ T + + + P L + Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + GK Y D + T Sbjct: 456 AERHTGRTGISYEDLCGKGAKQ---------------IPFSQVPVDKAAAYSCEDSDQTL 500 Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ + L P + E I G ID D + + Q +L+ Sbjct: 501 DVHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLE 560 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 ++ + + L F G+ +V + T + +L Sbjct: 561 QEAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 619 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + S + L++ GR+ A TGR S QN+P Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 673 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + D + IE R++A I+G++ Sbjct: 674 -------------------IRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF G D++ T A+ F + +V+ EQ Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQ---------------------------- 746 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + L A + TA + + ++ G Sbjct: 747 ----------------RRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQRYPG 790 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V Q +D RRL ++ Sbjct: 791 VWQYMQDTKAQAKARGYVETVF--------------------------GRRLYLPEINSP 824 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 +A R +Q + D++ + M +++ VHD Sbjct: 825 NGPRRSAA---ERAAINAP------MQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHD 875 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V E P+ + + +M +PL AE + K Sbjct: 876 ELVFELPEGDVNWLRAEVPRIMAGVAE--LKVPLLAEVGVGPDWDK 919 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 108/728 (14%), Positives = 205/728 (28%), Gaps = 186/728 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 318 KLVAVDTETDNLDSM----------SANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSD 367 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 ++L L + V + N ++ +F G+ Sbjct: 368 LFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANH-GVQ 426 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 427 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 475 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 476 -----TLDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 530 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G + + T L+ LF G+ Sbjct: 531 IERNGVLIDPEKLLAQSAEIEQRLAELEQLVH-SEAGEVFNLASTKQLQEILFTKLGLPV 589 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L L++ S + L ++ GR+ Sbjct: 590 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHT 649 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 650 SYHQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQA 684 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+V+ E Sbjct: 685 FIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSE 744 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y L + + F+ + + +++ Sbjct: 745 QRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 799 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANV 546 E + L G L + + + +A + V Sbjct: 800 SASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAINAPMQGTAADIIKV 850 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + + ++GD + Sbjct: 851 AMIGIDKA------------------IRGDDN---------------------------- 864 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + M VHDE+V E + + + M K +PL A Sbjct: 865 ---IKMIM------------QVHDELVFEVKEELVEHYSQLIKAEMEKAIQ--LKVPLIA 907 Query: 666 EGYEAKRY 673 E + Sbjct: 908 EVGVGDNW 915 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 465 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 510 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 570 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 629 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 724 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 770 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 799 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 800 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 831 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 832 --EITSRNVMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 883 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 884 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 930 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ ++ T + + + Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA + Sbjct: 507 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ ID+VS EQR K + Sbjct: 721 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 797 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 881 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 882 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 102/731 (13%), Positives = 193/731 (26%), Gaps = 192/731 (26%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET S A +A + + A Sbjct: 459 IAVDTETDSLD----------AHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADATDLF 508 Query: 51 ----------SAMP---------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 +P + L L + V+ V N ++ ++ + GI++ Sbjct: 509 GEGAAPSDVVEPVPGQIPLKEAVARLKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAP- 566 Query: 92 RWICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + T +++ + L G Sbjct: 567 -FDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVAGTG---------------RN 610 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDR 197 A Y D + T L++ + P E L + + R Sbjct: 611 KVTFDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQR 670 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G R+D +++ +L +Q +L+E+I + S + LF G+ + Sbjct: 671 GIRVDREMLSRLSGDFSQILVRLEEEIQEDAGEKF-SVGSPKQIGDILFGKMGLPGAKKT 729 Query: 258 EG----TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 T ++L IL S + L + T Sbjct: 730 PSGQWATPATLLEELAQAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSL 789 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A+ TGR S QN+P +R +A+ Sbjct: 790 AATTTGRLSSSEPNLQNIP------------------------IRTEEGRRIRRAFVAAP 825 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G +L+ AD + IE R+LA +A KAF +G DI+ T + F P+ +++ + R Sbjct: 826 GNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKEMTPDLRRRA 885 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + G+ Sbjct: 886 KTINF--------------GIIYGIS------------------------------AFGL 901 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A + + K + + G+ + + Sbjct: 902 ADRLGIGREEASAFIKQYFEQFPGIRDYIETTKKSCRDKGYVTTLF-------------- 947 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R Y ++ + + + R+ +Q + DI+ Sbjct: 948 ------------GRVCHYPQIRSNNPSERAS---VERQAINAP------IQGSAADIIRR 986 Query: 613 GMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPL 663 M ++L VHDE+V E + + +M + P+ A +PL Sbjct: 987 AMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKVPL 1046 Query: 664 KAEGYEAKRYR 674 E A ++ Sbjct: 1047 VVEANAAGNWQ 1057 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 113/699 (16%), Positives = 191/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 ID ET S +P+ QA + + + + + Sbjct: 343 AIDTETTSLEPM----------QAQLVGISLCCEPGVAAYIPVAHRYQDVPLQLSRASVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L +L D++ V N ++ +F G+ + T + + + + Sbjct: 393 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN + GK EY D + T Sbjct: 451 ALRHLNRKTMTFQDVCGKGASQLC---------------FDQVDIARATEYAAEDADITL 495 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L +R+ P E ++ Q + G ID L+ + + ++ Sbjct: 496 QLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLEI 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 ++ +L + + F + S T + +L Sbjct: 556 EQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L + + GR+ A TGR S QN+P Sbjct: 615 LLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +V AD + IE R++A I+ + Sbjct: 670 --------------------IRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISED 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA GEDI+ T A+ F VS EQR KV+ L Y Sbjct: 710 ENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMS-----AFGLAG 764 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L +++ + F + + + + + + G L Sbjct: 765 NLGIERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWL---------P 815 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G Sbjct: 816 EINSPNGPRRQGAERAAINAPMQGT----------------------------------- 840 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 KL VQ D L A K +++ VHDE+V E Sbjct: 841 ---------------AADLIKLAMIAVQ----DWL-----EAEKLQTKMIMQVHDELVLE 876 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+T V L LM +PL AE K + Sbjct: 877 VPETELALVRVKLPELMRNVAQ--LKVPLIAEVGVGKNW 913 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 103/708 (14%), Positives = 193/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N ++ + + GI++ + T + + + Sbjct: 403 LAQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLDEASPYAAEDADV 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA Sbjct: 506 TLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLD 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ I+ VS EQR K + Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 796 YPGVMQYMEDTRSAASEQG--------------------------FVETIFGRRLHLPEI 829 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + +LM +PL AE + Sbjct: 881 QVHDELVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 309 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 358 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 359 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 416 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 417 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 461 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 462 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 521 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 522 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 580 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 581 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 637 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 638 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 675 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 676 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 721 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 722 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 751 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 752 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 783 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 784 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 835 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL A+ + Sbjct: 836 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVADAGHGDNW 882 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 196/703 (27%), Gaps = 162/703 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + + A I ++A + ++ Sbjct: 331 FAFDTETTSLRYM----------DAEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGL---PSSL 109 L L D V N +++ + DI + T V + + Sbjct: 381 LEQLKPLLEDPKHKKVGQNLKYDKNVLANH---DIQLEGIAEDTMVESYVLNSVGTRHDM 437 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + G Y D + Sbjct: 438 DSLARTYLDEETITYESIAGKGAKQL---------------TFNQIDLESAGPYAAEDAD 482 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P + + L + + RG I + + + +A+ Sbjct: 483 ITLRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERM 542 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILSHSNITQL 273 +L+++ ++ G + T L+ L+ G+ + T + +L Sbjct: 543 AELEKEAHEVA-GEAFNLGSTKQLQAILYDKLGLRVIKKTPKGAPSTAEPVLQELAHEHE 601 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LI+ + S +TL E + GR+ + + TGR S QN+P Sbjct: 602 LPRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAV-TATGRLSSSEPNLQNIP- 659 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G KL+ AD + IE R++A + Sbjct: 660 -----------------------IRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHL 696 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +GEDI+ T A+ F +D+V+ +QR K + L Y Sbjct: 697 SGDRGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMS-----AFG 751 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L++ + + FE + + ++ Q + + L G L Sbjct: 752 LSRQLEVDRKTAQEYIDRYFERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYL------- 804 Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + K L + + +A + + + Sbjct: 805 --PEINARNKQLQQAAERTAINAPMQGTAADIIKRAMIEVDN------------------ 844 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 +R A + Sbjct: 845 ---------------WLRSEH-----------ASDACMTM----QVHDE----------- 863 Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E + V L M+ S +PL E + Sbjct: 864 LIIEVREEAVDKVKDGLVKRMSAAAS--LDVPLLVEAGVGDNW 904 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 194/707 (27%), Gaps = 169/707 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S L A I +++ + + Sbjct: 353 VALDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 L +L D + + + ++R +F GID+ T + + P +L + Sbjct: 403 LERLKPWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYA-HDTMLQSYVLEVHRPHNLAS 460 Query: 112 ACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + GK + Y D + T Sbjct: 461 LAERHTGRTGISYEDLCGKGAKQ---------------IPFAQVPVEQAAAYSCEDSDQT 505 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ + L PL + E + + I G ID + + + Q +L Sbjct: 506 LDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276 +++ + + L F G+ +V + T + +L Sbjct: 566 EQEAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKTATGARSTDEEVLEKLAEDYPLPA 624 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL + S + L + GR+ A TGR S QN+P Sbjct: 625 KILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYAQAVA-VTGRLSSNEPNLQNIP---- 679 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G+ + AD + IE R++A ++G+ Sbjct: 680 --------------------IRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 D ++AF G D++ T A+ F +D+VS EQ Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQ--------------------------- 752 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + A + ++ Sbjct: 753 -----------------RRYAKVINFGLIYGMSSFGLARNLGIDNKAAAAYIDRYFQRYP 795 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q + RRL ++ Sbjct: 796 GVKQYMDETKASAKARGYVETVF--------------------------GRRLYLPEINS 829 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 A R +Q + D++ + M K +++ VH Sbjct: 830 PNGPRRGAA---ERAAINAP------MQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVH 880 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V E P+ + + LM +PL AE + K Sbjct: 881 DELVFELPEEESGWLRTEVPRLMAGVAE--LKVPLLAEVGMGPNWEK 925 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 187/703 (26%), Gaps = 161/703 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A I +++ T + Sbjct: 370 VAVDTETTSLDEML----------AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEV 419 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L + + + + ++R +F GI++ T + + + P L + Sbjct: 420 LARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVHKPHGLAS 477 Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 S + GK I + EY D + Sbjct: 478 LAERHVGRSGINYEDLCGKGVHQIKFNQVDIAKAA-----------------EYSCEDSD 520 Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T ++ + L P + E I G ID + K + Sbjct: 521 QTLDVHRVLWPQIEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIV 580 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ + +L + + F G+ + T + +L Sbjct: 581 QLEAEAHELAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPL 639 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL S + L++ GR+ A TGR S QN+P Sbjct: 640 PAKILEHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP-- 696 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR +A G + AD + IE R++A ++ Sbjct: 697 ----------------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLS 734 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ ++AF G D++ T A+ F +D+VS EQR KV+ L Y + Sbjct: 735 EDEALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMS-----SFGL 789 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L ++ + F+ + + + + + + G L Sbjct: 790 ARNLGIETKAAAAYIDRYFQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYL-------- 841 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G +L V Sbjct: 842 -PEINSPNGPRRGGAERAAINAPMQGTAADLI---------------------KLSMVKV 879 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + AT M + VHDE+V Sbjct: 880 QEVLDAEKRATK----------------------------MI----------MQVHDELV 901 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P+ V + +M +PL AE + K Sbjct: 902 FEVPEAEVEWVRVEIPRIMAGVAD--LRVPLLAEIGVGPNWDK 942 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 117/707 (16%), Positives = 205/707 (28%), Gaps = 168/707 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 355 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 404 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 405 VLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 462 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK A + EY +D + Sbjct: 463 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 507 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 508 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 567 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ G + + L+ LF GI ++ T +++L Sbjct: 568 EQEAYAAA-GQLFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 627 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 684 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + Sbjct: 722 GDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGL 767 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + A+ Sbjct: 768 IYGMGQY------------------------------GLAKSLGIDNLSAKTFIDRYFAR 797 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + E A + RRL D+ Sbjct: 798 YPGVAEYMQRTKEQAAAQG--------------------------FVETLFGRRLYLPDI 831 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 + + A + R +Q + D++ M + ++ +++ Sbjct: 832 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 882 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P++ V T L LM +PL AE + + Sbjct: 883 VHDELVLEVPESELDLVKTNLPELMADVGKGLLNVPLVAEVGVGENW 929 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 D ET S + QA + + A Sbjct: 334 FFAFDTETTSLNYM----------QARLVGFSMAIRPGTAAYVPLGHDYPGAPDQLDFEQ 383 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + L L + ++ + N ++ + GI + T + + + Sbjct: 384 VLAKLKPILENADILKLGQNLKYDSNILCNH-GITLRGIT-EDTMLESYVLDSVGTRHDM 441 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + A + Y D + Sbjct: 442 DSLALKYLGRGTTKFQDIAGKGAKQL---------------TFNQIALEQAAPYAAEDAD 486 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P + E L + I G I + +A Sbjct: 487 VTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELAGRL 546 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + L+ +L + L LF G+ + T + +L Sbjct: 547 ESLEARAQELAGQAF-NLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLELAEDYP 605 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ + S + L E + D GR+ + + TGR S QN+P Sbjct: 606 LPSVLMEYRSLSKLKSTYTDRLPEVIDPDTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 663 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G++++ AD + IE R++A + Sbjct: 664 -----------------------IRTEEGRRIRQAFVAPEGRRILAADYSQIELRIMAHL 700 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++AF+ G D++ T A+ F ++ V+ +QR K + Sbjct: 701 SRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKAKAINF--------------G 746 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + + Sbjct: 747 LIYGMS------------------------------AFGLARQLHIGRGEAQEYIERYFS 776 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + RRL + Sbjct: 777 RYPGVADYMARTRAEAHERGY--------------------------VETHFGRRLQLPE 810 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 811 INAKN---KQRQLAAERTAINAP------MQGTAADIIKKAMIAVDAWLQDSSLDALLIM 861 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +T + L SLM A +PL E + Sbjct: 862 QVHDELVFEVAETAVAQLSEALPSLMADVA--ALEVPLLVEAGVGANW 907 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 208/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 313 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 362 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 363 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 420 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A + +Y D + Sbjct: 421 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADV 465 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 466 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 525 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+++ +L + L+ LF + + T + +L + Sbjct: 526 QLEQNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 584 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 585 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 641 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 642 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 679 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 680 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 725 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 726 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 755 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 756 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 787 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 788 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 839 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 840 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ ++ T + + + Sbjct: 403 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA + Sbjct: 506 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGAPSTNEEVLQELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ ID+VS EQR K + Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 796 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 829 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 830 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 881 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 926 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 197/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP---- 54 + ID ET S + +A + ++A + + Sbjct: 341 IAIDTETTSLNYM----------EAKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVV 390 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++ +F GI + ++ T + + ++ Sbjct: 391 FEKLQPLLEDENLKKVGQNLKYDISIFANA-GICLLGVQF-DTMLESYVFNSVASKHNMD 448 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + + Y D + Sbjct: 449 DLALKYLGHKNISFEEIAGKGVKQL---------------TFNQISLETAAPYAAEDADI 493 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L TI +G ID L+ + E +A++ Sbjct: 494 TLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKID 553 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ ++ + L+ F G + T + +L + Sbjct: 554 ELEHKAHEIAGQAF-NLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPL 612 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ GR+ + A TGR S QN+P Sbjct: 613 PKIILEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 669 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA GKK++ AD + IE R++A ++ Sbjct: 670 ----------------------IRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLS 707 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F+ +V+ +QR K + L Y Sbjct: 708 QDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMS-----AFGL 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F+ + + + + L G L Sbjct: 763 AKQLDIPRSEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYL-------- 814 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 815 -PAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 850 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + T G I+ M + VHDE+V Sbjct: 851 ---------NIANWIETETDGE-------------II---MI----------MQVHDELV 875 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + S+ +C LM + L AE + Sbjct: 876 FEVDEAKADSLQAKVCELMAAAAK--LDVELLAEAGIGDNW 914 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 105/711 (14%), Positives = 197/711 (27%), Gaps = 167/711 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + + + A Sbjct: 347 TVAVDTETTGLNEMLC----------DLVGISLAVAPGEACYIPLAHLAEDGGEGLFASD 396 Query: 51 ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 L L D +VM + N ++ +F + GI+I T +++ Sbjct: 397 AKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY-GIEIAP--IDDTMLMSY 453 Query: 102 TNGLP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQ 154 + L + K GK+ I + Y A+ ++ Sbjct: 454 ALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDKATGYAAEDADITLR 513 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 F R +++ L ER L + + + RG ++D + ++ A Sbjct: 514 LALTFKPQLHRAHVT--RVYETL------ERPLVPVLKAMEMRGIKVDRATLSRMSGKFA 565 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI 270 Q+ +L+E+I L + L LF + + T +L Sbjct: 566 QKMAELEEEIHALAGEKF-NVGSPAQLGDILFEKMSLPGGKRGKNGKYSTPADVLEDLAT 624 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L+ S + L E ++ D GR+ + GA+ TGR + QN Sbjct: 625 EHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAGAN-TGRLASNDPNLQN 683 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G LV D + IE R+L Sbjct: 684 IP------------------------VRSEEGRRIREAFVAPEGHTLVSLDYSQIELRIL 719 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A +A D +AF +G DI+ T ++ FN P+D+++ + R K + Sbjct: 720 AHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAIN------------- 766 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G+ A ++ + Sbjct: 767 -FGVIYGISGF------------------------------GLARNLRIPRAEAQGFIDR 795 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + G+ Q D + + R + Sbjct: 796 YFERFPGIKQYMDDTVKFA--------------------------NEHKRVETMFGRVIH 829 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIV 625 + R +Q + DI+ M K ++ Sbjct: 830 TP----EIGAKGPRAGFAKRAAINAP------IQGTAADIIRRAMVRMPDAIAKLPAKML 879 Query: 626 LTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 L VHDE++ E D + + +M P +PL + + + Sbjct: 880 LQVHDELIFEVEDGAAGDLIDVAREVMQNACDPVVKLDVPLVVDAGQGANW 930 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 354 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ ++ T + + + Sbjct: 404 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 462 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA + Sbjct: 507 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 567 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLHELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 626 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ ID+VS EQR K + Sbjct: 721 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 766 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 767 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 796 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 797 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 830 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 831 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 881 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 882 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 927 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 197/707 (27%), Gaps = 169/707 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + D ET S A +A + ++A + Sbjct: 316 RFAFDTETTSLV----------ATRADLVGISFAIKPGEGWYLPVGHRYLGVPEQLDRAL 365 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + L + D + +A N+ ++ ++ ++ G+++ T + + L Sbjct: 366 VIDKLRPLMADTQLAKIAQNAKYDLLVLRRA-GLEVAGLSC-DTMLASYLANPAAKSHGL 423 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + + Y D + Sbjct: 424 DTLASELLGYRTIGYTEVTGKGKKQIGFEEV---------------EIEKATVYATEDAD 468 Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +L P E L + + +G RID D + L + Sbjct: 469 ITLRLADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLA 528 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L+ +I +L+ G + L LF + ++ T +L++ Sbjct: 529 TLEGEIHELS-GRSFNVASPKQLGEVLFEHLKLPRGKKTKTGWSTDVEVLTNLAEEHPIA 587 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L+ + + + L + + D GR+ + + TGR S QN+P Sbjct: 588 ARVLDYRSVAKLKSTYCDALPKLIHPDTGRIHTSFNQAV-TATGRLSSSDPNLQNIP--- 643 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + + G L+ AD + +E R+LA +A Sbjct: 644 ---------------------IRTEEGRRIREAFVPAEGNLLLAADYSQVELRILAHMAD 682 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 E ++FA+GEDI+ T ++ F ++ V+ E R K + Sbjct: 683 EPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTIN--------------FGVL 728 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + A++ Sbjct: 729 YGMS------------------------------AFGLAKSLGIARKEAQTYIDNYFARY 758 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 VL+ + + RR ++ Sbjct: 759 PKVLEFMEAKKAEAREKQYVTTLL--------------------------GRRCAVPEIA 792 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTV 628 + + +Q + DI+ M + +VL V Sbjct: 793 SKNGAVRGYAERN---------AINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQV 843 Query: 629 HDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 HDE+V + P +V L M +PL + + +R Sbjct: 844 HDELVFDMPAAEQAAVENLVREQMEHAFE--LDVPLLVDMGVGRNWR 888 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 108/709 (15%), Positives = 207/709 (29%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 329 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLDRDWV 378 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 379 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 436 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + A Q +Y D + Sbjct: 437 SLALRFLQHSCISFEQVAGKGKNQL---------------TFNQIALQEAAQYAAEDADV 481 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 482 TLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 541 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 542 QLEQKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 600 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 601 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 657 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 658 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 695 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 696 GDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 742 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 771 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 772 YPGVMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP-- 803 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 804 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLL 855 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V E ++ + + LM A +PL AE + Sbjct: 856 MQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGGNW 902 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 103/696 (14%), Positives = 190/696 (27%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQS--AMPSDL 57 L +D ET S P+ +A + ++A + + + + Sbjct: 348 KILSLDTETTSTNPM----------EAELVGLSFAVEPKKAFYVPVPAKHEDAVNLVKIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E ++ V N ++ + + GI++ T + L ++ Sbjct: 398 KPLYENEEIVKVGQNIKYDMEVLRNY-GIELKG-PMFDTMIAHYVLQPELRHNMDYMAEV 455 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ + LI K + T Y D + T +L Sbjct: 456 YLNYQTIHIE-----KLIGERGKNQKNMRDLSPTD---------VYLYACEDADITLQLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G RID + + + E + L+ I Sbjct: 502 NALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 +L G + + LF I + ++ T + L LIL Sbjct: 562 HELA-GESFNVSSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAGNEIVTLIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L + ++ G + + + TGR S QN+P Sbjct: 621 DYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQTV-TATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G +R C I +G AD + IE RV+A ++G+ Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G DI+ T AK + + V++++R K + Y L Sbjct: 716 IEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLG 770 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + F + Q + + E + R + Sbjct: 771 IDRNEAKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETFFHR---------RRYLPDIN 821 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + Sbjct: 822 SRNATVRGFAERNA----------------------------------------INAPIQ 841 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 ++ R Y EN +Q ++L VHDE+ Sbjct: 842 GSAADIIKVAMIRIYKRFKREN-IQ------------------SKMILQVHDELNFSVLP 882 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+G K + Sbjct: 883 EEKEQVERIVMEEMQNAYP--LRVPLIADGGWGKNW 916 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|294840299|ref|ZP_06784982.1| DNA polymerase I [Acinetobacter sp. 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] Length = 923 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 VLAQIKPILENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 108/707 (15%), Positives = 194/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLL 58 ID+ET S P +A + A + + + +P L+ Sbjct: 316 FAIDLETTSLNP----------REARVVGYAVSCRPHEARYIPVGHRYLGAPEQLPEALV 365 Query: 59 -----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L+D + N ++ + + G ++ W T + A L Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVL-RMAGFEMEGI-WCDTMLAAYLVNPARNSQGLD 423 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ G C G Y D +A Sbjct: 424 ALALEYLDHRMISYAEVAGSG---------------KCELNFSEVDLDRAGPYSCEDADA 468 Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L+P D E L + + G ++D+DL+ +L ++ + Sbjct: 469 TYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIE 528 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274 L+ I + G + L LF G+ + ++ T L Sbjct: 529 LEAQIHEHCGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEV 587 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + S + L + V GR+ + + TGR S QN+P Sbjct: 588 ARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIP-- 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 G +R IA G ++ AD + IE RVLA ++ Sbjct: 645 ----------------------IRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ +AFA GEDI+ T ++ F + V+ E R Sbjct: 683 GDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQA--------------------- 721 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + A + + + ++ + Sbjct: 722 -----------------------KVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H G + RRL ++ Sbjct: 759 HSGARSFLDSCIREAEVCG--------------------------FVTTIMGRRLCIPEI 792 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 + + +Q + DI+ M + +++ Sbjct: 793 ASKNGNVRAFAQRN---------AVNYPIQGSAADIIKAAMLRVIRRMQQERVASRLIMQ 843 Query: 628 VHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ + L M +PLK + + Sbjct: 844 VHDELVFEVPEAERDLMEELVRTEMEGALP--LSVPLKVDLNFGLNW 888 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 353 FAFDTETDSLDYMV----------ANLVGLSFATDEGIAAYVPVAHDYLDAPQQLDRDWV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N ++ + + GI++ + T + + + Sbjct: 403 LAQLKPILEDEAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Y D + Sbjct: 461 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELDEASPYAAEDADV 505 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA Sbjct: 506 TLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLD 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 566 ELEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPSTNEEVLQELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +AS G K++ D + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRIRQAFVASTGYKILAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ I+ VS EQR K + Sbjct: 720 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 766 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 795 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D + + RRL ++ Sbjct: 796 YPGVMQYMEDTRSAASEQG--------------------------FVETIFGRRLHLPEI 829 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 + R +Q + DI+ + M +++ Sbjct: 830 QSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 880 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + +LM +PL AE + Sbjct: 881 QVHDELVFEVEESSLSEIESKVQNLMESAAE--LKVPLVAEAGHGDNW 926 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|294839290|ref|ZP_06783973.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013113] gi|294858990|ref|ZP_06796759.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013150] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] Length = 923 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 192/701 (27%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + +A + ++A + A+ Sbjct: 320 FAFDTETTSLNYM----------EAKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAV 369 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 + + L D V N ++ + GI + + T + + + Sbjct: 370 LAQMKPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDY-DTMLESYVLDSTATRHDMD 427 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + + GK + + G Y D + Sbjct: 428 SLALKYLGQNTIHFEDIAGKGAKQL---------------TFNQVKVEEAGPYAAEDADI 472 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + I +G + +++ + + + Sbjct: 473 TLRLHQALWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLE 532 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L +L + L LF + + + T + +L + Sbjct: 533 ELKSAAYELAGQEF-NLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEEVLVELALDYPL 591 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + S + L V+ GR+ + A TGR S QN+P Sbjct: 592 PKLLLEYRSLSKLKSTYTDKLPGMVNPQTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 648 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 649 ----------------------IRTEEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLS 686 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF G+D++ T A+ F +D+VS +QR K + L Y Sbjct: 687 DDPSLLTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMS-----AFGL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L L + FE + + + E + L G L + R K Sbjct: 742 AKQLHLGRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNK 801 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + SA + R ++ D Sbjct: 802 --------MRVQAAERTAINAPMQGSAADIIK--------------------RAMLSVDQ 833 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + N +R I+ +V Sbjct: 834 WLEQGDAN------------------------ARMIM-----QVHDE-----------LV 853 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + +V +C LM+ A +PL E + Sbjct: 854 LEVANDEVDAVSNQVCRLMSGAAELA--VPLLVEAGVGDNW 892 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 112/707 (15%), Positives = 202/707 (28%), Gaps = 161/707 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 353 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F I + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIA-GDSMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I+ + + Y A+ + D Sbjct: 461 ELSERWLGLETITYESLCGKGAKQISFADVAIVQATEYAAQDADFALRLEAHLRAQMDDK 520 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 521 QLEM--------YEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 572 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 573 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 631 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 632 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 681 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 682 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 726 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F T + VS EQR K + G+ Sbjct: 727 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFG--------------LIYGMGQY 772 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 ++++ + + + A++ GV + Sbjct: 773 GLAKSLSIDNIS------------------------------AKNFIDRYFARYPGVAEY 802 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E A + RRL D+ + Sbjct: 803 MQRTKEQAAAQG--------------------------FVETLFGRRLYLPDIHNKNA-- 834 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------------TKNGYDIVLT 627 A + R +Q + D++ M + +++ Sbjct: 835 -NARAGAERAAINAP------MQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIMQ 887 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ V L +M K +PL AE + Sbjct: 888 VHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 934 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 192/703 (27%), Gaps = 168/703 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSD 56 +D ET S A A + + + + + + Sbjct: 370 AVDTETTSLD----------AFAAELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLAR 419 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114 + +L T + V N ++ +F GI + T + + LP ++ + Sbjct: 420 MKSWLESATHLKVGQNLKYDSHIFANY-GITLKGV-VFDTLLESYVLESHLPHNMDSLAE 477 Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + GK + ++ +Y D + T L Sbjct: 478 RHLGMKTIRYEEVCGKGVHQIG---------------FDQVDLKIATDYAAEDADITLRL 522 Query: 174 FKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P E + + G RID L+ K + + + +L+ Sbjct: 523 HLELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEG 582 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLI 278 +I KL + + + LF + + T + +L I Sbjct: 583 EIHKLAGQPF-NIQSPKQIAEILFGQLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPARI 641 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ + + + L GR+ A TGR + QN+P Sbjct: 642 LDYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATA-VTGRLASSDPNLQNIP------ 694 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I + G KL+ AD + IE R++A IA ++ Sbjct: 695 ------------------VRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDEN 736 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AF +G+D++ T A+ F P+D VS EQ Sbjct: 737 LLTAFRDGKDVHQATAAEIFGVPLDDVSSEQ----------------------------- 767 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + L A + +A + + ++ GV Sbjct: 768 ---------------RRYAKVINFGLIYGMSAFGLAGNLGIECSAAQNYIAKYFDRYPGV 812 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 Q + RRL ++KG Sbjct: 813 AQYMERTRLEARENGYVETVF--------------------------GRRLWSPEIKGSN 846 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631 R +Q + D++ M ++L VHDE Sbjct: 847 GPRRQGA---ERAAINAP------MQGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDE 897 Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + P + L +LM +PL + Sbjct: 898 LVFDVPLDEIELLQAKLPNLMCHVAQ--LKVPLAVSIGIGDNW 938 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 116/707 (16%), Positives = 202/707 (28%), Gaps = 168/707 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 350 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 400 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 457 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK A + EY +D + Sbjct: 458 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 502 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 503 ALRLDAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 562 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 563 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 621 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 622 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 678 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 679 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 716 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + Sbjct: 717 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGL 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + A+ Sbjct: 763 IYGMGQY------------------------------GLAKSLGIDNLSAKTFIDRYFAR 792 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + + E A + RRL D+ Sbjct: 793 YPGVAEYMQRTKEQAAAQGY--------------------------VETLFGRRLYLPDI 826 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 + + A + R +Q + D++ M + ++ +++ Sbjct: 827 RNKNA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQ 877 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ V L +M K +PL AE + Sbjct: 878 VHDELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 924 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 200/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGNNW 919 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 202/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ D + + LF GI + T +S+L Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + S+M +PL E + + + Sbjct: 877 DELVFEADQNIAEELSKQIASVMESVVE--ISVPLVVEVGQGQNW 919 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 96/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + QA + ++A Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLWHDYTGAPAQLDKE 373 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + +L L D + N ++ + K G+ I +K + T + + Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + GK + + + Y D Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L++ KL + L+ L+ + + + T +++L + Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + + L V R T + TGR S QN+P Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + +E R++A + Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHV 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + + RR+ D Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + A + +Q + DI+ M + +++ Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + M + A +PL + + Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 113/700 (16%), Positives = 196/700 (28%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A I +++ + Sbjct: 362 VALDTETDSLDGMR----------ARIVGLSFSVQPYEACYIPLAHTYPGAPDQLPLDEV 411 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L D + + N ++ +F GI + T + + P SL++ Sbjct: 412 LAALKSWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGY-VHDTLLQSYVLEAHKPHSLES 469 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ + GK EY D + T Sbjct: 470 LASRHLDRKGLSYEDVAGKGAQQ---------------IPFAQVELTRATEYSGEDSDMT 514 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 ++ + L P + E ++ I G ID L+ + +AQ Sbjct: 515 LDVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVA 574 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275 L+++ L + + LF GI + T + +L+ Sbjct: 575 LEQEAHALAGQPF-NLGSPKQIGEILFNKLGIPAKKKTASGAPSTDEEVLAELAADYPLP 633 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + + + L V++ GR+ A TGR + QN+P Sbjct: 634 AKLLEHRSLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVA-VTGRLASNDPNLQNIP--- 689 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR IA G ++ AD + IE R++A I+ Sbjct: 690 ---------------------IRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHISE 728 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA G D++ T ++ FN P+ +VS EQR KV+ L Y G Sbjct: 729 DPGLLKAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMG-----AFGLA 783 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L ++Q + F + + + + + E + L G L Sbjct: 784 SNLGIEQKAAKDYIDRYFARFAGVKRYMDETRARAKELGYVETLFGRRIYL--------- 834 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + G Sbjct: 835 PEINGGNGPRRTGAERQAINAPMQGT---------------------------------- 860 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 KL VQ +A + +V+ VHDE+V Sbjct: 861 ----------------AADLIKLAMIAVQ---------AALDAQQRATCMVMQVHDELVF 895 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ + LM +PL AE + Sbjct: 896 EVPEAELDWARTAVPELMAGVAE--LKVPLLAEVGVGANW 933 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + QA + ++A Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + +L L D + N ++ + K G+ I +K + T + + Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + GK + + + Y D Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L++ KL + L+ L+ + + + T +++L + Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + + L V R T + TGR S QN+P Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + +E R++A I Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAKEYIDIYFK 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + + RR+ D Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + A + +Q + DI+ M + +++ Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + M + A +PL + + Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 100/709 (14%), Positives = 200/709 (28%), Gaps = 166/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + +D ET S + A + + A + + Sbjct: 348 VAVDTETTSLNEMT----------ADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKL 397 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D ++ + N ++ +F + + T +L+ Sbjct: 398 AEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDAKIFARY---GVAVAPIDDTMLLSYAM 454 Query: 104 G---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ + K + GK+ I ++ Y A+ ++ W Sbjct: 455 HGGLHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVAIDEATAYAAEDADITLRLW 514 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF R T +++ L ER L + + G ++D +++ ++ AQ+ Sbjct: 515 QLFKPQLHRAQVTT--VYETL------ERPLVPVLAEMEMHGVKVDREVLSRMSNAFAQK 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 L+ +I +L + + LF ++ T +L Sbjct: 567 MAGLEAEIHELAGEPF-NVGSPAQVGEILFDKMSLEGGKKGKTGKYSTPADVLEDLATEH 625 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 IL+ S + L ++ D GR+ + GA+ TGR + QN+P Sbjct: 626 ELPARILDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQNIP 684 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G L+ D + IE R+LA Sbjct: 685 ------------------------VRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAH 720 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA +AFA+G DI+ T ++ F+ P+D+++ E R K + Sbjct: 721 IADIPALKQAFADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINF-------------- 766 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 767 GVIYGISGF------------------------------GLARNLRIPRAEAQEFIDRYF 796 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ D + RR+ Sbjct: 797 ERFPGIRTYMDDTIAFAKEHG--------------------------FVQTLFGRRIHTP 830 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + + R +Q + D++ M ++L Sbjct: 831 ----EINAKGPHAGFARRAAINAP------IQGTAADVIRRAMVRMPDAIRDLPAKMLLQ 880 Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + ++ +M P+ + L + + Sbjct: 881 VHDELLFEVAEEAVEDTIAAARDIMEGAADPAVRLDVRLVVDAGRGANW 929 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + QA + ++A Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + +L L D + N ++ + K G+ I +K + T + + Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + GK + + + Y D Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSLELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L++ KL + L+ L+ + + + T +++L + Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + + L V R T + TGR S QN+P Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + +E R++A I Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + + RR+ D Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + A + +Q + DI+ M + +++ Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + M + A +PL + + Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 102/715 (14%), Positives = 211/715 (29%), Gaps = 171/715 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + + T + Sbjct: 347 YVAVDTETTGLNEMI----------AELVGISLCVEAGQACYIPLTHKSAASDDLFGSDE 396 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L+D V+ + N ++ +F + +DI T +++ Sbjct: 397 MAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAKIFAR---LDIDVAPIDDTMLMSYA 453 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ I D+ Y A+ ++ Sbjct: 454 MNAGKHNHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADITLRL 513 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ F + T +++ + ER L + + G ++D D + ++ AQ Sbjct: 514 WQQFKPQLHMNRVTT--VYETM------ERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQ 565 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---------GTLKSILS 266 + L+++I ++ + L LF G+++ D + T +L Sbjct: 566 KMAGLEDEIQEMAGRPF-NVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGADVLE 624 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVF 325 IL+ S + L E ++ GR+ + GA+ TGR + Sbjct: 625 DLATLHDMPRRILDWRQLSKLKSTYTDALQEHINAETGRVHTSYSIAGAN-TGRLASTDP 683 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R +A +GK +V D + IE Sbjct: 684 NLQNIP------------------------VRSEEGRRIREAFVAEDGKVIVSLDYSQIE 719 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA IAG D +AF +G DI+ T ++ F+ P+D+++ + R K + Sbjct: 720 LRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINF-------- 771 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A ++ + Sbjct: 772 ------GVIYGISGF------------------------------GLARNLRIPRGEAQG 795 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + G+ + D + ++ Sbjct: 796 FIDRYFERFPGIRKYMDDTVAFAKE--------------------------NSYVQTLFG 829 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----G 621 R++ + + R +Q + D++ M Sbjct: 830 RKINTP----EINAKGPHAGFAKRAAINAP------IQGTAADVIRRAMIRMPDAIAGLP 879 Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + + +M P+ + L + + + Sbjct: 880 AKMLLQVHDELIFEVEEGAVDDLITAARDVMENASDPAVKLDVKLAVDAGQGANW 934 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 202/709 (28%), Gaps = 166/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 L +D ET + A + + + T + Sbjct: 348 LAVDTETTGLNEMV----------ADLVGISLCIEPGEACYIPLTHRDGASDDLFGSDAL 397 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D +++ + N ++ +F + + T +++ Sbjct: 398 AEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY---GVDVAPIDDTMLMSYAM 454 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L + K + GK+ I ++ Y A+ ++ W Sbjct: 455 HAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFDKVPIDEATAYAAEDADITLRLW 514 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF R T +++ L ER L + + G ++D D++ ++ AQ+ Sbjct: 515 KLFKPQLHRVQVTT--VYETL------ERPLVPVLAQMEMHGIKVDRDVLSRMSNAFAQK 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 L+ +I +L G + L LF G++ T +L Sbjct: 567 MAALEAEIHELA-GETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYSTGADVLEDLATEH 625 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L+ S + L ++ D GR+ + GA+ TGR + QN+P Sbjct: 626 ELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGAN-TGRLASTDPNLQNIP 684 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G LV D + IE R+LA Sbjct: 685 ------------------------VRTEEGRRIREAFVAEPGNVLVSLDYSQIELRILAH 720 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA +AFA+G DI+ T ++ F+ P+D+++ E R K + Sbjct: 721 IADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAIN--------------F 766 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 767 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 796 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + D + R++ Sbjct: 797 ERFPGIRRYMDDTIAFAKEHGY--------------------------VQTLFGRKIHTP 830 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + + R +Q + D++ M ++L Sbjct: 831 ----EINAKGPHAGFARRAAINAP------IQGTAADVIRRAMVRMPEAIDGLPAKMLLQ 880 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAKRY 673 VHDE++ E + + +M P A + L + + + Sbjct: 881 VHDELLFEVAEDAVDQTIEIARDVMENAPDPAVKLDVKLTVDAGKGANW 929 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 112/730 (15%), Positives = 207/730 (28%), Gaps = 194/730 (26%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEP--------VKLWDRTEQ---- 50 + D ET S P+ QA + + A D+ T + Sbjct: 396 VAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGSG 445 Query: 51 -----------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + + L L DE V+ +A N ++ +L K+ + + + Sbjct: 446 GDLFSDGIRLAEGQVPFAEALARLKDLLEDEAVLKIAQNLKYDYLLMKRH---GVVMQSF 502 Query: 94 ICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDC 147 T +++ + L + K G K+ I + Sbjct: 503 DDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVAGSGKSSITFDFVDIDKATA--- 559 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDR 197 Y D + T L+ L P ER L + + +R Sbjct: 560 --------------YAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVPVLAHMEER 605 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D ++ +L +AQ+ +E++ +L G + L LF G+ + Sbjct: 606 GITVDRQILSRLSGELAQKAAAFEEEVYQLA-GERFNIGSPKQLGDILFGRMGLPGGSKT 664 Query: 258 E----GTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + T +L I++ + + L V + T Sbjct: 665 KTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYAL 724 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P +R+ I++ Sbjct: 725 ASTTTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTP 760 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KL+ AD + IE RVLA +A AF NG DI+ T ++ F P++ + E R Sbjct: 761 GHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRA 820 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + G+ Sbjct: 821 KAINF--------------GIIYGIS------------------------------AFGL 836 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A + + + K + + G+ + Sbjct: 837 ANQLSIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIF-------------- 882 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR Y +++ + R +Q + DI+ Sbjct: 883 ------------GRRAHYPEIRSSNPSMKAF---NERAAINAP------IQGSAADIIRR 921 Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPL 663 M K ++L VHDE++ E + ++ + S+M P+ + +PL Sbjct: 922 AMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKTLPIVVSVMENAAMPAISMRVPL 981 Query: 664 KAEGYEAKRY 673 K + A + Sbjct: 982 KVDARAADNW 991 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 191/703 (27%), Gaps = 158/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 + D ET L A + ++A Sbjct: 354 NVFAFDTETDGLDTL----------SANLIGLSFAIAPGEAAYLPVAHDYLDAPAQLDRA 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 ++ L L DE V+ V N F+ + + GI++ + T + + Sbjct: 404 SVLERLKLLLEDEKVLKVGQNLKFDMGVLARY-GINLRGIAY-DTMLESYVLDSVGGRHD 461 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + N L + GK + A Y D Sbjct: 462 MDNLADRYLGHKTITFEEIAGKGKNQL---------------TFNQIALAQAALYAAEDA 506 Query: 168 EATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + P + + L + I G ID ++ + + + Sbjct: 507 DVTLRLHLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDPAILSVHSQELTKR 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 +L+ +L + L+ L+ + ++ + T + +L+ + Sbjct: 567 LGELEIQAHELAGEPF-NLVSLKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDY 625 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 626 PLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIP 684 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G ++V AD + IE R++A Sbjct: 685 ------------------------VRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAH 720 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + +KAFA G+DI+ T A+ F P+DKV+ EQR K + L Y Sbjct: 721 LSQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMS-----AF 775 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + FE + + + Q E L G L Sbjct: 776 GLARQLGVPRGEAQRYMDRYFERYPGVLDYMERTRQQAAEQGYVTTLDGRRLYL------ 829 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + Sbjct: 830 ---PDARSSNGMRRKAAERAAINAPMQGTAADII---------------------KRAMI 865 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 +V L I+Q VHDE Sbjct: 866 EVDAWIQEQGQP-------------LVRMIMQ------------------------VHDE 888 Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E ++ + + LM + + A +PLK + + Sbjct: 889 LVFEVHESVIDASSQRIRELMEGSMALA--VPLKVDVGVGANW 929 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 102/707 (14%), Positives = 186/707 (26%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 D ET S + QA I A A + + Sbjct: 333 FAFDTETTSLDYM----------QAEIVGVALAVATDRAAYIPLAHDYPGAPEQLDRDLV 382 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 + L L D V N ++ + GI + + + + S + Sbjct: 383 LTRLRPLLEDSQRAKVGQNLKYDANVLANY-GIALRGIA-HDSMLESYVLDATGSRHDMD 440 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A + Y D Sbjct: 441 TLALKYLGEKTTHFEEVAGKGAKQ---------------ITFNAVAIEQAAPYAAEDAAV 485 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P + E L + I G R+D L+ + + Sbjct: 486 TLKLHQTLWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLA 545 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 L++ L + L LF + + T + +L+ + Sbjct: 546 ILEQSAHDLAGQAF-NLGSPKQLGEILFQKLELPVLKKTPKGAPSTAEDVLAELALDYPL 604 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + S + L + + GR+ + + TGR S QN+P Sbjct: 605 PAVLMEYRSLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 661 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R A G+ +V AD + IE R++A ++ Sbjct: 662 ----------------------IRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLS 699 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF D++ T A+ F P++ VS +QR K + Sbjct: 700 QDKGLLGAFGANLDVHSATAAEVFGVPLEDVSSDQRREAKAINF--------------GL 745 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + +L + + + Sbjct: 746 IYGMS------------------------------AFGLAKQLRLGRHEAQAYIDRYFER 775 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV E + RRL ++ Sbjct: 776 YPGVADYMTQTRELAHSQGY--------------------------VETLFGRRLYLPEI 809 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLT 627 R+ +Q + DI+ M + +++ Sbjct: 810 N---------ARNKQRQMAAERTAINAPMQGTAADIIKLAMIAVDEWLSKTDIDALMIMQ 860 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E DT ++ + LM S +PL E + Sbjct: 861 VHDELVFEVADTEVATLTSAIPDLMADVAS--LDVPLLVEAGVGTNW 905 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 104/708 (14%), Positives = 193/708 (27%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 ++ D ET S + A I ++A++ Sbjct: 334 RVAFDTETTSLDAMR----------AEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAE 383 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 L +L E + H+ ++R + GI + T + + L Sbjct: 384 TLERLKPWLESERHGKLGHHLKYDRNVLGNH-GITLRGI-VDDTLLESFCLDAGANRHDL 441 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L++ + GK + + +Y D + Sbjct: 442 DSLAERHLDYKTTHYEDVAGKGVKQ---------------IPFAEVDIGIATDYAGEDAD 486 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 +L P + E L + I G ++D D + + + + E Sbjct: 487 ICLQLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEM 546 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 ++++ + + G + ++ LF G+ T + +L Sbjct: 547 ERIEREAFEEAGGEF-NLGSPKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQMADDYA 605 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL S TL + GR+ + GA TGR S QN+P Sbjct: 606 LPRLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGA-ATGRLSSSEPNLQNIP- 663 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 A +R IA G +L+ AD + IE R++A + Sbjct: 664 -----------------------VRTEAGRRIRRAFIAEEGHQLLAADYSQIELRIMAHL 700 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + +KAFA G+DI+ T A+ F ++VS +QR K + Sbjct: 701 SQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINF--------------G 746 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + Sbjct: 747 LIYGMS------------------------------AWGLARNLGIEQGEAREYIDRYFS 776 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL + Sbjct: 777 RYPGVHDYMERARASGRENGY--------------------------VETLFGRRLYLPE 810 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 + Q R +Q + DI+ M + +++ Sbjct: 811 INSRNGARRQ---QSERVAINAP------MQGTAADIIKRAMVRVAHDLEDTGIDARMIM 861 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E D + TL M+ + L + + Sbjct: 862 QVHDELVFEVADAAVEDLTTLVRKAMSGAAD--LDVELVVDVGVGANW 907 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 113/705 (16%), Positives = 197/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + + Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 447 ALRHLGEKTIKYEDVAGKGAQQIG---------------FDEVALDKAAEYAAEDADITL 491 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P + E + + + G ID + + + IA +L Sbjct: 492 RLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEIATRLIQL 551 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + + +L G + + F G+ + T + +L Sbjct: 552 EGEAYELAGGEF-NLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVLQKLAEDYPLPK 610 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L V+ GR+ A TGR + QN+P Sbjct: 611 VLLEHRGLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 665 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G KLV AD + IE R++A I+G+ Sbjct: 666 --------------------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGD 705 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AF+ GEDI+ T ++ FN +VS +QR + KV+ Sbjct: 706 ESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVIN--------------FGLIY 751 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A ++ + A++ Sbjct: 752 GMS------------------------------AFGLASNLGITRDAAKMYIDRYFARYP 781 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + + RRL ++ G Sbjct: 782 GVARYMDETRLSAKAKGYVETVF--------------------------GRRLWLPEING 815 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 A R +Q + D++ M K G +++ VH Sbjct: 816 GNGPRRQAA---ERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVH 866 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE++ E PD V L LM A +PL AE + Sbjct: 867 DELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGTGLNW 909 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 115/695 (16%), Positives = 198/695 (28%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I ++A + + + Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L V + ++ + GI++ T + + P + N Sbjct: 389 AKLKPWLESAKHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNL 446 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170 L + GK + + +L Y + E T Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQTLYPQLAAEKT 506 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E D E + + + G ID + + IA +L+ + L G Sbjct: 507 LE-----HVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAYVLAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L ++L S Sbjct: 562 EF-NLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620 Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ S GR+ A TGR + QN+P Sbjct: 621 LKSTYTDKLPRMVNASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA G KLV AD + IE R++A I+G++ ++AF+ G Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQG 715 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F+ +VS +QR + KV+ G+ + N Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLASN 761 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + A +L + A++ GV + + Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 792 LSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M K G +++ VHDE++ E PD Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDE 876 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM A +PL AE + Sbjct: 877 ELPEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 202/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 ILAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L+ +L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ D + + LF GI + T +S+L Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + ++M +PL E + + + Sbjct: 877 DELVFEADQNIADELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 205/702 (29%), Gaps = 160/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S L A + + A + Sbjct: 353 FAFDTETDSLDVL----------SANLVGISCADAPGQACYIPLAHDYLDAPRQLDRQYV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V + N ++ + + GI + + T + + + Sbjct: 403 LARLQPLLEDEGVAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + + EY D + Sbjct: 461 SLAARHLDHKTITFEEIAGKGKGQL---------------TFNQIPLEQAAEYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L +RL P +GE L + + G ID ++ + + +A + Sbjct: 506 TLQLHQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLE 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 L++ + T L+ LF + ++ + T + +L+ A Sbjct: 566 ALEQQAHSEAGEPF-NLSSTKQLQAILFEKQQLPVLKKTPGGAPSTNEEVLAELADQGYA 624 Query: 275 -KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L + V+ GR+ + + TGR S QN+P Sbjct: 625 LPQVILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 682 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + IE R++A + Sbjct: 683 -----------------------VRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHL 719 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AFA G+DI+ T A+ F P++ VS +QR K + L Y Sbjct: 720 SGDKGLLAAFAAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMS-----AFG 774 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L++ + FE + ++ + + + L G L Sbjct: 775 LARQLNIGRGEAQRYMDLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYL------- 827 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + A++ + M + P R Sbjct: 828 --PEINARNGMRRKAAERAAINAPMQGTA--ADIIKRAMIAVDGWLQEAQPEVR------ 877 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 M + VHDE+ Sbjct: 878 -----------------------------------------MI----------MQVHDEL 886 Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E P++ + V + +LM + S A +PLK + + + Sbjct: 887 VFEVPESQVEAVVCQVRALMENSLSLA--VPLKVDIGCGENW 926 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + QA + ++A Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + L L D + N ++ + K G+ I +K + T + + Sbjct: 374 EVLRKLKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + GK + + + Y D Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ ++ Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELSGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L++ KL + L+ L+ + + + T +++L + Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + + L V R T + TGR S QN+P Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + +E R++A I Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + + RR+ D Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + A + +Q + DI+ M + +++ Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + M + A +PL + + Sbjct: 853 QVHDELVFEVAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 111/719 (15%), Positives = 205/719 (28%), Gaps = 184/719 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL----- 57 + +D ET + A + + + T + A DL Sbjct: 359 YVAVDTETTGLNDMI----------ADLVGISMCSEAGKACYIPLTHKDASTDDLFGSDE 408 Query: 58 ---------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L D +VM + N ++ +F + GI+I T +++ Sbjct: 409 LADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY-GIEIAP--IDDTMLISYA 465 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L + K + GK+ I Sbjct: 466 QHAGLHNHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPID---------------- 509 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLV 206 Y D + T L++ L P ER L + + G ++D D++ Sbjct: 510 -HATPYAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVL 568 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLK 262 ++ AQ+ L+ +I ++ G + + LF G++ T Sbjct: 569 SRMSNAFAQKMAGLEAEIHEMA-GHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGA 627 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321 IL IL+ S + L + ++ D GR+ + GAS TGR + Sbjct: 628 DILEDLATEHEMPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLA 686 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA GK LV D Sbjct: 687 STDPNLQNIP------------------------IRSEEGRRIREAFIAEEGKVLVALDY 722 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +AG D +AF +G DI+ T ++ F+ P+D+++ + R K + Sbjct: 723 SQIELRILAHVAGIDSLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINF---- 778 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A ++ + Sbjct: 779 ----------GVIYGISGF------------------------------GLARNLRIPRS 798 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + G+ + D T + + Sbjct: 799 EAQGFIDRYFDRFPGIKEYMNDTTAFAK--------------------------ANDRVE 832 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617 R + ++ + R +Q + DI+ M Sbjct: 833 TLFGRVIHTPNI----NAKGPQAGFAKRAAINAP------IQGTAADIIRRAMIRMPDAI 882 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + T +M P +PL + + + Sbjct: 883 KDQPAKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVVKLDVPLIVDAGQGANW 941 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 200/699 (28%), Gaps = 158/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55 +D ET S + A I + A +++ + + + Sbjct: 286 FCLDTETTSLDIMA----------AEIVGISLAIEEKKAAYIPFIHTDGSVQLLRDEVFA 335 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 + L + + + N ++ + K GI + + T + + + Sbjct: 336 AIKPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAY-DTMLESYILNSNAGRHDMDTL 393 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK Y D + T Sbjct: 394 SLKYLGHKTITFEDIAGKGAKQL---------------RFDQIPVDKASVYAAEDADITL 438 Query: 172 ELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +L +L P+ +D E L + + RG ID + + + + + + K L+E Sbjct: 439 QLHHKLYPMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEE 498 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLI 278 + ++L + L+ LF I T +S+L +I Sbjct: 499 EAIQLAGKPF-NLSSPKQLQEILFNEQKIPVIAKTPTGQPSTAESVLQELAFDYRLAAVI 557 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + ++ L + ++ GR+ + A TGR S QN+P Sbjct: 558 LEHRGLTKLVSTYIDALPKKINAETGRVHTSYNQAVA-ATGRLSSSEPNLQNIP------ 610 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ IA + ++ AD + IE R++A ++ ++ Sbjct: 611 ------------------IRNEEGRLIRTAFIAPPEQVILAADYSQIELRIMAHLSQDEN 652 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AFANG DI+ T A+ F+ ++V+ EQR K + L Y + Sbjct: 653 LLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMS-----AFGLAKQI 707 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +++ + F+ + + + + Q E + L G L + Sbjct: 708 GVERQDAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYL---------PEI 758 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + I P Sbjct: 759 NTRNLMRQKAAERTA---------------------------INAPM------------- 778 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAI--SRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 TA + + K QA +R M + VHDE+V E Sbjct: 779 --QGTAADIIKKAMINIAKWQNA--QATPPAR------MI----------MQVHDELVFE 818 Query: 636 TPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + LM + +PL + Sbjct: 819 VASQEIEASTVKIRQLMEQAMQ--LSVPLLVSIGTGPNW 855 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 189/702 (26%), Gaps = 161/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD-- 56 +D ET S + A + +++ +P D Sbjct: 344 FSVDTETTSLNYM----------DAELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYV 393 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L ET + N ++ + + GI + R+ T + + + Sbjct: 394 LNALKPILEAETPAKIGQNLKYDMNVLARY-GITLSGVRF-DTMLESYVLDAAATRHDMD 451 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK Y D + Sbjct: 452 SLALKYLGQKTIAFEDVAGKGAKQ---------------ITFDQVPLLQAATYAAEDADV 496 Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P + E L + + G RID+ + + + + Sbjct: 497 TLKLHQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMA 556 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ + L + L L+ + + + T +S+L Sbjct: 557 ELEAEAHTLAGQPF-NLASPKQLGEILYDQLQLPILKKTPKGAPSTDESVLQDLAHDYEL 615 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L E V+ GR+ + AS TGR S QN+P Sbjct: 616 PKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVAS-TGRLSSSDPNLQNIP-- 672 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + +R IA G +V AD + IE R++A ++ Sbjct: 673 ----------------------IRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLS 710 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ I AFA G DI+ T A+ P++ V+ + R K + L Y Sbjct: 711 DDESLIDAFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMS-----AFGL 765 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + F + + ++ Q + + L G L Sbjct: 766 ARQLGISREQAQAYMDRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYL-------- 817 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 V K + + SA + + + Sbjct: 818 -PEVRAASKMRRQAAERVAINAPMQGSAADIIKRAMIDIDT------------------- 857 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 +R + I+Q + Sbjct: 858 --------------WLRTQ---PAKIRMIMQ-------------VHDE-----------L 876 Query: 633 VSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E P+ ++ + M+ S +PL E + Sbjct: 877 VFEVPNDVVPDAIEQIQKRMSGAAS--LKVPLIVEAGTGTNW 916 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 99/710 (13%), Positives = 191/710 (26%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + + + + Sbjct: 346 YVAVDTETTGLNDMI----------VDLVGICLSVEIGEACYIPVGHTNGENDLFGGASL 395 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L+D +++ + N ++ +F + D+ T +L+ Sbjct: 396 CNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTKIFARY---DVNLAPVDDTMLLSYAI 452 Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + LN K G K+ I D+ Y A+ ++ W Sbjct: 453 NGGKHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFDKVSINDAVNYAAEDADITLRLW 512 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF ++++ L ER L + + G ++D + + ++ AQ Sbjct: 513 KLFKPMLHESSVT--KIYETL------ERPLIPVLAKMEMNGIKVDRNTLSRMSNNFAQS 564 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSN-IT 271 L+ +I L + L LF + + T +L Sbjct: 565 MSGLEAEIYNLAGQTF-NVGSPKQLGEILFDKLELPGGKKGKTGAYGTGVDVLEDLASEG 623 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L ++ + GR+ + GAS TGR S QN+ Sbjct: 624 HELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGAS-TGRLSSTDPNLQNI 682 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P A +R IA G L+ D + IE R+LA Sbjct: 683 P------------------------IRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILA 718 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA D +AF G+DI+ T ++ FN P++ + R K + Sbjct: 719 HIAKIDTLKQAFHEGQDIHALTASQMFNVPLENMDPMVRRQAKAIN-------------- 764 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 765 FGVIYGISGF------------------------------GLARNLRIPRKEAQSFIDTY 794 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + + R++ Sbjct: 795 FERFPGIRTYMDETVSFAKENGY--------------------------VETLFGRKIHT 828 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + + R +Q + D++ M + ++L Sbjct: 829 ----SEINAKGPQAGFAKRAAINAP------IQGTAADVIRRAMVQMPNAISHLPAKMLL 878 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + +M K P +PL + + Sbjct: 879 QVHDELIFEVNKDALNETTEVVRNIMEKASEPVVKLDVPLVVDAGFGNNW 928 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 101/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 306 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYIPLAHNYENAPQQLNREQ 355 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 356 VLAQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 413 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 414 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 458 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 459 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 518 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 519 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 575 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 576 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 633 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 634 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 671 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 672 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 717 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 718 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 747 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 748 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 781 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 782 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 832 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 833 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 875 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 191/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET + L A I ++A A+ Sbjct: 351 FAFDLETDALDTL----------SANIVGISFAVAPGEAAYLPVAHDYLDAPDQLDRAAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N ++R + K I++ ++ + + + Sbjct: 401 LAQLKPLLEDENAWKVGQNLKYDRGVLKNY-DIELAGIKF-DAMLESYILNSVVGKHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + Y D + Sbjct: 459 SLAARWLNHKTVTFQEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 503 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + + Sbjct: 504 TLQLHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQSILAQHSKELTARLA 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + T L++ LF GI + T + +L+ + Sbjct: 564 ELELKAHELAGEPF-NLSSTKQLQVILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEHRGLSKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSADPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A+ G ++V AD + IE R++A ++ Sbjct: 680 ----------------------VRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA GEDI+ T ++ F +DKVS EQR K + L Y Sbjct: 718 QDKGLLDAFAQGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMS-----AFGL 772 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ FE + + + + L G L Sbjct: 773 SRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASNGYVETLEGRRLWL-------- 824 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + R ++ D Sbjct: 825 -PDIKSSNAIRRKAAERAAINAPMQGTAADII-------------------KRAMIAVDE 864 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + N M + VHDE+V Sbjct: 865 WLEQQNDNAVR-----------------------------MI----------MQVHDELV 885 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + +LM + +PL E + Sbjct: 886 FEVKAEAVEEASQKIRALMEGSVQ--LDVPLLVEVGVGNNW 924 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 193/701 (27%), Gaps = 165/701 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 + +D ET S + A + ++A +++ EQ + Sbjct: 357 ISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKFKA 406 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 + + V N ++ + + GI + T + L ++ L Sbjct: 407 IYENPNTLKVGQNIKYDLEVLRNY-GIMLQG-PLFDTMIAHYLLQPELRHNMDFMAEVYL 464 Query: 117 NFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 N+ G K + + S Y Y D + T +L Sbjct: 465 NYETVHIDALIGAKGKTQKNMRELAPSEVYA---------------YACEDADITLQLKN 509 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P + E L + + G RID + + ++ + +L+++I Sbjct: 510 VLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIY 569 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + + LF I D ++ T + +L IL+ Sbjct: 570 QAA-GKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILD 628 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 A ++ L + ++ G + + + TGR S QN+P Sbjct: 629 YRALKKLLGTYVDALPKLINPRTGHIHTSFNQAV-TATGRLSSSDPNLQNIP-------- 679 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G +R C I G + AD + IE RV+A ++ + + Sbjct: 680 ----------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANML 723 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF G DI+ T AK ++ P+ +V++++R K + G+ + Sbjct: 724 DAFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGII--------------YGITV 769 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + + V Sbjct: 770 FGLADRLNIERA------------------------------EAKQLIDGYFKMFPQVRD 799 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + E RR D+ + Sbjct: 800 YMEQAKETAKANGYVETFFH--------------------------RRRYLPDINSSNA- 832 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633 T R +Q + DI+ M ++L VHDE+ Sbjct: 833 --TVRGIAERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELN 884 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 T V + M +PL A+G + Sbjct: 885 FSVLPTEKELVERIVMEEMQAAYP--LDVPLVADGGWGNNW 923 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 194/708 (27%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 100 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 149 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ ++ T + + + Sbjct: 150 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 207 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 208 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 252 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + IA + Sbjct: 253 TLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLE 312 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 313 ELEQKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 371 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 372 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 428 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 429 ----------------------IRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLS 466 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ ID+VS EQR K + Sbjct: 467 GDQALLDAFRDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNF--------------GL 512 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 513 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 542 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 543 YPGVMQYMEDTRSAAADKGYVETIF--------------------------GRRLHLPEI 576 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 577 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 627 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 628 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 673 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 109/709 (15%), Positives = 212/709 (29%), Gaps = 158/709 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + +D ET S + + + A Sbjct: 386 HVAVDTETTSLDAMAC----------DLVGVSLATGPGRACYIPLAHLKDGSSDDGDMFS 435 Query: 52 -----------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 + L L +V+ +A N ++ ++ + I + T +L+ Sbjct: 436 EGLDPDQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY---GIEVGPFDDTMLLS 492 Query: 101 RTNGLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HV 153 + L+ + K G K+++ + Y A+ + Sbjct: 493 YVLDAGRGKHGMDALSLAHLDHTPIPFKEVAGSGKSMVTFDKVSIEKASAYAAEDADVTL 552 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + W L + T +++RL ER L + + RG ID ++ +L + Sbjct: 553 RLWTLLKARLVAEKMVT--VYERL------ERPLVPVLCRMEARGVEIDRQILSRLSGEL 604 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSN 269 AQ+ ++ DI ++ I + L LF + ++ T L Sbjct: 605 AQKAAGIEADIHEMAGEPI-NIASPKQLGELLFGKMELPGGKKTKTGQWATGAQALEDLA 663 Query: 270 IT-QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 I++ + + L ++ GR+ + ++ TGR+S Sbjct: 664 AEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAMA-STTTGRFSSSEPNL 722 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P A +R+ IA++G KLV AD + IE R Sbjct: 723 QNIP------------------------VRTEAGRKIRTAFIAADGHKLVSADYSQIELR 758 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA +A +AFA+G DI+ T ++ FN P++ + R K + + Y Sbjct: 759 VLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYG----- 813 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 L + + + FE + + + E + + G Sbjct: 814 ISAFGLANNLGIDRGEASDYIKMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAH--- 870 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + + + R Sbjct: 871 ------YPEIKSSNPQMRAFNERAAINAPIQGSAADII---------------------R 903 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + ++G A++ + L M +L Sbjct: 904 RAMARMEG----------------------------ALAAEKLSAQM----------LLQ 925 Query: 628 VHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKRY 673 VHDE++ E PD ++ T+ +M P A L PL+ + A+ + Sbjct: 926 VHDELIFEVPDDEVDATIETVVKVMEDAPMPALSLSVPLQVDARAAENW 974 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 102/707 (14%), Positives = 200/707 (28%), Gaps = 171/707 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + ID ET S + A + + A+D + T Sbjct: 346 KRFAIDTETTSLD-------YRVA---EMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNRE 395 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + + L L DETV + H+ ++ +F +++ + T + + Sbjct: 396 QILAQLKPILEDETVHKIGHHLKYDAHIFANHS-VELKGW-YFDTMLASYVINSVATRHG 453 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L+ + GK + + ++ Y D Sbjct: 454 MDDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDA 498 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 T L++ L E + + + + G ++D + +L + Sbjct: 499 HVTYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTET 558 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L+ ++L G + + LF G+ + T +SIL Sbjct: 559 ILGLENQAIELA-GESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESILEKVEHP- 616 Query: 273 LAKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++IL S + L E + R+ + + TGR S QN+P Sbjct: 617 -IAEVILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQA-LTATGRLSSSDPNLQNIP 674 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 G +R IA G+ L+ AD + IE R++A Sbjct: 675 ------------------------IRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAH 710 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + ++ + AF +G+D++ T A+ N P+++V+ +QR K + Sbjct: 711 FSQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNF-------------- 756 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ + + K + Sbjct: 757 GLLYGMSEF------------------------------GLIRQLGFTREESQNYIKQYF 786 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 ++ G+ + + + + RRL Sbjct: 787 HRYPGIYEYMQRTRQVALEQG--------------------------FVETILGRRLYTP 820 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627 D+ + R Q + DI+ M K ++L Sbjct: 821 DIDARNMMVR---KGAERAAINAPL------QGSAADIIKLAMIEVDKMLPKDQAKLLLQ 871 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + L M + +PL E + + Sbjct: 872 VHDELVFEVDADLADELAPKLAETMQSVVN--ISVPLLVEVGQGLNW 916 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 197/700 (28%), Gaps = 137/700 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDL 57 ID ET S + A + + A Q + + L Sbjct: 284 AIDTETDSLDYMR----------ANLVGISVAPAPGEAYYLPLAHQLSANLPYAETLTRL 333 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL 114 L + ++R +F + GI++ + T +++ T +L + Sbjct: 334 KPLLEASAPPKSGQHHKYDRHIFARA-GIELRGIK-DDTMLMSYTIDSTATRHNLDDLAD 391 Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LN + GK + Y D + T L Sbjct: 392 YYLNHQTTTFEDIAGKGAKQL---------------TFDQIPLETATAYACEDADITLRL 436 Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L L I G RID + I+ + L+ Sbjct: 437 KNHLAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEH 496 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSN--ITQLAKD 276 L + L+ L+ G+ T + +L+ Sbjct: 497 AAHTLAGSPF-NLGSPKQLQEILYDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPR 555 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 LIL + + L E ++ GR+ + + TGR S QN+P Sbjct: 556 LILEHRGLAKLKTTYTDRLPELINPHTGRIHTSYHQAV-TSTGRLSSSDPNLQNIP---- 610 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A +R IA +G +++ AD + IE R++A ++ + Sbjct: 611 --------------------VRSEAGRRIRRAFIAEDGWQILAADYSQIELRIMAHLSAD 650 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AFA G+DI+ T A+ F + VS+EQR K + L Y Sbjct: 651 PGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMS-----AFGLAR 705 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L++ + + F + + + ++ + + L+G L Sbjct: 706 QLNIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYL---------P 756 Query: 516 GVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + + SA + L + R + + Sbjct: 757 DINSKNPQRRQASERLAINAPMQGSAADIIKRAMLAIDRELELSPLPGAGGTHNTNPLPR 816 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + N RD +++ VHDE+V Sbjct: 817 EATAAKN-------------------------RD------------DLRLIMQVHDELVF 839 Query: 635 ET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P + +LM + +PL E + Sbjct: 840 EIRPQAAAELTPRIVALMENAMT--LSVPLIVETGLGANW 877 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 201/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDRDQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + L +E V + H+ ++ +F GI++ + + + + + Sbjct: 400 ILVQIKPVLENEAVKKIGHHLKYDAHIFANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELF----KRLIPLSDGE-------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L+ +L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ D + + LF GI + T +S+L Sbjct: 563 EGLENQAMEIADETF-NIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTRQESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + ++M +PL E + + + Sbjct: 877 DELVFEADQNIAEELSKQIATVMESVVK--ISVPLVVEVGQGQNW 919 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 100/708 (14%), Positives = 184/708 (25%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + D ET S PL QA + + A + Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTH 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V V + ++ + ++ G+++ T + + + Sbjct: 406 ALAQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P D E L + I G +D + + +++ Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AFA+G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 884 QVHDELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 201/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + + A I ++A + Sbjct: 292 FAFDTETTSLRYM----------DAEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQV 341 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L + + V N +++ + GI + T + + + Sbjct: 342 LDQLKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIA-EDTMLESYVLNSVATRHDMD 399 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + Y D + Sbjct: 400 SLAMYYLGEKTTSFESIAGKGAKQL---------------TFNQIDLEKAAPYAAEDADI 444 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + L + + RG I + + + +A+ Sbjct: 445 TLRLHQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMA 504 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAK 275 +L+++ ++ G + T L+ + G+ ++ + + S + T Sbjct: 505 ELEKEAHEVA-GETFNLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSPTNTNC 563 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +IL + S +TL E + GR+ + + TGR S QN+P Sbjct: 564 RVILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAV-TATGRLSSSEPNLQNIP--- 619 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G KLV AD + IE R++A ++G Sbjct: 620 ---------------------IRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSG 658 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAF GEDI+ T ++ F +D VS +QR K + Sbjct: 659 DKGLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINF--------------GLI 704 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ S+ + + + ++ Sbjct: 705 YGMSAFGLSRQLDVE------------------------------RKLAQEYIDRYFERY 734 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL+ ++ + D + RRL ++ Sbjct: 735 PGVLKYMDNIRKQA--------------------------HDDGFVETLFGRRLYLPEIN 768 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLT 627 L A R +Q + DI+ M + + + + Sbjct: 769 ARNKQLQQAA---ERTAINAP------MQGTAADIIKRAMVDVENWLLKEHADEARMTMQ 819 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E ++ + + L M+ +PL E + Sbjct: 820 VHDELILEVKESALDKIRSGLEKRMSAAAE--LDVPLLVEAGVGDNW 864 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 87/703 (12%), Positives = 184/703 (26%), Gaps = 166/703 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 D ET PL A + ++A + S + Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K + + T + + Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + EY D + T +L Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADVTLKLK 501 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P E L + + G +D + + + KL++++ Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + T + LF + T + +L +L Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L E ++ G++ + + TGR S QN+P Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I N AD + IE R++A ++G+ Sbjct: 673 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G DI+ T AK + P+++V+ + R K G+ Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGI 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + + + + Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + ++ + R+ D+ Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLPDINSHN 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL A+ E + + Sbjct: 877 LNFNVYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 100/693 (14%), Positives = 189/693 (27%), Gaps = 141/693 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S + A I +++ + Sbjct: 352 VALDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L D + + ++R +F ID+ T + + + P L + Sbjct: 402 LARLKPWLEDARYPKLGQHVKYDRHVFANH-DIDVRGY-VHDTMLQSYVLEVHKPHGLAS 459 Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + GK I + Y C ++ L + + Sbjct: 460 LAERHTGRTGISYEDLCGKGAHQIPFAQVPVDKAAAYSCEDSDQTLDVHLALWPLLQADD 519 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +L + + E I G ID + + + Q +L+ + ++ Sbjct: 520 -------KLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLETEAYEIA 572 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLAS 284 + L F G+ +V + T + +L +L + Sbjct: 573 GQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAKLLEHRSL 631 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L++ GR+ A TGR S QN+P Sbjct: 632 TKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP------------ 678 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR +A G + AD + IE R++A I+G+ + AF Sbjct: 679 ------------IRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGDHALLHAFH 726 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D++ T A+ F +D+V+ EQR KV+ L Y + L ++ + Sbjct: 727 AGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMS-----SFGLAKNLGIETKA 781 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F+ + + + + Q + + G L + Sbjct: 782 AAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYL---------PEINSPNGP 832 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 G +L V+ + Sbjct: 833 RRAGAERAAINAPMQGTAADLI---------------------KLAMVAVQKELDAHKPG 871 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 M + VHDE+V E P+ Sbjct: 872 IK----------------------------MI----------MQVHDELVFELPEGEVDW 893 Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + LM + A +PL AE + K Sbjct: 894 LRGHIPRLMAEVA--ALKVPLLAEVGVGANWDK 924 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 194/702 (27%), Gaps = 161/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A I ++A + + Sbjct: 332 FAFDTETTSLNYM----------DAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQLSREHV 381 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 + L L ++ + V N ++ + I + + T + + + S + Sbjct: 382 LARLKPLLENDGLKKVGQNLKYDANVLANY-DIALKGIAY-DTMLESYVHNSTGSRHDMD 439 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + G Y D + Sbjct: 440 TLAELHLGHKTIHFEDIAGKGAKQL---------------TFNQIKLEEAGPYAAEDADI 484 Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P +D E L + I G +D L+ +L Sbjct: 485 TLRLHQALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTKLLGELSLQHGASIV 544 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274 KL+++ +L + L LF + +V + T + ++ + Sbjct: 545 KLEKEAYELAGEEF-NLGSPKQLATILFEKMNLPVVKKTAKGAPSTNEEVMQELALDYPL 603 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + S + L V+ GR+ + A TGR S QN+P Sbjct: 604 PSVILQHRSLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVA-ATGRLSSSDPNLQNIP-- 660 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G K+V AD + IE R++A ++ Sbjct: 661 ----------------------IKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLS 698 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + KAFA G D++ +T A+ F T ++ VS EQR K + L Y Sbjct: 699 NDPGLQKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMS-----AFGL 753 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + + FE + + ++ E + L+G L Sbjct: 754 ARQLRIGRNDAQTYIDTYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYL-------- 805 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + + +A + + + + I Sbjct: 806 -PEINSSNGMRRQAAERVAINAPMQGTAADIIKRAMIDVDAWLQTEQID----------- 853 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 +R I+ VHDE+ Sbjct: 854 ---------------------------------ARIIM----------------QVHDEL 864 Query: 633 VSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E LC +M+ +PL E + Sbjct: 865 VLEVAAADAEAISAKLCDIMSSAV--VLSVPLLVEAGIGDNW 904 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 103/704 (14%), Positives = 194/704 (27%), Gaps = 168/704 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET + A + +++ + + Sbjct: 356 VSLDTETTGLDGMT----------AQLVGISFSIEAHQAAYLPLAHHYPGAPDQLGREHA 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 L +L + N +++ +F GI T + + P + N Sbjct: 406 LQKLKHWLESPAHKKLGQNLKYDQHIFANH-GIAFAGIA-EDTLLQSYVLESHKPHEMGN 463 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S GK + Y D + T Sbjct: 464 LALRHLGLSTVSYADVVGKGAKQIG---------------FDQVDLETATRYAAEDADIT 508 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L + L P G E + + + G ID ++ + + + +++ Sbjct: 509 LQLHQTLSPQLQGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIE 568 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 + + + L LF + + T + +L + L Sbjct: 569 KQAFEAAGQPF-NLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVLQELALDYPLPKL 627 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + + L + V+ GR+ + A TGR + QN+P Sbjct: 628 LLEYRGMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVA-VTGRLASSDPNLQNIP----- 681 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R I G ++V AD + IE R++A ++G++ Sbjct: 682 -------------------IRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDE 722 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +KAFA GEDI+ T A+ F+ +D VS EQ Sbjct: 723 GLLKAFAAGEDIHRATAAEVFSVALDAVSSEQ---------------------------- 754 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + L A + + +A + + A++ G Sbjct: 755 ----------------RRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYIDLYFARYPG 798 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + E + RRL ++ G Sbjct: 799 VKRYMDSTREQAKAQG--------------------------FVETWFGRRLWLPEINGA 832 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHD 630 A R +Q + D++ M K +++ VHD Sbjct: 833 NGMRRQAA---ERAAINAP------MQGTAADLIKLAMIAVQDWLETEKLATKLIMQVHD 883 Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P V + LM +PL+ E + Sbjct: 884 ELVLEVPQGELARVKDKVRELMCNVAE--LKVPLEVGMGEGGNW 925 >gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 183/705 (25%), Gaps = 161/705 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + A I +++ + Sbjct: 346 VALDTETTSLDEMV----------AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEV 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L + + + ++R +F GI++ T + + + P L + Sbjct: 396 LAKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHGLAS 453 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + EY D + T Sbjct: 454 LAERHLGRKGINYEDLCGKGAKQ---------------IPFSQVSIDKAAEYSCEDSDQT 498 Query: 171 RELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 ++ + L P + E I G ID + + + Q Sbjct: 499 LDVHRTLWPRLEKDAQEGGKLRFIYELEIASSETLYRIERNGVLIDAPTLAQQSHELGQR 558 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 +L+++ +L + + F G+ +V + T + +L Sbjct: 559 ILQLEQEAYELAGQPF-NLGSPKQIGEIFFGKLGLPIVKKTATGAPSTDEEVLEKLADDY 617 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 IL S + L++ GR+ A TGR S QN+P Sbjct: 618 PLPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP 676 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 VR IA G + AD + IE R++A Sbjct: 677 ------------------------IRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAH 712 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G+ + AF +G D++ T ++ F P V+ EQR K + L Y + Sbjct: 713 LSGDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMS-----SY 767 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + F+ + + + + + + G L Sbjct: 768 GLAKSLGIDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYL------ 821 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G L+ ++ R+ Sbjct: 822 ---PEINSPNGPRRGGAERAAINAPMQGT-----AADLIKLSMNAVQRVLDAEGRK---- 869 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 M VHDE Sbjct: 870 --------------------------------------TKMIM------------QVHDE 879 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V E P+ + + LM +PL AE + K Sbjct: 880 LVFEVPENEVDWLKREVPKLMAGVAQ--LRVPLLAEVGVGVNWDK 922 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 110/693 (15%), Positives = 205/693 (29%), Gaps = 144/693 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDL 57 + D ET S PL +A + A++W+ + + L Sbjct: 368 KSVCFDTETTSLNPL----------EAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLIELL 417 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + + + N ++ + K GI + T + ++ Sbjct: 418 RPFFESPEIEKIGQNLKYDIKVLDKY-GIKVEG-PTFDTMIAHYLINPDMRHNMDILAET 475 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN++ GK + K D P + T A F + E Sbjct: 476 YLNYTPQPISELIGKK--GKNQKSMRDVPLAEQTEYAAEDADITFQLKEFFEKELDEAKT 533 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++L + E L + + G +DLD + KL E + ++ K+L+ I + + Sbjct: 534 RKLFN--EIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELEAKIYEAAGEEFK- 590 Query: 235 SRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L + LF + ++ T + +LS+ +L+ Sbjct: 591 ISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQHVLDYRGLVKLQN 650 Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V GR+ A TGR S QN+P Sbjct: 651 TYVDALPGQVEKSSGRVHTDYVQTIA-ATGRLSSNNPNLQNIP----------------- 692 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 VR I + L+ AD + IE R++A ++ E+ IKAF +GED Sbjct: 693 -------IRTERGRQVRKAFIPRSDDYVLLAADYSQIELRIIAALSEEETMIKAFKDGED 745 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ +T ++ FN P+++V++EQR+ K + + Y Sbjct: 746 IHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTS--------- 791 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 L + + + + + + D Sbjct: 792 ------------------------------LSRSESKELIDTYYKTYPKLSNYIADQVAY 821 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR D+ + + A + Sbjct: 822 AREHGYVSTIL--------------------------GRRRYLKDINSQNAVVRGAAERN 855 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641 +Q + DI+ M N K ++L VHDE+V + Sbjct: 856 ---------AVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPEL 906 Query: 642 FSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S M + +PL + + + Sbjct: 907 DQVKKLIKSEMENA--YQLNVPLDVDLGVGQDW 937 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 113/695 (16%), Positives = 200/695 (28%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 339 SFDTETTSLDPMV----------AQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + L +L V + ++ + GI++ T + + P + N Sbjct: 389 AKLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLQSYVLESHRPHDMDNL 446 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170 L + GK + + +L Y + E T Sbjct: 447 ALRHLGIKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQTLYPQLAAEET 506 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E D E + + + G ID + + + IA +L+ + L G Sbjct: 507 LE-----HVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEIATRLIQLESEAYVLAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L ++L S Sbjct: 562 EF-NLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620 Query: 287 SAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+++ GR+ A TGR + QN+P Sbjct: 621 LKSTYTDKLPRMVNANTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA G KLV AD + IE R++A I+G++ ++AF+ G Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEG 715 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F+ +VS +QR + KV+ G+ + N Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLASN 761 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + A +L + A++ GV + + Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 792 LSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M K G +++ VHDE++ E PD Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDE 876 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM A +PL AE + Sbjct: 877 ELSDVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 113/730 (15%), Positives = 207/730 (28%), Gaps = 194/730 (26%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEP--------VKLWDRTEQ---- 50 + D ET S P+ QA + + A D+ T + Sbjct: 399 VAFDTETTSLDPM----------QAELVGFSLAIADNGKDASGTDIRAAYVPLTHKTGSG 448 Query: 51 -----------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + L L DE V+ VA N ++ +L K+ + + + Sbjct: 449 GDLFSDGIKLAEGQAPFAEALERLKDLLEDEAVLKVAQNLKYDYLLMKRH---GVVMRSF 505 Query: 94 ICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDC 147 T +++ + L + K G K+ I + Sbjct: 506 DDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYKDVTGSGKSSITFDFVNIDKATA--- 562 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDR 197 Y D + T L+ L P ER L + + +R Sbjct: 563 --------------YAAEDADVTLRLWMALKPRLVSERLTKVYERLERPLVPVLAHMEER 608 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D ++ +L +AQ+ +E+I +L G + L LF G+ + Sbjct: 609 GITVDRQILSRLSGELAQKAASFEEEIYELA-GERFNIGSPKQLGDILFGRMGLPGGSKT 667 Query: 258 E----GTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + T +L I++ + + L + + + T Sbjct: 668 KTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPETKRVHTSYAL 727 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P +R+ I++ Sbjct: 728 ASTTTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTP 763 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KL+ AD + IE RVLA +A AF NG DI+ T ++ F P++ + E R Sbjct: 764 GHKLLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRA 823 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + G+ Sbjct: 824 KAINF--------------GIIYGIS------------------------------AFGL 839 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A + + + K + + G+ + Sbjct: 840 ANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIF-------------- 885 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR Y +++ + R +Q + DI+ Sbjct: 886 ------------GRRAHYPEIRSSNPSVKAF---NERAAINAP------IQGSAADIIRR 924 Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPL 663 M K ++L VHDE++ E + ++ + S+M P+ + +PL Sbjct: 925 AMIRIEPALEAEKLSARMLLQVHDELIFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPL 984 Query: 664 KAEGYEAKRY 673 K + A + Sbjct: 985 KVDARAADNW 994 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 184/708 (25%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + D ET S PL QA + + A + Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTH 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V V + ++ + ++ G+++ T + + + Sbjct: 406 ALAQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P D E L + I G +D + + +++ Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL S + L E + GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AFA+G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 884 QVHDELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 196/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + A + ++ ++ + Sbjct: 353 IAFDTETTSLNYM----------DAELVGVSFCIEEGEAAYVPVAHDYPDAPAQLSREFV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L +TV+ V + +++ + I + + T + + + Sbjct: 403 LDALKPILESDTVIKVGQHIKYDKNVLANY-DITLNGIGF-DTMLESYVLNSTAQRHDMD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + + G Y D + Sbjct: 461 SLALAYLGHKTIHFEEIAGKGAKQL---------------TFNQISLEEAGPYAAEDADI 505 Query: 170 TREL----FKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + +L + + E L + + G ID + + + +A Sbjct: 506 TLRLHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLRQQSQDLATRIA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ ++ + + T L+ LF + + + T + +L + Sbjct: 566 ELESEVHEEAGEPF-NLGSTKQLQHVLFEKMSLPIIKKTPKGAPSTSEDVLQELALEYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 I+ + + L + ++ GR+ + + TGR S QN+P Sbjct: 625 PKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR + G K V AD + IE R++A ++ Sbjct: 682 ----------------------IRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AFA+G+DI+ T A+ F P+D+V+ EQR K + L Y Sbjct: 720 GDKGLLDAFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMS-----AFGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + ++ E + + G L Sbjct: 775 SKQLNIPRNEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G ++ V Sbjct: 827 -PDIKASNGARRKGAERAAINAPMQGTAADII---------------------KMAMIKV 864 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +R+ D+ M E+V Sbjct: 865 DD-----------WIRKNASD-------------DVTM--MMQVHD-----------ELV 887 Query: 634 SETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + + V T+ +LM + +PL E + + Sbjct: 888 FEIREDKVETYVSTITALMESAAT--LNVPLVVEAGVGENW 926 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 87/703 (12%), Positives = 184/703 (26%), Gaps = 166/703 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 D ET PL A + ++A + S + Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K + + T + + Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + EY D + T +L Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADITLKLK 501 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P E L + + G +D + + + KL++++ Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQEV 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + T + LF + T + +L +L Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L E ++ G++ + + TGR S QN+P Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I N AD + IE R++A ++G+ Sbjct: 673 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G DI+ T AK + P+++V+ + R K G+ Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGI 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + + + + Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + ++ + R+ D+ Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLPDINSHN 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL A+ E + + Sbjct: 877 LNFNVYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 200/705 (28%), Gaps = 169/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ID ET S + A + + A+D + + Sbjct: 350 HFAIDTETTSLD-------YRIA---EMVGFSIAFDAKDAYYVPLAHNYENAPQQLDREQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ + GI++ + + + + + Sbjct: 400 VLAQIKPVLENEAVKKIGHHLKYDAHISANH-GIELKGW-YFDSMLASYVLNAAATRHGM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 458 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIEIEVAAHYAAEDAH 502 Query: 169 ATRELFKRL------IPLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L P + E + + + + G R+D + KL A+ Sbjct: 503 VTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +++ G + + LF GI + T +S+L Sbjct: 563 EDLENQAMEIA-GETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKIEHP-- 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++IL + + L E +D T + TGR S QN+P Sbjct: 620 LTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP-- 677 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ AD + IE R++A + Sbjct: 678 ----------------------IRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFS 715 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D + AF +G+D++ T A+ I+ V+ +QR K + Sbjct: 716 QDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVN--------------FGL 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + K + + Sbjct: 762 LYGMSEF------------------------------GLIRQLGFTREESQNYIKQYFQR 791 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G+ + + + + + RRL D+ Sbjct: 792 YPGIYEYMQRTRQVASEQG--------------------------FVETILGRRLYTPDI 825 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + R Q + DI+ M K+ ++L VH Sbjct: 826 DARNVMVR---KAAERAAINAPL------QGSAADIIKLAMIEVDKILPKDQAKLLLQVH 876 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + + +M +PL E + K + Sbjct: 877 DELVFEVDSNIADELSKQIADVMQSVLE--ISVPLVVEVGQGKNW 919 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 385 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 113/692 (16%), Positives = 204/692 (29%), Gaps = 139/692 (20%) Query: 1 MSKL---FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAM 53 M L D ET S PL +A + +++W+ E + Sbjct: 366 MKTLDSFAFDTETTSLDPL----------EAKLVGISFSWEKGKGYYLPFPEDFDDAKNI 415 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + + + + + HN ++ + K GI I + + T + +L Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY-GIRIDGENF-DTMIAHYLLNPDMRHNLDV 473 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + GK + K + + T + F + E Sbjct: 474 LSETYLGYKPVSIETLIGKK--GKNQKNFREVDLIEQTEYGTEDSDVTFQLKNIFEPELE 531 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L E L + T+ G R+D+D + +L + ++ K+L++ I Sbjct: 532 KVSLTKLFRNI--EMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQKIFSEAGE 589 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF ++ T + ILS IL+ Sbjct: 590 EF-NLNSPKQLGDILFDKLKLEPKSKKTKTGQYSTGEEILSKLAH-YPIIKNILHYRQLQ 647 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L E V+ R+ T A TGR S QN+P Sbjct: 648 KLKSTYIDALPELVNPVTQRVHTTFAQTVA-ATGRLSSVNPNLQNIP------------- 693 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA K++ AD + IE R++A +A + +KAF Sbjct: 694 -----------IRTEEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQDPVMVKAFQ 742 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +GEDI+ +T AK F +D+V++EQR+ K + + Y L Sbjct: 743 DGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVS-----AFGLAQQTGLSNTE 797 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + +E + + + E + L+ R + + Sbjct: 798 AKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRR---------RRYLKDINSRNNT 848 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + +N Sbjct: 849 VRSHAER-----------------------------------------------NAVNAP 861 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-DIVLTVHDEIVSETPDTPYF 642 KL +Q K K ++L VHDE+V + P + Sbjct: 862 IQG---SAADIVKLAMIQIQ-----------KELDKKFATKMLLQVHDELVFDAPISEVE 907 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + + M +PL AE + Sbjct: 908 EVSKMIKTTMESVIQ--MEVPLVAEVGVGDNW 937 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 385 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + ++ Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTQ 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L+ L D V + + ++ + ++ G+++ T + + + Sbjct: 406 ALAQLVPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-HDTLLESFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P + E L + I G +D + + +++ Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M + ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDGWIAGHAQRAKMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 884 QVHDELVFEADTDFVDTLLSEVTTRMASAAE--LRVPLVVDSGIGDNW 929 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 94/691 (13%), Positives = 195/691 (28%), Gaps = 143/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ A + +++ + E+ + + Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ G + K D PP D R A + E + + Sbjct: 488 LHYQTIHIDELIGAR--GKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 545 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + I G +D + + + + ++++++I ++ G + Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNI 602 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 603 SSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKKLLST 662 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 663 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 703 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I G + AD + IE R++A ++ + I AF +G DI+ Sbjct: 704 ------IRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 757 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I+ V+ + R K G+ + ++ Sbjct: 758 AATAAKIYKIDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 799 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + + Sbjct: 800 --------------------------MGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAR 833 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + Sbjct: 834 ENGYVETIFH--------------------------RKRFLPDINSRNGVVRGYAERN-- 865 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + + ++L VHDE+ P+ Sbjct: 866 -------AINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 918 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + + +PLKA+ + Sbjct: 919 VQKIVIEEMEQA--YHMHVPLKADCGWGNNW 947 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 105/714 (14%), Positives = 202/714 (28%), Gaps = 171/714 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L +D ET S + QA + + + Sbjct: 360 LAVDTETTSLDEM----------QAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTALA 409 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L DE+++ + N ++ +F + I + T +++ Sbjct: 410 PGQMPMDEALAILKPVLEDESLLKIGQNMKYDWKIFARH---GIRVAPFDDTMLMSYAMF 466 Query: 105 LP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157 + L K GKA I + Y A + W Sbjct: 467 SGLHGHGMDALSEEYLRHRPIPIKELIGTGKAQITFDKVPLDKATAYAAEDAEITYRLWA 526 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 F R T +++ L ER L + + G ++D ++ ++ + AQ Sbjct: 527 AFKPQLHRAQVTT--VYETL------ERPLVPVLAEMEMAGVKVDPTVLARMSNVFAQRM 578 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH---SNI 270 L+E+I L G + L LF G+ + + T +L Sbjct: 579 AGLEEEIQALA-GQSFNVGSPKQLGEILFDKLGVPGGEKGKTGAYATGADVLEDITTMED 637 Query: 271 TQLAKDL---ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQ 326 + A DL +L+ + + L V+ D GR+ + GA+ TGR + Sbjct: 638 HKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAGAN-TGRLASTDPN 696 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R +A+ G ++V D + IE Sbjct: 697 LQNIP------------------------VRSDEGRRIREAFVATPGHRIVSLDYSQIEL 732 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA +A AFA G DI+ T ++ F P++ + R K + Sbjct: 733 RILAHVANLPEMKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINF--------- 783 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A ++ + + Sbjct: 784 -----GVIYGISGF------------------------------GLARNLRIPRSEAQGF 808 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + G+ + + R Sbjct: 809 IDRYFERFPGIRAYMDETVAFAKANG--------------------------FVQTLFGR 842 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ + + R +Q + DI+ M Sbjct: 843 KIHTP----EINAKGPGAGFAKRAAINAP------IQGAAADIIRRAMIRMPAAIAHLPA 892 Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E ++ + T ++M P+ +PL + + + Sbjct: 893 KMLLQVHDELIFEVAESAVDPLIATARAVMEGAADPAVRLSVPLVVDAGQGASW 946 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 97/708 (13%), Positives = 189/708 (26%), Gaps = 169/708 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D ET + QA + ++A Sbjct: 324 KVFAFDTETTDFNAI----------QAKLVGVSFAVSPHEAAYVPLGHDYTGAPAQLDKE 373 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + +L L D + N ++ + K G+ I +K + T + + Sbjct: 374 EVLRELKPLLEDPNKTIICQNLKYDAEVLAK-EGLTIRAKTY-DTLLASYVLNSSSTRHD 431 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + GK + + + Y D Sbjct: 432 LNTLALKYLGRIMVKFEDVAGKGVKQ---------------ISFNHVTLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 L++ KL + L+ L+ + + + T +++L + Sbjct: 537 IALLEQQAYKLAGREF-NLSSPKQLQTILYEELKLPIFKKTPGGQPSTAENVLQDLALDY 595 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + + L V R T + TGR S QN+P Sbjct: 596 PLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP- 654 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G ++V AD + +E R++A I Sbjct: 655 -----------------------IRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHI 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 692 SKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF--------------G 737 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + + Sbjct: 738 LLYGMSSF------------------------------GLGRQLGIGRDLAQEYIDIYFK 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + + RR+ D Sbjct: 768 RYPKVHEYMQKIRIVAFTQGY--------------------------VETLFGRRVYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVL 626 + A + +Q + DI+ M + +++ Sbjct: 802 IHASNMQRRRAAERAA---------INAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIM 852 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + M + A +PL + + Sbjct: 853 QVHDELVFEMAEKDLEKVIPQIKKAMEEAV--ALSVPLVVDVGVGGNW 898 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 101/708 (14%), Positives = 184/708 (25%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + D ET S PL QA + + A + Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGKAAYLPFGHNFPGAPVQLDRTH 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V V + ++ + ++ G+++ T + + + Sbjct: 406 ALAQLAPLLTDPAVRKVGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P D E L + I G +D + + +++ Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEDALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL S + L E + GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AFA+G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFASGTDVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 884 QVHDELVFEADVDFVDTLLSEVTTRMASAAE--LRVPLVVDSGVGDDW 929 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 96/708 (13%), Positives = 176/708 (24%), Gaps = 158/708 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ++ D ET PL A + + A Sbjct: 335 QVAFDTETTGLDPLR----------AELVGVSLATAPGRACYIPIKHDAGPAQGSLLLDP 384 Query: 51 ------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 + L L D +V+ + HN ++ + + + + T + Sbjct: 385 SPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTML 441 Query: 99 LARTNG---LPSSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANH 152 L+ + L+ GK I + Y A+ Sbjct: 442 LSYVLDGASHGHGMDELAKLHLDHDTIKFADVCGTGKNQITFDRVPLDKALAYAAEDAD- 500 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + E + ER L + + G ++D ++ L Sbjct: 501 ----ITLRLHGALKARLLAERMVTVYETL--ERPLVPVIVAMEAAGIKVDRTALMALSAE 554 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS 268 +L+ I L + L LF + ++ T L Sbjct: 555 FGGRMAELEVQIQNLAGREF-NVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADALEEL 613 Query: 269 NIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 +L+ S + L ++ GR+ + + TGR S Sbjct: 614 AAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALA-LTTTGRLSSSDPN 672 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R IA G L+ AD + IE Sbjct: 673 LQNIP------------------------IRSEEGRKIRHAFIAEPGHVLLSADYSQIEL 708 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R++A +A I+AF +G DI+ T A+ F P++ + R K + + Y Sbjct: 709 RLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYG---- 764 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L + + F + + +++ G Sbjct: 765 -ISAFGLAQQLGISNGEAKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGRKVFT- 822 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 G+ + G + I LP+ Sbjct: 823 --------PGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAM----------IRLPA-- 862 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 A++ + L ++L Sbjct: 863 -------------------------------------ALAAEGLK----------ARLLL 875 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P + + +M +PL AE + Sbjct: 876 QVHDELVLEVPVAEQDATRAVVCRVMESAAQ--LDVPLVAEAGFGTSW 921 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 111/705 (15%), Positives = 194/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A + +++ + + + Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDEVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELSGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + ++ + + G ID + IA +L Sbjct: 496 QLHHALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVEL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 556 EAQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+NGEDI+ T A+ F +V+ +QR I KV+ Sbjct: 710 ASLLRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVIN--------------FGLIY 755 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A +L + A++ Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q +D RRL ++ G Sbjct: 786 GVAQYMEDTRAIAKEKGYVETVF--------------------------GRRLWLPEING 819 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629 A R +Q + D++ M +++ VH Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVH 870 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P+ V L +M +PL AE + Sbjct: 871 DELVLEVPEAELPRVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 193/700 (27%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S P+ QA + +++ + Sbjct: 335 VALDTETTSLDPM----------QAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQLDFTAA 384 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L L D ++ + N +++ + GI + T + + + + Sbjct: 385 LRQLRPMLEDASIPKLGQNLKYDKHVLANH-GIALNGIT-HDTLLQSYVLESHRTHGMDD 442 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK + + EY D + T Sbjct: 443 LAMRHLGVQTVTYEQIAGKGAKQ---------------VPFSQISIETAAEYAAEDADIT 487 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P + E L + TI G ID ++ I Q+ Sbjct: 488 LQLHQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLID 547 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 L++ + + L+ LF GI + T + +L + Sbjct: 548 LEQQAYDIAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGAPSTDEDVLQELALDYPLP 606 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++L + + L ++ GR+ + A TGR + QN+P Sbjct: 607 KVLLEYRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVA-ITGRLASSDPNLQNIP--- 662 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G ++ AD + IE R++A ++ Sbjct: 663 ---------------------VRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQ 701 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ + AFA GEDI+ T A+ F P D+VS EQR KV+ L Y Sbjct: 702 DEGLLSAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMS-----AFGLA 756 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L++++ + F + + + E + G + Sbjct: 757 QNLNIERGAAQNYIDRYFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWV--------- 807 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + G ++ R L ++ Sbjct: 808 PEINSPNGMRRAGAERAAINAPMQGTAADLIKLAMIAVD------------RWLREHNLN 855 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 I+Q VHDE+V Sbjct: 856 SKI-----------------------IMQ------------------------VHDELVL 868 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L LM +PL AE K + Sbjct: 869 EVPDAELELVQQTLPQLMQGVAK--LDVPLLAEVGVGKNW 906 >gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] Length = 538 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 172/589 (29%), Positives = 261/589 (44%), Gaps = 74/589 (12%) Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYC 163 SL AL+ K GK LI +FC + ++ ++ +W F +Y Sbjct: 2 SLDAVGAALDLDVQ--KDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYN 59 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +RDVE + RL P+ + E D + LDQ IND G +D L L Q R Sbjct: 60 QRDVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATL 119 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +LT + L+ +L G ++ +++ +++ L + K+++ R Sbjct: 120 ARARELTGLE--NPNSPIQLKEWLT-THGCEMSSLAKADVEAALESATGK--VKEVLELR 174 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S++ K + +DGR RG +QFYGA RTGR++G + Q QNLPR + Sbjct: 175 GDLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQA 234 Query: 342 QTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +T+ + S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 235 RTLTRQRNLDALELLYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETS 294 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF +G+D+Y T ++ F P++K + E R GK+ LA GY G K M Sbjct: 295 TLAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG--- 351 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 A++ L + + AWRA + Sbjct: 352 -------------------------------------ALRMGLAEHELKPIVDAWRAANP 374 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 +++LW D+ + I+ R+ + L + I LPS RRL Y + Sbjct: 375 NIVRLWADVEQAALDA------ITTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQL 428 Query: 576 DCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + T + R TYGGKL ENIVQA++RD+L M + G+ IV+ Sbjct: 429 GENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVM 488 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV + P+ F++ C LMT P WA GLPL A+GYE YRK Sbjct: 489 HVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 112/705 (15%), Positives = 193/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A + +++ + + + Sbjct: 343 AFDTETTSLDPMT----------ARLVGLSFSVEPGKAAYLPVAHRGPDLPEQLPLDDVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + I + T + + + + Sbjct: 393 ARLKPWLEAADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A Y D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALDQAAAYAAEDADITL 495 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID L+ IA +L Sbjct: 496 QLHHVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIEL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 556 EGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNEPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AFA+GEDI+ T A+ F +V+ +QR I KV+ Sbjct: 710 ASLLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 755 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A +L + A++ Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q +D RRL ++ G Sbjct: 786 GVAQYMEDTRAAAKDQGYVETVF--------------------------GRRLWLPEING 819 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 A R +Q + D++ M + +++ VH Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVH 870 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L +M +PL AE + Sbjct: 871 DELVLEVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 196/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 355 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N ++ + + I++ T + + + Sbjct: 405 LAQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMD 462 Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + S + GK + PY A+ Sbjct: 463 SLALRFMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQD 522 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + +++ D E L + I G I+ L+ + IAQ +L++ + Sbjct: 523 DKLLSVYR------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDI 576 Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L+ F + + T + +L + +IL Sbjct: 577 AGQEF-NLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYRG 635 Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L + ++ GR+ + + TGR S QN+P Sbjct: 636 LAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP----------- 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A +G K++ D + IE R++A ++G+ ++AF Sbjct: 684 -------------IRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G+DI+ T A+ ID+V+ EQR K + G+ Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS---- 772 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + + + ++ GV+Q + Sbjct: 773 --------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYME 806 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D A + RRL + + N Sbjct: 807 DTRSTAAEQGY--------------------------VETLFGRRLHLP----EITSRNG 836 Query: 583 ATSQL-MRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY---DIVLTVHDEIVS 634 + R +Q + DI+ + M G +++ VHDE+V Sbjct: 837 MRRKAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVF 890 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ + + LM A +PL AE + Sbjct: 891 EVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 102/707 (14%), Positives = 189/707 (26%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 +D ET S P+ A + ++A + Sbjct: 351 FALDTETDSLDPMR----------ARLVGLSFAAEPGRAAYLPLGHDYPGAPAQLGYEQA 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D V + + ++ + ++ G+ + T + + + Sbjct: 401 LDLLRPLLADPAVRKIGQHGKYDLHVLRRH-GVAVAGYA-DDTLLESFVLDSGNARHDMD 458 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L ++ + GK + A Y D + Sbjct: 459 SLALRHLGYTTVKYEDICGKGVRQ---------------IPFSQCALDDATRYAAEDADI 503 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L D E L + + I G +D+D + + +++ Sbjct: 504 TLRLHRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRML 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 + E L G + L LF + T + L Sbjct: 564 EAQERATALA-GRSFNLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEALEAIADLHEL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L E V+ GR+ + GA TGR S QN+P Sbjct: 623 PRIILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGA-ATGRLSSSDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G+KLV D + IE R++A ++ Sbjct: 680 ----------------------IRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA+G DI+ T A+ F P+++V+ +R K + Sbjct: 718 QDPGLLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + ++ Sbjct: 764 MYGMG------------------------------AFGLARQLGIDRGQAQDYIALYFSR 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + E RRL + Sbjct: 794 YPGVRDYMERTREQARERGYVETVF--------------------------GRRLHLEYI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 + R +Q + DI+ M ++L Sbjct: 828 NARNAAQRAGA---ERAAINAP------MQGTAADIIKRAMIAVDAWIADHAQRARMLLQ 878 Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + V + LM+ +PL + + Sbjct: 879 VHDELVFEADEEFVPELVSRVPELMSAAGD--LSVPLVVDTGIGNNW 923 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 114/704 (16%), Positives = 204/704 (28%), Gaps = 157/704 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 352 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQIDLQD 401 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW----ICTSVLARTNG--LP 106 + L +L + + + N +++ +F GI + + + L Sbjct: 402 VLGRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGIALNGIAGDAMLASYIIESHLG 460 Query: 107 SSLKNACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 L L + GK I + Y A+ + Sbjct: 461 HGLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRA 519 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + D + E+++++ E + + + G +ID + + + E KL+++ Sbjct: 520 QMDAK-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQE 572 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDL 277 + L+ LF GI ++ T +++L + Sbjct: 573 AYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKI 631 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 632 ILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----- 685 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR A G +V AD + IE R++A ++G+ Sbjct: 686 -------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 726 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I AF NGED++ T A+ F + VS EQR K + G Sbjct: 727 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIYG 772 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + A++ G Sbjct: 773 MGQY------------------------------GLAKSLGIDNISAKNFIDRYFARYPG 802 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + + E A + RRL D+ Sbjct: 803 VAEYMQRTKEQAAAQG--------------------------FVETLFGRRLYLPDIHNK 836 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHD 630 + A + R +Q + D++ M + +++ VHD Sbjct: 837 NA---NARAGAERAAINAP------MQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHD 887 Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P+ V L +M K +PL AE + Sbjct: 888 ELVLEVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 931 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 118/721 (16%), Positives = 205/721 (28%), Gaps = 185/721 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + +D ET + A ++ + + + Sbjct: 391 YVAVDTETDALN----------AMESGLVGVSLSCTPGKACYIPLAHVDGEGDLLGGGAL 440 Query: 50 -QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + +P L L D V+ +A N ++ ++ K+ G+++ + T +L+ Sbjct: 441 LEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAP--FDDTMLLSYAL 497 Query: 104 GLPSS---LKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + LN + K G K+ I+ + Sbjct: 498 DAGMGGNGMDELSQRWLNHTPIPFKEVCGSGKSQISFDKVPLDKATA------------- 544 Query: 158 LFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVL 207 Y D + T L+K L P ER + + RG ID ++ Sbjct: 545 ----YAAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQMLS 600 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKS 263 L AQ +L+ +I + G I + L LF G+ ++ T S Sbjct: 601 LLSGEFAQGAARLESEIHDVA-GEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSAS 659 Query: 264 ILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 +L I+ S + L ++ GR+ + ++ TGR S Sbjct: 660 VLDDLAAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLA-STSTGRLS 718 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA GKKL+ AD Sbjct: 719 SSEPNIQNIP------------------------IRTSEGRKIRQAFIAEKGKKLISADY 754 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA +A +AFA+G DI+ T ++ F PI+ + R K + Sbjct: 755 SQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINF---- 810 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A + + Sbjct: 811 ----------GIIYGIS------------------------------AFGLANQLGIARG 830 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ ++ + Sbjct: 831 EAGDYIKTYFERFPGIKDYMEETKKFVHANGYVETIF----------------------- 867 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619 RR Y DV + Y +Q + DI+ M + Sbjct: 868 ---GRRAHYPDVNTKNPNMRQF---------YERAAINAPIQGSAADIIRRAMVRMDEVL 915 Query: 620 ----NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E P+ L + M K P+ +PLK E A Sbjct: 916 ETANLDAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEPALQLSVPLKVEAEAADN 975 Query: 673 Y 673 + Sbjct: 976 W 976 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 94/691 (13%), Positives = 195/691 (28%), Gaps = 143/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ A + +++ + E+ + + Sbjct: 380 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 430 PLFENEKSMKVGQNIKYDMIILQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ G + K D P D R A + E + + Sbjct: 488 LHYQTIHIDKLIGAR--GKNQKNMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 545 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + I G +D + + + + ++++++I ++ G + Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNI 602 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 603 SSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKKLLST 662 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 663 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 703 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I G + AD + IE R++A ++ + I+AF +G DI+ Sbjct: 704 ------IRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDIH 757 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I+ V+ + R K G+ + ++ Sbjct: 758 AATAAKIYKIDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 799 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + + Sbjct: 800 --------------------------MGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAR 833 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + R Sbjct: 834 EQGYVETIFH--------------------------RKRFLPDINSRNGVVRGYA---ER 864 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + + ++L VHDE+ P+ Sbjct: 865 NAINAP------IQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 918 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + + +PLKA+ + Sbjct: 919 VQKIVIEEMEQA--YRMQVPLKADCGWGNNW 947 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 189/700 (27%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET A + ++A + A Sbjct: 332 VCLDTETTGLD----------VMDARLVGMSFAITPHEAAYLPLAHRYPGVPDQLDLDAT 381 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 + L +L E + N +++ +F GI + T + + + + Sbjct: 382 LARLRPWLESEQHKKLGQNLKYDKHIFANH-GIALRGIS-DDTLLESYVLESHKSHDMDS 439 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + G+ + Y D + T Sbjct: 440 LALRHLGVKTISYEEVAGRGAKQ---------------ICFDQVDLDIATRYAAEDADIT 484 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P D E + + G +D +L+ + + Sbjct: 485 LQLHQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHELGVKLIA 544 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAK 275 L+ + + + ++ LF + + + T + +L + Sbjct: 545 LEARAHEAAEQPF-NLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELALDYPLP 603 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++L + + L + V+ GR+ + A TGR + QN+P Sbjct: 604 KILLEYRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVA-VTGRLASSDPNLQNIP--- 659 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G +V AD + IE R++A ++G Sbjct: 660 ---------------------IRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSG 698 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + ++AFA ED++ T A+ F T V+ EQR KV+ L Y Sbjct: 699 DAGLLQAFAKNEDVHRATAAEIFMTTPVDVTTEQRRYAKVINFGLIYGMS-----AFGLA 753 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L +++ + F + + ++Q + + + G L Sbjct: 754 KQLGIERGAAQAYIARYFARYPGVRDYMDSTREQAKQQGYVETVFGRRLWL--------- 804 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +G Sbjct: 805 PEINSSNAMKRQGAERAAINAPMQGT---------------------------------- 830 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 KL VQ K +++ VHDE+V Sbjct: 831 ----------------AADLIKLAMIQVQG---------WLETEKLKTRLIMQVHDELVL 865 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD + L LM + +PL E K + Sbjct: 866 EVPDDELSLIKASLPGLMCHVAN--LNVPLLVEVGSGKNW 903 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 115/694 (16%), Positives = 206/694 (29%), Gaps = 137/694 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAMPSD-----L 57 D ET S +P + + W ++P V +P + L Sbjct: 381 DTETTSLEP----------KDTTLVGIGCCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 L E V N+ F+RI+ GI + T + + L L + C Sbjct: 431 SVILESENYPKVFQNTKFDRIVLLN-KGIKLAGV-VFDTMLASYVLRPELSHKLSDLCER 488 Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172 N + E + + A+ F K E + Sbjct: 489 YLENIKALNYRDLEIPK-----TQTIAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQAP 543 Query: 173 -LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L++ L E+ L + + + G ID + +L + + Q+ + L+ + G Sbjct: 544 DLYELL---LKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYEAA-GE 599 Query: 232 IRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G++ T + L D IL + Sbjct: 600 SFNLGSPKQLSEILFEKLGLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEHRTLAK 659 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V GR+ + TGR S QN+P Sbjct: 660 LKSTYVDALPALVHPQTGRVHTDFNQAV-TTTGRLSSSNPNLQNIP-------------- 704 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I + LV AD + IE R+LA ++ E ++A+ N Sbjct: 705 ----------IRTEFSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPVLLEAYQNY 754 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D++ T F+ + ++ E+R+IGK + + Y GA + A GL Q+ Sbjct: 755 QDVHRVTAQLLFDK--EVITSEERSIGKTINFGVIYGMGA---QRFARSMGLSFQEGKD- 808 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + ++ + + G Sbjct: 809 -FIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGRRRY--------------------- 846 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + P ++ D LN + + Sbjct: 847 ----------------------FEFFDDKLNHLRGEKP-------ENLDLDKLNLNYSDA 877 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641 QL+R +Q S DI+ M + ++L VHDE+V E P + Sbjct: 878 QLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELVFEIPPDEW 931 Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M +PL + K + Sbjct: 932 EDLQVKIKDTMENAVK--LTVPLVVDIRSGKNWM 963 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 193/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLL 58 ID+ET S P +A + A + + +P L+ Sbjct: 316 FAIDLETTSLNP----------REARVVGYAASCRPHEAWYIPVGHRYLGAPEQLPESLV 365 Query: 59 -----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L+D + N ++ + + G ++ W T + A L Sbjct: 366 LEILGPLLKDPARRKIGQNLKYDYQVL-RIAGFELEGI-WCDTMLAAYLVNPARNSQGLD 423 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ C G Y D +A Sbjct: 424 ALALEYLDHRMISYAEVARSG---------------KCELNFSEVDLDRAGPYSCEDADA 468 Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L+P D E L + + G ++D+DL+ +L ++ + Sbjct: 469 TYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIE 528 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274 L+ I + G + L LF G+ + ++ T L Sbjct: 529 LEAQIHEHCGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEV 587 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + S + L + V+ GR+ + + TGR S QN+P Sbjct: 588 ARLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAV-TSTGRLSSSDPNLQNIP-- 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 G +R IA G ++ AD + IE RVLA ++ Sbjct: 645 ----------------------IRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ +AFA GEDI+ T ++ F + V+ E R Sbjct: 683 GDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQA--------------------- 721 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + A + + + ++ + Sbjct: 722 -----------------------KVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H G + RRL ++ Sbjct: 759 HSGARSFLDSCIREAEVCG--------------------------FVTTIMGRRLCIPEI 792 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 + + +Q + DI+ M + +++ Sbjct: 793 ASKNGNVRAFAQRN---------AVNYPIQGSAADIIKAAMLRVNRRMQEERVASRLIMQ 843 Query: 628 VHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ + L M +PLK + + Sbjct: 844 VHDELIFEVPEGERDLMEELVRTEMEAALP--LSVPLKVDLNFGLNW 888 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 204/712 (28%), Gaps = 163/712 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTE--QSAM-----PSDL 57 D ET + +P A + W + L Sbjct: 414 DTETTALEP----------RDAELVGIGCCWGTGEADLAYIPTGHKTGQNLDKAIVLEAL 463 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L D N+ F+R++ + GI + T + + +L C Sbjct: 464 RPILEDNNYPKALQNAKFDRLIL-RCQGIKLAGV-VFDTMLASYVIDPEGSHNLTALCKE 521 Query: 116 L----NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + K K A + YC DV T Sbjct: 522 YLEDPKLTAKSYKDLVSKEQ------------------TIADLAIPIVANYCGMDVYTTF 563 Query: 172 ELFKRLIPLSDG------------------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +L +L + E+ L + + +G RI+ + + +L + + Sbjct: 564 QLVSKLREKLEELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQEL 623 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHS 268 + + +++ ++ S L LF +D+ T ++L Sbjct: 624 ENKLQLIEQTAYEVAGEEF-SLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKL 682 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 IL S ++ L + V D GR+ A+ TGR S Sbjct: 683 QDDHEVVKTILEHRTLSKLKSTYVDALPQLVRPDTGRVHTDFNQA-ATGTGRLSSSNPNL 741 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P S +R + G +V AD + IE R Sbjct: 742 QNIP------------------------IRTEFSRQIRKAFLPKEGWLMVSADYSQIELR 777 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA + E ++A+ +D++ T F + V+ ++R +GK + + Y GA+ Sbjct: 778 ILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EKETVTPDERRLGKTINFGVIYGMGAQR 835 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 F + + + + + + + ++ ++G Sbjct: 836 F----ARSVEGVSPTQAKLFIERFNQRYSRVFEYLNRVKKDAIAQGYVSTILGRRRYFKF 891 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 EG S+ + ++V + + K Sbjct: 892 --------------------------EGESVRKLKDSDVQDINLATLKN----------- 914 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYD 623 + +QL+R +Q S DI+ M Sbjct: 915 ------------IGQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILKDRQAR 956 Query: 624 IVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E P + + + + M +PL + + + + Sbjct: 957 LLLQVHDELVLEVPPDEWEELQHKIKNTMENAVE--LSVPLVVDIHAGQNWM 1006 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 193/705 (27%), Gaps = 163/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------Q 50 + ID+ET S P A I ++++ D + Sbjct: 314 EFAIDLETTSLDP----------RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPR 363 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107 + L L + + N F+ + T G+ + R+ T + + Sbjct: 364 DLVLERLRPQLESPSPTKIGQNIKFDMQVLA-TNGVSLSGIRF-DTMLASYVLNPSRQGH 421 Query: 108 SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L G + + Y D Sbjct: 422 GLDALALEHLGHRMISYAEVTGSGKTQ---------------KNFSQVEIETASRYACED 466 Query: 167 VEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +AT L ++ PL E L + + + G +D+ L+ L + Sbjct: 467 ADATWLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSR 526 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-----EGTLKSILSHSNIT 271 L+ I +L G + L LF + + T +LS Sbjct: 527 MATLEGRIFQLA-GTTFNLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEE 585 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 LIL+ S + L V GR+ + + TGR S QN+ Sbjct: 586 HEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTV-TSTGRLSSSDPNLQNI 644 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G ++ AD + IE RVLA Sbjct: 645 P------------------------IRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLA 680 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G+ +AF + EDI+ T ++ F + V+ E R K + + Y G + Sbjct: 681 HLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQG-----S 735 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + L + + + ++ E +A Q E ++G + Sbjct: 736 FSLARQLGIARKTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIA---- 791 Query: 511 RAKHQGVLQLWKDLTEGF-ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + ++ + SA + Sbjct: 792 -----DITSTNGNIRAFAQRNAINYPIQGSAADIIKS----------------------- 823 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 R R+ G K +++ VH Sbjct: 824 ------------AMIRVDGRIRSEGLK-------------------------SRLIMQVH 846 Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E + ++ L M++ +PLK + + Sbjct: 847 DELVFEVREDELLAMELLVEEEMSRAVE--LRIPLKVDISHGVNW 889 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 102/727 (14%), Positives = 196/727 (26%), Gaps = 184/727 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + P+ A + ++A ++ + Sbjct: 364 KLVAVDTETNALDPML----------AELVGISFALENGEACYIPLAHVHQVAAQAENAQ 413 Query: 54 ---------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 S L L + + + N ++ +F GI Sbjct: 414 GDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPEIKKIGQNIKYDLTIFANN-GI 472 Query: 87 DIPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSP 143 ++ + T + + ++ + L + GK Sbjct: 473 NMQGVTF-DTMLESYVLNSTGRHNMDDLAERYLGHHTIAFEDIAGKGKNQL--------- 522 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQ 192 + EY D + T +L + L + E L + Sbjct: 523 ------TFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPLVSVLS 576 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I G ID +L + +Q+ L+ +L G + T L+ LF G+ Sbjct: 577 RIERNGVLIDSRALLAQSKEFSQKLTALENKAHELA-GQHFNLASTKQLQEILFDKLGLP 635 Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 + T + +L L++ S + L + V+ GR+ Sbjct: 636 VLKKTPKGAPSTNEEVLEELAYEHELPKLLVEHRGLSKLKSTYTDKLPQMVNRKTGRVHT 695 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P +R Sbjct: 696 SYHQAV-TATGRLSSSDPNLQNIP------------------------VRNEEGRRIRQA 730 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA G K++ AD + IE R++A ++ + AF+ G+DI+ +T A+ F ++ V+ E Sbjct: 731 FIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAE 790 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + L Y + L + + F+ + ++ +++ Sbjct: 791 QRRSAKAINFGLIYGMS-----SFGLSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIRE 845 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G L + + V Sbjct: 846 KAKSQGYVETLFGRRLYL---------PDIQSANAMRRKAAERVAINAPMQGTAADII-- 894 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + D+ + Sbjct: 895 -------------------KRAMIDIDKAITDDP-------------------------- 909 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAE 666 DIL M + VHDE+V E + + SLM +PL + Sbjct: 910 DIL---MI----------MQVHDELVFEVKEDKIEHYSALIKSLMENAAQ--LHVPLIVD 954 Query: 667 GYEAKRY 673 + Sbjct: 955 VGVGDNW 961 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + ++ Sbjct: 357 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQ 406 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ G+++ T + + + Sbjct: 407 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 464 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 465 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 509 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E L + I G +D + + +++ Sbjct: 510 ITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 570 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 628 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 629 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 687 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 724 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------G 769 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 770 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 799 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 833 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M N ++L Sbjct: 834 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMIL 884 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 885 QVHDELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 95/691 (13%), Positives = 195/691 (28%), Gaps = 143/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ A + +++ + E+ + + Sbjct: 387 ILSIDTETTGTEPM----------DAELVGMSFSDAENRAYYVPVPAEREEVLKIVNEFR 436 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 437 PLFENEKSMKVGQNIKYDMIILQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 494 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ G + K D PP D R A + E + + Sbjct: 495 LHYQTIHIDELIGAR--GKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAE 552 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + I G +D + + + + ++++++I ++ G + Sbjct: 553 HLF--YEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMA-GETFNI 609 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 610 SSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKKLLST 669 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 670 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 710 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I G + AD + IE R++A ++ + I AF +G DI+ Sbjct: 711 ------IRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIH 764 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I+ V+ + R K G+ + ++ Sbjct: 765 AATAAKIYKIDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 806 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + + Sbjct: 807 --------------------------MGVSRQEAKELIDGYFETYPQVKEYMDKSIQVAR 840 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + R Sbjct: 841 ENGYVETIFH--------------------------RKRFLPDINSRNGVVRGYA---ER 871 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + + ++L VHDE+ P+ Sbjct: 872 NAINAP------IQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKEL 925 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + + +PLKA+ + Sbjct: 926 VQKIVIEEMEQA--YRMYVPLKADCGWGNNW 954 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 192/702 (27%), Gaps = 161/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + +A + ++A + Sbjct: 350 FAFDTETTSLNYM----------EAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQV 399 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L DE V V N ++ + GI + + T + + + Sbjct: 400 LGKLKPLLEDENVKKVGQNLKYDASVLANH-GIALQGIAF-DTMLESYVVNSTANRHDMD 457 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + + GK + Y D + Sbjct: 458 TLALAHLGHTNISFEEIAGKGAKQL---------------TFNQIQLDQAAPYAAEDADI 502 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + G ID ++ + +A + + Sbjct: 503 TLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALIDATILGQQSAELAADLE 562 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 ++ + +L + L + LF GI ++ ++ T + +L + Sbjct: 563 RIQREAWELAGEEF-NLASPKQLGVILFEKLGIPVIKKTKTGAPSTAEEVLQELALDYPL 621 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + + + L ++ GR+ + + TGR S QN+P Sbjct: 622 PALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQAV-TATGRLSSTDPNLQNIP-- 678 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 A VR IA G ++V AD + IE R++A ++ Sbjct: 679 ----------------------IKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLS 716 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ AF G D++ T A+ F T ++ V+ EQR K + L Y Sbjct: 717 GDEGLTNAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMS-----AFGL 771 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + + F+ + + ++ E + L+G L Sbjct: 772 ARQLHIGRNDAQRYIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYL-------- 823 Query: 514 HQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + + SA + + + + + + Sbjct: 824 -PEINASNGMRRQAAERTAINAPMQGSAADIIKKAMIDVDKWLSTLKVDA---------- 872 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 M +VL Sbjct: 873 --------------------------------------KMIM-QVHDE---LVL------ 884 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + V TLC +M+ +PL E + Sbjct: 885 --EVAEDQIEPVTATLCDIMSAALK--LDVPLLVEAGVGMNW 922 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + ++ Sbjct: 357 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPVQLDRTQ 406 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ G+++ T + + + Sbjct: 407 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-EDTLLESFVLNSGSARHDM 464 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 465 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 509 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E L + I G +D + + +++ Sbjct: 510 ITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 570 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 628 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 629 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 687 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 724 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------G 769 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 770 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 799 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 833 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M N ++L Sbjct: 834 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIADHAQRAKMIL 884 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 885 QVHDELVFEADVDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 107/691 (15%), Positives = 200/691 (28%), Gaps = 144/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 + D ET PL A + A++W+ E + L Sbjct: 377 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRP 426 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + ++ + + N ++ + K +++ K T + ++ L Sbjct: 427 FFENDNIEKIGQNLKYDIKVLAKY-NVEVKGK-LFDTMLAHYLINPDMRHNMDVLAETYL 484 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ GK + + P T A + E ++ Sbjct: 485 NYTPISITELIGKKGKNQLSM--REVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQK 542 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L D E L + + G +D D + L E + + L++ I + + Sbjct: 543 LFN--DIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAAGEEF-NIA 599 Query: 237 QTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF + D ++ T + +LS+ +L+ S Sbjct: 600 SPKQLGVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFRGLSKLKSTY 659 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L V GR+ A TGR S QN+P Sbjct: 660 VDALPLQVDESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------- 699 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 VR + L+ AD + IE R++A ++ E+ I+AF NGEDI+ Sbjct: 700 -----IRTERGRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDIH 754 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 +T +K FN PI +V++EQR+ K + + Y D Sbjct: 755 ASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD----------- 798 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 L + + + + + A + + + + Sbjct: 799 ----------------------------LSRSEAKELIETYYATYPKLRAYMSEQVDFAR 830 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ + + A + Sbjct: 831 DNGYVQTVL--------------------------GRRRYLKDINSRNAVVRGAAERN-- 862 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M N K ++L VHDE+V + Sbjct: 863 -------AVNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVYKPELEG 915 Query: 644 VGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + L M +PL + + Sbjct: 916 LKNLIKTEMENAYE--LSVPLDVDLDIGANW 944 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 114/710 (16%), Positives = 194/710 (27%), Gaps = 155/710 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSA--------- 52 + +D ET P A + W + Sbjct: 400 VAVDTETTDLNPFK----------AQLVGIGVCWGAGLSDLAYIPVGHTDPALTQLPLEV 449 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + L +L + N+ ++R++ + G+ + + T + SL Sbjct: 450 VLEQLAPWLSSPSHPKALQNAKYDRLILLRH-GLVL-GGVVMDTLLADYLRDAAAKHSLD 507 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L GKA + YC DV Sbjct: 508 GMAERDYGITPTLFSDLVGKAKDGKAS-------------CFAEVPSDQAALYCAMDVHL 554 Query: 170 TRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 TR L L E L + + G RIDL + L + + + Sbjct: 555 TRRLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETL 614 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQ 272 +L+ D + + L LF G+D T ++L Sbjct: 615 TRLEADAKQAAGVDF-NLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDH 673 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L S ++ L + V + GR+ + TGR S QN+P Sbjct: 674 PVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIP 732 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 S +R + L+ AD + IE R+L Sbjct: 733 ------------------------VRTEYSRRIRKAFLPQEHWTLLSADYSQIELRILTH 768 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++GE+ +A+ +G+D++ T D VS ++R +GK + + Y GA+ F Sbjct: 769 LSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGMGAQRF--- 823 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + Q + E + + + + + ++G Sbjct: 824 --ARETGVSQTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVETIMGRRRPFHFDR-- 879 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 L K I L +RR Sbjct: 880 -----------------------------------NGLGRLLGKDPFEIDLDVARR---- 900 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 +Q +R +Q S DI+ M ++ Sbjct: 901 ---------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQHSLPARLL 945 Query: 626 LTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 L VHDE+V E + V L S M K +PL AE + Sbjct: 946 LQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAETGVGSNWM 993 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 118/724 (16%), Positives = 208/724 (28%), Gaps = 179/724 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQ--- 50 + D ET S P+ QA + + A D + Sbjct: 391 FVAFDTETTSLDPM----------QADLVGVSLALQDNAASPGAATIRAAYVPLGHKTGR 440 Query: 51 ------------SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + +P D L L D +V+ VA N ++ ++ K+ GI I + Sbjct: 441 DDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRH-GIVIRG--F 497 Query: 94 ICTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDC 147 T +L+ + + L + K G K+L+ + Sbjct: 498 DDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAGSGKSLVTFDLVDIDKATA--- 554 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDR 197 Y D + T L+ L P ER L + + +R Sbjct: 555 --------------YAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEER 600 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ID ++ +L +AQ+ +++I +L G + L LF + + Sbjct: 601 GITIDRQILSRLSGELAQKAAAFEDEIYELA-GERFNVGSPKQLGDILFGRMNLPGGSKT 659 Query: 258 E----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + T +L + I++ + + L V + T Sbjct: 660 KTGQWSTSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSM 719 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A+ TGR S QN+P +R+ I++ Sbjct: 720 AATTTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTP 755 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P+D + E R Sbjct: 756 GHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRA 815 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y L +++ FE + + + + E Sbjct: 816 KAINFGIIYG-----ISAFGLANQLSIERAEAGEYIKKYFERFPGIKDYMESTKAFVREH 870 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + G + + + + Sbjct: 871 GYVETIFGRRAH---------YPEIKSSNPSMRAFNERAAINAPIQGSAADVIR------ 915 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R +V + + L T Sbjct: 916 -------------RAMVQVEPALAKAGLGEKTR--------------------------- 935 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYE 669 M L VHDE++ E D + + S M P+ A +PLK + Sbjct: 936 -ML----------LQVHDELIFEVEDEAIEAALPVIVSTMENAAMPAIAMRVPLKVDARA 984 Query: 670 AKRY 673 A + Sbjct: 985 ADNW 988 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 103/710 (14%), Positives = 204/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET S + A + + T + Sbjct: 355 YVAVDTETTSLNEMR----------AELVGVSLCVTAGEACYIPLTHKSGAADDLFGDDA 404 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L D++++ + N ++ +FK+ +GID+ T +++ Sbjct: 405 LAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGIDVDP--IDDTMLMSYA 461 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ D+ Y A+ ++ Sbjct: 462 MNAGLHRHGMDVLSEQYLGHTPIPIKPLLGAGKSAKTFNRVPVEDAVRYAAEDADITLRL 521 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W++F R +++ + ER L + + G ++D D + ++ AQ Sbjct: 522 WEVFKPQLHRKQVT--SVYETM------ERPLVPVLAKMEMHGIKVDRDTLSRMSNAFAQ 573 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT 271 + L++++ +L G + + LF G++ T +L Sbjct: 574 KMAGLEDELYELAGGKF-NVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLEDLATE 632 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L ++ GR+ + GA+ TGR S QN+ Sbjct: 633 HDLPGRVLDWRQLSKLKSTYTDALQTHINAETGRVHTSYSITGAN-TGRLSSTDPNLQNI 691 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA GK LV D + IE R+LA Sbjct: 692 P------------------------IRTDEGRKIREAFIADEGKVLVALDYSQIELRILA 727 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +A D +AF +G DI+ T ++ FN P+D+++ + R K + Sbjct: 728 HVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINF------------- 774 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 775 -GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 803 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ D + R++ Sbjct: 804 FERFPGIRTYMDDTVAFAKE--------------------------HNRVETLFGRKIHT 837 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626 + + R +Q + D++ M ++L Sbjct: 838 P----EINAKGPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDDAIAHLPAKMLL 887 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE+V E + +M P +PL + + Sbjct: 888 QVHDELVFEVDKDAAEDLIAAARDVMENAANPVVKFDVPLVVDAGIGATW 937 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 195/700 (27%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 355 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWA 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N ++ + + I++ T + + + Sbjct: 405 LAQLKPILEDAQQAKVGQNLKYDASILARY-DINMQGIA-HDTMLASYVYNSVGGKHDMD 462 Query: 111 NAC-LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + S + GK + PY A+ Sbjct: 463 SLALRFMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQD 522 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + +++ D E L + I G I+ L+ + IAQ +L++ + Sbjct: 523 DKLLSVYR------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDI 576 Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L+ F + + T + +L + +IL Sbjct: 577 AGQEF-NLSSPKQLQTIFFDQMKLPVIKKTPSGTPSTNEEVLQELALDYPLPAVILEYRG 635 Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L + ++ GR+ + + TGR S QN+P Sbjct: 636 LAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP----------- 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A +G K++ D + IE R++A ++G+ ++AF Sbjct: 684 -------------IRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G+DI+ T A+ ID+V+ EQR K + G+ Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNF--------------GLIYGMS---- 772 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + + + ++ GV+Q + Sbjct: 773 --------------------------AFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYME 806 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D A + RRL + + N Sbjct: 807 DTRSTAAEQGY--------------------------VETLFGRRLHLP----EITSRNG 836 Query: 583 ATSQL-MRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY---DIVLTVHDEIVS 634 + R +Q + DI+ + M G +++ VHDE+V Sbjct: 837 MRRKAAERAAINAP------MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVF 890 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E ++ + + LM A +PL AE + Sbjct: 891 EVEESALSEIESKVQKLMESAA--ALKVPLVAEAGHGDNW 928 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 190/716 (26%), Gaps = 182/716 (25%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-------------- 51 D ET PL A + + A Sbjct: 343 FDTETTGLDPLR----------ARLVGVSLAVAPGRACYIPVLHAPAQAQGDLLGGPSTD 392 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + L L D +V+ V HN ++ + + + + T +L+ Sbjct: 393 APQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQ---GLAVEPFDDTMLLSYAL 449 Query: 104 G---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L CL L + G Sbjct: 450 DGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQ---------------VTFDRVPLDKA 494 Query: 160 GEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 +Y D + T L L P ER L + + G ++D ++ L Sbjct: 495 RDYAAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMAL 554 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 E + +L+ +++ L +G + L LF + ++ T +L Sbjct: 555 SEDFGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVL 614 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 +L+ S + L ++ GR+ + A+ TGR S Sbjct: 615 EELAPLHALPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYSLA-ATTTGRLSSSD 673 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R +A GKKLV AD + I Sbjct: 674 PNLQNIP------------------------IRTEEGRKIRHAFVAEPGKKLVSADYSQI 709 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A +A AFA+G DI+ T ++ F P+D + R K + Sbjct: 710 ELRLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDGIDPALRRRAKAIN-------- 761 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ A + + + Sbjct: 762 ------FGIIYGIS------------------------------AFGLAAQLGIPQGEAK 785 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 +A+ A++ + + E + Sbjct: 786 AYIEAYFARYPEIRAYMERTKEEARDQG--------------------------FVTTLF 819 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 R++ +K + R G +Q + DI+ M Sbjct: 820 GRKVFTPGIKDKNGAMRAFA---ERAAINGP------IQGGAADIIKRAMIRLPAALAAA 870 Query: 625 VL------TVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E P+ +V + +M S +PL E A + Sbjct: 871 GLSARLLLQVHDELVLEAPEAEADATVAVVKQVMEAAAS--LSVPLLVEAGIADTW 924 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 114/690 (16%), Positives = 211/690 (30%), Gaps = 129/690 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SAMPSDL 57 D ET P A + W E + Q + L Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQNGDNLNLEIVLEKL 420 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 L + V N+ F+ +F GI + T V + L +L++ C Sbjct: 421 RPILASDNYPKVFQNAKFDIDVF-YHQGITVKGL-VFDTMVASYVLHPELTHNLEDLCDR 478 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+L K D + A+ + K E T ++ Sbjct: 479 YL---DGITSLSYKSLGIPGGKTIADLDITTTANYCGLDAYATYLLREKLQAELT-KIPS 534 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 S+ E L ++ + + G +I+++ + L + + ++ +++ + G + Sbjct: 535 LYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLADIEKKAYESI-GETFNL 593 Query: 236 RQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF ++ T +S+L D IL S Sbjct: 594 GSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLIDYILEHRTLSKLKST 653 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + R+ + TGR S QN+P Sbjct: 654 YVDALPKLAEPKTARVHTDFNQT-ITSTGRLSSSNPNLQNIP------------------ 694 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 S +R I +G LV AD + IE R+LA ++ E ++A+ + +D++ Sbjct: 695 ------VRSEFSRRIRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVH 748 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T F+ +++ E+R++GK + + Y GA+ F + L Sbjct: 749 KVTAQLLFDK--GEITPEERSLGKTINFGVIYGMGAQKFARESK-----LTVEQGRKFIE 801 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + Q + + Q + ++G + + +L Sbjct: 802 KYHQRYAQVFQYLENSKKQAIAQGYVETILGRRRYFNFD-----NPLLKRL--------- 847 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R L D+ D LN +QL+R Sbjct: 848 ------------------------------------RGLSLHDIDLDSLKLNNEEAQLLR 871 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645 +Q S DI+ M + ++L VHDE+V E P + S+ Sbjct: 872 SAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVLEVPREEWPSLE 925 Query: 646 -TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M + S +PL E + Sbjct: 926 SKIKTTMEEAVS--LTVPLLVEIKAGDNWM 953 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 88/703 (12%), Positives = 184/703 (26%), Gaps = 166/703 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 D ET PL A + ++A + S + Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K + + T + + Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + EY D + T +L Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADVTLKLK 501 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P E L + + G +D + + + KL++++ Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + T + LF + T + +L +L Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L E ++ G++ + + TGR S QN+P Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I N AD + IE R++A ++G+ Sbjct: 673 -----------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G DI+ T AK + P++KV+ + R K G+ Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANF--------------GIIYGI 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + + + + Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + ++ + R+ D+ Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLPDINSHN 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL A+ E + + Sbjct: 877 LNFNIYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 111/727 (15%), Positives = 199/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51 + D ET S A QA + + A D ++ Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPSGTKIRAAYVPLAHKNGVG 448 Query: 52 ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 L L DE+V+ VA N ++ +L K+ I +K + T Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 550 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 551 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 610 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I G + L LF G+ ++ Sbjct: 611 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 669 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T S+L I++ + + L V + + T ++ T Sbjct: 670 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 729 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 730 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 765 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 766 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 825 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 826 --------------GIIYGISAFGLANQLSIE---------------------------- 843 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 844 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 882 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 883 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 926 Query: 618 T--------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PLK + Sbjct: 927 EPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVD 986 Query: 667 GYEAKRY 673 A + Sbjct: 987 ARAATNW 993 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 110/707 (15%), Positives = 199/707 (28%), Gaps = 161/707 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + D Sbjct: 462 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDK 521 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 522 QLEM--------YEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAA 573 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T + +L +IL Sbjct: 574 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKN 632 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S D R+ T A TGR +G QN+P Sbjct: 633 RSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVA-ITGRLAGNNPNLQNIP--------- 682 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 683 ---------------IRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + G+ Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTIN--------------FGLIYGMGQY 773 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A + + + + A++ GV + Sbjct: 774 ------------------------------GLAKSLGIDNLSAKNFIDRYFARYPGVAEY 803 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E ++ RRL D++ + + Sbjct: 804 MQRARECA--------------------------AGQGYVETLFGRRLYLPDIRHTNANI 837 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------------NGYDIVLT 627 ++ R +Q + D++ M + ++ +++ Sbjct: 838 R---ARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQ 888 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ V L +M +PL AE + Sbjct: 889 VHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 935 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 114/691 (16%), Positives = 206/691 (29%), Gaps = 144/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + D ET PL A + A++W+ TE + L Sbjct: 374 VCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPADKTEAQEIIEQLRP 423 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + DE + + N ++ + K + + K + T + +++ L Sbjct: 424 FFEDEAIEKIGQNLKYDIKVLDKY-NVKVKGKCF-DTMLAHYLINPDMRHNMEVLAETYL 481 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ GK + D P + T A + + E + Sbjct: 482 NYTPVSITELIGKKGKNQLNM--RDVPLPNQTEYAAEDADITYQLAQQFKPELEEAKTQE 539 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L +D E L + + G +D + L E + + KKL+ DI + + Sbjct: 540 LF--TDIEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEAGEEF-NIA 596 Query: 237 QTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + ++ T + +LS+ + +L+ + Sbjct: 597 SPKQLGDILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYRGLAKLKSTY 656 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L V GR+ A TGR S QN+P Sbjct: 657 VDALPAQVEESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------- 696 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 VR + LV AD + IE R++A ++ E I+AF NGEDI+ Sbjct: 697 -----IRTERGRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIEAFKNGEDIH 751 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 +T +K FN P+++V++EQR+ K + + Y D Sbjct: 752 ASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD----------- 795 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 L + + + + + L + Sbjct: 796 ----------------------------LSRAEAKELIDTYYKTYPKLKSYMGGLVDFAR 827 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ G + + A + Sbjct: 828 DNGYVQTVL--------------------------GRRRYLKDINGSNAIVRGAAERN-- 859 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M N K ++L VHDE+V + Sbjct: 860 -------AVNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEE 912 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + T + S M + +PL E + + Sbjct: 913 MKTLIKSEMENA--YKLEVPLDVEVGVGENW 941 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 112/705 (15%), Positives = 195/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + + Sbjct: 339 SFDSETTSLDPMV----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 389 AKLKPWLESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSL 446 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 447 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVALDKAAEYAAEDADITL 491 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P + E + + + G ID + + + IA +L Sbjct: 492 RLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSGEIATRLIEL 551 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 552 EGSAYELAGGEF-NLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVLQKLAEDYPLPK 610 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L V+ GR+ A TGR + QN+P Sbjct: 611 ILLEHRGLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 665 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G KLV AD + IE R++A I+G+ Sbjct: 666 --------------------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGD 705 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AF+ GEDI+ T ++ FN +VS +QR + KV+ Sbjct: 706 ESLMRAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVIN--------------FGLIY 751 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A ++ + A++ Sbjct: 752 GMS------------------------------AFGLASNLGITRDAAKMYIDRYFARYP 781 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + + RRL ++ G Sbjct: 782 GVARYMDETRLSAKAKGYVETVF--------------------------GRRLWLPEING 815 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 A R +Q + D++ M K G +++ VH Sbjct: 816 GNGPRRQAA---ERAAINAP------MQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVH 866 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE++ E PD V L LM A +PL AE + Sbjct: 867 DELILEVPDAELSEVRKRLPELMCGVA--ALKVPLVAEVGAGLNW 909 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 105/707 (14%), Positives = 188/707 (26%), Gaps = 165/707 (23%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------SAMP 54 D ET + A +A + + A + +P Sbjct: 433 DTETNALD----------AHRADLVGVSLATAPGRAAYIPLAHRGSEDLFGEGLLPDQLP 482 Query: 55 -----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + L L D V+ V N ++ ++ + GI+I + T +++ Sbjct: 483 WDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQP--YDDTMLISYVLDAGKGS 539 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L G Y Sbjct: 540 HGMDELARRHLGHQPITFADVTGTG---------------RAKVTFDRVPLDKATAYAAE 584 Query: 166 DVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 D + T L++ + P E L + + G R+D D++ +L +Q Sbjct: 585 DADVTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQ 644 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNIT 271 +L+ +I ++ G S + LF G+ T ++L Sbjct: 645 SLARLEAEIQEMA-GETFSVSSPKQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQ 703 Query: 272 -QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL S ++L E + T A+ TGR S QN+ Sbjct: 704 GHPLPRKILEWRQLSKLKSTYTDSLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNI 763 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A G +L+ AD + IE R+LA Sbjct: 764 P------------------------IRTEEGRRIRQAFVADAGHQLISADYSQIELRLLA 799 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +A +AFA+G DI+ T + F P+ +++ + R K + + Y Sbjct: 800 HMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINFGIIYG-----ISA 854 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + Q + FE + ++ + + L G C Sbjct: 855 FGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRVCH------ 908 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + R Sbjct: 909 ---YPQIRSNNPQERASVERQAINAPIQGTAADII---------------------RRAM 944 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 ++G + T M L VHD Sbjct: 945 VRMEGALAGAGLTTR----------------------------ML----------LQVHD 966 Query: 631 EIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRYR 674 E+V E P ++ + +M + P A +PL E A ++ Sbjct: 967 ELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQ 1013 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 190/708 (26%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A D+ + Sbjct: 351 FAFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D V N ++ + + I++ + T + + + Sbjct: 401 LEQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMD 458 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 459 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 503 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + I Sbjct: 504 TLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLD 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 564 ELEKKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 623 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 A +R +A +G K++ D + IE R++A ++ Sbjct: 680 ----------------------IRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ I+ VS EQR K + Sbjct: 718 GDQALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 764 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDTYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 794 YPGVMQYMEDTRSTAADKGYVETIF--------------------------GRRLHLPEI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 828 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 878 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 879 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 111/727 (15%), Positives = 200/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51 + D ET S A QA + + A D + ++ Sbjct: 134 VAFDTETTSLD----------AMQAELVGISMAIADNVADPSGTKIRAAYVPLSHKNGVG 183 Query: 52 ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 L L DE+V+ VA N ++ +L K+ I +K + T Sbjct: 184 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 240 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 241 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 285 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 286 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 345 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I G + L LF G+ ++ Sbjct: 346 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 404 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T S+L I++ + + L V + + T ++ T Sbjct: 405 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 464 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 465 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 500 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 501 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 560 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 561 --------------GIIYGISAFGLANQLSIE---------------------------- 578 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 579 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 617 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 618 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 661 Query: 618 T--------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PLK + Sbjct: 662 EPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVD 721 Query: 667 GYEAKRY 673 A + Sbjct: 722 ARAATNW 728 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 112/693 (16%), Positives = 204/693 (29%), Gaps = 135/693 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-------SAMPSDL 57 D ET + P +A + W ++P + + + L Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVLDRL 434 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L V N+ F+R++FK GI++ + T + + L C Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLDGV-VLDTMLASYVLHPEKSHKLSELCEQ 492 Query: 116 L--NFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K GK D + A+ F E + Sbjct: 493 YLEGITSLDYKDLGIGKKQ------TIADLDIETVAEYCGMDAYATFLLVEPLKNEL-KT 545 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L L + E+ L + + D G ID + + KL + + Q L+E+ + Sbjct: 546 LSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKF 605 Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF ++ T + L D IL S Sbjct: 606 -NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKL 664 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L E V D R+ + TGR S QN+P Sbjct: 665 KSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIP--------------- 708 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 S +R I LV AD + IE R+LA ++ E + A+ N + Sbjct: 709 ---------IRTEFSRQIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNAD 759 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T F+ ++++ ++R +GK + + Y G++ F A + Sbjct: 760 DVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRFAREA-----GVSAVEGKE 812 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + M+ + ++G Sbjct: 813 FINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRY---------------FNFFDDN 857 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + +I ++ +N SQ Sbjct: 858 LYRFRGHDPQNIDLNKI-----------------------------------NINYNDSQ 882 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642 L+R +Q S DI+ M + +++L VHDE+V E P + Sbjct: 883 LLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVFEIPHQEWE 936 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M + +PL E K + Sbjct: 937 ELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 89/703 (12%), Positives = 185/703 (26%), Gaps = 166/703 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 D ET PL A + ++A + S + Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K + + T + + Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + EY D + T +L Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADITLKLK 501 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P E L + + G +D + + + KL++++ Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + T + LF + T + +L +L Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGKLL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L E ++ G++ + + TGR S QN+P Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I N AD + IE R++A ++G+ Sbjct: 673 -----------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G DI+ T AK + P++KV+ + R K G+ Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANF--------------GIIYGI 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + + + + Sbjct: 762 SVFGLAER------------------------------LGIPRSESKELIDGYFSTYPRI 791 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + ++ + R+ SD+ Sbjct: 792 KEYMEESIKVAKEKGYVETIFK--------------------------RKRFLSDINSHN 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 826 AVVRGYA---ERNAINAP------IQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDE 876 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL A+ E + + Sbjct: 877 LNFNVYKEEAEEVKKIVLEEMENVMK--LQVPLIADCGEGENW 917 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 100/706 (14%), Positives = 196/706 (27%), Gaps = 171/706 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 ID ET + + A + + A+D Sbjct: 348 HFAIDTETTNLD-------YRIA---ELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + L +E V + H+ ++ +F GI I + T + + + Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQGW-YFDTMLASYVLNAAATRHGM 455 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK ++ + ++ Y D Sbjct: 456 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KSFNQIELEVAAHYAAEDAH 500 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L E + + + + G ++D + +L ++ Sbjct: 501 VTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETM 560 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +L G + + LF G+ + T +SIL Sbjct: 561 QTLENQATELA-GEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKIEHP-- 617 Query: 274 AKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 ++IL + + L E S R+ + + TGR S QN+P Sbjct: 618 LAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQA-LTATGRLSSTDPNLQNIP- 675 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G+ L+ AD + IE R++A Sbjct: 676 -----------------------IRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHF 712 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + +D + AF G+D++ T A+ I+ V+ +QR K + Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFTREESRSYIARYFQ 788 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + + + RRL D Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628 + + + A R Q + DI+ M K+ ++L V Sbjct: 823 ILANNKMIKQAA---ERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E +T + + +M +P E + + + Sbjct: 874 HDELVFEADETIADELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 191/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 +D ET S + A QA + + + + Sbjct: 346 AVDTETTSLE----------AMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQLSRQHVL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L +L D + + + ++ +F G+ + + T + + P + + Sbjct: 396 EKLKPWLEDASKPKLGQHLKYDSHIFANY-GVRLAGVK-HDTLLESYVFESHRPHDMDSL 453 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L GK + A + EY D E T Sbjct: 454 AARHLERKTITYAEVCGKGASQIG---------------FNEVAIERATEYAAEDAEVTL 498 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + + P + E ++ Q I G ID + + + + + ++ Sbjct: 499 ALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERLGQQSHDLGKRMLEI 558 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ L + L LF + +V + T + +L Sbjct: 559 EQQAYDLAGQPF-NLNSPKQLGEILFGKLELPVVKKTASGAPSTDEEVLQKLAEDYPLPK 617 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L+ + + L + V+ GR+ A TGR S QN+P Sbjct: 618 VLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVA-VTGRLSSNDPNLQNIP---- 672 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G +V AD + IE R++A I+ + Sbjct: 673 --------------------IRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISED 712 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + +KAFAN EDI+ T A+ F ++V EQ Sbjct: 713 ENMLKAFANNEDIHRATAAEIFGIAPEQVESEQ--------------------------- 745 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + L A + A ++ + + Sbjct: 746 -----------------RRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKYFMRFS 788 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + + RRL ++ Sbjct: 789 GVKRYMDETRLQAKARGYVETVF--------------------------GRRLWLPEINS 822 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629 R +Q + D++ M +++ VH Sbjct: 823 PNGPRRQGA---ERAAINAP------MQGTAADLIKMAMIAVQDWLETNSLQTRMIMQVH 873 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P V L LM +PL AE K + Sbjct: 874 DELVLEVPQQELEMVREKLPELMKNVAE--LKVPLLAEVGIGKNW 916 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 95/694 (13%), Positives = 191/694 (27%), Gaps = 149/694 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58 L +D ET P+ A + +++ + + + Sbjct: 393 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 442 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +++ + V N ++ ++ + GI+I R T V L ++ Sbjct: 443 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIRG-RLFDTMVAHYVLQPELRHNMDYLAEIY 500 Query: 116 LNFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L++ + G K D Y C A+ + E + +A Sbjct: 501 LHYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE-- 558 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L + E L + I G R+D + + + E + ++++I L Sbjct: 559 ---KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEF 613 Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I + ++ T + +L IL Sbjct: 614 -NIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKKL 672 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 673 LSTYIDALPQLINPRTGRIHTSFNQTV-TATGRLSSSNPNLQNIP--------------- 716 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I +G AD + IE R++A ++ + I AF +G Sbjct: 717 ---------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGY 767 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T AK + I +V+ + R K G+ + ++ Sbjct: 768 DIHAATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER- 812 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + V + Sbjct: 813 -----------------------------MNVDRKEAKELIDGYFETYPQVKAYMDKSIQ 843 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ D+ + + Sbjct: 844 VAREHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA-- 875 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ M + ++L VHDE+ P Sbjct: 876 -ERNAINAP------IQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKE 928 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M K + +PLKA+ + Sbjct: 929 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 960 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 106/714 (14%), Positives = 209/714 (29%), Gaps = 170/714 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + +D ET S + A + + ++ Sbjct: 346 HVAVDTETTSLDEMR----------ADLVGISLCVAAGQACYIPLAHKAGADDLFGSDAR 395 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 A + L L D +++ + N ++ +F LGI + T +++ Sbjct: 396 AEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKIFA-LLGIAVAP--IDDTMLMSYAM 452 Query: 104 GLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L K + GK+ I D+ Y A+ ++ W Sbjct: 453 HAGLHNHGMDTLSERYLGHIPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADVTLRLW 512 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q+F + T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 513 QMFKPQLHQSRVTT--VYETL------ERPLVPVLAQMEMHGIKVDRDTLSRMSNAFAQK 564 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKSILSH 267 L+++I K+ + L LF G+ + T +L Sbjct: 565 MAGLEDEIQKMAGRPF-NVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGADVLED 623 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQ 326 IL+ + + L + ++ D GR+ + GA TGR + Sbjct: 624 LATIHDLPRRILDWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIAGA-ITGRLASTDPN 682 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R +A+ G +V D + IE Sbjct: 683 LQNIP------------------------VRSDEGRRIREAFVAAPGNVIVSLDYSQIEL 718 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA IAG D +AF +G DI+ T ++ F+ P+D+++ + R K + Sbjct: 719 RILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAIN---------- 768 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A ++ + + Sbjct: 769 ----FGVIYGISGF------------------------------GLARNLRIPRSDAQGF 794 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + G+ Q D + R Sbjct: 795 IDRYFERFPGIRQYMDDTVAFARDRGY--------------------------VQTLFGR 828 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GY 622 R+ + + R +Q + D++ M K Sbjct: 829 RINTP----EINTKGPQAGFAKRAAINAP------IQGTAADVIRRAMIRMPKAIAGLPA 878 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E T + + +M P+ + L + + + Sbjct: 879 KMLLQVHDELLFEVDATAADDLIGIARQVMETASDPAVKLDVKLSVDAGQGPNW 932 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 193/695 (27%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 343 AFDTETTALDPMI----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDEVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170 L + GK + QL Y + EA Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R D E + L+ + + G ID L+ IA +L+ +L G Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L L+L S Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ GR+ A TGR + QN+P Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IAS G ++V AD + IE R++A I+G+ ++AFA G Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F +V+ +QR I KV+ G+ Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 A + A +L + ++ GV Q +D Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTR 795 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 796 TAAKDKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M + +++ VHDE+V E PD Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELVLEVPDD 880 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M +PL AE + Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 194/700 (27%), Gaps = 163/700 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + +D ET S + +A + ++A +++ E + + Sbjct: 357 ISLDTETTSTNAI----------EAQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRFKA 406 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 + + V N ++ + + GI + T V L ++ L Sbjct: 407 IYENPKTLKVGQNIKYDLEVLRNY-GIALQG-PLFDTMVAHYLLQPELRHNMDFMAEVYL 464 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ G P + A Y D + T +L Sbjct: 465 NYETVHIDALIG--------------PKGKAQKNMRELAPSEVYNYACEDADITLQLKNV 510 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G RID + + ++ + +L+++I + Sbjct: 511 LQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ 570 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 G + + LF I D ++ T + +L IL+ Sbjct: 571 AA-GKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDY 629 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A ++ L + ++ G + + + TGR S QN+P Sbjct: 630 RALKKLLGTYVDALPKLINPRTGHIHTSFNQAV-TATGRLSSSDPNLQNIP--------- 679 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G +R C I G + AD + IE RV+A ++ + + Sbjct: 680 ---------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF G DI+ T AK +N P+ +V++++R K + G+ + Sbjct: 725 AFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGII--------------YGITVF 770 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + + + V Q Sbjct: 771 GLADRLNIERA------------------------------EAKQLIDGYFKMFPQVQQY 800 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E RR D+ + Sbjct: 801 MEQAKETARANGYVETFFH--------------------------RRRYLPDINSGNA-- 832 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVS 634 T + R +Q + DI+ M ++L VHDE+ Sbjct: 833 -TVRAIAERNAINAP------IQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNF 885 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 T V + M + +PL A+ + Sbjct: 886 SVLPTEKEQVERIVMEEMQAA--YLLDVPLVADSGWGNNW 923 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 103/721 (14%), Positives = 187/721 (25%), Gaps = 185/721 (25%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------------- 49 D ET S A A + + A T Sbjct: 379 FDTETSSLS----------ATHAGLCGVSLAVGPNEACYIPLTHEHEPQAGEGGLFGVPG 428 Query: 50 --QSAM--------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + + L L + +V+ V N+ ++ + + I + T ++ Sbjct: 429 EAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKYDLAVMARR---GIRVAPYDDTMLI 485 Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + + L K G ++ A Sbjct: 486 SYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQ---------------KSFRHVA 530 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDL 205 + +Y D + T L++ L P E R L + + G RID D Sbjct: 531 LKPATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDR 590 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261 + +L +L+ ++ + + LF + + T Sbjct: 591 LKRLSSEFGLRMAELEAQAHEIAGRPF-NIGSPRQIGEILFGELNLPGGKKTASGQWGTD 649 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 S+L T ++L+ S + L+ A T A+ TGR + Sbjct: 650 ASVLEDLAATHALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQLAAATTGRLA 709 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA+ G L+ AD Sbjct: 710 SSDPNLQNIP------------------------IRTETGREIRQAFIAAPGHLLISADY 745 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA I +AF G DI+ T ++ F P++ + E R K + Sbjct: 746 SQIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINF---- 801 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ + + Sbjct: 802 ----------GIVYGISAFGLAAQ------------------------------LGIDQG 821 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ + Sbjct: 822 EAGAYIKTYFDRFPGIRTYMDKTRAEVRQAG--------------------------FVS 855 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617 RR+ + R +Q + DI+ M Sbjct: 856 TVFGRRIHIPAIHSKSGAERQFG---ERAAINAP------IQGAAADIIRRAMIRMPTAL 906 Query: 618 TKNGY--DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672 + G ++L VHDE+V ETP+ ++ + +M P+ A +PL + A Sbjct: 907 AEAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVMETASDPAVALTVPLVVDARAAPN 966 Query: 673 Y 673 + Sbjct: 967 W 967 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 107/702 (15%), Positives = 210/702 (29%), Gaps = 164/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 +L D ET S A +A + ++A+ E + L Sbjct: 369 QLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLK 418 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 ++E ++ + N ++ ++ K +++ K T + S+ Sbjct: 419 PVFQNEKILKIGQNIKYDLLILKNY-DVEVKGK-LYDTMLAHYLIEPEGKHSMDWLAEQY 476 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN+ GK + +D EY D + T +L + Sbjct: 477 LNYQPVSITELIGKKGKNQGNMRDVDV--------------DQVTEYASEDADITLQLKE 522 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L P + E L + + G RID + ++ + +E K+++ + Sbjct: 523 KLDPFLKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVY 582 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILN 280 ++ G+ + L LF +D ++ T + ILS IL+ Sbjct: 583 EIA-GVRFNLASPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIARAILD 641 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L ++ G++ T + A TGR S QN+P Sbjct: 642 FRQMVKLKSTYVDALPTMINSKTGKIHTTYNQFVA-ATGRLSSINPNLQNIP-------- 692 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + L+ AD + IE R++A +G++ Sbjct: 693 ----------------IRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDESM 736 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF NG DI+ TT AK F P+++V+ + R K G+ Sbjct: 737 IEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANF--------------GIIYGIS 782 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 SQ + + T + + A+ + V Sbjct: 783 AFGLSQRLS------------------------------ISRTEAKEIIDAYFKEFPAVK 812 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E D ++ RR D+ + Sbjct: 813 EYMDRAIEKAR--------------------------NDEYVETLLGRRRYLRDINSRNA 846 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEI 632 + + +Q + D++ M + ++L VHDE+ Sbjct: 847 TMRGFAERN---------AINAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDEL 897 Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + + + LM+ +P++ E + Sbjct: 898 VFDAHKDEVEILKKNIPELMSNAIK--MDVPVEVEVGTGDDW 937 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 191/708 (26%), Gaps = 172/708 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A D+ + Sbjct: 351 FAFDTETDNLDYML----------ANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D V N ++ + + I++ + T + + + Sbjct: 401 LEQLKPILEDAAKAKVGQNLKYDASVLARY-DIELKGIK-HDTMLESYIYNSVGGKHDMD 458 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + + Y D + Sbjct: 459 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIELEQASPYAAEDADV 503 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L RL + E L + I G ID + I Sbjct: 504 TLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDEMKLSAQSVEITARLD 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ + + L+ LF G+ + T + +L + Sbjct: 564 ELEKKAYEIAEQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + ++ GR+ + + TGR S QN+P Sbjct: 623 PKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 A +R +A +G K++ D + IE R++A ++ Sbjct: 680 ----------------------IRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ I++VS EQR K + Sbjct: 718 GDQALLDAFRDGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNF--------------GL 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 764 IYGMS------------------------------AFGLAKQLGIPRGEAQAYMDKYFER 793 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A RRL ++ Sbjct: 794 YPGVMQYMEDTRSTAADKGYVETIF--------------------------GRRLHLPEI 827 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVL 626 K R +Q + DI+ + M +++ Sbjct: 828 KSRNGMRR---KAAERAAINAP------MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLM 878 Query: 627 TVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + LM +PL AE + Sbjct: 879 QVHDELVFEVEESSLSEIESKVQKLMESAAE--LKVPLVAEAGHGDNW 924 >gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul] gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul] Length = 693 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 178/729 (24%), Positives = 292/729 (40%), Gaps = 96/729 (13%) Query: 3 KLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ++ +D E+RS + LP G+ Y+ E I + +++++ V+ W+ + P+++ + Sbjct: 4 EIRLDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEIRDGK-FPAEVREA 62 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V+ A N+ FER++ ++ L I+ P K W CT A +L+ L + Sbjct: 63 LEDPNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQ 122 Query: 121 HLTKMEEGKALIARFCKG---SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K+ GK LI F K + +P + W F Y ++DV A + + L Sbjct: 123 DKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEWL 182 Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 P D E +L+ LDQ INDRG +DLD + + + +L + +T + Sbjct: 183 APYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITGLE--NP 240 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL----AKDLILNRLASSGSAILK 291 L+ ++ G D+ + T+K +L+ + +++ R+ S+ +++ K Sbjct: 241 NSPQQLKPWVKAR-GYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGK 299 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE------------- 338 V RLR LQF GA RT RW+G Q NL R ++ E Sbjct: 300 YKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVT 359 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + G + +P+ + CVRS I A G + V DL+ IE V+AW+A Sbjct: 360 NAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPL 419 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + F G Y + + +V+ + R + K L GY+ G GL Sbjct: 420 LNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL- 478 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + M + K +R + V Sbjct: 479 --------------------WGYAENMG---------IDMSRQEAHDSVKMYREAYPEVP 509 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 QLWKDL ++ R + + +LPS RR+ Y + + Sbjct: 510 QLWKDLEAAIIRTIKTKAVTRVRY------VSFEIVGEFLVAILPSGRRMYYHRPRIEKK 563 Query: 579 -------------------------------YLNTATSQLMRERTYGGKLTENIVQAISR 607 N + +R+ ++GGK+TEN+VQAI+R Sbjct: 564 KFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAR 623 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAE 666 +IL G+ NA K G +IVL VHDEIV+ + L MT W + +P+ A Sbjct: 624 EILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAA 683 Query: 667 GYEAKRYRK 675 G+ A YRK Sbjct: 684 GWSAAFYRK 692 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 203/706 (28%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + ID ET S P+ QA + ++ + + Sbjct: 341 VSIDSETTSLNPM----------QAKLVGISFCVESHHAAYLPLMHRYPGVPQQLSFDRA 390 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 L +L T + N +++ +F I + T + + P ++ + Sbjct: 391 LKKLKPWLESATKPKLGQNLKYDKHVFANH-DIQLNGIA-HDTLLQSYVLESHRPHNMDS 448 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ GK + A +Y D + T Sbjct: 449 LALRHLDVKTISYDDVTGKGVKRIG---------------FDEVAIDTATQYAAEDADIT 493 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E + + I G +D L+ K + ++ Sbjct: 494 FRLHQALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHA 553 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L++ ++ + ++ LF + +V + T + +L + Sbjct: 554 LEQQAYDISGQPF-NLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQQLALDYPLP 612 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+LN + S + L + + GR+ A TGR + QN+P Sbjct: 613 KLLLNYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVA-VTGRLASSDPNLQNIP--- 668 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +++ AD + IE R++A I+ Sbjct: 669 ---------------------VRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQ 707 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ +KAFA GEDI+ T A+ P+++V +EQR KV+ Sbjct: 708 DEGLLKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVIN--------------FGLI 753 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + +A + + A++ Sbjct: 754 YGMSEF------------------------------GLATQLGIERSAARAYMERYFARY 783 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 V + E + + RRL ++ Sbjct: 784 PKVESYMQQTREKARRLGYVETVL--------------------------GRRLWLPEIN 817 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628 R +Q + DI+ M K +++ V Sbjct: 818 NANGNRRQGA---ERAAINAP------MQGTAADIIKLAMIAVHSWLHKEKLHSKLIMQV 868 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E P+ + +L M +PL E + Sbjct: 869 HDELVLEVPENEVALIKSSLPKYMGDVLQ--LDVPLVIEIGVGDNW 912 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 204/700 (29%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSNN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GI++ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLNSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYASEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F P++KV+ EQR K + L Y Sbjct: 722 QDEGLLTAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q + L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 111/713 (15%), Positives = 194/713 (27%), Gaps = 163/713 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---SAMPSDL- 57 + D ET P A + W ++ + + ++P L Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGEDLDALAYIPLGHKGSEDSIPEQLS 441 Query: 58 --------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--S 107 +L N+ ++R++ + GI + I T + Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GIALEGV-VIDTLLADYLRDASAKH 499 Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L+ F GK + YC D Sbjct: 500 GLELMAEREFGFQPTSFTDLVGKKQ------------------TFADVPLEPASLYCGMD 541 Query: 167 VEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 V TR L L + E+ L + + G RID+ + L E + Sbjct: 542 VHVTRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMG 601 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSN 269 ++L+ D + L LF G+D T ++L Sbjct: 602 STLQQLESDAKAAAGVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLG 660 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+L+ S ++ L + V + GR+ + TGR S Q Sbjct: 661 NDHPVVPLVLDHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 719 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P S +R + G L+ AD + IE R+ Sbjct: 720 NIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQIELRI 755 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 L ++GE +A+ G+D++ T D+VS ++R +GK + + Y GA+ F Sbjct: 756 LTHLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGAQRF 813 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + Q + + + + + + ++G Sbjct: 814 -----ARETGVSQSEAKEFLVKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFD 868 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 L K + I L +RR Sbjct: 869 R-------------------------------------NGLGRLLGKDPLEIDLDVARR- 890 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD----- 623 +Q +R +Q S DI+ M Sbjct: 891 ------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALLRQGLPA 932 Query: 624 -IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + L M + +PL E + Sbjct: 933 QLLLQVHDELVLEVAPDALETTRDLVVRTMEQAFE--LSVPLVVETGVGANWM 983 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 112/719 (15%), Positives = 205/719 (28%), Gaps = 183/719 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET S P+ QA + A A + + Sbjct: 390 VALDTETTSLDPM----------QAELCGIALATAPNRAAYLPLSHKNGAEDLLGGGMVD 439 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L L+D +V+ + N ++ +L + GI+I + T +++ Sbjct: 440 GQIRVEEALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH-GIEIAP--YDDTMLISYVLEA 496 Query: 106 P---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + + Sbjct: 497 GTQAHGMDALAERWLGHTPVSYKEVTGSG---------------RSKVTFDMVGLERATV 541 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+K L P ER + + + RG +D ++ ++ Sbjct: 542 YASEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSG 601 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267 AQ ++E+I +L G L LF G+ ++ T +L Sbjct: 602 DFAQTAAAMEEEIYRLAGGRFT-IGSPKQLGDILFGRMGLPGGAKTKSGQWSTSAQVLEE 660 Query: 268 SN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 +L + ++ R + + + L + GR+ + ++ TGR S Sbjct: 661 LAAAGHELPRKIVDWRQVTKLKST-YTDALPGYIHPETGRVHTSYSLA-STTTGRLSSSE 718 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R+ IA+ G KL+ AD + I Sbjct: 719 PNLQNIP------------------------VRTPEGRKIRTAFIAAPGYKLISADYSQI 754 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +A KAFA G DI+ T ++ F P++ + E R K + Sbjct: 755 ELRVLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINF------- 807 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ A + + Sbjct: 808 -------GIIYGIS------------------------------AFGLANQLSIPRDEAG 830 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 K + + G+ + Sbjct: 831 AYIKRYFERFPGIRDYMERTKAFCREKGYVETIF-------------------------- 864 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RR Y +++ + R +Q + DI+ M Sbjct: 865 GRRAHYPEIRSSNPSVRAF---NERASINAP------IQGSAADIIRRAMMRMEAALADS 915 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ + +M P+ + +PLK + A + Sbjct: 916 GLVDVKMLLQVHDELVFEAPEDAIERAIPVIRTVMEGAAWPARSLSVPLKVDARAADNW 974 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 98/708 (13%), Positives = 188/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + ++ Sbjct: 357 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGVPVQLDRTQ 406 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ G+++ T + + + Sbjct: 407 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 464 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 465 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 509 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E L + I G +D + + + +++ Sbjct: 510 ITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRM 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 570 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 628 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 629 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 686 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 687 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 723 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 724 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSADERRAAKAINF--------------G 769 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 770 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 799 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 833 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M ++L Sbjct: 834 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVKVDGWIADHAQRAKMIL 884 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 885 QVHDELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 930 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 111/727 (15%), Positives = 199/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51 + D ET S A QA + + A D ++ Sbjct: 399 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYLPLAHKNGVG 448 Query: 52 ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 L L DE+V+ VA N ++ +L K+ I +K + T Sbjct: 449 DLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDT 505 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 506 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 550 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 551 LVDIDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVD 610 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I G + L LF G+ ++ Sbjct: 611 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 669 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T S+L I++ + + L V + + T ++ T Sbjct: 670 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 729 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 730 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 765 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 766 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 825 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 826 --------------GIIYGISAFGLANQLSIE---------------------------- 843 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 844 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 882 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 883 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 926 Query: 618 T--------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PLK + Sbjct: 927 EPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLKVD 986 Query: 667 GYEAKRY 673 A + Sbjct: 987 ARAATNW 993 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 99/707 (14%), Positives = 183/707 (25%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D ET + P+ A + + A + + + A+ Sbjct: 316 FAFDTETTALDPMK----------ARLVGISLALEPDEAFYIPVGHAYEGAPVQLDRDAV 365 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L + + + N ++ + + G I T + A L Sbjct: 366 LRILAPAFENTKITKIGQNVKYDWTVLSRC-GFKIDG-PVFDTMIAAYLLNPTRRSYGLD 423 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + G + + Y D + Sbjct: 424 RLAADYLNHRMISYQDVTGTGKN---------------AKCFSAVPLEEAIPYAAEDADI 468 Query: 170 TRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L E L + + G +D + + L + + + +K Sbjct: 469 TFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEK 528 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLA 274 L+ +I G + L + LF G+ T +L+ Sbjct: 529 LEGEIY-GLAGETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDADVLTTLADHHEL 587 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + + L+E + GR+ + A+ TGR S QN+P Sbjct: 588 PALLLRHRTLAKLKSTYADALAELILPETGRIHTSFNQT-ATATGRLSSTDPNLQNIP-- 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R + G V AD + +E R+LA + Sbjct: 645 ----------------------IRTEEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + I+AF N EDI+ T ++ F + ++++ R K + Sbjct: 683 QDPILIEAFENDEDIHTRTASEVFQLFPEMITEDVRRQAKAINF--------------GI 728 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + ++ ++ Sbjct: 729 VYGISPF------------------------------GLARDLGISQKMAKNYMDSYFSR 758 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V + Q R D+ Sbjct: 759 YSRVKEFMDKAIADARETGQTRTMF--------------------------GRIRYLPDI 792 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLT 627 T R +Q + DI+ M K ++L+ Sbjct: 793 DSPN---RTLQGYAERAAI------NTPIQGTAADIMKLAMIATEKALAKEKLVSVMLLS 843 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDEIV E P +V L +M A + LK + + Sbjct: 844 VHDEIVLECPPDEVKTVSALVADIMENVCDLA--VRLKVNVAQGSNW 888 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 100/712 (14%), Positives = 198/712 (27%), Gaps = 166/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 ++ +D ET + + + A Sbjct: 338 QIAVDTETDALSSTASG----------LVGISLATAPGRACYIPLAHVDPQGTGDMFDTG 387 Query: 50 --QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +P L L D V+ + N ++ + + GID+ + T +++ Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY-GIDVAP--YDDTMLISYV 444 Query: 103 NGLP---SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K GK I + Y A+ ++ Sbjct: 445 MEAGLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDKVPLDKATLYAAEDADITLRL 504 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W++ AT +++ L ER + + + G ++D D + +L Q Sbjct: 505 WEILKPALVAKKMAT--VYETL------ERPMADVLSKMERVGIKVDPDQLNRLSSDFGQ 556 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT 271 + + + + + + LF G+ ++ T ++L Sbjct: 557 KMMAAEAEAHEAAGRDF-NVASPKQIGEILFGEMGLPGGKKTKTGAWSTDAAVLDQLAAE 615 Query: 272 -QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + ++L ++ D + T A+ TGR S QN+ Sbjct: 616 GHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSSTEPNLQNI 675 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P A +R IA G LV AD + +E R+LA Sbjct: 676 P------------------------IRTEAGRQIREVFIAEPGHVLVAADYSQVELRLLA 711 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA + +AF +G DI+ T ++ F PI+ + R K + Sbjct: 712 HIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAIN-------------- 757 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + + + A+ Sbjct: 758 FGVIYGIS------------------------------AFGLANQIGVKRDEAKAFIDAY 787 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 K G+ ++ A RR + Sbjct: 788 FEKFPGIRAYMDEMKAKAAETGYVETIF--------------------------GRRAHF 821 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624 ++ + R+ +Q + D++ M + Sbjct: 822 PGIRDKNPNMRMFA---ERQAINAP------IQGSAADVIRRAMIRMDDALNAANLDAKM 872 Query: 625 VLTVHDEIVSETPDTPYFSVGTL-CSLMTKN--PSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E P+ + L +M + P+ +PL + + + Sbjct: 873 LLQVHDELVFEVPENQAADLIALTAKVMGEACSPALELSVPLVVDAKAGRTW 924 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 94/691 (13%), Positives = 194/691 (28%), Gaps = 143/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDLL 58 L +D ET P+ A + +++ + E+ + + Sbjct: 364 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 413 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 ++E + V N ++ ++ + GI++ K T V L ++ Sbjct: 414 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGK-LFDTMVAHYVLQPELRHNMDYLAEIY 471 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ + G + K D P + A + E + + Sbjct: 472 LHYQTIHIEELIG--PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAE 529 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E + ++++I L +G + Sbjct: 530 KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEF-NI 586 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 587 ASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLST 646 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 647 YIDALPQLINPKTGRIHTSFNQTV-TATGRLSSSNPNLQNIP------------------ 687 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G AD + IE R++A ++ + I AF +G DI+ Sbjct: 688 ------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDIH 741 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I +V+ + R K G+ + ++ Sbjct: 742 AATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 783 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + Sbjct: 784 --------------------------MNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAR 817 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + + Sbjct: 818 EHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAERN-- 849 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+ P Sbjct: 850 -------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 902 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M K + +PLKA+ + Sbjct: 903 VEQVVIEEMEKA--YRMHVPLKADCGWGTNW 931 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 186/702 (26%), Gaps = 158/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 + D ET S P+ A I +++ + Sbjct: 351 KLMCFDTETTSLDPMT----------AKIVGMSFSVEAGSAAYLPLKHDYFDAPEQLDFV 400 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + V N +++ + GI + T + + + Sbjct: 401 ETLAKIKPILENAAIKKVGQNFKYDQHVLANH-GIALNGIA-HDTMLESYVFESHKTHGM 458 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + ++ EY D + Sbjct: 459 DALAERHLGIQTISFEEVAGKGAKQ---------------VTFNQVTVEVASEYAAEDAD 503 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + + P E + TI G ID D++ I + Sbjct: 504 ITLQLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKL 563 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQL 273 L+ +L + L+ LF GI + T + +L + Sbjct: 564 VALENQAYELAGQPF-NLGSPKQLQEILFDKLGIKPTKKTPSGAPSTDEDVLQELALDHP 622 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 ++L + + L + ++ GR+ + A TGR + QN+P Sbjct: 623 LPKVLLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVA-ITGRLASSDPNLQNIP- 680 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 681 -----------------------VRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHL 717 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ + AFAN EDI+ T A+ F + V EQR KV+ L Y Sbjct: 718 SKDEGMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMS-----AFG 772 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L++++ + F + + ++ + + G + Sbjct: 773 LAQNLNIERGAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWV------- 825 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + G +L Sbjct: 826 --PEINSPNGTRRAGAERAAINAPMQGTAADLI---------------------KLAMIA 862 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 V + +R KL I+Q +VL Sbjct: 863 VD-----------KWLRHEKLQTKL---IMQ-------------VHDE---LVL------ 886 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L LM +PL AE + Sbjct: 887 --EVPDNELELVKQKLPELMQNVAK--LDVPLLAEVGVGSNW 924 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 186/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + + Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHNFPGAPAQLERRQ 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ GI + T + + + Sbjct: 406 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYS-DDTLLQSFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLDDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P + E L + I G +D + + +++ Sbjct: 509 ITLRLHHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M + ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDAWIADHAEHALMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + +G + + M+ +PL + + Sbjct: 884 QVHDELVFEADADFVDTLLGEVTARMSAAAE--LRVPLVVDSGVGDNW 929 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 101/710 (14%), Positives = 203/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + + + Sbjct: 347 YVAVDTETTGLNEMT----------AELVGISLCVEPGTACYIPLIHKAAGSDDLFGSDD 396 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L DE+++ + N ++ +F + + I T +++ Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQ---VGITVAPIDDTMLMSYA 453 Query: 103 NG---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ I ++ PY A+ ++ Sbjct: 454 MHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEAVPYAAEDADVTLRL 513 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ F R ++++ L ER + + + G ++D D + ++ +Q Sbjct: 514 WQQFKPALHRAQVT--KVYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQ 565 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L++++ L + L LF G+ + T +L Sbjct: 566 KMAALEDEVYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDLATE 624 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL+ S + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 684 P------------------------IRSEEGRRIREAFVAEEGKTLVALDYSQIELRILA 719 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA AF +G+DI+ T ++ F+ P+D+++ E R K + Sbjct: 720 HIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN-------------- 765 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + + Sbjct: 766 FGVIYGISGF------------------------------GLARNLRIPRSEAQGFIDRY 795 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ D + RR+ Sbjct: 796 FERFPGIRAYMDDTKAFAKEHGY--------------------------VETLFGRRIHT 829 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 ++ R +Q + D++ M + ++L Sbjct: 830 PNI----GAKGPQAGFAARAAINAP------IQGTAADVIRRAMIRMPAAIAELPAKMLL 879 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E ++ S+M P + L + + + Sbjct: 880 QVHDELLFEVDQGAQDALIEAARSVMESAADPVVHLDVKLTVDAGQGPNW 929 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 105/702 (14%), Positives = 197/702 (28%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 ++ D ET S L +A + ++ W + Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKAATTKLLETFR 410 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 + +E + V N ++ + + I++ T + ++ Sbjct: 411 PFFENEHIGKVGQNLKYDLKVLQNY-NIEVRG-ALFDTMIAHYLLNPDMRHNMDILSETY 468 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN++ + GK R + EY D + T +L Sbjct: 469 LNYTPIAIESLIGKGKAQRSMRTV---------------PLDQVKEYAVEDADVTWQLKN 513 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +D E L + + G +D+ + + + + + +L+ I Sbjct: 514 VFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIA 573 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + L LF ID ++ T + +L+ IL Sbjct: 574 EQA-GENFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILE 632 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L V+ GR+ T A TGR S QN+P Sbjct: 633 WRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVA-ATGRLSSNNPNLQNIP-------- 683 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 VR IA L+ AD + IE R++A ++ E Sbjct: 684 ----------------IRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNM 727 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I +F EDI+ +T AK F+ P+++V++EQR+ K + + G+ Sbjct: 728 IDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVS 773 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 S L + + + + A + + Sbjct: 774 AFGLSAQ------------------------------TNLSRSESKELIDTYYATYPNLR 803 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + RR D+ Sbjct: 804 NYISKQIQFAQEHGYVETVL--------------------------GRRRYLPDIHSRNQ 837 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + A + +Q + DI+ M ++L VHDE+ Sbjct: 838 VVRGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDEL 888 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + P T +V + M + A +PL A+ + Sbjct: 889 VFDVPKTELNTVKPLIKEAMESAFTLA--VPLVADLGVGDNW 928 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 194/706 (27%), Gaps = 169/706 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 +D ET P+ QA + +++++ + T Sbjct: 313 FALDTETTGLDPM----------QASLVGMSFSYEADRAFYAPLTHDYLGAPDQVGVEKA 362 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLK 110 L L + + + N ++ I+ + G D+ + T V + L Sbjct: 363 LEILGPVLSNPEIKKIGQNIKYDWIVLARH-GADLQGVAF-DTMVASYLLNPSHRSHGLD 420 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + Y D + Sbjct: 421 QIAMELLEHRMISYEEVCGKGAK---------------AITFNQVPLEKAVPYACEDADV 465 Query: 170 TRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T +++ L P + E L + + G +D D + L + + Sbjct: 466 TFQIYGLLQPKLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMES 525 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLA 274 +++I +L + L LF G+ T +L+ Sbjct: 526 AEKEIYQLAGEEF-NIASPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHEL 584 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + ++ L + GR+ + + TGR S QN+P Sbjct: 585 PALILRYRSVAKLKSTYVDALQSLIHPETGRVHTSFNQNV-TATGRLSSSNPNLQNIP-- 641 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I G ++ AD + IE R+LA ++ Sbjct: 642 ----------------------IRTPEGKRIREAFIPRKGWEMFCADYSQIELRILAHLS 679 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +++ I+ F +GEDI+ T ++ F + V+ E R K + Sbjct: 680 QDEFLIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINF--------------GI 725 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + S + + + + Sbjct: 726 IYGMGAFRLSNEI------------------------------GVSRKTAQRYIDNYFVT 755 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++GV + ++ + R D+ Sbjct: 756 YKGVKKFIEETIALAHETGMTKTLL--------------------------GRTRPLPDI 789 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 L A R T +Q + D++ M ++LT Sbjct: 790 NAKNRVLMEAA---ERIAT------NTPIQGTAADLIKVAMIKVQNALEEQNMQTKMLLT 840 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E+P F L M + W + LK K + Sbjct: 841 VHDELVFESPPEEIFQAQVLAEQMMEGV-WDLDVALKVNIESGKNW 885 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 101/702 (14%), Positives = 201/702 (28%), Gaps = 166/702 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQ 59 + D ET + L + + A++W+ D++E +A+ + Sbjct: 372 VCFDTETTGLKAL----------EVELVGIAFSWEKGKGYYVAFPEDQSETTAILEEFRP 421 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGL--PSSLKNACL-A 115 + T+ V N ++ + D+P + T + ++ Sbjct: 422 FFESTTIEKVGQNLKYDIKVLSNY---DMPVKGQLFDTMIAHYLINPDMRHNMDVLSETY 478 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN+ GK + + EY D + T +L + Sbjct: 479 LNYQPVSIVELIGKKGKNQLS--------------MRQVPLEQQTEYAVEDADITYQLKE 524 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 I + E L + + G +D D + +L + +A + +L++DI Sbjct: 525 HFIKELESGHLTKLFSDVEVPLVSVLSAMEIEGINLDPDFLGELSKALAVDIDRLEKDIY 584 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILN 280 + + L LF + D ++ T + +LS+ IL Sbjct: 585 EQAGEEF-NIGSPKQLGPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADILE 643 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L ++ R+ A TGR S QN+P Sbjct: 644 WRQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVA-ATGRLSSNNPNLQNIP-------- 694 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 VR + L+ AD + IE R++A ++ ED Sbjct: 695 ----------------IRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSKEDTM 738 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF +G DI+ +T ++ FN P+++V++EQR+ K + + Y D Sbjct: 739 MQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD 793 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 L + + + + + + Sbjct: 794 ---------------------------------------LTRSESKELIDTYYETYPKLK 814 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + RR D+ + Sbjct: 815 AYMSNQVAFARENGYVETVL--------------------------GRRRYLKDINSRNA 848 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + A + +Q + DI+ M N ++L VHDE+ Sbjct: 849 IVRGAAERN---------AVNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDEL 899 Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + + + M +PL E + + Sbjct: 900 VFDAHKDELEIIKPIIKEEMENAFK--MEVPLDVEIGVGQNW 939 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 111/702 (15%), Positives = 189/702 (26%), Gaps = 158/702 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 + +D ET S Q A A + ++A +S Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385 Query: 53 ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLP 106 + + L L D HN ++ + ++ GI++ + +LA P Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIA-ADSMLLAYCLYPAKYP 443 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 SL + LN+ GK + PY C A+ Sbjct: 444 PSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSIATPYACEDADIALRLTGLLS-- 501 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 A RL + E L + I G +D +++ L +L+ Sbjct: 502 -----AQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLRIAELESQ 556 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLIL 279 I + + L + LF I ++ T + +L LIL Sbjct: 557 IHAAAGEKF-NIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVLEKLADEHEVPRLIL 615 Query: 280 NRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + + GR+ + + TGR S QN+P Sbjct: 616 QVRQLAKLKSTYTDALPKLIHRTTGRVHTSFNQA-ITTTGRLSSSDPNLQNIP------- 667 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G L+ AD + IE R++A +G+ Sbjct: 668 -----------------IRSAEGREIRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAAL 710 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 AFANGEDI+ T A ++ VS E R K + G+ Sbjct: 711 CAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAIN--------------FGILYGMS 756 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + + + ++ V Sbjct: 757 ------------------------------AFGLAKQLNISRGEAQTFIDTYFERYPSVR 786 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 D + R I + R Y Sbjct: 787 GFMDDTLVLAREQGYVETLLGHRVYVPE-------------ISSSNGMRRAY-------- 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 R Q + DI+ M + + I+L VHDE+ Sbjct: 826 --------AERTAINAPL------QGSAADIIKVAMIHLHRRLRQEAPAAAIILQVHDEL 871 Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + E P +V + M + + +PL + + Sbjct: 872 IVEAPVDQIDAVSAIMRQTMEQAVT--LEVPLTVDIGSGHSW 911 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 204/700 (29%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE + V N F++ + + GI++ + T + + + Sbjct: 405 LATLKPLLEDEKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLNSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEEAGPYASEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F P++KV+ EQR K + L Y Sbjct: 722 QDEGLLAAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q + L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQES----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 112/693 (16%), Positives = 204/693 (29%), Gaps = 135/693 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-------SAMPSDL 57 D ET + P +A + W ++P + + + L Sbjct: 385 DTETTALNP----------REAELVGIGCCWGNKPTDIAYIPIAHKQGKQLRKEQVFDRL 434 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L V N+ F+R++FK GI++ + T + + L C Sbjct: 435 QSILESNNYPKVFQNTKFDRLIFK-HQGINLDGV-VLDTMLASYVLHPEKSHKLSELCEQ 492 Query: 116 L--NFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K GK D + A+ F E + Sbjct: 493 YLEGITSLDYKDLGIGKKQ------TIADLDIETVAEYCGMDAYATFLLVEPLKNEL-KP 545 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L L + E+ L + + D G ID + + KL + + Q L+E+ + Sbjct: 546 LSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKF 605 Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF ++ T + L D IL S Sbjct: 606 -NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSKL 664 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L E V D R+ + TGR S QN+P Sbjct: 665 KSTYIDALPELVDKIDQRIHTNFNQSV-TATGRLSSSNPNLQNIP--------------- 708 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 S +R I LV AD + IE R+LA ++ E + A+ N + Sbjct: 709 ---------IRTEFSRRIRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNAD 759 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T F+ ++++ ++R +GK + + Y G++ F A + Sbjct: 760 DVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQRFAREA-----GVSAVEGKE 812 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + M+ + ++G Sbjct: 813 FINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRY---------------FNFFDDN 857 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + +I ++ +N SQ Sbjct: 858 LYRFRGHDPQNIDLNKI-----------------------------------NINYNDSQ 882 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642 L+R +Q S DI+ M + +++L VHDE+V E P + Sbjct: 883 LLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLLQVHDELVFEIPHQEWE 936 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M + +PL E K + Sbjct: 937 ELEDKIKETMENAVT--LTVPLVVEINTGKNWM 967 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 104/706 (14%), Positives = 201/706 (28%), Gaps = 158/706 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + ID ET S + QA + + A + + Sbjct: 347 YVAIDTETTSLNEM----------QAELVGISLAVEPGQACYIPLGHREGASDDLFGSDA 396 Query: 52 ----AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +P D L L D V+ + N ++ +F G+ + T +++ Sbjct: 397 LAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFA---GLGLTIAPIDDTMLMSYA 453 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ + ++ Y A+ ++ Sbjct: 454 LNSGIHNHGMDALSERYLAHNPIPIKTLLGTGKSAVTFDKVPIDEAVKYAAEDADITLRL 513 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W +F + T +++ L ER L + + G +D D++ ++ AQ Sbjct: 514 WHMFKPQLHQKQVTT--VYETL------ERPLVPVLARMERHGILVDRDVLSRMSNAFAQ 565 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I +L G + L LF ++ + T +L Sbjct: 566 KMGGLEAEIHELA-GRSFNVGSPKQLGEILFDEMALEGGKKGKTGAYATGADVLEDLATE 624 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + + + GR+ + GAS TGR + QN+ Sbjct: 625 HELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGAS-TGRLASTDPNLQNI 683 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK+LV D + IE R+LA Sbjct: 684 P------------------------VRSEEGRRIREAFVADAGKRLVSLDYSQIELRILA 719 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +AG D +AF +G DI+ T ++ F P+D+++ + R K + + Y Sbjct: 720 HVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYG-----ISG 774 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + FE + ++ + L G Sbjct: 775 FGLARNLRIPRAEAQGFIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHT----- 829 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + Sbjct: 830 ----PEIAAKGPRAGFAKRAAINAPIQ--------------------------------- 852 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 TA + R + D+ C+ + D Sbjct: 853 ----------GTAADIIRRAMIRMPEAI--------ADLPCKMLLQVH-----------D 883 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 E++ E + +V +M A +PL + + Sbjct: 884 ELLFEAEEDAVDAVITAAREVMEGAADPAVHLDVPLTVDAGSGMNW 929 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 102/711 (14%), Positives = 199/711 (27%), Gaps = 167/711 (23%) Query: 1 MSKL------FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---- 50 M +L D ET S + QA + ++A Sbjct: 318 MKRLETAELFAFDTETTSLDYM----------QAQVVGVSFAVKTGEAAYLPLAHDYADA 367 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 L L + H+ ++R + GI++ T + + Sbjct: 368 PQQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIE-HDTMLESYVLN 425 Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + L++ + GK D T Sbjct: 426 STASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQ---IPFSQVRIEDAT------------ 470 Query: 161 EYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L P + E L + + G ++D + + Sbjct: 471 PYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERLFAQ 530 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL 265 +A+ +++ + ++ G + ++ L+ + T + +L Sbjct: 531 SHELAERMGQIEREAHEVAGGAF-NLGSPKQIQEILYERQKLPVLRKTPKGQPSTAEDVL 589 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324 + LIL + S + L E + D GR+ + AS TGR S Sbjct: 590 EQLALDYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVAS-TGRLSSSD 648 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R +A +G++LV AD + I Sbjct: 649 PNLQNIP------------------------IRTEEGRRIRQAFVAPSGRRLVAADYSQI 684 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A ++G+ ++AFA G+DI+ T A+ F +D+VS EQR K + L Y Sbjct: 685 ELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMS 744 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L +++ F + + + +++ + + L G Sbjct: 745 -----AFGLARQLGIERGDAQDYVDRYFARYPGVKDYMESTREKARDLGYVETLFGRRLY 799 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 L + + + +A + + + + R+ I Sbjct: 800 L---------PDINARNGQIRAQAERVAINAPMQGTAADIIKRAMIQVDQWIRESRIP-- 848 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 ++ Sbjct: 849 -------------------------------------------AVMI----LQVHDE--- 858 Query: 624 IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL V + V LC M++ +PL E + Sbjct: 859 LVLEV--------DEDAVDKVREELCVRMSQAAE--LKVPLVVEAGVGDNW 899 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 106/719 (14%), Positives = 202/719 (28%), Gaps = 184/719 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET S + A + + T + Sbjct: 342 YVAVDTETTSLNEMR----------AELVGVSLCVMAGQACYIPLTHKGGAADDLFGDDA 391 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L D++++ + N ++ +FK+ +GI + T +++ Sbjct: 392 LAEGQMDFEDCLAILKPMLEDDSILKIGQNMKYDAKIFKR-VGITVDP--IDDTMLMSYA 448 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 S+ L + K + GK+ I ++ Sbjct: 449 MNAGLNRHSMDVLSEQYLGHTPIPIKPLLGAGKSAITFDRVPVEEAV------------- 495 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLV 206 +Y D + T L++ L P ER L + + G ++D D + Sbjct: 496 ----KYAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTL 551 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLK 262 ++ AQ+ L++++ +L G + + LF G++ T Sbjct: 552 SRMSNAFAQKMAGLEDELYELAGGKF-NVGSPAQVGEILFDQMGLEGGKKGKTGKYATGA 610 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 IL L+L+ S + L ++ GR+ + GA+ TGR S Sbjct: 611 DILEDLATEHGFPGLVLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGAN-TGRLS 669 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA GK LV D Sbjct: 670 STDPNLQNIP------------------------IRTDEGRKIREAFIADEGKVLVALDY 705 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +A D +AF +G DI+ T ++ FN P+D+++ + R K + Sbjct: 706 SQIELRILAHVANIDALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINF---- 761 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A ++ Sbjct: 762 ----------GVIYGISGF------------------------------GLARNLRIPRA 781 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + G+ D + Sbjct: 782 EAQGFIDRYFERFPGIRTYMDDTVAFAKE--------------------------HNRVE 815 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 R++ + + R +Q + D++ M Sbjct: 816 TLFGRKIHTP----EINAKGPGAGFAKRAAINAP------IQGTAADVIRRAMIRMDAAI 865 Query: 621 ---GYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + +M P +PL + + Sbjct: 866 AHLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVMENAANPVVKFDVPLVVDAGIGATW 924 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 100/706 (14%), Positives = 195/706 (27%), Gaps = 171/706 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 ID ET + + A + + A+D Sbjct: 348 HFAIDTETTNLD-------YRIA---ELVGFSVAFDAHDAYYVPVAHDYEGAPEQLNREH 397 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + L +E V + H+ ++ +F GI I + T + + + Sbjct: 398 VLEQIKPILENEQVKKIGHHLKYDAHIFANH-GITIQGW-YFDTMLASYVLNAAATRHGM 455 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 456 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIELEVAAHYAAEDAH 500 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L E + + + + G ++D + +L ++ Sbjct: 501 VTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETM 560 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +L G + + LF G+ + T +SIL Sbjct: 561 QTLENQATELA-GEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKIEHP-- 617 Query: 274 AKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 ++IL + + L E S R+ + + TGR S QN+P Sbjct: 618 LAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQA-LTATGRLSSTDPNLQNIP- 675 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G+ L+ AD + IE R++A Sbjct: 676 -----------------------IRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHF 712 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + +D + AF G+D++ T A+ I+ V+ +QR K + Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNF--------------G 758 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFTREESRSYIARYFQ 788 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + + + RRL D Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628 + + + A R Q + DI+ M K+ ++L V Sbjct: 823 ILANNKMIKQAA---ERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E +T + + +M +P E + + + Sbjct: 874 HDELVFEADETITDELSKQIAEVMQSVLD--ISVPFVVEVGQGQNW 917 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 205/705 (29%), Gaps = 166/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMP 54 ++ +D ET S P+ A + + A+ + Sbjct: 354 QIGLDTETTSLDPM----------NARLVGISMAFAAGEAVYIPINHTFAEQQLSWETLL 403 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNA 112 L YL +T++ + N +++ +F GI + + + L L Sbjct: 404 GSLKPYLESKTLLKIGQNLKYDQHVFANH-GIQLQGIA-GDAMLASYVLESHLGHGLDEL 461 Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + + + EY +D + Sbjct: 462 AQRWLGLETITYESLCGKGAKQ---------------ISFADVSVEQATEYACQDADFAL 506 Query: 172 ELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + L + E + + + G ID + + + E KL++ Sbjct: 507 RIEAHLKAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLKLEQ 566 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKD 276 L + L+ LF GI + + T +++L + Sbjct: 567 QAYDLAGQPF-NLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYPLPK 625 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +IL + + + L E ++ + R+ A TGR + QN+P Sbjct: 626 IILQNRSLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVA-ITGRLASNNPNLQNIP---- 680 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR IA +V AD + IE R++A ++G+ Sbjct: 681 --------------------IRTSEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGD 720 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I+AF NGED++ T A+ F + ++ EQR K + Sbjct: 721 ATLIEAFKNGEDVHRRTAAEVFGMQPENITPEQRRYAKTIN--------------FGLIY 766 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ ++++ + ++ K + A++ Sbjct: 767 GMSSYGLAKSLGIDNAS------------------------------ADMFIKRYFARYT 796 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + E A + + RRL D+ Sbjct: 797 GVADYMQRTKEQAADLGY--------------------------VETLFGRRLYLPDIHA 830 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629 + A + R +Q + D++ M + + VH Sbjct: 831 KNA---QARAGAERAAINAP------MQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVH 881 Query: 630 DEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P + V + +LM +PL AE K + Sbjct: 882 DELVLEVPKSEQERIVQNIPALMASVGKGVLDVPLVAEVGIGKNW 926 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 112/729 (15%), Positives = 200/729 (27%), Gaps = 190/729 (26%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---------VKLWDRTE---- 49 + D ET S QA I + A D Sbjct: 400 IVAFDTETTSLD----------VMQAEIVGFSLAIADNKNDPSGASIRAAYVPLNHKNGV 449 Query: 50 ---------QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + +P L L D +V+ +A N ++ +L K+ GI+ + Sbjct: 450 GDLLGGGLADNQIPLRDALPRLKALLEDTSVLKIAQNLKYDYLLMKRY-GIETKG--FDD 506 Query: 96 TSVLARTNG----LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +L+ + + L K G Sbjct: 507 TMLLSYVLDGGANATHGMDSLSERWLGHKPIAYKDVAGSG---------------KSNIT 551 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYR 200 + Y D + T L+ L P ER L + + +RG Sbjct: 552 FDLVDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGIT 611 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 ID ++ +L +AQ +L+++I G + L LF G+ ++ Sbjct: 612 IDRQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTG 670 Query: 259 --GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L I++ + + L V + + T ++ Sbjct: 671 QWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLAST 730 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R+ I++ G K Sbjct: 731 TTGRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHK 766 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE RVLA +A +AFA+G DI+ T ++ F PI+ + E R K + Sbjct: 767 LISADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAI 826 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ + + Sbjct: 827 NF--------------GIIYGISAFGLANQLSIE-------------------------- 846 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + K + + G+ + Sbjct: 847 ----RSEAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIF----------------- 885 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR+ + +++ + R +Q + D++ M Sbjct: 886 ---------GRRVHFPEIRSSNPSVRAF---NERASINAP------IQGSAADVIRRAMI 927 Query: 616 NATKNGY--------DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLK 664 ++L VHDE++ E D S + S+M P+ +PLK Sbjct: 928 KMEPALADAGLGDRVRMLLQVHDELIFEVEDADVERSTPVIVSVMENAAMPAVNMSVPLK 987 Query: 665 AEGYEAKRY 673 + A + Sbjct: 988 VDARAANNW 996 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 94/691 (13%), Positives = 194/691 (28%), Gaps = 143/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDLL 58 L +D ET P+ A + +++ + E+ + + Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFE 419 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 ++E + V N ++ ++ + GI++ K T V L ++ Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGK-LFDTMVAHYVLQPELRHNMDYLAEIY 477 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ + G + K D P + A + E + + Sbjct: 478 LHYQTIHIEELIG--PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAE 535 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E + ++++I L +G + Sbjct: 536 KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEF-NI 592 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 593 ASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLST 652 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 653 YIDALPQLINPKTGRIHTSFNQTV-TATGRLSSSNPNLQNIP------------------ 693 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G AD + IE R++A ++ + I AF +G DI+ Sbjct: 694 ------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDIH 747 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I +V+ + R K G+ + ++ Sbjct: 748 AATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 789 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + Sbjct: 790 --------------------------MNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAR 823 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + + Sbjct: 824 EHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAERN-- 855 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+ P Sbjct: 856 -------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 908 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M K + +PLKA+ + Sbjct: 909 VEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 191/695 (27%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI + T + + + + Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170 L + GK + QL Y + EA Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R D E + L+ + + G ID L+ IA +L+ +L G Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L L+L S Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ GR+ A TGR + QN+P Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IAS G ++V AD + IE R++A I+G+ ++AFA G Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F +V+ +QR I KV+ G+ Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 A + A +L + ++ GV Q +D Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTR 795 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 796 TAAKDKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M +++ VHDE+V E PD Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDD 880 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M +PL AE + Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 ID ET S PL QA + + + + + Sbjct: 340 SIDTETTSLVPL----------QAQLVGISLCCEPGVAAYIPVAHRYADAPVQLSRELVL 389 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + +L D V N ++ +F GI + T + + + + Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIA-HDTMLESYVFESHRSHDMDSL 447 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + + GK EY D + T Sbjct: 448 ALRHLGRTTITFQEVCGKGASQ---------------ICFDQVDIARATEYAAEDADITL 492 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + ++P E ++ Q I G ID ++ + + ++ Sbjct: 493 QLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLEI 552 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L + + F + + T + +L+ Sbjct: 553 ETSAYELAGQPF-NLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTDEEVLAKLAEDYPLPK 611 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L + S + L + + GR+ A TGR + QN+P Sbjct: 612 VLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVA-VTGRLASNEPNLQNIP---- 666 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G +V AD + IE R++A ++G+ Sbjct: 667 --------------------IRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGD 706 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AFA+G DI+ T A+ F+T V+ EQR KV+ L Y Sbjct: 707 ANMLRAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMS-----AFGLAG 761 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L +++ + F + + + + + + G L Sbjct: 762 NLGIERGAAQSYIDKYFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWL---------P 812 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G Sbjct: 813 EINSPNGPRRQGAERAAINAPMQGT----------------------------------- 837 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 KL+ VQ +V+ VHDE+V E Sbjct: 838 ---------------AADLIKLSMVAVQG---------WLETDGLKSLMVMQVHDELVLE 873 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P V L +LM +PL AE K + Sbjct: 874 VPQEELELVRVKLPALMAGVAE--LKVPLTAEVGIGKNW 910 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGISFAVAPGEAAYLPLAHDYLDSPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GI++ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F TP++KV+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q + L G L R Sbjct: 777 ARQLSIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 191/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + + Sbjct: 345 SFDTETTSLDPMV----------AQIVGISLSTEPGSAAYIPVAHRGPDAPEQLPRDEVL 394 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + I + T + + + + Sbjct: 395 AKLKPWLESAERRKVGQHLKYDAQVLANYE-IALNGIE-HDTLLESYVLESHRTHDMDSL 452 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + Y D + T Sbjct: 453 ALRHLGVKTIKYEEVAGKGAQQIG---------------FDEVPLETAAAYAAEDADITL 497 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + P + E + L+ + + G ID + K IA +L Sbjct: 498 QLHLAMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIEL 557 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + + +L G + + F + + T + +L Sbjct: 558 EREAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 616 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L ++ GR+ A TGR + QN+P Sbjct: 617 LLLEHRGLSKLKSTYTDKLPRMINARTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 671 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+ + Sbjct: 672 --------------------VRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISED 711 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AF+ GEDI+ T A+ F +VS +QR I KV+ Sbjct: 712 ESLLRAFSQGEDIHRATAAEVFGVTPLEVSNDQRRIAKVIN--------------FGLIY 757 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A +L + A++ Sbjct: 758 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 787 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + RRL ++ G Sbjct: 788 GVANYMETTRAVAKDKGYVETVF--------------------------GRRLWLPEING 821 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 A R +Q + D++ M K +++ VH Sbjct: 822 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDGWLERDKLRSRMIMQVH 872 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P+ V L +M+ +PL AE + Sbjct: 873 DELVLEVPEDELALVREKLPEMMSGVAK--LKVPLVAEVGAGDNW 915 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 94/694 (13%), Positives = 191/694 (27%), Gaps = 149/694 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58 L +D ET P+ A + +++ + + + Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFE 419 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +++ + V N ++ ++ + GI+I R T V L ++ Sbjct: 420 SVFKNDKSLKVGQNIKYDMLVLQNY-GIEIRG-RLFDTMVAHYVLQPELRHNMDYLAEIY 477 Query: 116 LNFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L++ + G K D Y C A+ + E + +A Sbjct: 478 LHYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE-- 535 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L + E L + I G R+D + + + E + ++++I L Sbjct: 536 ---KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEF 590 Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I + ++ T + +L IL Sbjct: 591 -NIASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKKL 649 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 650 LSTYIDALPQLINPRTGRIHTSFNQTV-TATGRLSSSNPNLQNIP--------------- 693 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I +G AD + IE R++A ++ + I AF +G Sbjct: 694 ---------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSGY 744 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T AK + I +V+ + R K G+ + ++ Sbjct: 745 DIHAATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER- 789 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + V + Sbjct: 790 -----------------------------MNVDRKEAKELIDGYFETYPQVKAYMDKSIQ 820 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ D+ + + + Sbjct: 821 VAREHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAER 854 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 +Q + DI+ M + ++L VHDE+ P Sbjct: 855 N---------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKE 905 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M K + +PLKA+ + Sbjct: 906 KEIVEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 98/703 (13%), Positives = 190/703 (27%), Gaps = 165/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57 L +D ET S + +A + ++A ++ + + + Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 D ++ V N ++ + + G+++ T + L ++ Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVAG-PMFDTMIAHYLLQPELRHNMDYMAEV 455 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + + G + + + + Y EY D + T L Sbjct: 456 YLGYRTVHIEELIGPRGRNQKNMRDLSPTDIY---------------EYACEDADITLRL 500 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P D E L + + G +D + + + E+ + +++ Sbjct: 501 KNVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQH 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I D ++ T + +L D I Sbjct: 561 IYELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEI 619 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 LN ++ L + ++ GR+ + + TGR S QN+P Sbjct: 620 LNYRGLKKLLSTYVDALPKLINPRTGRIHTSFNQTV-TATGRLSSSDPNLQNIP------ 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C I G AD + IE R++A ++ ++ Sbjct: 673 ------------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDEN 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF G DI+ T A+ ++ I +V+ +R K G+ Sbjct: 715 MIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANF--------------GIIYGI 760 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A + + + + V Sbjct: 761 ------------------------------TTYGLAQRMDISNGEARDLIDGYFLTFPRV 790 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + E RR D+ Sbjct: 791 EAYMEQAKETARKQGYAETLFH--------------------------RRRYLPDINSHN 824 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + T R +Q DI+ M + ++L VHDE Sbjct: 825 A---TVRGFAERNAINAP------IQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDE 875 Query: 632 IVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M + +PL A+ K + Sbjct: 876 LNFSVFPEEKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 199/703 (28%), Gaps = 161/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 +D ET + + A + ++A ++ E++ Sbjct: 356 KLFALDTETNNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + L L + + V N ++ +F + GID+ + T + + ++ Sbjct: 406 TALALLKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 464 DDLAKRYLGHQTITFEEIAGKGKNQL---------------TFNQIPLEKAAEYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L + E L + + RG ID D + IA Sbjct: 509 VTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRL 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 +L+E L + T L+ LF G+ + T + +L + Sbjct: 569 SELEEQAYVLAGQPF-NLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+ GR+ + + TGR S QN+P Sbjct: 628 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 686 -----------------------IRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AF G+DI+ +T A+ F +D+V+ EQR K + L Y Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMS-----AFG 777 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + F+ + ++ ++++ + L G L Sbjct: 778 LSRQLGIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYL------- 830 Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + +A + + + + Sbjct: 831 --PDINSSNGMRRKAAERVAINAPMQGTAADIIKRAMIQLDQ------------------ 870 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 KL + DI M + VHDE Sbjct: 871 ------------------------KLQNDP------DI---AMI----------MQVHDE 887 Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 +V E L M +PL + + + Sbjct: 888 LVFEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 203/709 (28%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRDWV 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 411 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Q +Y D + Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 514 TLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ PI++VS EQR K + Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 836 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887 Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V + + LM A +PL AE + Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 203/709 (28%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + + Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDREWV 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 411 ITQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Q +Y D + Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 514 TLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ PI++VS EQR K + Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 836 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887 Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V + + LM A +PL AE + Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 112/705 (15%), Positives = 192/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A + +++ + + + Sbjct: 343 AFDTETTSLDPML----------ARLVGLSFSVESGKAAYLPVAHRGPDMPEQLPLDEVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + I + T + + + + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVVESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALTQAAEYAAEDADITL 495 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID + IA +L Sbjct: 496 QLHHALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIEL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 556 EAQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 755 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A +L + A++ Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q +D RRL ++ G Sbjct: 786 GVAQYMEDTRSVAKEKGYVETVF--------------------------GRRLWLPEING 819 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 A R +Q + D++ M K +++ VH Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDKLASRMIMQVH 870 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L +M +PL AE + Sbjct: 871 DELVLEVPDGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 196/691 (28%), Gaps = 142/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ +A + +++ + + + Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + G + K D PP D R A + E ++ + Sbjct: 488 LRYRTIHIDELIGSR--GKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAE 545 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + I G RID + + + E ++++++I L +G + Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNI 603 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 604 ASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYRGLKKLLST 663 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 664 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 704 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++ + I AF +G DI+ Sbjct: 705 ------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDAFLSGYDIH 758 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I +V+ + R K G+ + ++ Sbjct: 759 AATAAKIYKVDISEVTTDMRRKAKTANF--------------GIIYGISVFGLAER---- 800 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + + + + Sbjct: 801 --------------------------MNVSRQEAKELIDGYFETYPQIKEYMDKSIQVAR 834 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + R Sbjct: 835 ENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---ER 865 Query: 590 ERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+ P+ Sbjct: 866 NAINAP------IQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKEI 919 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M + +PLKA+ K + Sbjct: 920 IQKIVIEEMERAYRML--VPLKADFGWGKNW 948 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 201/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGFSFAVAPGEAAYLPVAHDYLDAPTQLDRNWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE + V N F++ + + I++ + T + + + Sbjct: 405 LAQLKPLLEDEKALKVGQNLKFDQSMLARY-DIELRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++KV+ +QR K + L Y Sbjct: 722 QDQGLLTAFAAGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 93/702 (13%), Positives = 192/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDLL 58 +D ET P+ A + ++++ + + + L Sbjct: 383 FFSLDTETTGTDPIT----------AELVGMSFSFAENQAFYVPVPANREEALAIVKKLK 432 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 + +E + + N ++ ++ G+++ T + L + Sbjct: 433 PIIENEKTLKIGQNIKYDMLVLGNY-GVEVRG-PMFDTMIAHYVLQPELHHGMDYLAEVY 490 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + + Y Y D + T +L Sbjct: 491 LKYETIKIEELIGPKGKNQKNMRDLSPTSVYK---------------YACEDADVTLKLK 535 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 K L E L + + G RID + + + + K+L+E++ Sbjct: 536 KVLEKELIENNVNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEV 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279 +L + + LF I ++ T + +L IL Sbjct: 596 HQLAGMEF-NIASPKQVGEVLFDRLKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKIL 654 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L ++ G + + + TGR S QN+P Sbjct: 655 EHRGLKKLLGTYIDALPLLINPKTGHIHTSFNQTV-TATGRLSSSNPNLQNIP------- 706 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I G + AD + IE R++A ++G+ Sbjct: 707 -----------------IRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHM 749 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF G+DI+ T AK + ++ V++EQR+ K G+ Sbjct: 750 IEAFQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANF--------------GIIYGIS 795 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ + + + + + V Sbjct: 796 VFGLAERLNIE------------------------------RKEAKELIDGYFENYPHVK 825 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + I R+ D+ + Sbjct: 826 EYMDQSIRLAQEKGY--------------------------IETIFKRKRYLPDINSRNA 859 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + + +Q + DI+ M K ++L VHDE+ Sbjct: 860 VVRGYAERN---------AINAPIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDEL 910 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S M + +PL+A+ K + Sbjct: 911 NFSVVPEEKEKVQHIVISEMEAA--YKMKVPLQADCDWGKNW 950 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 200/703 (28%), Gaps = 161/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 +D ET + + A + ++A ++ E++ Sbjct: 356 KLFALDTETDNLDYMA----------ANLVGISFALENGEAAYLPLQLDYLGAPKTLEKT 405 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + L L + T+ V N ++ +F + GID+ + T + + ++ Sbjct: 406 TALTLLKPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 464 DDLAKRYLGHQTISFEEIAGKGKNQL---------------TFNQIQLEQAAEYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L + E L + + RG ID D + IA Sbjct: 509 VTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRL 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 +L+E L + T L+ LF G+ + T + +L + Sbjct: 569 SELEEQAYVLAGQPF-NLASTKQLQEILFDKLGLPVIQKTPKGAPSTNEEVLEELAFSHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L + V+ GR+ + + TGR S QN+P Sbjct: 628 LPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +V AD + IE R++A + Sbjct: 686 -----------------------IRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AF G+DI+ +T A+ F +D+V+ EQR K + L Y Sbjct: 723 SQDQGLINAFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMS-----AFG 777 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + F+ + ++ ++++ + L G L Sbjct: 778 LSRQLSIGRADAQSYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYL------- 830 Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + +A + + + + Sbjct: 831 --PDINSSNGMRRKAAERVAINAPMQGTAADIIKRAMIQLDQ------------------ 870 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 KL + DI M + VHDE Sbjct: 871 ------------------------KLQNDP------DI---AMI----------MQVHDE 887 Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 +V E L M +PL + + + Sbjct: 888 LVFEVRSEKVEFYSKLIKTHMESAADLV--VPLIVDVGQGTNW 928 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 196/701 (27%), Gaps = 161/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQS--AMPSDLLQ 59 D ET PL A + A++ A+ ++ Sbjct: 397 FCFDTETDGLDPL----------SARMLGIAFSIAPHEGCYFHIPEERDEHLAVLKEVKT 446 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 +L + HN F+ +F GI++ + T ++ + L Sbjct: 447 FLSTSKAEKIGHNLKFDLRVFLAH-GIEVAG-PFFDTMLVHALVEPDQRHGMDYLSERYL 504 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +S G+ ++ + EY D + T +L ++ Sbjct: 505 GYSPVSITTLIGEKK------------GATPQKSMAEVPLEPLAEYAAEDADVTLQLSQK 552 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G ++D+ + + + + + L E I Sbjct: 553 LRPELERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVLRERIQG 612 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 D + L LF + + + T + L D IL Sbjct: 613 YVDWPF-NLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPIIDDILAY 671 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ L AV+ R+ T A TGR + QN+P Sbjct: 672 RECTKLKSTYVDALPAAVNPLTHRVHTTFHQLMA-ATGRMASTDPNLQNIP--------- 721 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G L+ AD + IE RV+A ++ + + Sbjct: 722 ---------------IRTDQGREIRKAFVPEKEGWVLMSADYSQIELRVMAELSADPAMM 766 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G DI+ T AK + +D+V E R K++ + Y L Sbjct: 767 EAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYG-----ISAFGLSQRLGN 821 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 T + + + ++ GV + Sbjct: 822 T--------------------------------------SRTEAAQIIENYFKQYPGVKR 843 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 +D+ RR D+ Sbjct: 844 YMEDIVTQARTQGYVETLT--------------------------GRRRYLRDINSSNMT 877 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 + +AT R +Q + D++ M N ++ ++L VHDE++ Sbjct: 878 VRSAT---ERVAMNAP------IQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELL 928 Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E P V + M + +P+ E K + Sbjct: 929 FEVPLEEVDKVKPVIEQGMREALP--LKVPVLVEAGTGKTW 967 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 110/707 (15%), Positives = 199/707 (28%), Gaps = 161/707 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 354 KIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 404 VLDRLKPHLENSALKKIGQNLKYDQHVFANY-GIALNGI-VGDAMLASYIIESHLGHGLD 461 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + D Sbjct: 462 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDK 521 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 522 QLEM--------YEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAA 573 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T + +L +IL Sbjct: 574 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKN 632 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S D R+ T A TGR +G QN+P Sbjct: 633 RSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVA-ITGRLAGNNPNLQNIP--------- 682 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 683 ---------------IRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + G+ Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIYGMGQY 773 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A + + + + A++ GV + Sbjct: 774 ------------------------------GLAKSLGIDNLSAKNFIDRYFARYPGVAEY 803 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E ++ RRL D++ + + Sbjct: 804 MQRARECA--------------------------AGQGYVETLFGRRLYLPDIRHTNANI 837 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------------NGYDIVLT 627 ++ R +Q + D++ M + ++ +++ Sbjct: 838 R---ARAERAAINAP------MQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQ 888 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ V L +M +PL AE + Sbjct: 889 VHDELVLEVPEAELDLVKEKLPQMMAAVDDGMLDVPLAAEVGAGMNW 935 >gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] Length = 952 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 191/694 (27%), Gaps = 148/694 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ +A + +++ + + +L Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENRAYYVPVPANRDEALKIVNELR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LNFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + G K + D Y C A+ + E + Sbjct: 488 LQYQTIHIDELIGARGKNQKNMRDLPAEDVYRYACEDADV-----TLKLKNVLEKELKEQ 542 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + L + E L + I G RID + + + E ++++++I L G Sbjct: 543 SAEHLF--YEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALAGGET 600 Query: 233 RSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I T + +L IL Sbjct: 601 FNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILEYRGLKKL 660 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 661 LSTYIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP--------------- 704 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I +G + AD + IE R++A ++ + I AF +G Sbjct: 705 ---------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAFLSGY 755 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T AK + I+ V+ + R K G+ + ++ Sbjct: 756 DIHAATAAKIYKVDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER- 800 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + V + + Sbjct: 801 -----------------------------MNVPRQEAKELIDGYFETYPQVKEYMDRSIQ 831 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ D+ + + Sbjct: 832 VARENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA-- 863 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ M + ++L VHDE+ P+ Sbjct: 864 -ERNAINAP------IQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSVPEAE 916 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M + +PLKA+ K + Sbjct: 917 KEIIQKIVIEEMERAYRML--VPLKADCGWGKNW 948 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 200/702 (28%), Gaps = 165/702 (23%) Query: 21 VWAYAEQAVITLCAYAWDDE---------PVKLWDRTE------------------QSAM 53 A +A + + A D Sbjct: 415 TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPGRET 474 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 S L + L D +V+ V N + ++ K+ I + + T +++ + Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531 Query: 111 NACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166 + L + K G + + Y A+ ++ W + Sbjct: 532 SLAERWLGHTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +++RL ER L + + +RG +D ++ +L +AQ L+++I + Sbjct: 592 GLT--RVYERL------ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYR 643 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDLILN 280 L L LF G+ ++ T +L L + ++ Sbjct: 644 LAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + + L V + + T A+ TGR S QN+P Sbjct: 703 RQ-LTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIP--------- 752 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ +A+ G KLV AD + IE RVLA +A + Sbjct: 753 ---------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA+G DI+ T ++ F P+D + E R K + G+ Sbjct: 798 AFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINF--------------GIIYGISAF 843 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + K + + G+ Sbjct: 844 GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ RR Y D++ + Sbjct: 874 MENTKAFARENGYVETIF--------------------------GRRAHYPDIRSSNPSM 907 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634 R +Q + DI+ M K ++L VHDE++ Sbjct: 908 RAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 E D ++ + S+M A +PLK + A + Sbjct: 959 EVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] Length = 952 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 98/691 (14%), Positives = 194/691 (28%), Gaps = 142/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ +A + +++ + + + Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPANRDEALKIVNEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ G + K D PP D R A + E + Sbjct: 488 LHYQTIHIDELIG--AKGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAE 545 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + I G RID + + + E ++++++I L G + Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNI 603 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 604 GSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYRGLKKLLST 663 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 664 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 704 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++ + I AF +G DI+ Sbjct: 705 ------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMIDAFLSGYDIH 758 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I+ V+ + R K G+ + ++ Sbjct: 759 AATAAKIYKVDINDVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 800 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + + Sbjct: 801 --------------------------MNVPRQEAKELIDGYFETYPQVKEYMDRSIQVAR 834 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + R Sbjct: 835 ENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---ER 865 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+ P+ Sbjct: 866 NAINAP------IQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKEI 919 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M + +PLKA+ K + Sbjct: 920 IQKIVIEEMERAYRML--VPLKADFGWGKNW 948 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 116/728 (15%), Positives = 201/728 (27%), Gaps = 181/728 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L +D ET A + + A Sbjct: 369 FLAVDTETTGLN----------ASAVDLVGISMAIAPGQACYIPLRHGATNDSAVGSGVA 418 Query: 51 ---------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 +++ D V+ + HN ++ + + I Sbjct: 419 VQGGLNFSDDDTPAHYPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGIN 478 Query: 90 SKRWICTSVLARTNG----LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPP 144 T L+ S+ L+++ GK Sbjct: 479 LAPVDDTMCLSYVLDGGRVERHSMDYLAGHWLDYTTIKFSDVCGKGAKQ----------- 527 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTI 194 A + +Y D + T L+ L P ER L + + Sbjct: 528 ----IPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQM 583 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 + G +D ++ ++ A + L +DI+ L + L LF G+ Sbjct: 584 ENYGITVDRSILARMSNDFATRMEALAQDILALAGEDF-NIASPKQLGEILFDKMGLQGG 642 Query: 255 DMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 ++ T +L +L+ + + L E + GR+ + Sbjct: 643 KKAKTGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTS 702 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 GAS TGR S QN+P +R+ Sbjct: 703 FSMVGAS-TGRLSSSDPNVQNIP------------------------IRTSEGRQIRTAF 737 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA+ G KL+ D + IE R++A +AGE I+AF +G DI+ T ++ F P+D++ E Sbjct: 738 IAAEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSET 797 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + Q S FE++ ++ ++ + Sbjct: 798 RRRAKAINFGIIYG-----ISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTE 852 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 E + L G + R Sbjct: 853 AREDGFVETLFGRRIH--------------------------------ITGMAGGSAAHR 880 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 R + I +A + R QA D Sbjct: 881 GFAERQAINAPIQ-------------------GSAADIIKRAMIRIPPAL----QA--AD 915 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMT--KNPSWAKGLPLKA 665 I D++L VHDE++ E P +V + +M P +PL A Sbjct: 916 I-----------RADMLLQVHDELIFEAPAADADNAVKHITRIMEAAAAPVVDLKVPLVA 964 Query: 666 EGYEAKRY 673 E A + Sbjct: 965 EAGIADSW 972 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 200/703 (28%), Gaps = 161/703 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S L A + ++A + Sbjct: 351 FAFDTETDSLDTLT----------ANLVGVSFAISAGDAAYLPLGHDYLGAPEQLDREVV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108 + L L D ++ + N F+R + + GI++ + T + + Sbjct: 401 LAALKPLLEDSNLLKIGQNIKFDRGVLARY-GIELQGIAY-DTMLESYVLNSVAGMGRHD 458 Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN + GK + A + Y D Sbjct: 459 MDSLAERHLNHKTTTFEEIAGKGKNQL---------------TFNQVAVEQAAMYAAEDA 503 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + + P + E L ++ + G ID +++ + + I Sbjct: 504 DVTLLLHQAMWPQLEKAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITAR 563 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 +L+++ +L G + + L+ LF + +V + T + +L T Sbjct: 564 LDELEKEAHELA-GEVFNLASPKQLQTILFEKLQLPVVKKTPNGAPSTNEEVLEELADTH 622 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +IL + + L + V R+ + + TGR S QN+P Sbjct: 623 ALPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAV-TATGRLSSRDPNLQNIP 681 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G +++ AD + IE R++A Sbjct: 682 ------------------------VRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMAH 717 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + +KAFA G+DI+ T A+ F P+++V+ EQR K + L Y Sbjct: 718 LSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMS-----AF 772 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + FE + ++ + Q E + L G L R Sbjct: 773 GLSRQLGIPRGEAQRYMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSR 832 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + K +G + + A + + Sbjct: 833 NAMRR-----KAAEREAINAPMQGTAADIIKKAMIAVDDWIVSEEPK------------- 874 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 I+Q +V VH Sbjct: 875 --------------------------VRMIMQ-------------VHDE---LVFEVH-- 890 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + LM K+ +PLK + + Sbjct: 891 ------ESELEYAEQKIRELMEKSM--VLDVPLKVDVGIGDNW 925 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 191/695 (27%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI + T + + + + Sbjct: 393 ARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170 L + GK + QL Y + EA Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R D E + L+ + + G ID L+ IA +L+ +L G Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L L+L S Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ GR+ A TGR + QN+P Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IAS G ++V AD + IE R++A I+G+ ++AFA G Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F +V+ +QR I KV+ G+ Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 A + A +L + ++ GV Q +D Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTR 795 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 796 TTAKEKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M +++ VHDE+V E PD Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDD 880 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M +PL AE + Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F ++KV+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 100/708 (14%), Positives = 187/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + ++ Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQ 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ G+ + T + + + Sbjct: 406 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E L + I G +D + + +++ Sbjct: 509 ITLRLHRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E V GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M N ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIANHAQRAKMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 884 QVHDELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLVVDSGVGDNW 929 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F ++KV+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 98/703 (13%), Positives = 190/703 (27%), Gaps = 165/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57 L +D ET S + +A + ++A ++ + + + Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 D ++ V N ++ + + G+++ T + L ++ Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVL-RHYGVEVAG-PMFDTMIAHYLLQPELRHNMDYMAEV 455 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + + G + + + + Y EY D + T L Sbjct: 456 YLGYRTVHIEELIGPRGRNQKNMRDLSPTDIY---------------EYACEDADITLRL 500 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P D E L + + G +D + + + E+ + +++ Sbjct: 501 KNVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQH 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I D ++ T + +L D I Sbjct: 561 IYELA-GEQFNISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEI 619 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 LN ++ L + ++ GR+ + + TGR S QN+P Sbjct: 620 LNYRGLKKLLSTYVDALPKLINPRTGRIHTSFNQTV-TATGRLSSSDPNLQNIP------ 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C I G AD + IE R++A ++ ++ Sbjct: 673 ------------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDEN 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF G DI+ T A+ ++ I +V+ +R K G+ Sbjct: 715 MIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANF--------------GIIYGI 760 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A + + + + V Sbjct: 761 ------------------------------TTYGLAQRMDISNGEARDLIDGYFLTFPRV 790 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + E RR D+ Sbjct: 791 EAYMEQAKETARKQGYAETLFH--------------------------RRRYLPDINSHN 824 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + T R +Q DI+ M + ++L VHDE Sbjct: 825 A---TVRGFAERNAINAP------IQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDE 875 Query: 632 IVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M + +PL A+ K + Sbjct: 876 LNFSVFPEEKEQVERIVVEEMQGA--YKLRVPLVADAGWGKNW 916 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 104/710 (14%), Positives = 201/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + + + Sbjct: 347 YVAVDTETTGLNDMT----------ADLVGVSLCVEPGKACYIPLIHKAASSDDLFGSDD 396 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L DE+++ + N ++ +F + + I T +++ Sbjct: 397 LAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQ---VGITVAPIDDTMLMSYA 453 Query: 103 NG---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ I D+ PY A+ ++ Sbjct: 454 MHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDAVPYAAEDADVTLRL 513 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ F R +++ L ER + + + G ++D D + ++ +Q Sbjct: 514 WQQFKPALHRAQVT--RVYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQ 565 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+++I L + L LF G+ + T +L Sbjct: 566 KMAALEDEIYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDLATE 624 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL+ S + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 684 P------------------------IRSEEGRRIREAFVAEEGKTLVALDYSQIELRILA 719 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA AF +G+DI+ T ++ F+ P+D+++ E R K + Sbjct: 720 HIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAIN-------------- 765 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + + Sbjct: 766 FGVIYGISGF------------------------------GLARNLRIPRSEAQGFIDRY 795 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ D + RR+ Sbjct: 796 FERFPGIRTYMDDTKAFAKEHGY--------------------------VETLFGRRIHT 829 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 ++ R +Q + D++ M ++L Sbjct: 830 PNI----GAKGPQAGFAARAAINAP------IQGTAADVIRRAMIRMPAAIVDLPAKMLL 879 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E ++ S+M P + L + E + Sbjct: 880 QVHDELLFEVDQGSQGALIDAARSVMESAADPVVHLDVKLTVDAGEGPNW 929 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 196/691 (28%), Gaps = 142/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 L ID ET +P+ +A + +++ + + + Sbjct: 380 ILSIDTETTGTEPM----------EAELVGMSFSNAENRAYYVPVPANRDEALKIVNEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E M V N ++ I+ + G+ + K T + L ++ Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK-LFDTMLAHYVLQPELRHNMDYLAEIY 487 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + G + K D PP D R A + E ++ + Sbjct: 488 LRYRTIHIDELIGSR--GKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAE 545 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + I G RID + + + E ++++++I L +G + Sbjct: 546 HLF--YEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNI 603 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 604 ASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYRGLKKLLST 663 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 664 YIDALPQLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP------------------ 704 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++ + I AF +G DI+ Sbjct: 705 ------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDAFLSGYDIH 758 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I +V+ + R K G+ + ++ Sbjct: 759 AATAAKIYKVDISEVTTDMRRKAKTANF--------------GIIYGISVFGLAER---- 800 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + + + + Sbjct: 801 --------------------------MNVSRQEAKELIDGYFETYPQIKEYMDKSIQVAR 834 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + R Sbjct: 835 ENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---ER 865 Query: 590 ERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+ P+ Sbjct: 866 NAINAP------IQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKEI 919 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M + +PLKA+ K + Sbjct: 920 IQKIVIEEMERAYRML--VPLKADFGWGKNW 948 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 194/700 (27%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A ++ + Sbjct: 346 FAFDTETDSLDYMV----------ANLVGVSFAVEEGKAAYVPVAHDYLDAPEQLDRDWV 395 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D + N ++ + + GI++ ++ T + + + Sbjct: 396 LAQLKPLLEDPNQAKIGQNLKYDASVIARY-GIEMQGIKY-DTMLESYVYNSVVGRHDMD 453 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + + G Y D + Sbjct: 454 SLALRYLEHKNISFEEIAGKGKGQL---------------TFNQIDLEQAGPYAAEDADI 498 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L P D E L + + G ID + + IAQ Sbjct: 499 TLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDSMKLSAQSQEIAQRLD 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ ++ D + L+ LF G+ + T + +L + Sbjct: 559 ELEKRAFEIADQEF-NLSSPKQLQAILFEKMGLPVLKKTPSGTPSTNEEVLQELALDYPL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL + + L + V+ GR+ + + TGR S QN+P Sbjct: 618 PKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G K++ D + IE R++A ++ Sbjct: 675 ----------------------VRNDEGRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLS 712 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G+DI+ T A+ P+D+VS EQR K + L Y Sbjct: 713 GDKALLDAFCHGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMS-----AFGL 767 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + FE + + + E + L G L R Sbjct: 768 AKQLDMGRGEAQEYMNTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNG 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A V + S R + V Sbjct: 828 LRR-----KAAERAAINAPMQGTAADIIKRAMVLVDEWIGQQE-------SGRVRLLMQV 875 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + ++ + V Sbjct: 876 HDELVFE------------------------------------VQESEIESVAQ------ 893 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +LM +PL A+ + + Sbjct: 894 ------------EIKTLMESAAQ--LDVPLIADIGYGENW 919 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 202/702 (28%), Gaps = 165/702 (23%) Query: 21 VWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS------------------AM 53 A +A + + A D +S Sbjct: 415 TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVREA 474 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 S L + L D +V+ V N + ++ K+ I + + T +++ + Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531 Query: 111 NACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166 + L + K G + + Y A+ ++ W + Sbjct: 532 SLAERWLGHTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +++RL ER L + + +RG +D ++ +L +AQ L+++I + Sbjct: 592 GLT--RVYERL------ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYR 643 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDLILN 280 L L LF G+ ++ T +L L + ++ Sbjct: 644 LAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + + L V + + T A+ TGR S QN+P Sbjct: 703 RQ-LTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIP--------- 752 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ +A+ G KLV AD + IE RVLA +A + Sbjct: 753 ---------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA+G DI+ T ++ F P+D + E R K + G+ Sbjct: 798 AFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINF--------------GIIYGISAF 843 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + K + + G+ Sbjct: 844 GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ RR Y D++ + Sbjct: 874 MENTKAFARENGYVETIF--------------------------GRRAHYPDIRSSNPSM 907 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634 R +Q + DI+ M K ++L VHDE++ Sbjct: 908 RAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 E D ++ + S+M A +PLK + A + Sbjct: 959 EVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 93/691 (13%), Positives = 193/691 (27%), Gaps = 143/691 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58 L +D ET P+ A + +++ + + + + Sbjct: 370 ILALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAERKEAIKIVREFE 419 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 ++E + V N ++ ++ + GI++ K T V L ++ Sbjct: 420 PVFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGK-LFDTMVAHYVLQPELRHNMDYLAEIY 477 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ + G + K D P + A + E + + Sbjct: 478 LHYQTIHIEELIG--PKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAE 535 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E + ++++I L +G + Sbjct: 536 KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEF-NI 592 Query: 236 RQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + LF I + ++ T + +L IL Sbjct: 593 ASPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYRGLKKLLST 652 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 653 YIDALPQLINPKTGRIHTSFNQTV-TATGRLSSSNPNLQNIP------------------ 693 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G AD + IE R++A ++ + I AF +G DI+ Sbjct: 694 ------IRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDIH 747 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T AK + I +V+ + R K G+ + ++ Sbjct: 748 AATAAKIYKVDIKEVTADMRRKAKTANF--------------GIIYGISVFGLAER---- 789 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + V + Sbjct: 790 --------------------------MNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAR 823 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R+ D+ + + + Sbjct: 824 EHGYVETIFH--------------------------RKRFLPDINSRNAVVRGYAERN-- 855 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+ P Sbjct: 856 -------AINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 908 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M K + +PLKA+ + Sbjct: 909 VEQVVIEEMEKA--YRMHVPLKADCGWGTNW 937 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 189/696 (27%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57 L +D ET S A +A + +++ + + + Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E ++ V N ++ + + GI++ T + L ++ Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY-GIELKG-NLFDTMIAHYLLQPELRHNMDYMAEV 455 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G KG + EY D + T +L Sbjct: 456 YLRYQTVHIEELIGPR-----GKGQKNMRDLAPND---------IYEYACEDADITLQLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G RID + ++ E + L+ I Sbjct: 502 NILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 +L G + + LF I + ++ T + L LIL Sbjct: 562 HQLA-GESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQFVTSEEELQKYATGNEIVTLIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L + ++ G + + + TGR S QN+P Sbjct: 621 DYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTV-TATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G +R C I +G AD + IE RV+A ++G+ Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF G DI+ T AK + + V++++R K + Y L Sbjct: 716 IEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITV-----FGLAERLG 770 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + F + Q +S+ +D E + R + Sbjct: 771 IDRGEAKQLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFFHR---------RRYLPDIN 821 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + Sbjct: 822 SQNATVRGFAERNA----------------------------------------INAPIQ 841 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 ++ R Y EN +Q ++L VHDE+ Sbjct: 842 GSAADIIKVAMIRIYERFKREN-IQ------------------SKMILQVHDELNFSVLP 882 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M + +PL A+ + Sbjct: 883 SEKEQVERIVLEEMQNA--YQLKVPLVADAGWGHNW 916 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 105/694 (15%), Positives = 192/694 (27%), Gaps = 144/694 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S PL A I + A + Sbjct: 344 ALDTETTSLDPLA----------ARIVGISLAVAPGEAAYLPLAHDYPGVPAQLPCDEVL 393 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SS 108 + L +L + + +++ + GI + R T + + Sbjct: 394 ARLKSWLESPGHAKIGQHLKYDQHVLANH-GIALAGVR-HDTLLQSYVLESGKDGVRGHD 451 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L + + GK F + +I + Y + Sbjct: 452 LGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQAAEYAAEDADLCQRLHAVLYPQIV 511 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +A ++ E + + + +G ID +L+ + I + L+ Sbjct: 512 ADAGLA-----RVYAEIEIPVRDILFRMERQGVLIDGELLTRQSHEIGKRLLDLEARAHA 566 Query: 227 LTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + L LF G+ + T + +LS + ++L Sbjct: 567 AAGQPF-NVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEVLSELALDYPLPKILLESR 625 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L + V++ GR+ + A TGR + QN+P Sbjct: 626 QLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVA-VTGRLASSDPNLQNIP---------- 674 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R+ IA G LV AD + IE R++A ++ + ++A Sbjct: 675 --------------VRTAEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEA 720 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 FA GED++ T A+ F V +QR + KV+ L Y LDL++ Sbjct: 721 FAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMS-----AFGLARELDLER 775 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + F + + ++ + + G L + Sbjct: 776 GAAQAYIERYFARYPGVARYMATTREAARTQGYVETVFGRRLWL---------PEIRSSQ 826 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 +G +N Sbjct: 827 AGRRQGAERA-----------------------------------------------AIN 839 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 K VQ +A + +++ VHDE+V E PD Sbjct: 840 APMQG---SAADLIKSAMIAVQG---------WLDAERLQTRLLMQVHDELVLEVPDDEL 887 Query: 642 FSVG-TLCSLMTKNPSWA-KGLPLKAEGYEAKRY 673 V L LMT +A +PL + + Sbjct: 888 ARVRGELPRLMT---DFASLRVPLVVDVGVGANW 918 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 107/727 (14%), Positives = 199/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQ---- 50 + D ET S A QA + + A D + Sbjct: 418 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467 Query: 51 --------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + L L DE+++ VA N ++ +L K+ I ++ + T Sbjct: 468 DLLGGGLAENQIPMGDALARLKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDT 524 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 525 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 569 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 570 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 629 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I + G + L LF G+ ++ Sbjct: 630 RQILSRLSGELAQSAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLSGGSKTKTGQW 688 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L I++ + + L V + + T ++ T Sbjct: 689 STSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 748 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 749 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 784 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 785 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 844 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 845 --------------GIIYGISAFGLANQLSIE---------------------------- 862 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 863 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 901 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 902 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 945 Query: 618 TKN--------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PL+ + Sbjct: 946 EPALVEVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVD 1005 Query: 667 GYEAKRY 673 A + Sbjct: 1006 ARAATNW 1012 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 112/721 (15%), Positives = 197/721 (27%), Gaps = 171/721 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ----------- 50 + +D ET S P A + AW + P + Sbjct: 418 VALDTETTSLNPFR----------AELVGVGVAWGEGPADLAYIPIGHRVGSSGETPDLL 467 Query: 51 ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 + + L +L N+ ++R++ + G+ + + T + Sbjct: 468 SPPPAQLPLDQVLTALAPWLGSAQHPKALQNAKYDRLILLRH-GLPLEGV-VMDTLLADY 525 Query: 102 T--NGLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L+ F K + Sbjct: 526 LRDANAKHGLELLAQRNFGFLPTSYSELVPKG------------------ADFSAVPIEQ 567 Query: 159 FGEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLV 206 YC DV TR L L + E L + + G RID + Sbjct: 568 AALYCGMDVHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYL 627 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTL 261 +L + Q ++L+ D + L LF G+D T Sbjct: 628 AELSSELGQTLQRLEADAKAAAGTDF-NLASPKQLGELLFDTLGLDRKKSRKTKTGWSTD 686 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 ++L L+L S ++ L + GR+ + TGR Sbjct: 687 AAVLEKLEDAHPVVSLVLEHRTLSKLKSTYVDALPALMEPETGRVHTDFNQAV-TATGRL 745 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P S +R + G +L+ AD Sbjct: 746 SSSNPNLQNIP------------------------IRTEFSRRIRKAFLPEAGWQLISAD 781 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA ++GE+ ++A+ G+D++ T D+VS ++R +GK + + Sbjct: 782 YSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVI 839 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y GA+ F + Q + + + + + + + ++G Sbjct: 840 YGMGAQRF-----ARETGVSQTQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILG 894 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 L K + I Sbjct: 895 RRRPFAFD-------------------------------------PSGLGRHLGKDPLEI 917 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619 L +RR +Q +R +Q S DI+ M Sbjct: 918 DLDIARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQ 958 Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E +V TL M + +PL E + Sbjct: 959 LAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE--LSVPLLVETGVGPNW 1016 Query: 674 R 674 Sbjct: 1017 M 1017 >gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] Length = 941 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 95/686 (13%), Positives = 195/686 (28%), Gaps = 131/686 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DL 57 L ID ET S +P+ +A + +++ + E+ + Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPAEREEALKIVNEF 418 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +ET M V N ++ ++ + G+++ + T + L ++ Sbjct: 419 RPLYENETSMKVGQNIKYDILVLQNY-GMEVKGE-LFDTMIAHYVLQPELRHNMDYLAEI 476 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L++ G + K D PP + + A + E ++ Sbjct: 477 YLHYQTIHIDELIGPR--GKNQKNMRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGV 534 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E L + + G RID + + + E ++++++I +L + Sbjct: 535 EHLF--YEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKEIYELA-EETFN 591 Query: 235 SRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + LF I ++ T + +L IL Sbjct: 592 IASPKQVGEILFDKLKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKILEYRGLKKLLG 651 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L ++ GR+ + + TGR S QN+P Sbjct: 652 TYIDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP----------------- 693 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I +G + AD + IE R++A ++ + I AF +G DI Sbjct: 694 -------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGYDI 746 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T AK + I V+ + R K + Y +++ + Sbjct: 747 HAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYG-----ISIFGLAERMNVDRKEAKELI 801 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 FE + Q + E + + L + + Sbjct: 802 DGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFL---------PDINSRNATVRGYA 852 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + ++ Sbjct: 853 ERNA----------------------------------------INAPIQGSAADIIKVA 872 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R Y + N+ ++L VHDE+ P+ V + Sbjct: 873 MARIYKRFQSNNL-------------------KAKMILQVHDELNFSVPEAEKEFVQQIV 913 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + + +PL+A+ K + Sbjct: 914 IEEMERA--YRMHVPLRADCGWGKNW 937 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 137/694 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-------SAMPSDL 57 D ET P QA + W + P + + + L Sbjct: 385 DTETTDLNP----------RQANLVGIGCCWGNNPTDIAYIPIGHKQGKQLKKEQVLDSL 434 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L V N+ F+R++FK I++ T + + L C Sbjct: 435 RTILESSDYPKVFQNTKFDRLIFK-HQAINLDGV-VFDTMLASYVLHPEKSHKLSELCEQ 492 Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-- 171 + E G + D + A+ F E + Sbjct: 493 YLEGITCQNY-DELGISKKQ----TIADLDIEKVAEYCGMDAYGTFLLVEPLKNELQQVP 547 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + L + E+ L + + D G ID + + KL + + QE L++ + Sbjct: 548 TLEQLL---LEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYDAAEEK 604 Query: 232 IRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF ++ T + L D IL S Sbjct: 605 F-NLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPIIDYILEYRTLSK 663 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L E V+ R+ + TGR S QN+P Sbjct: 664 LKSTYIDALPELVNKKTKRIHTNFNQSV-TATGRLSSSNPNLQNIP-------------- 708 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I LV AD + IE R+LA ++ E + A+ N Sbjct: 709 ----------IRTEFSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQESVLLNAYQNA 758 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 ED++ T F ++++ ++R +GK + + Y G++ F A + Sbjct: 759 EDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYGMGSQRFAREA-----GVSATEGK 811 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + M+ + ++G Sbjct: 812 EFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGRRRY---------------FNFFDD 856 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + + +I ++ +N S Sbjct: 857 NLYRFRGHDPQTIDLNKL-----------------------------------NINYNDS 881 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641 QL+R +Q S DI+ M + +++L VHDE+V E P+ + Sbjct: 882 QLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQVHDELVFEIPEKEW 935 Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M +PL E + K + Sbjct: 936 EELNHKIKETMENAVK--LTIPLVVEIHAGKNWM 967 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F +P++KV+ EQR K + L Y Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L R Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S + LM ++ A +PLK + + Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 111/721 (15%), Positives = 201/721 (27%), Gaps = 186/721 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58 D ET S P+ QA + + A L Sbjct: 380 FFAFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHFEGKEDLLKGGRI 429 Query: 59 --------------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 L D V+ + N ++ ++ K+ DI + + T +L+ Sbjct: 430 ASQIETRKALALLKPLLEDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALD 486 Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L ++ + L K GK + + + Sbjct: 487 AGALTHNMDDLSERWLEHKPIAYKDLTHNGKKITSF-----------------AQVDLKQ 529 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L++ L P +R L + + +RG +D ++L+ Sbjct: 530 ATLYAAEDADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLR 589 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264 L +AQ L+E+I K D + L LF G+ ++ T Sbjct: 590 LSGELAQAALILEEEIYKQADEKF-NLASPKQLGDILFDKMGLPGGAKTKGGQWSTSAQT 648 Query: 265 LSHS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 L L + +I R + + L + GR+ + TGR S Sbjct: 649 LEELSAEGHTLPRKIIEWRQ-LAKLKSTYADALPSYILPKTGRVHTNYSLA-ITSTGRLS 706 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R+ IA G L+ AD Sbjct: 707 SSEPNLQNIP------------------------VRTAEGRKIRTAFIAPKGHVLLSADY 742 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA IA +AFA G DI+ T ++ F I+ + + R K + Sbjct: 743 SQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINF---- 798 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A + + Sbjct: 799 ----------GIIYGIS------------------------------AFGLANQLGISRQ 818 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + G+ + Sbjct: 819 EAGRYIQLYFERFPGIKDYMEKTKSFARENGYVETIF----------------------- 855 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 RR+ Y ++K + + R +Q + DI+ M Sbjct: 856 ---GRRIHYPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMEDAL 903 Query: 621 -----GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E P+ ++ + +M P + +PL+ + A+ Sbjct: 904 KEENLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVMENATMPVLSLSVPLEVKVMTAQN 963 Query: 673 Y 673 + Sbjct: 964 W 964 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 98/709 (13%), Positives = 197/709 (27%), Gaps = 159/709 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49 ID ET + A + ++A Sbjct: 358 KHFVIDTETTDVN----------WQHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWI-CTSVLARTNGL- 105 + + + L L++ + + + ++ + I++ W T + + Sbjct: 408 REDVLAQLKPILQNPQIGKIGQHLKYDAHILANYH-INLINEPSNWAMDTMLASYVINAV 466 Query: 106 --PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + L+ + GK + D + +QLF + Sbjct: 467 ATRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKVPLTVASDYACEDADITYQLFELF 526 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 ++A K L + E + + + G ++ + +L ++ + L+ Sbjct: 527 S-EKLKAEPNNAKLLH---ELEIPVAQILCQMEHDGILLNKAFLGELSARFDEKIQALET 582 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278 G + L LF GI ++ T +++L+ + + + + Sbjct: 583 VAFAQA-GETFNLASPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATIDHPLI--ETV 639 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + S + L+ S+ R+ + + TGR S QN+P Sbjct: 640 LEHRSLSKLKSTYTDALANVADSNDRVHTSYHQA-LTTTGRLSSTEPNLQNIP------- 691 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G+K++ AD + IE R++A A + Sbjct: 692 -----------------IRTDTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVL 734 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF G DI+ T A+ D V+ E+R K + G+ Sbjct: 735 IRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVN--------------FGLLYGMS 780 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + K + A++ V Sbjct: 781 EF------------------------------GLAKQLGFTRQQAQDYIKLYFARYPTVR 810 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + I R+L D++ Sbjct: 811 AYMQATRTAAQNQGY--------------------------ITTILGRKLFTPDMQHPNR 844 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVS 634 + A R Q + DI+ M + ++L VHDE+V Sbjct: 845 GVRQAA---ERAAINAPL------QGSAADIIKLAMIAVNEVLPTEHAKMLLQVHDELVF 895 Query: 635 ETPDTPYFSVGT-LCSLMTKNPS-------WAKG--LPLKAEGYEAKRY 673 E + ++ + + M + S W +PL E + Sbjct: 896 EADEDKAEAIAELIKNAMQEVLSKTAKDKGWDVDFAVPLVVEVGIGDNW 944 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + TE + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E + V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + I G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + Y +++ + Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + + D + + G L + + Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y +ENI ++L VHDE+ V + Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+A+ + Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 96/690 (13%), Positives = 184/690 (26%), Gaps = 143/690 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59 D ET S L +A + A ++ + T + L Sbjct: 376 FCFDTETTSLNAL----------EAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQP 425 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 ++ V N ++ ++ KK I T + + L Sbjct: 426 AFEKSSITKVGQNLKYDLLVLKKY-NFAIAG-PLFDTMLAHYLLEPEMRHGMDTLAEVYL 483 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ + GK + D A F Y + Sbjct: 484 NYTPVSIEQLIGKKGAKQGTM--RDVEIEAIKEYAAEDADITFQLYKFFSPLVKDQNLNP 541 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E L + + G +ID + + L+ E ++++I + + Sbjct: 542 LFN--EVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHAGVQF-NIS 598 Query: 237 QTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + T + +L+ + IL+ Sbjct: 599 SPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANILDYREFQKLKSTY 658 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + DGR+ + A TGR S QN+P Sbjct: 659 VDALPLLLGKDGRVHTSFNQAVA-ATGRLSSTNPNLQNIP-------------------- 697 Query: 352 TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A + ++ AD + IE R++A + ++ + AF G DI+ Sbjct: 698 ----IRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAFRKGVDIHS 753 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 TT +K F PI+ V+ + R K++ G+ SQ + Sbjct: 754 TTASKVFKVPIEDVTADMRRKAKMVNF--------------GIIYGISAFGLSQRLS--- 796 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + A+ + V Sbjct: 797 ---------------------------IPRKEAAEIITAYFTEFPAVKAYMDACVNSARE 829 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 V + RR D+ + R Sbjct: 830 VEYVETIL--------------------------GRRRFLRDINSRNMTMRGFA---ERN 860 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644 +Q + D++ M +VL VHDE++ + + Sbjct: 861 AINAP------IQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDAHKDEIDLL 914 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 T + M + A +P++ + + Sbjct: 915 KTQVEIFMKEAI--ALDVPMEVGMGIGENW 942 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 108/726 (14%), Positives = 198/726 (27%), Gaps = 184/726 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET S A A + ++A ++ + Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402 Query: 54 ------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 S L L + + + N ++ +F GI++ Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461 Query: 90 SKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + T + + T ++ + L + GK Sbjct: 462 GVAF-DTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL------------ 508 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIN 195 EY D + T +L + L + E L + I Sbjct: 509 ---TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIE 565 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G ID +L I + ++++ + + T L+ LF G+ Sbjct: 566 RNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTF-NLASTKQLQEILFEKLGLPVLK 624 Query: 253 -LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 + T + +L L L++ S + L + ++ GR+ + Sbjct: 625 KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSY 684 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 685 NQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFV 719 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G K+V AD + IE R++A ++ ++ I AFA G+DI+ T A+ F + +V+ EQR Sbjct: 720 AREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQR 779 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + L Y + L + + F+ + + +++ Sbjct: 780 RSAKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVA 834 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 E + L G L + L + + +A + V Sbjct: 835 VEKGYVETLFGRRLYL---------PDIKSGNAILRKAAERVAINAPMQGTAADIIKVAM 885 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + RD D Sbjct: 886 IGIDNAIRDN-------------------------------------------------D 896 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + M VHDE+V E L M K S +PL AE Sbjct: 897 EIKMIM------------QVHDELVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAEV 942 Query: 668 YEAKRY 673 + + Sbjct: 943 GVGENW 948 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 110/713 (15%), Positives = 197/713 (27%), Gaps = 163/713 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ----------- 50 + +D ET P A + W +E + Sbjct: 387 VALDTETTDLNPFK----------AELVGIGVCWGEELDALAYIPLGHNGSADSQPVQLP 436 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPS 107 + + L +L E N+ F+R++ + G+ + I T + Sbjct: 437 LETVVTALAPWLGSEDHPKALQNAKFDRLILMRH-GLALDGV-VIDTLLADYLRDAAAKH 494 Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L+ F GK + +YC D Sbjct: 495 GLELMAEREFGFQPTAYSDLVGKKQ------------------TFADVPLEAASQYCAMD 536 Query: 167 VEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 V TR L L E+ L + + G RID+ + +L + Sbjct: 537 VHVTRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMG 596 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSN 269 ++L+ + + + L LF G+D T ++L Sbjct: 597 TTLERLETEAKEAAGVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLG 655 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+L S ++ L + V + GR+ + TGR S Q Sbjct: 656 DDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 714 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P S +R + G L+ AD + IE R+ Sbjct: 715 NIP------------------------VRTEYSRRIRKAFLPQAGWTLLSADYSQIELRI 750 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 L ++GE+ +A+ +G+D++ T D+VS ++R +GK + + Y GA+ F Sbjct: 751 LTHLSGEEVLQEAYRSGDDVHALTARLL--LDKDEVSADERRLGKTINFGVIYGMGAQRF 808 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + Q + + + + + + + ++G Sbjct: 809 -----ARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFD 863 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 L K + I L +RR Sbjct: 864 R-------------------------------------NGLGRLLGKEPLEIDLDVARR- 885 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 +Q +R +Q S DI+ M Sbjct: 886 ------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAALTSQGLPA 927 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + + M +PL AE + Sbjct: 928 RLLLQVHDELVLEVEPDALETTRDMVVRTMENAVK--LTVPLVAETGVGANWM 978 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 108/726 (14%), Positives = 198/726 (27%), Gaps = 184/726 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET S A A + ++A ++ + Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402 Query: 54 ------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 S L L + + + N ++ +F GI++ Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461 Query: 90 SKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + T + + T ++ + L + GK Sbjct: 462 GVAF-DTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL------------ 508 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIN 195 EY D + T +L + L + E L + I Sbjct: 509 ---TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIE 565 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G ID +L I + ++++ + + T L+ LF G+ Sbjct: 566 RNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTF-NLASTKQLQEILFEKLGLPVLK 624 Query: 253 -LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 + T + +L L L++ S + L + ++ GR+ + Sbjct: 625 KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSY 684 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 685 NQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFV 719 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G K+V AD + IE R++A ++ ++ I AFA G+DI+ T A+ F + +V+ EQR Sbjct: 720 AREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQR 779 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + L Y + L + + F+ + + +++ Sbjct: 780 RSAKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVA 834 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 E + L G L + L + + +A + V Sbjct: 835 VEKGYVETLFGRRLYL---------PDIKSGNAILRKAAERVAINAPMQGTAADIIKVAM 885 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + RD D Sbjct: 886 IGIDNAIRDN-------------------------------------------------D 896 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + M VHDE+V E L M K S +PL AE Sbjct: 897 EIKMIM------------QVHDELVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAEV 942 Query: 668 YEAKRY 673 + + Sbjct: 943 GVGENW 948 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 202/709 (28%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + A + ++A + + Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSFAVAEGEAAYIPVAHDYLDAPQQLDRAWV 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 411 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Q +Y D + Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 514 TLRLHQRISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 573 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ PI++VS EQR K + Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 836 --EITSRNGIRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887 Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V + + LM A +PL AE + Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 108/700 (15%), Positives = 205/700 (29%), Gaps = 163/700 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + D ET PL A + A++W+ E A+ +L Sbjct: 379 VCFDTETTGLDPLV----------AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRP 428 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + + + N ++ + K + + K T + ++ L Sbjct: 429 FFEHTGIEKIGQNLKYDIKVLAKY-DVKVKGK-LFDTMLAHYLINPDMRHNMDVLAETYL 486 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ GK + ++ EY D + T +L + Sbjct: 487 NYTPVSITELIGKKGKNQ--------------KSMRDVPLDQQTEYAVEDADITLQLKQH 532 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 D E L + + G +D++ + L + + ++L +I + Sbjct: 533 FEKELDEAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYE 592 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNR 281 + L LF + D ++ T + +LS+ +L+ Sbjct: 593 EAGEEFK-ISSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDY 651 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S ++ L E V+ DGR+ A TGR S QN+P Sbjct: 652 RGLSKLKSTYVDALPEQVAQDGRVHTDYMQTVA-ATGRLSSNNPNLQNIP---------- 700 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR + L+ AD + IE R++A ++ E+ I+ Sbjct: 701 --------------IRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQ 746 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GEDI+ +T AK FN P+++V++EQR+ K + + Y D Sbjct: 747 AFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTD-- 799 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 L + + + + + Sbjct: 800 -------------------------------------LSRGEAKELIDNYYKSYPKLRNY 822 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 +L + + RR + + + Sbjct: 823 MSELVDFARENGYVKTVLD--------------------------RRRYLNGINSSNGVV 856 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 A + +Q + DI+ M N + ++L VHDE+V Sbjct: 857 RGAAERN---------AVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVF 907 Query: 635 ETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + P+ + L M A +PL E + + Sbjct: 908 DVPNIELDDIKNLIKTEMESAFKMA--VPLDVEVGVGQNW 945 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 109/713 (15%), Positives = 195/713 (27%), Gaps = 163/713 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQ----------- 50 + D ET P A + W + + + + Sbjct: 392 VAFDTETTDLNPFR----------AELVGIGICWGETLDALAYIPLGHKGNEDSSPEQLP 441 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + + L +L N+ ++R++ + G+ + I T + Sbjct: 442 LETVLTALAPWLASSNHPKTLQNAKYDRLILLRH-GVALEGV-VIDTLLADYLRDAAAKH 499 Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L+ F GK + YC D Sbjct: 500 GLELMAEREFGFQPTAFTDLVGKKQ------------------TFADVPLEPASLYCGMD 541 Query: 167 VEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 V TR L L + E+ L + + G RID+ + L E + Sbjct: 542 VHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMG 601 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSN 269 ++L+ D + L LF G+D T ++L Sbjct: 602 STLQQLESDAKAAAGVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLG 660 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+L S ++ L + V + GR+ + TGR S Q Sbjct: 661 NDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQ 719 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P S +R + G L+ AD + IE R+ Sbjct: 720 NIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQIELRI 755 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 L ++GE+ +A+ +G+D++ T + +VS ++R +GK + + Y GA+ F Sbjct: 756 LTHLSGEEVLQEAYRSGDDVHALTARLLLDKN--EVSPDERRLGKTINFGVIYGMGAQRF 813 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + Q + + + + + + ++G Sbjct: 814 -----ARETGVSQSEAKEFLARYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFD 868 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 L K + I L +RR Sbjct: 869 R-------------------------------------NGLGRLLGKAPLEIDLNVARR- 890 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 +Q +R +Q S DI+ M Sbjct: 891 ------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALQRQGLPA 932 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + L M + A +PL E + Sbjct: 933 QLLLQVHDELVLEVAPNALDATRELVVQTMEQAV--ALSVPLVVETGVGANWM 983 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 119/701 (16%), Positives = 206/701 (29%), Gaps = 154/701 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAMPSD-----L 57 D ET P A + AW +EP + +P L Sbjct: 371 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 420 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 L + N+ F+R++ + GI++ T + + SL Sbjct: 421 RPILESDRHPKALQNAKFDRLIL-RHQGIELAGV-VFDTMLASYLLNPSLGHSLDALADR 478 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L K + A +YC DV + L Sbjct: 479 WLKLQTRSYSDLVPKG------------------KTIAQVAIAAVAQYCGSDVHVVQRLI 520 Query: 175 KRLI------PLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P E L + + DRG RID + +L E + E +L+ Sbjct: 521 PLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEG- 579 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLI 278 G + L LF G+++ T ++L DLI Sbjct: 580 AAHTLAGDRFNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLI 639 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + ++ L V++DGR+ + TGR S QN+P Sbjct: 640 LEHRTLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIP------- 691 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 S +R + G L AD + IE R+LA ++ E Sbjct: 692 -----------------IRTEFSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 734 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++A+ G+D++ T + F ++++ E+R IGK++ + Y GA+ F Sbjct: 735 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 787 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 ++ + + ++ ++ Q + ++G + Sbjct: 788 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFDFED--------- 838 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 L R I L R + Sbjct: 839 ----------------------------TGLQKLRGSDPESIDLDKIRPSRF-------- 862 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVS 634 +QL+R +Q S DI+ M ++L VHDE+V Sbjct: 863 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 911 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E P + S+ + M + +PL E + + Sbjct: 912 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 950 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F +P++KV+ EQR K + L Y Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L R Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S + LM ++ A +PLK + + Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 109/702 (15%), Positives = 202/702 (28%), Gaps = 165/702 (23%) Query: 21 VWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS------------------AM 53 A +A + + A D +S Sbjct: 415 TSPDAMRADLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPVRET 474 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 S L + L D +V+ V N + ++ K+ I + + T +++ + Sbjct: 475 LSRLKELLEDPSVLKVGQNLKYGYLVMKRH---GIAMRSFDDTMLMSYVLDAGNGAHGMD 531 Query: 111 NACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166 + L + K G + + Y A+ ++ W + Sbjct: 532 SLAERWLGHTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAK 591 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +++RL ER L + + +RG +D ++ +L +AQ L+++I + Sbjct: 592 GLT--RVYERL------ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYR 643 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDLILN 280 L L LF G+ ++ T +L L + ++ Sbjct: 644 LAGETFT-IGSPKQLGDILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDW 702 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + + L V + + T A+ TGR S QN+P Sbjct: 703 RQ-LTKLKSTYTDALPGFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIP--------- 752 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ +A+ G KLV AD + IE RVLA +A + Sbjct: 753 ---------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQ 797 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA+G DI+ T ++ F P+D + E R K + G+ Sbjct: 798 AFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINF--------------GIIYGISAF 843 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + K + + G+ Sbjct: 844 GLANQLSIE------------------------------RSEAGDYIKRYFERFPGIRDY 873 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ RR Y D++ + Sbjct: 874 MENTKAFARENGYVETIF--------------------------GRRAHYPDIRSSNPSM 907 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634 R +Q + DI+ M K ++L VHDE++ Sbjct: 908 RAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIF 958 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 E D ++ + S+M A +PLK + A + Sbjct: 959 EVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F +P++KV+ EQR K + L Y Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L R Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S + LM ++ A +PLK + + Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 108/726 (14%), Positives = 198/726 (27%), Gaps = 184/726 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET S A A + ++A ++ + Sbjct: 353 RLIAVDTETDSLD----------AMSANLVGISFALENGEACYIPLGHKQKAQPQQADMF 402 Query: 54 ------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 S L L + + + N ++ +F GI++ Sbjct: 403 GDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQ 461 Query: 90 SKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + T + + T ++ + L + GK Sbjct: 462 GVAF-DTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL------------ 508 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTIN 195 EY D + T +L + L + E L + I Sbjct: 509 ---TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIE 565 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G ID +L I + ++++ + + T L+ LF G+ Sbjct: 566 RNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTF-NLASTKQLQEILFEKLGLPVLK 624 Query: 253 -LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 + T + +L L L++ S + L + ++ GR+ + Sbjct: 625 KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHTSY 684 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 685 NQAV-TATGRLSSSDPNLQNIP------------------------IRNEEGRRIRQAFV 719 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G K+V AD + IE R++A ++ ++ I AFA G+DI+ T A+ F + +V+ EQR Sbjct: 720 AREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQR 779 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + L Y + L + + F+ + + +++ Sbjct: 780 RSAKAINFGLIYGMS-----SFGLSNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVA 834 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 E + L G L + L + + +A + V Sbjct: 835 VEKGYVETLFGRRLYL---------PDIKSGNAILRKAAERVAINAPMQGTAADIIKVAM 885 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + RD D Sbjct: 886 IGIDNAIRDN-------------------------------------------------D 896 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + M VHDE+V E L M K S +PL AE Sbjct: 897 EIKMIM------------QVHDELVFEVKADKIDHYSQLIKTEMEKAIS--LKVPLIAEV 942 Query: 668 YEAKRY 673 + + Sbjct: 943 GVGENW 948 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 101/710 (14%), Positives = 179/710 (25%), Gaps = 175/710 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------- 50 +D ET PL + + A Q Sbjct: 345 AVDTETDGLDPLTAP----------LVGISLAPQCGRACYIPLGHQVDLMDSLGTPQMPV 394 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--- 107 L D +V+ V N+ F+ ++ + + T +++ Sbjct: 395 GTALEILEPLFADPSVLKVFQNAKFDLLVLTQAG--SVQPAPIDDTMLISYAQSAGQHGQ 452 Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L+ S G Y D Sbjct: 453 GMDELSRLTLDHSPIPYDEVTGTGRNR---------------VVFSQVDIARATPYAAED 497 Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L++ L P + ER L + + G +D D + + AQ Sbjct: 498 ADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDADDLRAMSIEFAQR 557 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271 ++ +I KL + L LF G+ ++ T S+L Sbjct: 558 MGVIEAEIHKLAGREF-NVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSSVLQDLADQG 616 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL + + L ++ GR+ + + TGR S QN+ Sbjct: 617 HDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSF-QMAVTTTGRLSSNDPNLQNI 675 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A+ G LV AD + IE R+LA Sbjct: 676 P------------------------IRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLA 711 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +A +AFA G+DI+ T ++ F P++ + R K + Sbjct: 712 DVANIPALREAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAINF------------- 758 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ + + A+ Sbjct: 759 -GIIYGIS------------------------------AFGLGRQLGIPPGEARGYIDAY 787 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ G+ + + P RR Sbjct: 788 FARYPGIRDYMERVKAEARAKGYVTT--------------------------PFGRRCWV 821 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DI 624 + + R+ Q + DI+ M + Sbjct: 822 PGIADKSAVRRNYA---ERQAINAPL------QGGAADIIKRAMVRIPAALSDAGLDGRM 872 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E + L +M + +PL E + Sbjct: 873 LLQVHDELVFEVRKDDADRLAALVRQVMESAAT--LSVPLVVETGTGTNW 920 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 111/695 (15%), Positives = 190/695 (27%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 343 AFDTETTALDPMT----------ARLVGLSFSIEPGKAAYLPVAHRGPDMPEQLPIDDVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI + T + + + + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEAT 170 L + GK + QL Y + EA Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDADITLQLHQALYPQVAREAG 510 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R D E + L+ + + G ID L+ IA +L+ +L G Sbjct: 511 LERVYR-----DIEMPVSLVLRKMERTGVLIDDALLQAQSTEIATRLIELEGQAYELAGG 565 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L L+L S Sbjct: 566 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSK 624 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ GR+ A TGR + QN+P Sbjct: 625 LKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 669 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IAS G ++V AD + IE R++A I+G+ ++AFA G Sbjct: 670 ----------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQG 719 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F +V+ +QR I KV+ G+ Sbjct: 720 EDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIYGMS------- 758 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 A + A +L + ++ GV +D Sbjct: 759 -----------------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAHYMEDTR 795 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 796 TTAKDKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 828 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M +++ VHDE+V E PD Sbjct: 829 --ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDD 880 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M +PL AE + Sbjct: 881 ELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 105/702 (14%), Positives = 196/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 ++ D ET S L +A + ++ W + Sbjct: 361 EVCFDTETTSVNAL----------EAELVGISFCWSAHKGYYVPFPTDKVEATKLLETFR 410 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 + +E + V N ++ + + I++ T + ++ Sbjct: 411 PFFENERIGKVGQNLKYDLKVLQNY-NIEVRG-ALFDTMIAHYLLNPDMRHNMDILSETY 468 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN++ + GK R + EY D + T +L Sbjct: 469 LNYTPIAIESLIGKGKAQRSMRTV---------------PLDQVKEYAVEDADVTWQLKN 513 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +D E L + + G +D+ + + + + + +L+ I Sbjct: 514 VFKEEMPKVNAEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIA 573 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + L LF ID ++ T + +L+ IL Sbjct: 574 EQA-GESFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILE 632 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L V+ GR+ T A TGR S QN+P Sbjct: 633 WRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQTVA-ATGRLSSNNPNLQNIP-------- 683 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 VR IA L+ AD + IE R++A ++ E Sbjct: 684 ----------------IRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNM 727 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I +F EDI+ +T AK F+ P+++V++EQR+ K + + G+ Sbjct: 728 IDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGII--------------YGVS 773 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 S L + + + + A + + Sbjct: 774 AFGLSAQ------------------------------TNLSRSESKELIDTYYATYPNLR 803 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + RR D+ Sbjct: 804 NYISKQIQFAQEHGYVETVL--------------------------GRRRYLPDIHSRNQ 837 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + A + +Q + DI+ M ++L VHDE+ Sbjct: 838 VVRGAAERN---------AVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDEL 888 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + P T V + M + A +PL A+ + Sbjct: 889 VFDVPKTELNIVKPLIKEAMESAFNLA--VPLVADLGVGDNW 928 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + TE + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E + V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + I G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + Y +++ + Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + + D + + G L + + Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y +ENI ++L VHDE+ V + Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+A+ + Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F +P++KV+ EQR K + L Y Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L R Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S + LM ++ A +PLK + + Sbjct: 894 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 928 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 198/695 (28%), Gaps = 150/695 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + + Sbjct: 339 SFDTETTSLDPMT----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 389 ARLKPWLESAEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446 Query: 113 C-LALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK F + ++D + Y + E T Sbjct: 447 ALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQALYPQVTAEKT 506 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R E + + + G ID + + IA +L+ + L G Sbjct: 507 LEYVYR-----AIELPTSRVLRKMERTGVLIDAEKLRLQSSEIATRLIQLESEAYVLAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + F + + T + +L ++L S Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDYPLPKILLEHRGLSK 620 Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L V+ + GR+ A TGR + QN+P Sbjct: 621 LKSTYTDKLPRMVNATTGRVHTNYAQAVA-VTGRLASNDPNLQNIP-------------- 665 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA G KLV AD + IE R++A I+G++ ++AF+ G Sbjct: 666 ----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQG 715 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A+ F+ +VS +QR + KV+ L G+ + N Sbjct: 716 EDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLI--------------YGMSSFGLAAN 761 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + A +L + A++ GV + + Sbjct: 762 L------------------------------GITRDAAKLYIDRYFARYPGVARYMDETR 791 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RRL ++ G A Sbjct: 792 VSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA- 824 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDT 639 R +Q + D++ M K G +++ VHDE++ E PD Sbjct: 825 --ERAAINAP------MQGTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDELILEVPDA 876 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM +PL AE + Sbjct: 877 ELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 109/717 (15%), Positives = 195/717 (27%), Gaps = 167/717 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ----------- 50 + ID ET P A + W ++ + + Sbjct: 400 IAIDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELTEATPP 449 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L +L N+ ++R++ + G+ + I T + Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLNGV-VIDTLLADYLRDA 507 Query: 106 --PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L F GK + Y Sbjct: 508 AAKHGLDVMSEREFGFRPTTYGDLVGKKQ------------------TFADVEIEPASLY 549 Query: 163 CKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 C DV TR L +L E+ L + + G RID+ + L Sbjct: 550 CGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLS 609 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSIL 265 + + +L+ + ++ + + L LF G+D T ++L Sbjct: 610 DELGSTLNRLETEAKQVAEVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVL 668 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324 L+L S ++ L + V + GR+ + TGR S Sbjct: 669 EKLEHDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSN 727 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P S +R + G L+ AD + I Sbjct: 728 PNLQNIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQI 763 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+L ++GE+ +A+ G+D++ T D+VS +QR +GK + + Y G Sbjct: 764 ELRILTHLSGEEVLQEAYRTGDDVHALTARLL--LDKDEVSADQRRLGKTINFGVIYGMG 821 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 A+ F + T + + + + + + ++G Sbjct: 822 AQRF-----ARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 876 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 L K + I L Sbjct: 877 FHFDR-------------------------------------NGLGRLLGKDPLEIDLDV 899 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 +RR +Q +R +Q S DI+ M Sbjct: 900 ARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAMLLSQ 940 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + L + M +PL E + + Sbjct: 941 GIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAIK--LSVPLVVETGVGRDWM 995 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 191/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 + ID ET S YA A + ++A ++ E + + Sbjct: 349 TVSIDTETTSL----------YAMDAELVGLSFAVEERQAFYVPVPADRKEAEKIVNIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 E +M V N ++ + + G+ + T + L ++ Sbjct: 399 PLYESEAIMKVGQNMKYDLEVLRNY-GVCLRG-ALFDTMIAHYLIQPELRHNMDYMAEVY 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ G K + + + EY D + T +L Sbjct: 457 LNYQTIHIDTLIGAKGKHQKSMRELSPA---------------QVYEYAAEDADITLQLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G RID + + +++ + L+ I Sbjct: 502 NVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEARI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 +L G + + LF I D ++ T + +L IL Sbjct: 562 YELAGGEF-NIASPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDIL 620 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L + ++ GR+ + + TGR S QN+P Sbjct: 621 DYRGLKKLLGTYVDALPKLINTRTGRIHTSFNQTV-TATGRLSSSEPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G +R I G AD + IE RV+A ++G+ Sbjct: 673 -----------------VRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF G DI+ T AK + ++ V++++R K + G+ Sbjct: 716 IEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGII--------------YGIT 761 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ + + + + V Sbjct: 762 VFGLAERLDID------------------------------RNEAKQLIDGYFMMFPQVK 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E RR D+ + Sbjct: 792 DYMEHSKEVARTHGYVETIFH--------------------------RRRYLPDINSHNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 T R +Q + DI+ M + ++L VHDE+ Sbjct: 826 ---TVRGFAERNAINAP------IQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL A+ + Sbjct: 877 NFSVFPEEKERVERIVMEEMQQAYP--LRVPLVADSGWGTNW 916 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRQWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N F++ + + GID+ + T + + + Sbjct: 405 LDTLKPLLEDEKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P D E L + I G ID +++ + +A Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGVLIDQNILAAHSKELAIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAGEPF-NLASPKQLQVILYEKQQLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVIIEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q + L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQESAPLVRV----------- 880 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH E V Sbjct: 881 ---------------------------IMQ-------------VHDE---LVFEVH-ETV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGDNW 928 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 189/700 (27%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET P A + + + + + Sbjct: 313 FAFDTETTGLDP----------RTAELVGISISLQAHEAFYIPVGHRYLGMPDQLPRETV 362 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L + + V N F+ + G+++ W T + + L Sbjct: 363 LERLRPAFGNPAIRKVGQNLKFDLQILA-VAGLEVQG-SWCDTMLCSYLLNPSRGGHGLD 420 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN G + Y D +A Sbjct: 421 ALAQEHLNHKMISYDEVTGSGKNR---------------ICFSEVEVEKATRYAAEDADA 465 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L ++L+P+ + E L + + G +DL + +L Q ++ Sbjct: 466 TWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQE 525 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274 L++ I++L G + L LF G+ ++ T +L+ Sbjct: 526 LEKRIIELAGGPF-NLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEI 584 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L+ + + L++ GR+ + + TGR S QN+P Sbjct: 585 AKLLLDYRGLTKLKSTYTDALAKLTDRQGRVHTSYNQAV-TATGRLSSSDPNLQNIP--- 640 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G ++ AD + IE RVLA ++ Sbjct: 641 ---------------------IRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQ 679 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + AF+ EDI+ T ++ F + V+ E R K + + Y G + Sbjct: 680 DPVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQG-----AFSLA 734 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + + + E A + E ++G + Sbjct: 735 KQLGVARNVAEKFIAAYKERHSGAIAFLDSCIASAKETGYVTTILGRKLPIA-------- 786 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +L + Y Sbjct: 787 -DITSSNGNLRSFAERNA-----------------------------------INYPIQG 810 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + A + R G + I+Q VHDE+V Sbjct: 811 SAADIIKQAMLGVDRAIRAEGLQSRLIMQ------------------------VHDELVF 846 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T + L M++ A +PLK + K + Sbjct: 847 EVLETELEQMRELVNREMSQAV--ALKVPLKVDIQWGKNW 884 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 107/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + + + K + Sbjct: 782 -GLLYGMS------------------------------AFGLAKQIGVDRAVAQDYIKRY 810 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L + M + WA +PL E + + Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKIAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 108/702 (15%), Positives = 201/702 (28%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58 ++ D ET + L +A + ++ W ++ + Sbjct: 357 EVCFDTETTNVDAL----------EAELVGISFCWAAHKGHYLPFPKEKEAATKLIEQFR 406 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 + +E + V N ++ + + G+++ T + ++ Sbjct: 407 PFFENEQIAKVGQNLKYDLKVLQNY-GVEVQG-ALFDTMIAHYLLNPDMRHNMDILSETY 464 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN++ + GK R + EY D + T +L Sbjct: 465 LNYTPIAIESLIGKGKAQRSMRTV---------------PIDEVKEYAVEDADVTWQLKN 509 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +D E L + + G +D+D + + + + + +L+ I Sbjct: 510 VFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETAIA 569 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGID-LVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + L LF ID ++ T + +L+ IL Sbjct: 570 QQA-GETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVADILE 628 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L V+ GR+ T A TGR S QN+P Sbjct: 629 WRQVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVA-ATGRLSSNNPNLQNIP-------- 679 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 VR IA L+ AD + IE R++A ++ E Sbjct: 680 ----------------IRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNM 723 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I++F +GEDI+ T AK FN P+++V++EQR+ K + + Y D Sbjct: 724 IESFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIY-----GVSAFGLSAQTD 778 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 L + + + + A + + Sbjct: 779 ---------------------------------------LSRSESKELIDTYYATYPNLR 799 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 E + RR D+ Sbjct: 800 NYINRQIEFAREHGYVETIL--------------------------GRRRYLPDIHSHNQ 833 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632 + + +Q + DI+ M K ++L VHDE+ Sbjct: 834 VVRGGAERN---------AVNAPIQGSAADIIKIAMIRIHNQLQAQKLQTRMLLQVHDEL 884 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + P T V + M + A +PL A+ + Sbjct: 885 VFDVPKTELELVKPLIKDAMENAFTLA--VPLVADLGVGNNW 924 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 99/708 (13%), Positives = 187/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 + D ET S PL QA + + A + ++ Sbjct: 356 QFAFDTETDSLDPL----------QADLIGLSVAAEPGQAAYLPFGHHFPGAPAQLDRTQ 405 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ G+ + T + + + Sbjct: 406 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GVALAGYA-DDTLLESFVLNSGSARHDM 463 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 464 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IPFAQISLEDATRYAAEDAD 508 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E L + I G +D + + +++ Sbjct: 509 ITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRM 568 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 569 LAAQQKATELA-GRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 627 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 628 LPRVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 685 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 686 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 722 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 723 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 768 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 769 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 798 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 799 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 832 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M N ++L Sbjct: 833 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVNVDGWIANHAQRAKMIL 883 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M +PL + + Sbjct: 884 QVHDELVFEADIDFVDTLLSEVTTRMAGAAE--LRVPLMVDSGVGDNW 929 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 200/701 (28%), Gaps = 152/701 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 ID ET + A + ++A + Sbjct: 380 FAIDTETDGLD----------TKTAHLIGISFAVAPGKAAYLPLGHDYPEAPAQLNRDKV 429 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L D + V N F++ L GI + + T + + + Sbjct: 430 LALFKPLLEDPQALKVGQNLKFDQSLLANY-GIKLQGIAF-DTMLESYVFNSVAGRHDMD 487 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + + Y D + Sbjct: 488 SLSERHLNHKTLSFEDIAGKGKNQL---------------TFNQIPLEQAAIYAAEDADV 532 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L P + E L + + G ID D++L + + Sbjct: 533 TLRLHLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDILLNHSKELQLRLT 592 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ + G + T L+ L+ + + T +++L+ + Sbjct: 593 ELEKKAHDIA-GETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNEAVLAELALDYPL 651 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L + GR+ + + TGR S QN+P Sbjct: 652 PKIILEHRSLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAV-TSTGRLSSRDPNLQNIP-- 708 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 709 ----------------------VRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLS 746 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ G+DI++ T A+ F P+ +VS +QR K + L Y Sbjct: 747 QDQGLLNAFSEGQDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMS-----AFGL 801 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ +F F + + + +++ + L G L + Sbjct: 802 ARQLNVSRFEAERYMNLYFTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNA 861 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + SR Sbjct: 862 NRR-----KAAEREAINAPMQGTAADIIKRAMIHIDFWLQQEEQKLAPKQKSR------- 909 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q VHDE+V Sbjct: 910 ------------------------VNLIMQ------------------------VHDELV 921 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E D+ S + LM K+ + L LK + + Sbjct: 922 FEVHDSVLKSATDKIRELMEKS---TQNLLLKVDIGFGNNW 959 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 118/713 (16%), Positives = 194/713 (27%), Gaps = 170/713 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + +D ET S P+ + + A + Sbjct: 407 VAVDTETTSLDPM----------SCELVGVSLAITPGRACYIPLQHREPGDGDLFGGAAL 456 Query: 52 ---AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P D L L D+ V+ +AHN ++ ++ + + T +++ T Sbjct: 457 LQGQIPLDKAIATLKPLLEDDAVLKIAHNMKYDLLVLARY---GVDVAPIEDTMLISYTL 513 Query: 104 G---LPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L L G A Sbjct: 514 DTGRNNHGLDELTLKHLGHENIPFSAVAGSG---------------RNFIGFARVALDRA 558 Query: 160 GEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKL 209 EY D + T L++ L P E + + RG ID ++ +L Sbjct: 559 TEYATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRL 618 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSIL 265 AQ+ +L+ DI L G + L LF G+ + T S+L Sbjct: 619 SGEFAQDMARLEADIFDLA-GETFNLGSPKQLGDILFGKMGLPGAKKTATGAWSTSASVL 677 Query: 266 SHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 IL+ S + L V+ GR+ + A+ TGR S Sbjct: 678 EDLANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHTSYALA-ATTTGRLSSS 736 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P A +R +AS G L+ AD + Sbjct: 737 DPNLQNIP------------------------VRNEAGRKIRKAFVASPGHVLISADYSQ 772 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA IA KAFA+G DI+ T ++ F P+ + E R K + + Y Sbjct: 773 IELRLLAHIADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYG- 831 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + FE + + + E + G C Sbjct: 832 ----ISAFGLANQLSIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVC 887 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A +V Sbjct: 888 H---------FPRIGSANASDRAFYERAAINAPIQGAAADIIRRAMVRMDD--------- 929 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 A++ + L M Sbjct: 930 ----------------------------------------ALASEGLKAQM--------- 940 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA--KGLPLKAEGYEAKRY 673 +L VHDE+V E P + + +M + P+ A +PLK + A + Sbjct: 941 -LLQVHDELVFEAPKKEAEATIEIARRVMEEAPAPAVQLAVPLKVDARAAANW 992 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + TE + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E + V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + I G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + Y +++ + Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + + D + + G L + + Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y +ENI ++L VHDE+ V + Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+A+ + Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 195/700 (27%), Gaps = 157/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L DE ++ + N F++ + ++ ID+ + T + + + Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + A + G Y D + Sbjct: 461 SLAERYLSHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L ++L L + I G ID ++ + + + Sbjct: 506 TLHLHQKLWGKLQPHTDLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKRLTIRLA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ +L + T L+ L+ + + + T + +L+ + Sbjct: 566 ELETQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALGYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L ++ + T + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSG 720 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFANG DI+ T ++ F T +DKV+ EQR K + L Y Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L++ + FE + + + + Q E L G L Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +G ++ Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMI------------------------ 862 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 A +R+ T K+ I+Q VHDE+V Sbjct: 863 --------AIDDWLRKDTPKVKM---IMQ------------------------VHDELVF 887 Query: 635 ETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E D+ + + LM +PL+ + + Sbjct: 888 EIHDSVIEESISKIKVLMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 103/718 (14%), Positives = 187/718 (26%), Gaps = 184/718 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + ID ET + QA + + Sbjct: 355 VAIDTETTGLDEM----------QAELVGVSLCTGPGRAAYLPLGHVDGAADLFGSGARV 404 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D +V+ + N ++ + + I T +L+ Sbjct: 405 EGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKVLARH---GIRMVPLDDTMLLSYAQN 461 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L K G K+ I + Sbjct: 462 AGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQVAIDKAS--------------- 506 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 EY D E T L++ L P ER + + + G RID + + + Sbjct: 507 --EYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKR 564 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264 + AQ+ L+ +I +L G + L LF G+ + T + Sbjct: 565 MSNAFAQKMAGLEAEIHELAGGPF-NVGSPKQLGEILFERMGLAGGKQGKTGAFSTGAEV 623 Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 L +L+ A S + L V+ GR+ + GA +TGR + Sbjct: 624 LEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGA-QTGRLAS 682 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R +A+ G +LV D + Sbjct: 683 TDPNLQNIP------------------------VRTDEGRRIREAFVAAPGMRLVSLDYS 718 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A +AF +G DI+ T ++ F P++ + R K + Sbjct: 719 QIELRILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAIN------ 772 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ A ++ Sbjct: 773 --------FGVIYGISGF------------------------------GLARNLRIPRAE 794 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + G D + Sbjct: 795 AQAFIDTYFERFPEIRAYMDRTVAGAKQ--------------------------DGFVRT 828 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----AT 618 RR++ + +Q + DI+ M Sbjct: 829 LFGRRIMTPGIN----------QSGPAAGGARRAAINAPIQGAAADIIRRAMIRMPQAIA 878 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAKRY 673 ++L VHDE+V E + + + +M A +PL + + + Sbjct: 879 HLPARMLLQVHDELVFEVEEAAVPELVEVARGVMQGAADPAVRLDVPLIVDAGQGANW 936 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 105/709 (14%), Positives = 202/709 (28%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + + A + + Sbjct: 361 FAFDTETDSLDYMV----------ANLVGVSCAVAEGEAAYIPVAHDYLDAPQQLDREWV 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 411 IAQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 468 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Q +Y D + Sbjct: 469 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 513 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G I+ L+ + IA Sbjct: 514 TLRLHQRISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLD 573 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L + L+ LF + + T + +L + Sbjct: 574 ELEKKAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 632 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 633 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 689 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 690 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 727 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ PI++VS EQR K + Sbjct: 728 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 774 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 803 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 804 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 835 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 836 --EITSRNGMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 887 Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V + + LM A +PL AE + Sbjct: 888 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 934 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 106/727 (14%), Positives = 202/727 (27%), Gaps = 185/727 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + A A + +++ + + Sbjct: 362 KLVAVDTETDNVD----------AMSAHLVGISFSLSNGEACYIPLAHTQQISVQPQQED 411 Query: 54 -------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + L L + + V N ++ +F GI++ Sbjct: 412 LFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKKVGQNIKYDLTVFANH-GIEL 470 Query: 89 PSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + T + + T ++ L+ + GK Sbjct: 471 QGVAF-DTMLESYTLNSTGRHNMDELAERYLDHKTIAFEDIAGKGKNQL----------- 518 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTI 194 A + EY D + T +L ++LI + E L + + Sbjct: 519 ----TFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARV 574 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G ID D +L + + Q +++ + + T L+ LF + Sbjct: 575 EQNGVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQAF-NLASTKQLQEILFEKLALPVL 633 Query: 253 --LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGT 308 + T + +L L L+ A S + L + ++ GR+ + Sbjct: 634 KKTPKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTS 693 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P A +R Sbjct: 694 YHQAV-TTTGRLSSSDPNLQNIP------------------------IRTEAGRRIRQAF 728 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA +G K+V AD + IE R++A +A ++ I AFANG+DI+ T A+ F + +V+ EQ Sbjct: 729 IARDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQ 788 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + L Y L + + F+ + + +++ Sbjct: 789 RRSAKAINFGLIYGMS-----DFGLANQLAISRDEAKEYMARYFQRYPNVQQFMRDIRES 843 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVP 547 + L G L + + + +A + + Sbjct: 844 ASVKGYVETLFGRRLYL---------PEIKSNNAIRRKAAERLAINAPMQGTAADIIKIA 894 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + + + +R Sbjct: 895 MISID---------------------------------KQIRADQN-------------- 907 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666 + M VHDE++ E G + + M K A +PL AE Sbjct: 908 --IKMIM------------QVHDELIFEVKQECIEYYTGLIKTEMEKAI--AMKVPLIAE 951 Query: 667 GYEAKRY 673 + Sbjct: 952 VGVGANW 958 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 187/699 (26%), Gaps = 157/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 + +D ET S + A I + + + Sbjct: 362 VALDTETDSLDEMR----------AQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPIGQV 411 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L D + + ++R +F GI++ T + + + P +L + Sbjct: 412 LARLKPWLEDGRRHKLGQHIKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHNLGS 469 Query: 112 ACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + GK Y D + T Sbjct: 470 LAERHTGRKGISYEDLCGKGAHQL---------------PFAQVPVDKAAAYSCEDADLT 514 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + L P + E I G ID + + + Q ++L Sbjct: 515 LNVHQTLWPQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQL 574 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276 D L + L F G+ +V + T + +L Sbjct: 575 QADAYALAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAENYPLPA 633 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + L++ GR+ A TGR S QN+P Sbjct: 634 KLLEHRGLIKLKGTYTDKLTQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP---- 688 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G + AD + IE R++A ++ + Sbjct: 689 --------------------IRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDD 728 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF G D++ T A+ F +D+VS EQR KV+ L Y G + Sbjct: 729 QALLHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMG-----SFGLAK 783 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L L+ + F+ + + + + + + G L Sbjct: 784 NLGLENKAAAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYL---------P 834 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + G Sbjct: 835 EINSPNGPRRSGA----------------------------------------------- 847 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + S +N K+ VQ E +A + +++ VHDE+V E Sbjct: 848 ERSAINAPMQG---TAADLIKMAMVAVQ-------KE--LDAQQPAIRMIMQVHDELVFE 895 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P + + LM + + +PL AE + Sbjct: 896 LPGNAVDWLRTHVPRLMAEVAT--LKVPLLAEVGVGPNW 932 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 200/694 (28%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A+ + + ++A T + + L L + + V ++ Sbjct: 348 AQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKALKPLLENPNKLKVGQHAK 407 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLT 123 FE + GI + + T + + + + L S+ Sbjct: 408 FETNILANCAIGGDQNNGILVQGIAF-DTMLESYVLDSTATRHDMDSLALKYLGQSKTDF 466 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + + +L G Y D + T L + L Sbjct: 467 QDIAGKGVKQL---------------TFDQISLELAGPYAAEDADVTFRLHQALQEKLAA 511 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + ++ L+ + + Sbjct: 512 TPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVALEREAFAIAGEEF 571 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 572 -NLGSPKQLGVILYEKLGLPVLSKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKL 630 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++S GR+ Q A TGR S QN+P Sbjct: 631 KSTYTDRLPEQINSRTGRVHTNYQQAVA-ATGRLSSIDPNLQNIP--------------- 674 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF + Sbjct: 675 ---------IRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHNL 725 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ +QR K + G+ Sbjct: 726 DVHRATAAEVFGVELEAVTLDQRRSAKAINF--------------GLIYGMS-------- 763 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 764 ----------------------AFGLAKQIGVDRKQSQAYIDRYFARYPGVLAYMERTRA 801 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 802 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPALR---KG 832 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M + ++L VHDE+V E + Sbjct: 833 AERTAINAP------MQGTAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDL 886 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M+ + +PL E + Sbjct: 887 VDQVRDEIRQHMSAAAT--LDVPLLVEVGVGNNW 918 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 114/690 (16%), Positives = 211/690 (30%), Gaps = 129/690 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SAMPSDL 57 D ET P A + W E + Q + L Sbjct: 371 DTETTDLNP----------RVAKLVGIGCCWGKELNAMAYIPIGHQSGDNLNLEIVLEKL 420 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 L + V N+ F+ +F GI + T V + L +L++ C Sbjct: 421 RPILASDDYPKVFQNAKFDIDVF-YHQGITVKGL-VFDTMVASYVLHPELTHNLEDLCDR 478 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+L K D + A+ + K E T ++ Sbjct: 479 YL---TGITSLSYKSLGIPAGKTIADLDIPTTANYCGLDAYATYLLREKLQAELT-KIPP 534 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 S+ E L ++ + + G +I+++ + + + ++ ++++ + G + Sbjct: 535 LYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLERDLAYIEKNAYESI-GETFNL 593 Query: 236 RQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF ++ T +S+L D IL S Sbjct: 594 SSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQGDHPLVDYILEHRTLSKLKST 653 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + R+ + TGR S QN+P Sbjct: 654 YVDALPKLAEPKTARVHTDFNQT-ITSTGRLSSSNPNLQNIP------------------ 694 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 S +R I NG LV AD + IE R+LA ++ E ++A+ + +D++ Sbjct: 695 ------IRSEFSRRIRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVH 748 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T F+ +++ E+R++GK + + Y GA+ F + L Sbjct: 749 KVTAQLLFDK--REITPEERSLGKTINFGVIYGMGAQKFARESK-----LTVEQGRKFIE 801 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + Q + + Q + ++G + + +L Sbjct: 802 KYHQRYAQVFEYLENSKKQAITQGYVETILGRRRYFNFD-----NPLLKRL--------- 847 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R L D+ D LN +QL+R Sbjct: 848 ------------------------------------RGLSLHDIDLDSLKLNNEEAQLLR 871 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645 +Q S DI+ M + ++L VHDE+V E P + S+ Sbjct: 872 SAANAP------IQGSSADIIKVAMVKLAEVLQNYRARLLLQVHDELVLEVPREEWPSLE 925 Query: 646 -TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M + S +PL E + Sbjct: 926 SKIKTTMEEAVS--LTIPLLVEIKAGDNWM 953 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F +P++KV+ EQR K + L Y Sbjct: 722 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L R Sbjct: 777 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 893 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S + LM K+ A +PLK + + Sbjct: 894 ----ESVLQSAEQKIRELMEKSMQLA--VPLKVDVGVGANW 928 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 203/700 (29%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGMSFAVAPGEAAYLPLAHDYLDAPAQLDRNWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L +E + V N F++ + + GI++ + T + + + Sbjct: 405 LATLKPLLENEKALKVGQNLKFDQSMLARY-GIELRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 837 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRDLMEQSMQLA--VPLKVDVGVGYNW 928 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 207/712 (29%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 D ET S P+ QA + + A E Sbjct: 380 FFAFDTETTSLDPI----------QAKLVGFSLALQPEKAAYVPLEHVEGENDLLKGGRI 429 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D+ V+ + N ++ ++ K+ I + T +L+ Sbjct: 430 VSQIETQKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY---GIVIHCFDDTMLLSYALE 486 Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157 L ++ L K GK + + + Y A+ ++ WQ Sbjct: 487 AGTLTHNMNALSERWLGHKPIAYKDLTHNGKKITSFAEVDLKQATLYAAEDADITLRLWQ 546 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + +++RL +R L + + +RG +D ++L+L +AQ Sbjct: 547 VLKPQLVAQGMT--RIYERL------DRPLIEVLARMEERGILVDRQILLRLSGELAQAA 598 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NIT 271 L+E+I +L+ + L LF G+ ++ T L Sbjct: 599 FILEEEIYQLSGEKF-NLASPKQLGDILFGKMGLPGGAKTKGGQWSTSAQTLEELAAEGH 657 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L + +I R + + L + GR+ + TGR S QN+ Sbjct: 658 ILPRKIIDWRQ-LAKLKSTYTDALPSYILPKTGRVHTNYSLA-ITSTGRLSSSEPNLQNI 715 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R+ +A L+ AD + IE R+LA Sbjct: 716 P------------------------VRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILA 751 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF+ G+DI+ T ++ F I+ + + R K + Sbjct: 752 HIANITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINF------------- 798 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + L + + Sbjct: 799 -GIIYGIS------------------------------AFGLANQLGLSRQEAGRYIQLY 827 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + RR+ Y Sbjct: 828 FERFPGIKDYIETTKTFARQNGYVETIF--------------------------GRRIHY 861 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624 ++K + S R +Q + DI+ M K + Sbjct: 862 PEIK---AASPQVRSFNERAAINAP------IQGSAADIIRRAMIQMEDALEKEKLSAKM 912 Query: 625 VLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E P+ ++ + +M P + +PL+ + A+ + Sbjct: 913 LLQVHDELVFEVPEEESKKTMAVVKKVMENATMPVLSLSVPLEVKVMVAQNW 964 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID ++++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGVLIDQNILVAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F ++KV+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E L G L R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 875 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 928 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 199/700 (28%), Gaps = 154/700 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + A+ Sbjct: 354 KIGIDTETTSLD----------AMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQY 403 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 404 VLDRLKPHLENPALKKIGQNLKYDQHVFANC-GIALNGI-VGDAMLASYIIESHLGHGLD 461 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + D Sbjct: 462 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDDK 521 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 522 QLEM--------YEKMELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAA 573 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T + +L +IL Sbjct: 574 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKN 632 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S D R+ T A TGR +G QN+P Sbjct: 633 RSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVA-ITGRLAGNNPNLQNIP--------- 682 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 683 ---------------IRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 727 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + G+ Sbjct: 728 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTIN--------------FGLIYGMGQY 773 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A + + + + A++ GV + Sbjct: 774 ------------------------------GLAKSLGIDNLSAKNFIDRYFARYPGVAEY 803 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E ++ RRL SD++ + + Sbjct: 804 MQRARECA--------------------------AGQGYVETLFGRRLYLSDIRHTNANI 837 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVS 634 ++ R +Q + D++ M + ++ +++ VHDE+V Sbjct: 838 R---ARAERAAINAP------MQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVL 888 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ V L +M +PL AE + Sbjct: 889 EVPEAELDLVKEKLPQMMAAVDDGMLDVPLVAEVGAGMNW 928 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 109/708 (15%), Positives = 210/708 (29%), Gaps = 163/708 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 ++ D ET S + A + + + + Sbjct: 344 EVAFDTETTSLNEMT----------AELVGVSLCIEPGAACYIPLLHRGGGDDLFADTSL 393 Query: 52 ---AMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P L L D +VM VA N+ ++ + + T +L+ Sbjct: 394 AEGQIPFDDAMEILQPMLEDRSVMKVAQNAKYDVKVLANY---GVEVAPIDDTMLLSYAL 450 Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + L + K G K+ I D+ PY A+ + Sbjct: 451 HAGLHNHGMDGLAERYLGHTPLPIKSLIGSGKSQITFDRVPIADAAPYAAEDADITLRFH 510 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + V T ++++RL ER L + + G ++D D++ ++ AQ+ Sbjct: 511 KLFKPKLHQVGVT-KVYERL------ERPLVPVLARMERSGIKVDKDVLSRMSNAFAQKM 563 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQL 273 L+ +I +L G + L LF G+ T IL Sbjct: 564 AGLEAEIHELA-GESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDLATEHD 622 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L+ S + L + +++D GR+ + GA+ TGR + QN+P Sbjct: 623 LPGRVLDWRQLSKLKSTYTDALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIP- 680 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A GK LV D + IE R+LA I Sbjct: 681 -----------------------IRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHI 717 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 AG D AF +G+DI+ T ++ FN P+++++ + R K + Sbjct: 718 AGIDALKDAFKDGQDIHAATASEMFNVPLEEMTPDVRRQAKAINF--------------G 763 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A ++ + + Sbjct: 764 VIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYFE 793 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + G+ D + ++++ R++ Sbjct: 794 RFPGIRTYMDDTKKFAKE--------------------------NLYVQTLFGRKIHTP- 826 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628 + + R +Q + DI+ M ++L V Sbjct: 827 ---EINAKGPGAGFAGRAAINAP------IQGTAADIIRRAMIRMEDAIEGIPAKMLLQV 877 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 HDE+V E + ++ +M A +P+ + + + + Sbjct: 878 HDELVFEVDEDATDTLIARAREVMEGAADPAVHLSVPITVDAGQGETW 925 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 95/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + TE + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRTEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E + V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGALKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + I G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + Y +++ + Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + + D + + G L + + Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYL---------PDINSRNSVVRGY 881 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKA 901 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y +ENI ++L VHDE+ V + Sbjct: 902 AMVRIYQRFQSENI-------------------KSKMILQVHDELNFSVLPEEKEKVQKI 942 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+A+ + Sbjct: 943 VIEEMENA--YHMQVPLRADCGWGSNW 967 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 201/703 (28%), Gaps = 161/703 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S L A + ++A A+ Sbjct: 351 FAFDTETDSLDTLT----------ANLVGMSFAITAGDAAYLPLGHDYLGAPEQLDRDAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSS 108 + L L D ++ + N F+ + + GI++ + T + + Sbjct: 401 LAALKPLLEDSNLLKIGQNIKFDCGVLVRY-GIELQGIAY-DTMLESYVLNSVAGMGRHD 458 Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN+ + GK + + Y D Sbjct: 459 MDSLAERHLNYKTTTFEEIAGKGKNQL---------------TFNQVPVEQAAMYAAEDA 503 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L + + P + E L ++ + G I+ D++ + + IA Sbjct: 504 DVTLQLHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVR 563 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 +L+++ +L G + + L+ LF + +V + T + +L Sbjct: 564 LDELEKEAHELA-GEVFNLASPKQLQTILFEKLNLPVVKKTPGGAPSTNEEVLEELVDHH 622 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +IL + + L + V R+ + + TGR S QN+P Sbjct: 623 ELPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAV-TATGRLSSRDPNLQNIP 681 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IAS G +++ AD + IE R++A Sbjct: 682 ------------------------VRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAH 717 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + +KAFA G+DI+ T A+ F+ P+++V+ EQR K + L Y Sbjct: 718 LSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMS-----AF 772 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + FE + ++ ++Q E + L G L Sbjct: 773 GLSRQLGIPRGEAQRYMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYL------ 826 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + Sbjct: 827 ---PDIKSRNGTRRKAAEREAINAPMQGTAADII-------------------------- 857 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + K+ I+Q +V VH Sbjct: 858 --------KKAMIAVDDWIISEAPKVRM-IMQ-------------VHDE---LVFEVH-- 890 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + + LM K+ +PL+ + + Sbjct: 891 ------ESELENTEQKIRELMEKSV--VLDVPLQVDVGIGDNW 925 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 106/686 (15%), Positives = 193/686 (28%), Gaps = 137/686 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLL--- 58 + +D ET PL + ++A D+ +P+D++ Sbjct: 329 VAVDTETDGLDPLTC----------RLVGVSFAVDEGRACYVPLAAPDVRPLPADVVREV 378 Query: 59 --QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113 L V+ V N F+ + ++ G+ P + T V A +L Sbjct: 379 LSPLLVSTEVVKVGQNLKFDYHVLRRW-GVR-PEGPFFDTMVAAWLLESDAGRYNLDRLA 436 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K K + ++ Y A+ E Sbjct: 437 EKYLGWRTIHYKDVVEKGA-SFETVPVAEAGVYAAEDAD-----IALRLSRVLKERLEAE 490 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ + E L + + + G +D + + + + ++++I +L Sbjct: 491 GLGRVF--YEMEMPLLSILARMEEWGIGLDGEALSAFGRELEERISTIEKEIFELVGHEF 548 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L+ LF+ G+ V ++ T S+L +L + + Sbjct: 549 -NVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAARDPVAAKVLEYRSLTKLKN 607 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V+ GRL G + TGR S QN+P Sbjct: 608 TYVDVLPGLVNPGTGRLHTWFSQVG-TATGRLSSKDPNLQNIP----------------- 649 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G + AD + IE +LA ++ + +AF GED+ Sbjct: 650 -------IKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDV 702 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T + F P + V+ EQR I K + + Y L + + Sbjct: 703 HRATGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMS-----AFRLSRELGIPRKEAERFI 757 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + F + + + E L G L R K Q Sbjct: 758 DAYFTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKT--------GAE 809 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 V S + +L D+ + A+ Sbjct: 810 RIAVNTPIQGSGADII----------------------KLAMIDLDAQMRRMGLASR--- 844 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 M L VHDE++ E P + L Sbjct: 845 -------------------------MI----------LQVHDELIFEVPPEELEVMKRLV 869 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ E + + Sbjct: 870 RERMEGVVR--LSVPLRVEMGVGRNW 893 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 109/727 (14%), Positives = 200/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTE----- 49 + D ET S A QA + + A D Sbjct: 418 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467 Query: 50 --------QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + +P L L DE+V+ VA N ++ +L K+ I ++ + T Sbjct: 468 DLLGGGLADNQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 525 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 569 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 570 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 629 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I + G + L LF G+ ++ Sbjct: 630 RQILSRLSGELAQGAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLSGGSKTKTGQW 688 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L I++ + + L V + + T ++ T Sbjct: 689 STSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 748 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 749 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 784 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 785 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 844 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 845 --------------GIIYGISAFGLANQLSIE---------------------------- 862 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 863 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 901 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 902 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 945 Query: 618 TKN--------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PL+ + Sbjct: 946 EPALVEVGLADRVRMLLQVHDELIFEVEDQDVEKAMPVIVSVMENATMPALEMRVPLRVD 1005 Query: 667 GYEAKRY 673 A + Sbjct: 1006 ARAATNW 1012 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 104/709 (14%), Positives = 200/709 (28%), Gaps = 173/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET + + A I +++ + + Sbjct: 357 VALDTETSALDAMR----------AQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L D + + ++R +F GI++ T + + + P +L + Sbjct: 407 LARLKPWLEDARHAKLGQHIKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHNLAS 464 Query: 112 ACLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + GK I + Y D + Sbjct: 465 LAERHTGRTGLNYEDLCGKGVHQIPFAQVSVDKAA-----------------TYACEDSD 507 Query: 169 ATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T E+ + L PL + E + G ID L+ + + Q Sbjct: 508 QTLEVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRIL 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274 +L+ + ++ + L F G+ +V + T + +L Sbjct: 568 RLETEAYEIAGQPF-NLNSPKQLGEIFFDKLGMPVVRKTTTGARSTNEEVLEKLAADYPL 626 Query: 275 KDLILNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + S + L A+ GR+ A TGR S QN+P Sbjct: 627 PARLLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYAQAVA-VTGRLSSSDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G+ + AD + IE R++A I+ Sbjct: 684 ----------------------VRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAHIS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF +G D++ T A+ F P+ +VS EQ Sbjct: 722 GDPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQ------------------------- 756 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + L A L A + + + + Sbjct: 757 -------------------RRYAKVINFGLIYGMSSFGLAKNLGLDRQAAKNYIQRYFER 797 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV Q ++ + RRL+ ++ Sbjct: 798 YPGVRQYMEETKARAKSLGYVETVF--------------------------GRRLMLPEI 831 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 A + +Q + D++ + M +++ Sbjct: 832 NSPNGPRRAAAERAA---------INAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQ 882 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+V E P+ + + LM A +PL AE + K Sbjct: 883 VHDELVFELPENAVDWLRAEVPRLMAGVA--ALRVPLLAEVGVGGNWDK 929 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 86/692 (12%), Positives = 188/692 (27%), Gaps = 143/692 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57 +D ET P+ A + ++++ + + + + Sbjct: 359 KFFSLDTETTGIDPIT----------AELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 + + + N ++ I+ G+ + K + T + L + Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANY-GVTLKGKMF-DTMIAHYVLQPELRHGMDYLAEI 466 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G + D P + A + E Sbjct: 467 YLKYETIKIEELIG--AKGKKQGNMRDLAPEAVYKYACEDADVTLKLKQVLENELETNGV 524 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K+L + E L + + G RID + + + +++E++ +L + Sbjct: 525 KKLFE--EIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQLAGMEF-N 581 Query: 235 SRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + LF I + ++ T + +L IL Sbjct: 582 IASPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLG 641 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 642 TYIDALPQLINPATGRIHTSFNQTV-TATGRLSSSNPNLQNIP----------------- 683 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I G + AD + IE R++A ++ + I+AF +DI Sbjct: 684 -------IRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEAFQKDQDI 736 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T AK + +++V++EQR+ K + G+ + ++ + Sbjct: 737 HAATAAKIYKVKLEEVTREQRSKAKTANFGII--------------YGISVFGLAERLNV 782 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + V + Sbjct: 783 D------------------------------RKEAKALIDGYFENYPNVKAYMDQSIQEA 812 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 I R+ D+ + + + Sbjct: 813 REKGY--------------------------IETIFKRKRYLPDINSKNAVVRGYAERN- 845 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +Q + DI+ M + ++L VHDE+ Sbjct: 846 --------AINAPIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKE 897 Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S M + PL+A+ + Sbjct: 898 KVQQIVISEMEAA--YKMKAPLRADHGWGHNW 927 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/710 (14%), Positives = 202/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + + + Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L D +++ + N ++ +F + LGI++ T +L+ Sbjct: 396 LAEGQIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ-LGINVAP--IDDTMLLSYA 452 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L+ + K + GK+ I D+ Y A+ ++ Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R ++++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQLFKPQLHRVGVT--KVYETL------ERPLVPVLAAMERSGVKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L++DI +L + L LF G++ + T +L Sbjct: 565 KMAGLEDDIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDLATE 623 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 624 HDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 682 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 683 P------------------------IRSEEGRRIREAFVAEPGKALVALDYSQIELRILA 718 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF +G DI+ T ++ F P+D+++ + R K + Sbjct: 719 HIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINF------------- 765 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 766 -GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 794 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ D + R++ Sbjct: 795 FERFPGIRTYMNDTKAFAKEHG--------------------------FVQTLFGRKIHT 828 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + S R +Q + D++ M ++L Sbjct: 829 P----EISAKGPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPDAIKDLPATMLL 878 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + +M P + L + + Sbjct: 879 QVHDELLFEVEKGAEDDLIAAARHVMENAADPVVKLDVKLDVDAGVGASW 928 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 205/709 (28%), Gaps = 166/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL------ 57 + +D ET + A + + + T + + DL Sbjct: 348 VAVDTETTGLNEMI----------ADLVGISLCIEPGEACYIPLTHRESATDDLFGSDAL 397 Query: 58 --------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D +++ + N ++ +F + + T +++ Sbjct: 398 AEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY---GVNVVPIDDTMLMSYAM 454 Query: 104 G---LPSSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ + K + GK+ I ++ Y A+ ++ W Sbjct: 455 HGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFDKVPIDEATAYAAEDADITLRLW 514 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF + T +++ L ER L + + G ++D D++ ++ AQ+ Sbjct: 515 KLFKPQLHQVQVTT--VYETL------ERPLVPVLAEMEMNGIKVDRDVLSRMSNAFAQK 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQ 272 L+ +I +L G + L LF G++ T IL Sbjct: 567 MAGLEAEIHELA-GENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYSTGADILEDLATEH 625 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L+ S + L ++ D GR+ + GA+ TGR + QN+P Sbjct: 626 ELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQNIP 684 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G LV D + IE R+LA Sbjct: 685 ------------------------VRTEEGRRIRGAFIAEPGNVLVSLDYSQIELRILAH 720 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA +AFA+G DI+ T ++ F+ P+D+++ E R K + Sbjct: 721 IADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAIN--------------F 766 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A ++ + + Sbjct: 767 GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRYF 796 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ + D + R++ Sbjct: 797 ERFPGIRRYMDDTVAFAKEHGY--------------------------VQTLFGRKIHTP 830 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLT 627 + + R +Q + D++ M ++L Sbjct: 831 ----EINAKGPHAGFSRRAAINAP------IQGTAADVIRRAMVRMPGAINGLPAKMLLQ 880 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + + +M P+ + L A+ + + Sbjct: 881 VHDELLFEVAEGAVDETIGIARDVMEGAADPAVKLDIKLVADAGQGANW 929 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 111/703 (15%), Positives = 208/703 (29%), Gaps = 154/703 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQS-------AMPSDL 57 D ET S P A + W E + + L Sbjct: 371 DTETDSLSP----------RDAHLVGIGCCWQGEEQAIAYIPVGHKEGDNLDLETALEGL 420 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 L + V N+ F+R++F + GI + T + +L + Sbjct: 421 RPILESDVYPKVLQNAKFDRLVF-QFQGIQLQGV-VFDTMLANYVLNPERSHNLTDLSRN 478 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + K K + EYC DV T +L Sbjct: 479 YLQITAKSYKELVKKGQ------------------TIADLSITQVAEYCGLDVFTTYQLR 520 Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++L + E L + + G RID + + L + + ++L+ Sbjct: 521 EKLEAELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLEADLQRLEAG 580 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLI 278 +L G I + L LF +D+ + T + L D++ Sbjct: 581 AYELA-GEIFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQGDHPIIDVL 639 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + ++ L V D R+ + TGR S QN+P Sbjct: 640 LEYRTLAKLKSTYVDALPMLVRDDTHRIHTDFNQAV-TATGRLSSSNPNLQNIP------ 692 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 S +R+ I + L+ AD + IE R+LA ++ E Sbjct: 693 ------------------IRTEFSRQIRAAFIPESSWILMAADYSQIELRILAHLSQEPR 734 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++A+ NG+D++ T D+++ E+R + K++ + Y G F A Sbjct: 735 LLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFAREA----- 787 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ ++ + + ++ M+ + + ++G + +G+ Sbjct: 788 GVKYSEAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGRRRYFEFDS-----RGL 842 Query: 518 LQLW-KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + K L E V Sbjct: 843 KKYRGKALEELAE-------------------------------------------VDLS 859 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEI 632 +++ L+R +Q S D++ M +++ VHDE+ Sbjct: 860 DIKMSSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRLLMQVHDEL 913 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 V E P V + + M +PL AE + + Sbjct: 914 VLEVPVDEVDDVRSQIKTTMETALP--LSIPLVAEVHTGANWM 954 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 94/692 (13%), Positives = 197/692 (28%), Gaps = 145/692 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 L ID ET +P+ +A + +++ + E + ++L Sbjct: 382 ILSIDTETTGTEPM----------EAELVGMSFSDAENKGYYVPVPPNREEALKIINELR 431 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E + V N ++ I+ + G+ + T + L ++ Sbjct: 432 PLYENEKSLKVGQNIKYDMIVLQNY-GVQVRG-ALFDTMLAHYVLQPELRHNMDYLAEIY 489 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L++ G K + + Y + + E + Sbjct: 490 LHYQTIHIDELIGAKGKNQKNMRDLPAEDVYRYACEDADI---TLKLKNVLEKELKEQGA 546 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E L + I G R+D + + + E ++++++I +L G + Sbjct: 547 EHLF--YEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELA-GETFN 603 Query: 235 SRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + LF I + ++ T + +L IL Sbjct: 604 IGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILEYRGLKKLLS 663 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L + ++S GR+ + + TGR S QN+P Sbjct: 664 TYIDALPQLINSRTGRIHTSFNQAV-TSTGRLSSSNPNLQNIP----------------- 705 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I +G + AD + IE R++A ++ + I AF +G DI Sbjct: 706 -------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDI 758 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T AK + I++V+ + R K G+ + ++ Sbjct: 759 HAATAAKIYKIDIEEVTSDMRRKAKTANF--------------GIIYGISVFGLAER--- 801 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + + V + + Sbjct: 802 ---------------------------LNVSRQEAKELIDGYFETYPQVKEYMDKSIQVA 834 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 R+ D+ + + Sbjct: 835 RENGYVETIFH--------------------------RKRFLPDINSRNAVVRGYA---E 865 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642 R +Q + DI+ M + K ++L VHDE+ P + Sbjct: 866 RNAINAP------IQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNFSVPASEKE 919 Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PLKA+ + Sbjct: 920 LVQQIVIEEMEHA--YRMHVPLKADCGWGNNW 949 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 193/708 (27%), Gaps = 173/708 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A I + + + + Sbjct: 374 ALDTETTSLDEMR----------AEIVGISLSVEPGAAAYIPLRHAGPDAPEQLPADEVL 423 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNA 112 L +L D + + ++R +F GI++ T + + P L + Sbjct: 424 QRLKPWLEDAARPKLGQHVKYDRHVFANA-GIEVHGY-VHDTMLQSYVLEVHRPHGLASL 481 Query: 113 CLAL-NFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L N + + GK I + Y D + Sbjct: 482 ALRHTNRTGISYEDLCGKGAHQIPFAQVPVDKAAA-----------------YACEDADQ 524 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T ++ + L P + E I G ID + + + Q + Sbjct: 525 TLDVHRVLWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQ 584 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L+++ + + L F G+ +V + T + +L Sbjct: 585 LEQEAYDIAGQPF-NLASPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLP 643 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + S + L++ GR+ A TGR S QN+P Sbjct: 644 AKLLEHRSLSKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNIP--- 699 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR IA+ G + AD + IE R++A ++G Sbjct: 700 ---------------------IRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSG 738 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ ++AF G D++ T ++ FN +++VS EQ Sbjct: 739 DESLLRAFHEGRDVHRATASEVFNVELEQVSSEQ-------------------------- 772 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + + L A + A + ++ Sbjct: 773 ------------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDRYFQRY 814 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + + E RRL D+ Sbjct: 815 PGVKRYMDETVEFARDHGYVETVF--------------------------GRRLYLVDIN 848 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTV 628 G R+ +Q + D++ + M +++ V Sbjct: 849 GGS---GPRKKAAERQAINAP------MQGTAADLIKKAMVAVQAELDARQSEVRVIMQV 899 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE+V E P+ V + LM +PL AE + K Sbjct: 900 HDELVFELPEGESDWVRTEIPRLMAGVAD--LKVPLLAEVGLGPNWDK 945 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 93/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + E + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E V+ V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + Y +++ + Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + + D + + G L + + Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYL---------PDINSRNSVVRGY 881 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + ++ Sbjct: 882 AERNA----------------------------------------INAPIQGGAADIIKV 901 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y +E+ + M L VHDE+ V + Sbjct: 902 AMVRIYQRFQSES---------IKSKMI----------LQVHDELNFSVLPEEKEKVQKI 942 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+A+ + Sbjct: 943 VIEEMENA--YRMQVPLRADCGWGSNW 967 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 93/687 (13%), Positives = 190/687 (27%), Gaps = 132/687 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSD 56 ++ +D ET P+ A + ++++ + E + ++ Sbjct: 398 KEIFSLDTETTGTDPIT----------AELVGMSFSYAENQAFYVPVPADRAEAQKIVNE 447 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 E V+ V N ++ ++ G ++ T V L ++ Sbjct: 448 FRPAFEKEGVLKVGQNIKYDMLVLGNY-GTEVRG-PLFDTMVAHYVLQPELRHNMDYLAE 505 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G + K D P + A + E Sbjct: 506 IYLHYQTIHIEELIG--PKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTND 563 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G R+D + + + E +++E++ +L Sbjct: 564 AEKLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDF- 620 Query: 234 SSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF T + +L IL Sbjct: 621 NIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLL 680 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ G++ + + TGR S QN+P Sbjct: 681 GTYIDALPLLINKETGKIHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 723 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I +G + AD + IE R++A ++G+ I+AF G+D Sbjct: 724 --------IRNEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDD 775 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + IDKV++EQR+ K + Y +++ + Sbjct: 776 IHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + + D + + G L + + Sbjct: 831 IDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRYL---------PDINSRNSVVRGY 881 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + ++ Sbjct: 882 AERNA----------------------------------------INAPIQGSAADIIKV 901 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y +E+ + M L VHDE+ V + Sbjct: 902 AMVRIYQRFQSES---------IKSKMI----------LQVHDELNFSVLPEEKEKVQKI 942 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+A+ + Sbjct: 943 VIEEMENA--YRMQVPLRADCGWGSNW 967 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 201/700 (28%), Gaps = 155/700 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + +D ET S A I ++A Sbjct: 350 RFAVDTETTSLD----------YRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQLDAQF 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L + + + + ++ +F GI + + T + + + Sbjct: 400 VLDILKPILENPAIGKIGQHMKYDAHVFNNH-GISLAGWAF-DTMLASYVLNPTATRHGM 457 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + LN++ + GK + W+L+ + K + Sbjct: 458 DDLAQYYLNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLYEHFSKELAK 517 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + L D E + + + G R+D+ + +L + + L+ ++L Sbjct: 518 IP-RLERLL---LDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELA 573 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L LF GI + T ++IL + IL + Sbjct: 574 GQPF-NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHP--IIATILEYRSL 630 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S ++L R+ + A TGR S QN+P Sbjct: 631 SKLKSTYTDSLIAQSDPATQRVHTSYHQAIA-ATGRLSSTDPNLQNIP------------ 677 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G +R IA G+ ++ AD + IE R++A + ++ +KAF Sbjct: 678 ------------IRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFR 725 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +G DI+ T A+ ++ V+ +QR K + G+ Sbjct: 726 DGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLYGMS----- 766 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + L + + +++ V ++ Sbjct: 767 -------------------------AFGLAKQLNLSRAEAQEYITLYFSRYPSVHDYMEN 801 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 A + RRL +++ + + A Sbjct: 802 TRALAAEQGYVETVL--------------------------GRRLYMENIRAGNAMVRQA 835 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDT 639 R Q + DI+ M + K ++L VHDE+V E + Sbjct: 836 A---ERAAINAPL------QGSAADIIKLAMISVDQSLPKEHAKMLLQVHDELVFEVDED 886 Query: 640 PYFSV-GTLCSLMTKNPSWAKG-----LPLKAEGYEAKRY 673 V L LM P+ +G +PL+ E + Sbjct: 887 KADEVTALLKKLM---PAVLQGRADIAVPLEIEVGRGVNW 923 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 116/700 (16%), Positives = 190/700 (27%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + ID ET S P+ A I ++A + Sbjct: 359 VAIDTETDSLDPMR----------ARIIGISFAVQPLEAAYVPVGHDYPGAPDQLPLDEV 408 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 + L +L D V N ++ +F G+ + T + + P L + Sbjct: 409 LARLRPWLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYA-HDTMLESYVLEAHKPHGLAS 466 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A Y D E T Sbjct: 467 LADRHLGRSGINYEDLCGKGAGQ---------------IPFSHVAVDQASTYSGEDSEMT 511 Query: 171 RELFKRLIPLSDGERDL-----------WLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 ++ + L P + E L + I G ID ++ + +AQ Sbjct: 512 LQVHQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHT 571 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275 L+++ + + + LF G+ + + T + +L Sbjct: 572 LEQEAHAIAGQPF-NMSSPKQIGEILFTKLGLPVKKKTASGAPSTDEEVLQELAADYPLP 630 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL + + + L V+ GR+ A TGR S QN+P Sbjct: 631 ARILEHRSLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVA-ITGRLSSNDPNLQNIP--- 686 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR +A+ G KLV AD + IE R++A I+G Sbjct: 687 ---------------------IRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISG 725 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +KAFA+G D++ T A+ FN V+ EQR K + L Y G Sbjct: 726 DANLLKAFADGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMG-----AFGLA 780 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L ++Q + F + + + + + + L G L Sbjct: 781 ASLGIEQKAARDYIERYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVL--------- 831 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +L V+ Sbjct: 832 PEIKGGNGPRKAAAERQAINAPMQGTAADLI---------------------KLAMIAVQ 870 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 A+ M + VHDE+V Sbjct: 871 KAIDDEGRASK----------------------------MI----------MQVHDELVL 892 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ L LM +PL AE E + Sbjct: 893 EVPEAELGWAREALPRLMAGVAQ--LKVPLVAEVGEGANW 930 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 89/539 (16%), Positives = 161/539 (29%), Gaps = 88/539 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L++ + FE + + + Q E + L G L Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSN 832 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 107/717 (14%), Positives = 201/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + + + K + Sbjct: 785 -GLLYGMS------------------------------AFGLAKQIGVDRAVAQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 116/713 (16%), Positives = 212/713 (29%), Gaps = 169/713 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL----- 57 + ET S P+ QA + + A E DL Sbjct: 380 FFAFNTETTSLDPM----------QAKLVGFSLALQPEKAAYIPLEHFDEGEEDLLRGGH 429 Query: 58 --------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L D +V+ + N ++ ++ K+ DI + T +L+ Sbjct: 430 IASQIETRKALALLKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAF 486 Query: 104 G---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 L ++ + L K GK + + + Y RA+ ++ W Sbjct: 487 DAGILTHNMDDLSERWLKHKPISYKDLTHNGKKITSFAQVDLKQATLYAAERADITLRLW 546 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q+ ++++RL +R L + + +RG ID ++L+L +AQ Sbjct: 547 QVLKPQLVARGMT--KIYERL------DRPLVEVLARMEERGILIDRQILLRLSGELAQA 598 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NI 270 L+E+I K D + L LF G+ ++ T L Sbjct: 599 ALILEEEIYKQADEKF-NLASPKQLGDILFGKMGLSGGAKTKGGQWSTSAQTLEELAAEG 657 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L + +I R + + L + S GR+ + TGR S QN Sbjct: 658 HVLPRKIIEWRQ-LAKLKSTYTDALPSYIFSKTGRVHTNYSLA-ITSTGRLSSSEPNLQN 715 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R+ IA G L+ AD + IE R+L Sbjct: 716 IP------------------------VRTAEGRKIRTAFIAPKGHVLLSADYSQIELRIL 751 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A IA +AFA G DI+ T ++ F I+ + + R K + Sbjct: 752 AHIADIKALKEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINF------------ 799 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G+ A + + + Sbjct: 800 --GIIYGIS------------------------------AFGLANQLGISRQEAGRYIQL 827 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + G+ + RR+ Sbjct: 828 YFERFPGIKDYMEKTKIFARENGYVETIF--------------------------GRRIH 861 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYD 623 Y ++K + + R +Q + DI+ M K Sbjct: 862 YPEIKAKNVKIRSL---NERAAINAP------IQGSAADIIRRAMIQMENALKEEKLSAK 912 Query: 624 IVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ ++ + ++M P + +PL+ + A+ + Sbjct: 913 MLLQVHDELIFEVPEEESKKTMAVVKNVMENATMPILSLSVPLEVKVMTAQNW 965 >gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23] gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23] Length = 545 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 174/596 (29%), Positives = 265/596 (44%), Gaps = 69/596 (11%) Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANHV 153 V GLP+SL AL ++ K EGKALI FC K + + H Sbjct: 1 MVHGTLLGLPASLDMMSKALRLAQE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHA 58 Query: 154 -QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 + W F EYC++DV R + K++ P + E+ W LDQ I D+G RID+DLV Sbjct: 59 SEKWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAI 118 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + L + LT + L+ +L G + +++ ++ +L+ ++ Sbjct: 119 ACQERYQASLSKKAKGLTGLE--NPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDL 175 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + ++++L R S ++I K + A DGR+RG LQF GA+RTGRW+G + Q QNL Sbjct: 176 DEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNL 235 Query: 331 PRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 PR + + E + + S +R+ IA +G + D + IEA Sbjct: 236 PRNYIKDIAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEA 295 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RV+AW+AGE W++ F + IY + ++ F+ PI++V K R GKV ELALGY GG Sbjct: 296 RVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVN 355 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 M A++ L + + Sbjct: 356 ALIAMG----------------------------------------ALEMGLKENELQGI 375 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + LW+ + + IS R+ L + I LPS R Sbjct: 376 VDAWRKASPAITSLWRGVEKHAKLA------ISTRKSQKYKGLTFYYEAGILFIKLPSGR 429 Query: 567 RLVYSDVK-------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 L Y K Y ++ TYGGKL ENIVQAI+RD L ++ Sbjct: 430 NLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIED 489 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G D V+ VHDE ++E ++ SV L +++ + SWA GLPL+ +G+ + Y K Sbjct: 490 TGIDTVMHVHDEAITEVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 204/692 (29%), Gaps = 133/692 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTE-------QSAMPSDL 57 D ET S +P A + W ++ + + A+ L Sbjct: 387 DTETTSLEP----------RNAELVGIGCCWGEKSTDIAYIPTGHNKGNQLKKEAVLQAL 436 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L + V N+ F+R++F GI++ T + + +L + C Sbjct: 437 KPILESDRYPKVFQNTKFDRLIF-YHQGINLKGV-VFDTLLASYVLHPEMSHNLSDLCYR 494 Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + K K + A+ F K + Sbjct: 495 YLSGITSQSYKELAIPK-----GKTIASLDIETVANYCGLDAYATFLLVSKLKQ--ELKS 547 Query: 174 FKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 F L L + E+ L + + D G RID D + +L + + Q+ +++ + G I Sbjct: 548 FPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQEA-GEI 606 Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF ++ T + L D IL+ S Sbjct: 607 FNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLQGDHPIIDHILDYRTLSKL 666 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L V D + T + TGR S QN+P Sbjct: 667 KSTYVDALPALVRPDTQRVHTNFNQTVTATGRLSSSNPNLQNIP---------------- 710 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R I LV AD + IE R+LA ++ E ++A+ N +D Sbjct: 711 --------IRTEFSRKIRQAFIPQENWLLVSADYSQIELRILAHLSQEVVLLEAYRNNQD 762 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ T F+ + ++ ++R +GK + + Y GA+ F A + Sbjct: 763 VHSVTAKLLFDK--ETITPQERNLGKTINFGVIYGMGAQRFAREA-----GVSAAEGKTF 815 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + M+ + ++G Sbjct: 816 INKYRQRYAKVFDYLERMKKEAIADGFVTTILGRRRY---------------FNFITESL 860 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + + +N A +QL Sbjct: 861 QKLKGSDPE-----------------------------------KINLEVLNINYADAQL 885 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643 +R +Q S DI+ M + ++L VHDE+V E P + Sbjct: 886 LRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQVHDELVFEIPLNEWEE 939 Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M + +PL E + + Sbjct: 940 LQTKIKETMENAVT--LTVPLVVEIHSGNNWM 969 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 204/709 (28%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + A + ++A + + Sbjct: 313 FAFDTETDSLDYMV----------ANLVGMSFAVAEGEAAYIPVAHDYLDAPQQLDRAWV 362 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 363 IAQLKPLLEDESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 420 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + Q +Y D + Sbjct: 421 SLALRFLQHSCISFEQIAGKGKNQL---------------TFNQIDLQEAAQYAAEDADV 465 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L +R+ PL + E L + I G ID L+ + IA Sbjct: 466 TLRLHQRISPLIEQDSKLAQVYSEIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLD 525 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L++ +L G + L+ LF + + T + +L + Sbjct: 526 ELEQKAYELA-GQSFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPL 584 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +++ + + L + ++ + GR+ + + TGR S QN+P Sbjct: 585 PKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 641 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G K++ D + IE R++A ++ Sbjct: 642 ----------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLS 679 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF G+DI+ T A+ PI++VS EQR K + Sbjct: 680 GDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNF--------------GL 725 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + + + Sbjct: 726 IYGMS------------------------------AFGLAKQLGIPRGEAQEYMDKYFER 755 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV+Q +D A + RRL Sbjct: 756 YPGVMQYMEDTRSRAAELGYVETIF--------------------------GRRLHLP-- 787 Query: 574 KGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + N + R +Q + DI+ + M + ++ Sbjct: 788 --EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIQREGDGRVKLL 839 Query: 626 LTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE+V + + LM A +PL AE + Sbjct: 840 MQVHDELVFEVEESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 886 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 109/705 (15%), Positives = 193/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 346 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + I + T + + + + Sbjct: 396 ARLKPWLESADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVVESHRTHDMDSL 453 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID + IA +L Sbjct: 499 QLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIEL 558 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + + +L G + + F + + T + +L Sbjct: 559 EGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 618 LLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 672 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 673 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 712 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ Sbjct: 713 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 758 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A +L + A++ Sbjct: 759 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 788 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q +D RRL ++ G Sbjct: 789 GVAQYMEDTRATAKEKGYVETVF--------------------------GRRLWLPEING 822 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 A R +Q + D++ M + +++ VH Sbjct: 823 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVH 873 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P+ V L +M +PL AE + Sbjct: 874 DELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 198/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 357 FAFDTETDGLDTL----------SANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRSWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE + V N F++ L + GI++ + T + + + Sbjct: 407 LTTLKPLLEDEQALKVGQNLKFDKSLLARY-GIELRGIAF-DTMLESYVLNSVAGRHDMD 464 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + Y D + Sbjct: 465 SLSERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQASPYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + P E L + I G ID ++ + + Sbjct: 510 TLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQSILATHSQELTIRLT 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 570 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + L ++ GR+ + + TGR S QN+P Sbjct: 629 PKVLLEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 686 ----------------------VRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y Sbjct: 724 QDKGLLAAFAEGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMS-----AFGL 778 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q + L G L R Sbjct: 779 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNA 838 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 839 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ------------------ 875 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 876 --------------------AEPLVRVIMQ-------------VHDE---LVFEVH---- 895 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S T+C LM ++ +PLK E K + Sbjct: 896 ----ESVVESATQTICDLMEQSMQ--LDVPLKVEVGVGKNW 930 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 118/705 (16%), Positives = 202/705 (28%), Gaps = 170/705 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + QA + + A + + Sbjct: 375 VAVDTETTSLDEM----------QAKLVGLSMAVAPGVACYIPVAHRGPDGATQLPKDEV 424 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 + L +L D + + H++ ++ +F GI + T + A L + Sbjct: 425 LARLRPWLEDASRAKLLHHAKYDTHVFAN-EGIRLAGIA-EDTMLQAYVLESHRGVGLND 482 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A G Y D + T Sbjct: 483 LAQRYLGRSGVSYEDLCGKGAKQIG---------------FDEVAVDKAGHYAAEDADFT 527 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P E + + TI G ++D + + + QE +L Sbjct: 528 LQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLGQEMLQL 587 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF + +V + T + +LS Sbjct: 588 EQKAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 646 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L ++ D GR+ A TGR + QN+P Sbjct: 647 VLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 701 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR IA G L+ AD + IE R++A ++ + Sbjct: 702 --------------------VRTEAGRRVREAFIAEQG-LLLSADYSQIELRIMAHVSDD 740 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AFA GEDI+ T ++ F + VS EQR K + Sbjct: 741 ANLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINF--------------GLIY 786 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ + + N + A + + A++ Sbjct: 787 GMGVFGLASN------------------------------LGITRDAAQAYIDRYFARYP 816 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV ++ RRL +++G Sbjct: 817 GVAMYMENTRRVAREQGYVETVF--------------------------GRRLQLPEIRG 850 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 R +Q + D++ M K +++ VH Sbjct: 851 ASGPRRQGA---ERAAINAP------MQGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVH 901 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L LM +PL AE K + Sbjct: 902 DELVLEAPDAELELVKQTLPRLMCNVAE--LRVPLVAEVGVGKNW 944 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 782 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 810 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 113/707 (15%), Positives = 208/707 (29%), Gaps = 169/707 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAMPS 55 + ID+ET S P +A I + A D ++ + Sbjct: 324 ISIDLETSSLDP----------HEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLL 373 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 L + L D V N F+ + +K GI+ P T + A +L + Sbjct: 374 RLKELLEDSGTKIVGQNLKFDYEILEKH-GIE-PVVPHFDTMIAAYLLNPDSRRFNLDDL 431 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K + + + +Y D + Sbjct: 432 ALKFLGYRTTSFSELMNKNQLK---------------DQFEKVSVEEAAKYSVEDADIAL 476 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L++ L E +L + + G ++++ + L E + K+ Sbjct: 477 RLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGKIR 536 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 E++ +L + + LF G++ ++ T ++L Sbjct: 537 EELFELAGEPF-NPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPIIQK 595 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L+ L+TL V+ GR+ + G + TGR S QNLP Sbjct: 596 LLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTG-TGTGRLSSSNPNMQNLP----- 649 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 G +R C++ K++ AD + IE RVLA + + Sbjct: 650 -------------------IKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFSED 690 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + I AF NGED++ T ++ + + V+ E R +GK++ ++ Y Sbjct: 691 ERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISP---------Y 741 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 GL A + K+ E + + + Sbjct: 742 GL-----------------------------------ARRLKIKTHIAENMISNYFNAYP 766 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + ++ +R R + Sbjct: 767 GVRKFINEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMK--------------------- 805 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629 + R +Q + DI+ M K +L VH Sbjct: 806 --------IQEGERIAI------NTPIQGTAADIMKLAMIKIHKMVKEEGLEAFPILQVH 851 Query: 630 DEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V E P T V + + M+ +PL+ + + K Sbjct: 852 DELVFEAPATEVDRVCDILTRGMSGVVE--LKVPLEVDVAVNSYWGK 896 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 782 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 810 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 952 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A + Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDVASHYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 119/701 (16%), Positives = 206/701 (29%), Gaps = 154/701 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSAMPSD-----L 57 D ET P A + AW +EP + +P L Sbjct: 382 DTETTDLDP----------RLAQLVGIGCAWGEEPDQLAYIPLGHEEGEQLPLQTVLTAL 431 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 L + N+ F+R++ + GI++ T + + SL Sbjct: 432 RPILESDRHPKALQNAKFDRLIL-RHQGIELAGV-VFDTMLASYLLNPSLGHSLDALADR 489 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L K + A +YC DV + L Sbjct: 490 WLKLQTRSYSDLVPKG------------------KTIAQVAIAAVAQYCGSDVHVVQRLI 531 Query: 175 KRLI------PLSDG-----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P E L + + DRG RID + +L E + E +L+ Sbjct: 532 PLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEG- 590 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLI 278 G + L LF G+++ T ++L DLI Sbjct: 591 AAHTLAGDRFNLGSPKQLSELLFEKLGLNVKKSRKTKTGYSTDAAVLEKLQGDHPIIDLI 650 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + ++ L V++DGR+ + TGR S QN+P Sbjct: 651 LEHCTLAKLKSTYVDALPSLVAADGRIHTDFNQAV-TATGRLSSSNPNLQNIP------- 702 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 S +R + G L AD + IE R+LA ++ E Sbjct: 703 -----------------IRTEFSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVL 745 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++A+ G+D++ T + F ++++ E+R IGK++ + Y GA+ F Sbjct: 746 LEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIYGMGAQRF-----ARETG 798 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 ++ + + ++ ++ Q + ++G + Sbjct: 799 SSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFDFED--------- 849 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 L R I L R + Sbjct: 850 ----------------------------TGLQKLRGSDPESIDLDKIRPSRF-------- 873 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVS 634 +QL+R +Q S DI+ M ++L VHDE+V Sbjct: 874 -----EAQLLRAAANAP------IQGSSADIIKVAMVQLQALLQSYQARMLLQVHDELVL 922 Query: 635 ETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E P + S+ + M + +PL E + + Sbjct: 923 ELPPEEWDSLAPQIQQTMEQAVQ--LTVPLAVELHAGHNWM 961 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 D ET S + A + ++A + +P + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V+ V N ++R + I++ + T + + + Sbjct: 404 LTLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ + IAQ Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + LM + + A +PL E + + Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 193/706 (27%), Gaps = 171/706 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 ID ET + + A + + A+D Sbjct: 348 HFAIDTETTNLD-------YRVA---ELVGFSIAFDANEAYYVPLAHDYEGAPEQLSREQ 397 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 + + + L +E V + H+ ++ +F GI I + T + + + Sbjct: 398 VLAQIKPILENEQVKKIGHHLKYDAHIFANH-GIIIQGW-YFDTMLASYVLNAAATRHGM 455 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ + GK + + ++ Y D Sbjct: 456 DDVARVYLSHLTTTFEQIAGKGAKQ---------------KTFNQIELEVAAHYAAEDAH 500 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L++ L E + + + + G ++D + +L + Sbjct: 501 VTYRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTM 560 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 + L+ +L G + + LF GI + T +SIL Sbjct: 561 QTLENQATELA-GETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEKIEHP-- 617 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPR 332 ++IL + + L E S D R ++ A + TGR S QN+P Sbjct: 618 LAEVILEHRGLAKLKNTYTDRLVEQ-SHDATHRVHTSYHQALTATGRLSSTDPNLQNIP- 675 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G+ L+ AD + IE R++A Sbjct: 676 -----------------------IRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHF 712 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + +D + AF G+D++ T A+ I+ V+ +QR K + Sbjct: 713 SQDDALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNF--------------G 758 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + + + Sbjct: 759 LLYGMSEFGLT------------------------------RQLGFTREESRSYIARYFQ 788 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL + + + RRL D Sbjct: 789 RYPGVLDYMERTRQIAREQG--------------------------FVETILGRRLYTPD 822 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTV 628 + + A R Q + DI+ M K+ ++L V Sbjct: 823 ILATNKMIKQAA---ERAAINAPL------QGSAADIIKLAMIAVDKILPKDQAKLLLQV 873 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E + + +M +P E + + Sbjct: 874 HDELVFEADVAIADELSKQIADVMQSVLE--ISVPFVVEVGQGLNW 917 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 D ET S + A + ++A + +P + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V+ V N ++R + I++ + T + + + Sbjct: 404 LTLLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ + IAQ Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + LM + + A +PL E + + Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 110/696 (15%), Positives = 197/696 (28%), Gaps = 152/696 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + + Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 389 ARLKPWLESVEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446 Query: 113 C-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK I + Y A+ Y + E Sbjct: 447 ALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV-LYPQVAAEK 505 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + D E + + + G ID + + + IA +L+ + L Sbjct: 506 TLQYVYH-----DIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAG 560 Query: 230 GIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 G + + F + + T + +L ++L S Sbjct: 561 GEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEHRGLS 619 Query: 286 GSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L V+ + GR+ A TGR + QN+P Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYAQAVA-VTGRLASNDPNLQNIP------------- 665 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KLV AD + IE R++A I+G++ +++F+ Sbjct: 666 -----------VRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQ 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GEDI+ T A+ F+ +VS +QR + KV+ G+ + Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLAS 760 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 N+ + A +L + A++ GV + + Sbjct: 761 NL------------------------------GITRDAAKLYIDRYFARYPGVARYMDET 790 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 RRL ++ G A Sbjct: 791 RVSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA 824 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 R +Q + D++ M K G +++ VHDE++ E PD Sbjct: 825 ---ERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPD 875 Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM +PL AE + Sbjct: 876 AELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 109/727 (14%), Positives = 199/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQS--- 51 + D ET S A QA + + A D ++ Sbjct: 418 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYVPLVHKNGVG 467 Query: 52 ----------AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 +P L L DE V+ VA N ++ +L K+ I ++ + T Sbjct: 468 DLLGGGLAENQIPMRDALPRLKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDT 524 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 525 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 569 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D E T L+ L P ER L + + RG +D Sbjct: 570 LVDIDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 629 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I + G + L LF G+ ++ Sbjct: 630 RQILSRLSGELAQSAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLSGGSKTKTGQW 688 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L I++ + + L V + + T ++ T Sbjct: 689 STSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTT 748 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ KL+ Sbjct: 749 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPRHKLI 784 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 785 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 844 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 845 --------------GIIYGISAFGLANQLSIE---------------------------- 862 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 863 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 901 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 902 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIKI 945 Query: 618 TKN--------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PL+ + Sbjct: 946 EPALVEVGLADRVRMLLQVHDELIFEVEDEDVEKAMPVIVSVMENATMPALEMRVPLRVD 1005 Query: 667 GYEAKRY 673 A + Sbjct: 1006 ARAATNW 1012 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 113/717 (15%), Positives = 189/717 (26%), Gaps = 178/717 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + D ET S P+ QA + + A Sbjct: 432 FVAFDTETTSLDPM----------QADLVGVSLALAPNEACYIPLAHVGAGDGLFTEGLL 481 Query: 50 QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 +P + L L D + + HN ++ + + GI + + CT ++ Sbjct: 482 PGQIPFNDALAALKGMLEDGGTLKIGHNVKYDAAVLARH-GITVAP--YDCTMCMSYALD 538 Query: 105 LP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + GK + Sbjct: 539 AGRGGHGMDELSIKYLGHTPIAFTEVAGKGKSQ---------------ITFDRVPLEAAT 583 Query: 161 EYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P E R L + + RG ID + +L Sbjct: 584 AYAAEDADVTLRLWRVLKPRLPSEGMTTVYETLERPLIAVLARMEARGISIDRATLARLS 643 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILS 266 AQ +L+++I G + + LF + + T ++L Sbjct: 644 SEFAQGAARLEDEI-SGLAGEKINVGSPKQIGDLLFGKMQLPGATKTPTGAWSTKANVLD 702 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 IL S + L V+ T A+ TGR S Sbjct: 703 ELAEAGHELPQKILAWRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATTTGRLSSSEP 762 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R +A G KLV AD + IE Sbjct: 763 NLQNIP------------------------IRTEEGRRIRRAFVAVPGTKLVSADYSQIE 798 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA IA +AF +G DI+ T ++ F P++ + E R K + Sbjct: 799 LRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINF-------- 850 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 851 ------GIIYGIS------------------------------AFGLANQLGIPRDEAGQ 874 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 K + + G+ + + Sbjct: 875 YIKRYFERFPGIRAYMDETRAYCREHGY--------------------------VETLFG 908 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG 621 RR Y D+ + R Q + DI+ M G Sbjct: 909 RRCHYPDIAASNPSIRAF---NERAAINARL------QGTAADIIRRAMIRMEGALADAG 959 Query: 622 --YDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E PD ++ + +M P+ +PL+ E A + Sbjct: 960 LSARMLLQVHDELVFEVPDAEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNW 1016 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 D ET S + A + ++A + +P + Sbjct: 351 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 400 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V+ V N ++R + I++ + T + + + Sbjct: 401 LALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 458 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 459 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 503 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ + IAQ Sbjct: 504 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 564 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 680 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 718 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 772 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 773 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 824 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 825 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 875 --------------------------MIMQ-------------VHDE---LVFEVH---- 888 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + LM + + A +PL E + + Sbjct: 889 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 923 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 115/719 (15%), Positives = 200/719 (27%), Gaps = 164/719 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ----------- 50 + +D ET P A + W E + + Sbjct: 391 VALDTETSDLNPFK----------AQLVGVGVCWGPELDDLAYIPVGHRPSAEPSLEDSS 440 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + + L +L N+ ++R++ + G+ + + T + Sbjct: 441 AIQQLPLDTVLAQLAPWLASAEHPKALQNAKYDRLILLRH-GLPL-GGVVMDTLLADYLR 498 Query: 104 GL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 L L GKA + Sbjct: 499 DAAAKHGLDAMAERDYGIQPTLFSDLVGKAKDGKAS-------------CFAEVEINQAA 545 Query: 161 EYCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLK 208 YC DV TR L RL+PL D E L + + G RID + Sbjct: 546 LYCGMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAA 605 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKS 263 L +AQ ++L+ + + + L LF G+D T + Sbjct: 606 LSTEMAQTLERLETEAKQAAGMEF-NLASPKQLGELLFDTLGLDRKKSRRTKTGYSTDAT 664 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322 +L L+L S ++ L + V + GR+ + TGR S Sbjct: 665 VLEKLEQDHPVVPLVLEHRTLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSS 723 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P S +R + G +L+ AD + Sbjct: 724 SNPNLQNIP------------------------VRTEFSRRIRKAFLPQAGWQLLSADYS 759 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+L ++GE+ +A+ +G+D++ T V+ ++R +GK + + Y Sbjct: 760 QIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIYG 817 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GA+ F + Q + E + + + + + ++G Sbjct: 818 MGAQRF-----ARETGVSQAQAKEFLSKYKERYPKVFAFLELQERLALSRGYVETILGRR 872 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 L K + I L Sbjct: 873 RPFHFDR-------------------------------------NGLGRLLGKDPLEIDL 895 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 +RR +Q +R +Q S DI+ M Sbjct: 896 EVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALE 936 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E T V L + M + +PL E + Sbjct: 937 QQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQAIQ--LSVPLVVETGVGANWM 993 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 202/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 201/694 (28%), Gaps = 137/694 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQS-------AMPSDL 57 D ET S P+ +A + W + V + + L Sbjct: 381 DTETTSLDPI----------EATLVGIGCCWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L + N+ F+RI+ GI + T + + L + C Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLL-HQGIQLAGV-VFDTMLASYVLRPEDSHKLSDLCHR 488 Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172 N K E + + + A+ F K E + Sbjct: 489 YLENIKSLNYKDLEIPK-----TQTIANLDISRVAHYCGMDAYATFKLVPKLLAELEKAP 543 Query: 173 -LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L+ L E+ L + + + G RID + + + Q+ ++ + G Sbjct: 544 DLYNLL---IKVEQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAA-GE 599 Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + + T + L D IL + Sbjct: 600 SFNLGSPKQLSYILFDKLKLSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEHRTLAK 659 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V GR+ + TGR S QN+P Sbjct: 660 LKSTYVDALPALVHPKTGRVHTDFNQTV-TTTGRLSSSNPNLQNIP-------------- 704 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I G LV AD + IE R+LA + E ++A+ N Sbjct: 705 ----------IKTEFSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLVEAYQNY 754 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D++ T F+ ++ E+R+IGK + + Y GA + A GL +Q+ + Sbjct: 755 QDVHRVTAQLLFDKA--NITSEERSIGKTINFGVIYGMGA---QRFARAFGLSVQEGKE- 808 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + ++ + ++G Sbjct: 809 -FIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGRRRY--------------------- 846 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + P ++ LN + + Sbjct: 847 ----------------------FEFFDDKLNRLRGEKP-------ENLDLKKLELNFSDA 877 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641 QL+R +Q S DI+ M + ++L VHDE+V E P + Sbjct: 878 QLLRAAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVFEVPPHEW 931 Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + + M + +PL E K + Sbjct: 932 EELEVKIKNTMENAVN--LTVPLVVEIRSGKNWM 963 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 108/705 (15%), Positives = 193/705 (27%), Gaps = 170/705 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + I++ T + + + + Sbjct: 393 TRLKPWLESADRKKVGQHLKYDAQVLANY-DIELNGIE-HDTLLESYVVESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID + IA +L Sbjct: 496 QLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIEL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 556 EGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G ++V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVIN--------------FGLIY 755 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + A +L + A++ Sbjct: 756 GMS------------------------------AFGLASNLGITRDAAKLYIDRYFARYP 785 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV Q +D RRL ++ G Sbjct: 786 GVAQYMEDTRATAKEKGYVETVF--------------------------GRRLWLPEING 819 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 A R +Q + D++ M + +++ VH Sbjct: 820 GNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVH 870 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P+ V L +M +PL AE + Sbjct: 871 DELVLEVPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 116/705 (16%), Positives = 204/705 (28%), Gaps = 170/705 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S + QA + + A + + + Sbjct: 332 VALDTETTSLDQM----------QARLVGLSLAVEPGVACYIPVAHRGPDGATQLPKAEV 381 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 + L +L D + + H++ ++ +F GI + T + A L + Sbjct: 382 LARLKPWLEDASRAKLLHHAKYDAHVFAN-EGIALAGIT-DDTMLQAYVLESHRGVGLND 439 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A G Y D + T Sbjct: 440 LAQRYLGRSGISYEDLCGKGAKQIG---------------FDEVAVDKAGHYAAEDADFT 484 Query: 171 RELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P+ E + + TI G ++D + + + + QE +L Sbjct: 485 LQLHHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRL 544 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF + +V + T + +L+ + Sbjct: 545 EQKAYELAGQPF-NLNSPKQLGEILFDRMQLPVVRKTASGAPSTDEDVLTKLALDYPLPQ 603 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L ++ GR+ A TGR + QN+P Sbjct: 604 VLLEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQA-AVITGRLASSDPNLQNIP---- 658 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR IA G L+ AD + IE R++A ++ + Sbjct: 659 --------------------VRTEAGRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDD 697 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 AFA GEDI+ T A+ F + VS +QR K + Sbjct: 698 ANLQSAFAAGEDIHRATAAEVFGVALADVSTDQRRAAKAINF--------------GLIY 743 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ + + N+ + A + + A++ Sbjct: 744 GMGVFGLASNL------------------------------GITRDAAQAYIDRYFARYP 773 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV ++ RRL +++G Sbjct: 774 GVAMYMENTRRLAREQGYVETVF--------------------------GRRLQLPEIRG 807 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 R +Q + D++ M K +++ VH Sbjct: 808 ASGPRRQGA---ERAAINAP------MQGTAADLIKLAMVAVQDWLEAEKLQTRMIMQVH 858 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L LM +PL AE K + Sbjct: 859 DELVLEAPDNEIEVVKEALPRLMCSVAE--LRVPLVAEVGMGKNW 901 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 110/696 (15%), Positives = 195/696 (28%), Gaps = 152/696 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + + Sbjct: 339 SFDTETTSLDPMI----------AQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLPRDEVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 389 ARLKPWLESAGHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSL 446 Query: 113 C-LALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK I + Y A+ Y + E Sbjct: 447 ALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQV-LYPQVAAEK 505 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + D E + + + G ID + + + IA +L+ + L Sbjct: 506 TLQYVYH-----DIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAG 560 Query: 230 GIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 G + + F + + T + +L ++L S Sbjct: 561 GEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKLAEDFPLPKILLEHRGLS 619 Query: 286 GSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L V+ + GR+ A TGR + QN+P Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYAQAVA-VTGRLASNDPNLQNIP------------- 665 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KLV AD + IE R++A I+G++ + +F+ Sbjct: 666 -----------VRTGEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQ 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GEDI+ T A+ F+ +VS +QR + KV+ G+ + Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINF--------------GLIYGMSSFGLAS 760 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 N + A +L + A++ GV + + Sbjct: 761 N------------------------------LGITRDAAKLYIDRYFARYPGVARYMDET 790 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 RRL ++ G A Sbjct: 791 RVSAKAKGYVETVF--------------------------GRRLWLPEINGGNGPRRQAA 824 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 R +Q + D++ M K G +++ VHDE++ E PD Sbjct: 825 ---ERAAINAP------MQGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPD 875 Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM +PL AE + Sbjct: 876 AELSDVRKRLPELMCGVAD--LKVPLVAEVGAGLNW 909 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/693 (17%), Positives = 207/693 (29%), Gaps = 135/693 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE--QSA----MPSDLL 58 D ET S PL A + AW EP V + DLL Sbjct: 401 DTETDSLDPLV----------ANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLL 450 Query: 59 -QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 + L + V N+ F+R + GI++ + T + + +L + C Sbjct: 451 GEILGNAIYPKVLQNAKFDRRVLAHH-GIEL-GGVVLDTMLASYVLQPEETHNLTDLCRR 508 Query: 116 --LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L K K + D P + + + + K E + Sbjct: 509 YNLGLVALSYKDLGLKK-----DQTIADLPLETAGQYCGLDCYATYLLASKLQKELDQ-- 561 Query: 174 FKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + L + + E+ L + + DRG RID D + L + +A+ ++ + G Sbjct: 562 YPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYEAA-GES 620 Query: 233 RSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+D T + L D IL + Sbjct: 621 FNLSSPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEHRTLAKL 680 Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L E V+ R+ + TGR S QN+P Sbjct: 681 KSTYVDALPELVNGQTQRIHTDFNQAV-TSTGRLSSSNPNLQNIP--------------- 724 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 S +R + LV AD + IE R+LA ++ E ++A+ + + Sbjct: 725 ---------IRSDFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQAYGDRQ 775 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T F + ++ +R +GK + + Y GA+ F + Sbjct: 776 DVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGAQRF-----ARETGISAVEGRE 828 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + Q + M+ + ++G Sbjct: 829 FIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRY---------------FNFVTE- 872 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 ++ L DVK +N +Q Sbjct: 873 -ALRQLRGKTVTE----------------------------LDLVDVK-----MNYNDAQ 898 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642 L+R +Q S DI+ M K ++L VHDE++ E P + Sbjct: 899 LLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLLQVHDELIFEMPPEEWE 952 Query: 643 SVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 + L M + + +PL E + + Sbjct: 953 ELAPLIQNTMEQALT--LSVPLVVEMHRGSNWM 983 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 106/717 (14%), Positives = 203/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 373 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 422 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 423 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 480 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 481 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 525 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 526 DADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDTDFLGQLSDEFD 585 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 586 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 644 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 645 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 701 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 702 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 737 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 738 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 784 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 785 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 813 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 814 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 847 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 848 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 898 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E ++G L M + WA +PL E + + Sbjct: 899 QVHDELVFEVDTDKAHNIGNLIKTAMQNALTDTAKKLGWAVDFAVPLVVEIGIGENW 955 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 188/701 (26%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET S L A I ++A + Sbjct: 352 FAFDLETDSLDTL----------SANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N F+R + K+ I++ R+ T + + + Sbjct: 402 LARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRF-DTMLESYALNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + A + Y D + Sbjct: 460 TLASRWLNHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G ID ++ + + Sbjct: 505 TLQLHVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + L+ LF GI + T + +L+ + Sbjct: 565 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA+ +DI+ T A+ F +DKVS EQR K + L Y Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ FE + + ++ + L G L Sbjct: 774 SRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + Sbjct: 826 -PDIKASNAMRRKAAERAAINAPMQGTA-------------------------------A 853 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + L ++ + K+ I+Q +V VH Sbjct: 854 DIIKRAMIAVDRWLEQQPSPEVKM---IMQ-------------VHDE---LVFEVH---- 890 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +LM + +PL+ + + Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 200/701 (28%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 173 FAFDTETDGLDTLSCN----------LIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWV 222 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 223 LATLKPLLEDDKALKVGQNLKFDKSMLARY-GIDLKGIAF-DTMLESYVLDSVAGRHDMD 280 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 281 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 325 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 326 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLD 385 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L+ L+ + ++ + T + +L+ + Sbjct: 386 ELEKQAHELAEEPF-NLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 444 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 445 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 501 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++ AD + IE R++A ++ Sbjct: 502 ----------------------VRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLS 539 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AFA G+DI+ T A+ F +P++KV+ EQR K + L Y Sbjct: 540 QDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMS-----AFGL 594 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L R Sbjct: 595 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 654 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ K +G + + A + + + Sbjct: 655 NRR-----KAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEP----------------- 692 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 693 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH---- 711 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ S + LM ++ A +PLK + + Sbjct: 712 ----ESVLQSAEQKIRELMEQSMQLA--VPLKVDVGVGANW 746 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 101/695 (14%), Positives = 194/695 (27%), Gaps = 144/695 (20%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMP 54 M + + D ET S + L A + A++W+ D+ E + Sbjct: 366 MKQNSVCFDTETTSLKTL----------DAELVGIAFSWESHKGFYVAFPEDQNEAQELV 415 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L + + V N ++ + + + T + ++ Sbjct: 416 EKLRPFFESTEIEKVGQNLKYDIKVLANYK-LKVKG-PLFDTMLAHYIINPDMRHNMNIL 473 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN+S + GK K D T+ A F + E Sbjct: 474 AETYLNYSPQPIEDLIGKKGKR--QKTMRTVSLEDQTQYAVEDADITFQLKTYFEKELKE 531 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + L D E L + + G +D + + E + ++ ++L++ + +G Sbjct: 532 ASNEPLFK--DMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEKSVYVEAEGE 589 Query: 232 IRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF I T + +LS+ +L S Sbjct: 590 F-NIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIVREVLEWRQLSK 648 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + + + T + TGR S QN+P Sbjct: 649 LKSTYVDALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIP--------------- 693 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR + L+ AD + IE R++A ++ E + AF NG Sbjct: 694 ---------IRTERGREVRKAFVPRDENYVLLAADYSQIELRIIAALSQEKTMMNAFKNG 744 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ +T A+ F I++V++ QR+ K + + Y D Sbjct: 745 EDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYG-----VSAFGLSNQTD------- 792 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 L + + + + + + + Sbjct: 793 --------------------------------LTRNESKELIETYYKTYPKLRDYMDEQV 820 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E + RR D+ + +A Sbjct: 821 EFAKEHGYVKTVM--------------------------GRRRYLKDINAKNHIVRSAAE 854 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639 + +Q + DI+ M N ++L VHDE++ + Sbjct: 855 RN---------AVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQVHDELIFDAHKD 905 Query: 640 PYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++ L M +PL E + + Sbjct: 906 EIDALTALVKDKMENAFK--LDVPLDVEMGTGQNW 938 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 111/692 (16%), Positives = 202/692 (29%), Gaps = 143/692 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 + D ET S L +A + ++++ +E Sbjct: 372 KVVCFDTETTSLNEL----------EAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIF 421 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + E ++ VAHN F+ + K+ I + + T + + Sbjct: 422 RPFFEKEDLLKVAHNLKFDYKVLKQY-DITVKGAMF-DTMIAHYLLNPDGRHGMDYLSEV 479 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ + GK + D+ T A F Y + +E Sbjct: 480 YLNYKPVSIETIIGKKGKKQG--NFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENL 537 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E L + + G +D + + + + K L+ I +L+ + Sbjct: 538 EELF--YNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFELSGEEF-N 594 Query: 235 SRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 L LF +D ++ T + +L + IL Sbjct: 595 MNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQKLKS 654 Query: 290 LKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L + D R+ A TGR + QN+P Sbjct: 655 TYVDALPSQIDKDDNRVHTNFSQTTA-ATGRLASVNPNLQNIP----------------- 696 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 L +R ++ GKK++ AD + IE R++A I+GE+ IKAF +GEDI Sbjct: 697 -------IRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQDGEDI 749 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + +T AK F P+ +VSK QR+ K + + Sbjct: 750 HASTAAKLFKIPLAEVSKTQRSQAKTVNFGII---------------------------- 781 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 A + L T + + +A+ + + + + Sbjct: 782 ----------------YGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVNKA 825 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + + R+ D+ + + + Sbjct: 826 RQLGYVETIL--------------------------GRKRHLKDINSNNFVVRGHAERN- 858 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 VQ + DI+ M + ++L VHDE+V E P Sbjct: 859 --------AVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPADEIE 910 Query: 643 SVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 S L M +PL E + Sbjct: 911 SASHLIRTEMENALK--TQVPLLVEIGVGDNW 940 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 111/711 (15%), Positives = 198/711 (27%), Gaps = 156/711 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTE-QSAMPSDL--- 57 + +D ET P A + W + + +P L Sbjct: 397 VALDTETTDLNPFR----------AQLVGIGMCWGPGSDDLAYIPVSHQGDPIPDQLPLE 446 Query: 58 ------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSL 109 +L N+ ++R++ + G+ + + T + L Sbjct: 447 TVLQALAPWLASGEHPKALQNAKYDRLILLRH-GLPLAGV-VMDTLLADYLRDAAAKHGL 504 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 S L GKA + + +YC DV Sbjct: 505 DAMAQRDYGISPTLFSDLVGKAKEGKAS-------------NFSEVPLESAAQYCGMDVH 551 Query: 169 ATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 TR+L L + E L + + G RID+ + L I Sbjct: 552 LTRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTN 611 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT 271 ++L+ + + + L LF G+D T ++L Sbjct: 612 LERLEASAKEAAEIDF-NLASPKQLGDLLFNTLGLDRKKSRRTKTGYSTDATVLEKLEHD 670 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L+L S ++ L + V + GR+ + TGR S QN+ Sbjct: 671 HPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNI 729 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P S +R + +G L+ AD + IE R+L Sbjct: 730 P------------------------VRTEYSRRIRKAFLPQDGWTLLSADYSQIELRILT 765 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++GE+ +A+ +G+D++ T D+VS ++R +GK + + Y GA+ F Sbjct: 766 HLSGEEVLQQAYRDGDDVHALTARLL--LDKDEVSPDERRLGKTINFGVIYGMGAQRF-- 821 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + Q + + + + + + + ++G Sbjct: 822 ---ARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSQGYVETILGRRRPFHFDR- 877 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 L + I L +RR Sbjct: 878 ------------------------------------NGLGRLNGMDPLEINLEVARR--- 898 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624 +Q +R +Q S DI+ M + Sbjct: 899 ----------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQAKLESKNLPARL 942 Query: 625 VLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 +L VHDE+V ET V L M +PL+ E + Sbjct: 943 LLQVHDELVLETEPEALAVVEELVVQTMKNAID--LSVPLEVETGNGANWM 991 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 103/710 (14%), Positives = 202/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + + + Sbjct: 346 YVAVDTETTGLDDMV----------AQLVGVSLCVEPGKACYIPLIHKARGSDDLFGSDD 395 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L D +++ + N ++ +F + LGI++ T +L+ Sbjct: 396 LAEGQIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ-LGINVAP--IDDTMLLSYA 452 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L+ + K + GK+ I D+ Y A+ ++ Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R ++++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQLFKPQLHRVGVT--KVYETL------ERPLVSVLAAMERSGVKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+++I +L + L LF G++ + T +L Sbjct: 565 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDLATE 623 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 624 HDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 682 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 683 P------------------------IRSEEGRRIREAFVAEPGKALVALDYSQIELRILA 718 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF +G DI+ T ++ F P+D+++ + R K + Sbjct: 719 HIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINF------------- 765 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 766 -GVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 794 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ D + R++ Sbjct: 795 FERFPGIRTYMNDTKAFAKEHG--------------------------FVQTLFGRKIHT 828 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVL 626 + + R +Q + D++ M ++L Sbjct: 829 P----EINAKGPRAGFAQRAAINAP------IQGTAADVIRRAMIRMPHAIKDLPATMLL 878 Query: 627 TVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE++ E + +M P + L + + Sbjct: 879 QVHDELLFEVEKGAEDDLIAAARQVMENAADPVVKLDVKLDVDAGVGASW 928 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 106/686 (15%), Positives = 192/686 (27%), Gaps = 137/686 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLL--- 58 + +D ET PL + + A D+ +P+D++ Sbjct: 329 VAVDTETDGLDPLTC----------RLVGVSLAVDEGRACYVPLAAPDVRPLPADVVREV 378 Query: 59 --QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113 L + V V N F+ + ++ G+ P + T V A +L Sbjct: 379 LTPLLASQKVSKVGQNLKFDYHVLRRW-GVR-PEGPFFDTMVAAWLLESDAGRYNLDRLA 436 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K K + ++ Y A+ + + R Sbjct: 437 EKYLGWRTIHYKDVVEKGA-SFETVPVAEAGVYAAEDADIALRLSRVLKERLEAGDLGRV 495 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + + E L + + + G +D + + + + ++ +I L Sbjct: 496 FY-------EMEMPLLSILARMEEWGIGLDGEALSAFGRELDERISNIENEIFDLVGHEF 548 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L+ LF+ G+ V ++ T S+L +L + + Sbjct: 549 -NVGSTKQLQEVLFVERGLPPVKKTKTGFSTDTSVLEELAAQDPVAAKVLEYRSLTKLKN 607 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V+ GRL G + TGR S QN+P Sbjct: 608 TYVDVLPGLVNPETGRLHTWFSQVG-TATGRLSSKDPNLQNIP----------------- 649 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G + AD + IE +LA ++G+ +AF GED+ Sbjct: 650 -------IKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREGEDV 702 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T + F P + V+ EQR I K + + Y L + + Sbjct: 703 HRATGSLLFGVPPETVTPEQRRIAKTINFGVIYGMS-----AFRLSRELGIPRKEAERFI 757 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + F + + + E L G L R K Q Sbjct: 758 NAYFTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKT--------GAE 809 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 V S + +L D+ + A+ Sbjct: 810 RIAVNTPIQGSGADII----------------------KLAMIDLDAQMRRMGLASR--- 844 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 M L VHDE++ E P + L Sbjct: 845 -------------------------MI----------LQVHDELIFEVPPEELEVMKRLV 869 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ E + + Sbjct: 870 RERMEGVVR--LSVPLRVEIGVGRNW 893 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 106/727 (14%), Positives = 198/727 (27%), Gaps = 189/727 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQS--- 51 + D ET S A QA + + A D ++ Sbjct: 401 VAFDTETTSLD----------AMQAELVGFSLAIADNTADPTGTKIRAAYIPLAHKNGVG 450 Query: 52 ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 L L D V+ VA N ++ +L ++ I ++ + T Sbjct: 451 DLLGGGLADNQISMRDALPRLKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDT 507 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANVTFD 552 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 553 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 612 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I + G + L LF G+ ++ Sbjct: 613 RQILSRLSGELAQGAARLEDEIY-VLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 671 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L I++ + + L V ++ + T ++ T Sbjct: 672 STSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAETKRVHTSYSLASTTT 731 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 732 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 767 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 768 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 827 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 828 --------------GIIYGISAFGLANQLSIE---------------------------- 845 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + + G+ + Sbjct: 846 --RSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF------------------- 884 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR+ Y +++ + R +Q + D++ M Sbjct: 885 -------GRRINYPEIRSSNPSVRAF---NERAAINAP------IQGSAADVIRRAMIRM 928 Query: 618 TKNGY--------DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAE 666 ++L VHDE++ E D + S+M P+ +PL+ + Sbjct: 929 EPALAEVGLGDRVRMLLQVHDELIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLRVD 988 Query: 667 GYEAKRY 673 A + Sbjct: 989 ARAASNW 995 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 98/706 (13%), Positives = 201/706 (28%), Gaps = 168/706 (23%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSD 56 + + D ET S L A + ++++ E + Sbjct: 357 LKEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRV 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114 L L + + + N ++ ++ K G+ + R+ T + + +L + Sbjct: 407 LKPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVRF-DTMLASYVLNPDKTHNLDDLAA 464 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L GK ++ + + +Y +D + +L Sbjct: 465 DHLGLETVKYADLVGKG---------------KSEKSIYEVEPKTLSDYACQDADVALQL 509 Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L + E L + + G R+D+ ++ L E + E ++ + Sbjct: 510 KNVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSK 569 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279 I+ G + L LF + T +L + IL Sbjct: 570 -IIYDAAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTGYSTDVRVLEELAESFPVAKQIL 628 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L V GR+ + + A TGR S QN+P Sbjct: 629 EYRSLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIA-ATGRLSSSNPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R + S+ L+ AD + IE R+ A ++G+ Sbjct: 681 -----------------IRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPT 723 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AF N EDI+ TT F D+V+K+ R K + G+ Sbjct: 724 MLGAFQNREDIHSTTAKLIF--ETDEVTKDMRRKAKEVNF--------------GVLYGI 767 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +Q + + + + ++ K+ + Sbjct: 768 MPFGLAQRLD------------------------------ISQAEAKEIISQYKEKYPMI 797 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + + RR D+ Sbjct: 798 FSYLEGILDKARASGYVETLL--------------------------GRRRYIRDLNSKN 831 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATK--NGYDIVLTVHDE 631 + +A R +Q + D++ + M + K ++L VHDE Sbjct: 832 FSIRSAA---ERAAI------NTPIQGTAADMIKKAMLGIASDIHKQSLRSRMILQVHDE 882 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKG---LPLKAEGYEAKRY 673 ++ ++ + L M + A G +P++ E + Sbjct: 883 LLFNMHESEVDILPELVQREMIEAAK-AIGIRNVPIEVEVGTGANW 927 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 108/710 (15%), Positives = 197/710 (27%), Gaps = 174/710 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62 +D ET PL A I + A + + + + L Sbjct: 385 AVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVD 434 Query: 63 -----------DETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLPS--- 107 D+ V+ + HN+ F+ ++ GI + T +++ + Sbjct: 435 AALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISYSQSAGLHGQ 493 Query: 108 SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LN + G + +Y D Sbjct: 494 GMDELSNLHLNHTPITYDSVTGTGRNR---------------VPFAQVPVETATKYAAED 538 Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L+ L P ER L ++ + G +D + +L + Sbjct: 539 ADVTLRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEAR 598 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271 + ++ DI + G + L LF G+ + T S+L Sbjct: 599 MQGMENDIYEAA-GRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQG 657 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 IL + + L D R+ + + TGR S QN+P Sbjct: 658 HDLPARILAWRQLAKLKSTYTDALLRQAGRDDRVHTSF-QMAITSTGRLSSTDPNLQNIP 716 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA +GKKL+ AD + IE R+LA Sbjct: 717 ------------------------VRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLAD 752 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +AF G+DI+ T ++ FN P++ + R K + Sbjct: 753 VANIPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------F 798 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ + + A+ Sbjct: 799 GIIYGIS------------------------------AFGLGKQLGIPAGEARTYIDAYF 828 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ G+ + + E ++ P RR Sbjct: 829 ARYPGIRDYMERMREEARTHGY--------------------------VLTPFGRRCYVP 862 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGY---DI 624 + + R+ Q + DI+ M K G+ + Sbjct: 863 GIHEKSAARRQYA---ERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGATRM 913 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE++ ET ++ +V + +M A +PL E + + Sbjct: 914 LLQVHDELLFETDESDAEAVAEIIKNVMEAAADLA--VPLVVETGIGQNW 961 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 195/710 (27%), Gaps = 166/710 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 L D ET S P+ QA + + A + Sbjct: 389 LAFDTETTSLDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGMVE 438 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L L D +V+ +A N ++ ++ ++ I + + T +++ Sbjct: 439 GQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLDA 495 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + + Sbjct: 496 GTGSHGMDPLSERWLGHTPIPYKDVAGSG---------------KSAVSFDMVDLDRATA 540 Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 541 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSG 600 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 +AQ +++I +L G + L LF + ++ T +L Sbjct: 601 DLAQAAAAYEDEIYELA-GERFNIGSPKQLGDILFGKMSLSGASKTKTGQWSTSAQVLED 659 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 I++ + + L ++ + + T ++ TGR S Sbjct: 660 LAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLSSSDPN 719 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G KLV AD + IE Sbjct: 720 LQNIP------------------------VRTAEGRKIRTAFIAEPGNKLVSADYSQIEL 755 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 756 RVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG---- 811 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L + + + FE + + + + E + + G Sbjct: 812 -ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYP 870 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 RA + V +G + R A + Sbjct: 871 DI--RASNPQVRAFN---ERAAINAPIQGSAADIIRRAMIRMEDALAE------------ 913 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 Q ++ + Sbjct: 914 ------------------------------------QNLAA----RMLLQVHDE------ 927 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E PD + +M P+ + +PL + A + Sbjct: 928 -----LIFEVPDNEVEKTIPVVRHIMENAAMPAVSLAVPLHVDARAAHNW 972 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 102/712 (14%), Positives = 196/712 (27%), Gaps = 184/712 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 D ET S P+ QA + + A Sbjct: 380 YFAFDTETTSLDPM----------QAKLVGFSLALQPGKAAYIPLEHTAGEDGLLAGGRI 429 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 + L L ++ ++ + N ++ ++ K+ DI + + T +L+ Sbjct: 430 VPQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---DIVMRSFDDTMLLSYALE 486 Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L K GK +++ + Sbjct: 487 AGISTHGIDVLSERWLGHKPITYKDLTYNGKKIVSF-----------------AQIDLKQ 529 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L++ L P +R L + + +RG +D ++ + Sbjct: 530 ATLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSR 589 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264 L +AQ L+E+I +L G + L LF G+ ++ T Sbjct: 590 LSGELAQAALNLEEEIYQLV-GERFNIASPKQLGDILFGKMGLPGGAKTKNGQWSTSAQT 648 Query: 265 LSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322 L + I++ + + L + + GR+ + TGR S Sbjct: 649 LEELATEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLAT-TSTGRLSS 707 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R+ IAS G L+ AD + Sbjct: 708 SEPNLQNIP------------------------ARTAEGRKIRAAFIASEGHILLSADYS 743 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA A +AF G+DI+ T ++ F ++ + + R K + + Y Sbjct: 744 QIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYG 803 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + L + Sbjct: 804 -----ISSFGLANQL---------------------------------------GISRKE 819 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + G+ + Sbjct: 820 AGNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIF------------------------ 855 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 RR+ Y ++K + R +Q + DI+ M Sbjct: 856 --GRRIHYPEIKTANPQIRAF---NERAAINAP------IQGSAADIIRRAMIQVENALE 904 Query: 618 -TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKA 665 K ++L VHDE++ E + + + +M P+ + +PL+ Sbjct: 905 KEKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVMENATMPALSLSVPLEV 956 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 98/702 (13%), Positives = 193/702 (27%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57 S L +D ET S P+ A + ++A +++ E + + Sbjct: 348 SILSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 + ++ V N ++ + G+ + K + T + L ++ Sbjct: 398 KPIYENPDILKVGQNLKYDLEVLHNY-GVTLKGKMF-DTMLAHYVIQPELRHNMDYMAET 455 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ G P ++ + EY D + T +L Sbjct: 456 LLNYRTIHIDELIG--------------PRGKNQKSMRELDPKEVYEYAAEDADITLQLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L E L + I G ID D + + ++ + + + +I Sbjct: 502 NVLETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 +L + + LF I + ++ T + +L IL Sbjct: 562 YQLAGEEF-NISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L + ++ G + + + TGR S QN+P Sbjct: 621 EYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQA-ITATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G +R C I G AD + IE RV+A ++ + Sbjct: 673 -----------------VRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G DI+ T AK + PI++V++++R K + Y G+ Sbjct: 716 IEAFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIY--------------GIT 761 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +Q + + + + + + V Sbjct: 762 TYGLAQRLDIDN------------------------------REAKELIEGYFETFPQVY 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + RR D+ + Sbjct: 792 EYMERAKADARAKGYAETLFH--------------------------RRRYLPDINSHNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632 + + +Q + DI+ M ++L VHDE+ Sbjct: 826 TVRGYAERN---------AINAPIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ + Sbjct: 877 NFSVYPDEKEKVERIVLEEMQNAYP--LRVPLVADAGWGSNW 916 >gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886] gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886] Length = 931 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 182/701 (25%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S + +A + ++A + + Sbjct: 354 VAFDTETDSLDYM----------EANLVGISFAVAEGEAAYLPLAHDYLDAPKQLDRDWV 403 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 +++ +L D + V N ++ + + I + + T + + + Sbjct: 404 LAEMKLWLEDAGALKVGQNLKYDASVLARY-DIAMRGIAY-DTMLESYVFNSVAGKHDMD 461 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + Y D + Sbjct: 462 SLALRYLQHQCISFEEIAGKGKKQL---------------TFNQIELDQAAPYAAEDADV 506 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L L+ E L + + G I +++ K + IA Sbjct: 507 TLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISAEMLAKQSQEIAVRLD 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 L++++ +L + L+ LF G+ + T + +L + Sbjct: 567 TLEKEVFELAGEEF-NLSSPKQLQAILFEKMGLPVVKKTPSGTPSTNEEVLQELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL + + L + V GR+ + + TGR S QN+P Sbjct: 626 PKRILEYRGLAKLKSTYTDKLPKMVKPATGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA GK ++ D + IE R++A ++ Sbjct: 683 ----------------------IRNEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ I AF +G+DI+ T A+ I V+ E R K + L Y Sbjct: 721 GDEALIDAFRHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E + + G L Sbjct: 776 AKQLGIPRGEAQQYMDRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +G +++ P R Sbjct: 828 -PEIKSSNAMRRKGAERAAINAPMQGTAADIIKRAMILV---DAWIQQQPEGR------- 876 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +VL Sbjct: 877 ------------------------VALIMQ-------------VHDE---LVL------- 889 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E V +C LM +PL A+ + Sbjct: 890 -EVDTEHLAEVEQQVCKLMESAA--LLDVPLVADSGSGANW 927 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 112/707 (15%), Positives = 192/707 (27%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYL- 61 ID+ET S PL A I A + + P L + L Sbjct: 316 FAIDLETTSLNPL----------DASIVGYAVSCLAHEAYYIPIGHRYLGAPEQLPEALV 365 Query: 62 --------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 D + N ++ + ++ G+++ W T + A + L Sbjct: 366 LELLGPLLTDPDRKKIGQNLKYDYQVLQQ-SGVELAGI-WCDTMLAAYLVNPSRNSQGLD 423 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ G C G Y D +A Sbjct: 424 ALALEYLDHRMISYAEVAGTG---------------KCELNFSEVDLDRAGPYSCEDADA 468 Query: 170 TRELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L+P D E L + + G ++D++L+ +L ++ + Sbjct: 469 TYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIE 528 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274 L+ I + G + L LF G+ + ++ T L Sbjct: 529 LEAKIHEHCGGSF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEV 587 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + S + L V GR+ + + TGR S QN+P Sbjct: 588 ARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYNQA-ITNTGRLSSSDPNLQNIP-- 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 G +R IA G ++ AD + IE RVLA ++ Sbjct: 645 ----------------------VRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ +AFA GEDI+ T A+ F + V+ E R Sbjct: 683 GDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQA--------------------- 721 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + A + + + + + + Sbjct: 722 -----------------------KVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFER 758 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H G + RRL ++ Sbjct: 759 HSGARSFLDRCIAEAETCG--------------------------FVTTILGRRLQIPEI 792 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 + T +Q + DI+ M K +++ Sbjct: 793 ASKNGNARAFAQRN---------ATNYPIQGSAADIIKAAMIRVTRRMLEEKVASRLIMQ 843 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P + L M +PLK + + Sbjct: 844 VHDELVFEVPRNERELMEDLVRAEMEGALP--LSVPLKVDLNFGLNW 888 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 96/702 (13%), Positives = 186/702 (26%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSDL---L 58 + ID ET S + A + +++ ++ + + Sbjct: 349 FVSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYIRIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 ++ ++ + N ++ + G+ + + + T + L ++ Sbjct: 399 PLYENDKILKIGQNIKYDYKVLNNY-GVTLQGEMF-DTMIAHYLIQPELHHNMDYMAETL 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + + EY D + T L Sbjct: 457 LGYRTIHIEELIGPKGKKQKNMRDLSPTDIC---------------EYAAEDADITLRLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G +D + + + + K+ +++I Sbjct: 502 HLLEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 K G + + LF I D ++ T + +L IL Sbjct: 562 YKEA-GETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N ++ L + ++ G + + + TGR S QN+P Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQ-TATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I +G AD + IE R++A ++G++ Sbjct: 673 -----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF G DI+ T AK ++ IDKV+ QR K G+ Sbjct: 716 MEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQAN--------------FGIIYGI- 760 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + + + + V Sbjct: 761 -----------------------------TTYGLAQRMGIPNGEARELIQDYFHTFPKVK 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E RR D+ + Sbjct: 792 AYMEQAKETARAKGYAETLFH--------------------------RRRYLPDINSRNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 T R +Q DI+ M K ++L VHDE+ Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ + Sbjct: 877 NFSVYPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 106/694 (15%), Positives = 202/694 (29%), Gaps = 151/694 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + D ET S + +A + ++++ E A+ Sbjct: 365 VCFDTETTSLDEM----------EAELIGISFSYKKGLAYYVPIPENRAEAQAIVERFRP 414 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + E+++ +AHN ++ + GI++ T + + L Sbjct: 415 FFEKESILKIAHNLKYDYKVLLNY-GIEVTG-NLFDTMIAHYLLNPDGRHGMDYLSEMYL 472 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ + GK + + +Y D + T +L++ Sbjct: 473 NYKPIALETLIGKKGKGQ--------------KTLREIDLPTQTQYAAEDADITFQLYEI 518 Query: 177 LIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P E L + + G +D + + + Q+ K L+ I + Sbjct: 519 FSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGVALDEEWLKDESISLEQDLKILEGQIFE 578 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNR 281 + L LF +D T + +L + LIL Sbjct: 579 QAGEEF-NINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKHEIIKLILEY 637 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L +S DGR+ + A TGR + QN+P Sbjct: 638 RQLQKLKSTYVDALPNQISPIDGRVHTSFAQTVA-ATGRLASNNPNLQNIP--------- 687 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR +A G K+V AD + IE R++A I+GE+ IK Sbjct: 688 ---------------IRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIK 732 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF G+DI+ +T +K F+ P+++VSK QR+ K + + Y A L Sbjct: 733 AFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQS-----AFALADQTGLS 787 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + S +E + + ++ + + ++G L + + Sbjct: 788 RTDAKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHL---------KDINSN 838 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + +L + + Sbjct: 839 NFVVRGHAERNAVNAPIQGSAADII---------------------KLAMIKIDSEIKA- 876 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 Q + ++L VHDE+V E P+ Sbjct: 877 ----------------------QGL---------------KTKMLLQVHDELVFEVPNEE 899 Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 T + M ++ +PL E + Sbjct: 900 IEVATTLIKQEMETA--YSTKVPLLTEVGVGDNW 931 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 105/697 (15%), Positives = 192/697 (27%), Gaps = 152/697 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----S 55 + ID ET P A + + A +P Sbjct: 341 RFAIDTETTGLNP----------RHAKLVGISVATAPGRAAYVPLGHEDGPQLPRPLALE 390 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L D +++ + HN+ F+ + ++ G+ + T +++ T G + Sbjct: 391 RLAPVLADPSILKIFHNAKFDLHVLERA-GLA-DATPVDDTMLMSYTLGAGRHGHGMDEL 448 Query: 113 CL-ALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ G + Y A+ L + EA Sbjct: 449 SALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLR-PRLRTEA 507 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L++ + ER L + + G +D + + A+ + +I + Sbjct: 508 ALALYETM------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREI-EKLA 560 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI-TQLAKDLILNRLAS 284 G + L LF G+ ++ T ++L +L Sbjct: 561 GRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQL 620 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + D R+ + + TGR S QN+P Sbjct: 621 QKLKSTYADALVGEIDIADQRVHTSFSQA-ITTTGRLSSNEPNLQNIP------------ 667 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA+ GK L+ AD + IE R+LA +A ++FA Sbjct: 668 ------------IRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFA 715 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 GEDI+ T A+ F P++ + R K + G+ Sbjct: 716 KGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYGIS----- 756 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + + + + A+ A++ + + + Sbjct: 757 -------------------------AFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNE 791 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 E ++ P RR + Sbjct: 792 TAEFARTHGY--------------------------VLTPFGRRCYVPGITEKNPARRGY 825 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 R+ Q + DI+ M ++L VHDE+V E P Sbjct: 826 A---ERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAP 876 Query: 638 DTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L C++M S +PL E + Sbjct: 877 KDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 911 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 D ET S + A + ++A + +P + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE ++ V N ++R + I++ + T + + + Sbjct: 404 LALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ + IAQ Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 721 RDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRKEQPRVR------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + LM + + A +PL E + + Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 106/710 (14%), Positives = 195/710 (27%), Gaps = 174/710 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62 +D ET PL A I + A + + + + L Sbjct: 353 AVDTETDGLDPLA----------ANIVGFSIATAPGKACYVPLKHEGTLEAPTGEQLAVD 402 Query: 63 -----------DETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLPS--- 107 D+ V+ + HN+ F+ ++ GI + T +++ + Sbjct: 403 AALKLLAPLLQDDAVLKIFHNAKFDLLILD-HAGIPLSSITAVDDTMLISYSQSAGLHGQ 461 Query: 108 SLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + + L+ + G +Y D Sbjct: 462 GMDELSAMHLSHTPISYDSVTGTGRNRL---------------PFAQVPVATATKYAAED 506 Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L+ L P ER L + + G +D + +L + Sbjct: 507 ADVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEAR 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT- 271 + ++ DI + G + L LF G+ + T S+L Sbjct: 567 MQGMENDIYEAA-GRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTDSSVLQDLADQG 625 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 IL + + L + R+ + + TGR S QN+P Sbjct: 626 HDLPARILAWRQLAKLKSTYTDALLRQAGRNDRVHTSF-QMAITSTGRLSSTDPNLQNIP 684 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA GKKL+ AD + IE R+LA Sbjct: 685 ------------------------VRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLAD 720 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A +AF G+DI+ T ++ FN P++ + R K + Sbjct: 721 VANIPALREAFQLGQDIHARTASEVFNIPLEGMDALTRRRAKAIN--------------F 766 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ + + A+ Sbjct: 767 GIIYGIS------------------------------AFGLGKQLGIPAGEARTYIDAYF 796 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A++ G+ + + E ++ P RR Sbjct: 797 ARYPGIRDYMERMREEARTHGY--------------------------VLTPFGRRCYVP 830 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGY---DI 624 + + R+ Q + DI+ M K G+ + Sbjct: 831 GIHEKSAARRQYA---ERQAINAPL------QGGAADIIKRAMVHLPLALQKAGFGETRM 881 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE++ ET ++ +V + +M A +PL E + + Sbjct: 882 LLQVHDELLFETDESEAEAVAAIIKNVMEAAADLA--VPLVVETGIGQNW 929 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 D ET S + A + ++A + +P + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE ++ V N ++R + I++ + T + + + Sbjct: 404 LALLKPLLEDEKLLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ + IAQ Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRKEQPRVR------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + LM + + A +PL E + + Sbjct: 892 ----KDELDAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 198/701 (28%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 D ET S + A + ++A + +P + Sbjct: 354 FAFDTETDSLDNI----------SANMVGLSFAVEPGVAAYVPVAHDYLDAPDQIPRERV 403 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V+ V N ++R + I++ + T + + + Sbjct: 404 LALLKPLLEDEKVLKVGQNLKYDRGILANY-DIELRGIAF-DTMLESYILDSVAGRHDMD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 462 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 506 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ + IAQ Sbjct: 507 TLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLV 566 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 567 ELEQRAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMS-----AFGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 776 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 828 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDEWLRSEKPRVR------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 878 --------------------------MIMQ-------------VHDE---LVFEVH---- 891 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + LM + + A +PL E + + Sbjct: 892 ----KDELNAVSKKIHELMENSTTLA--VPLLVEVGSGENW 926 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 98/701 (13%), Positives = 193/701 (27%), Gaps = 164/701 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + D ET A A + +++ + + Sbjct: 368 ISFDTETTGTD----------ANLAELVGLSFSIKPGEGYYIPVPAEMEAAQQIVEEFRP 417 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 L +E ++ + N ++ ++ K GI + R T + ++ L Sbjct: 418 VLENENIVKIGQNIKYDMLILKWY-GISVKG-RLFDTMLAHYLIDPDTRHNMDVLSENYL 475 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+S G ++ + +Y D + T +L Sbjct: 476 NYSPISITTLIGPKGKSQG--------------TMRDVPVEKVVDYAAEDADITLQLANV 521 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 PL + E L + I G RID+D ++ + + + +K ++ + Sbjct: 522 FEPLLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQSVYD 581 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNR 281 + L LF +D ++ T + +L IL+ Sbjct: 582 KCGIKF-NLASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDILDF 640 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L V+ GR+ + A TGR S QN+P Sbjct: 641 RQLQKLKSTYVDALPLLVNPKTGRVHTSFNQAVA-ATGRLSSNNPNLQNIP--------- 690 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR I L+ AD + IE R++A I+ E+ + Sbjct: 691 ---------------IRTERGREVRKAFIPRDENHILLSADYSQIELRIIADISKEENML 735 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF NG DI+ T A+ + I++V+ QR Sbjct: 736 DAFKNGIDIHTATAARVYGIAIEEVTPTQRRNA--------------------------- 768 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +A + + + + + + + ++ G+ + Sbjct: 769 -----------------KAVNFGIIYGQSAFGLSQNLGIPRKEAAEIIEQYFTQYPGIKR 811 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 D + RR D+ Sbjct: 812 YMSDTMNFARENG--------------------------FVETILGRRRYLRDINSANQ- 844 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633 T R +Q + D++ M N K + + VHDE+V Sbjct: 845 --TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELV 896 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + ++ + M +P++ E E + + Sbjct: 897 FDVLKSEVEAMKKIIAHRMKTAIK--TTVPIEVEIGEGENW 935 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 106/720 (14%), Positives = 189/720 (26%), Gaps = 184/720 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 + ID ET + + + A + +++ Sbjct: 352 IIAIDTETDNLEGMK----------ANLCGISFSIVPGKAYYVPVGHGQTDLSLDDPEHS 401 Query: 53 -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 L L D +++ V N ++ ++ ++ DI + T +L+ Sbjct: 402 QQMSEATALDILKPVLLDPSILKVGQNLKYDLLILRER---DIDVVGYDDTMLLSYAADC 458 Query: 106 P----SSLKNACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L K GK D+ Sbjct: 459 GFASLHGMDELSKRHLGHEPIPYKEIVGTGKKQKTFGDVPIKDAYI-------------- 504 Query: 159 FGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L L +R L + + G ++D D + Sbjct: 505 ---YAAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSA 561 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSI 264 L AQ + + + G + + LF G+ ++ T Sbjct: 562 LSGEFAQRMAAHEAAVHDIA-GERFNLASPKQIGDILFGKLGLPGGKKTKTGAWSTAADT 620 Query: 265 LSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 L IL+ + + LSE++ GR+ + ++ TGR S Sbjct: 621 LETLAADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHTSFSLA-STTTGRLSS 679 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R I +G L+ AD + Sbjct: 680 NDPNLQNIP------------------------IRTEDGRKIREAFIPEDGNVLISADYS 715 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA IA I+AF G DI+ T A+ F P++ + R K + Sbjct: 716 QIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAIN------ 769 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ A + Sbjct: 770 --------FGIIYGIS------------------------------AFGLARNLGIGRDE 791 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 L K + + G+ + EG + Sbjct: 792 ASLFIKRYFERFPGIKAYMDETIEGARVHGY--------------------------VET 825 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 RR ++K + R+ +Q + DI+ M Sbjct: 826 LFGRRSHTPNIKAKQPNIR---MGAERQAINAP------IQGSAADIVKRAMIRVPAALA 876 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + ++L VHDE+V E P L +M P+ + +PL E + + Sbjct: 877 AHRLSAKMLLQVHDELVVECPADQADETAAVLKDVMEGAAGPALSLSVPLVVEAGQGASW 936 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 111/693 (16%), Positives = 200/693 (28%), Gaps = 134/693 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQS-------AMPSDL 57 D ET P + + W D + + + L Sbjct: 385 DTETTGLDP----------REVDLVGIGCCWGRDPGNIAYIPIAHHNGNQLEKTQIFQAL 434 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L E V N+ F+R +F GI + T + + +L + L Sbjct: 435 KPILETEKYPKVFQNAKFDRAIFA-HQGISLAGV-VFDTMLASYVLHPEMKHNLTDLSLR 492 Query: 116 L--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 N K + D + + + + ++ + Sbjct: 493 YLGNIIAKSYKDLGLTKK-----QTIADLEISVAAEYCGLDVYTTYLV--CQKLKVELKD 545 Query: 174 FKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + L L + E L + + + G RID D + +L E + + L+ D Sbjct: 546 YPDLEKLLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYNAADERF 605 Query: 233 RSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ T ++L D IL + Sbjct: 606 -NLNSPKQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLAKL 664 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L VS R+ + TGR S QN+P Sbjct: 665 KSTYIDALPTLVSPKTDRIHTDFNQT-LTSTGRLSSSNPNLQNIP--------------- 708 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 S +R I LV AD + IE R+L ++ E ++A+ GE Sbjct: 709 ---------VRTEFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILLQAYQAGE 759 Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D++ T F+ V+ +R IGK++ + Y GA + A G+ ++ Sbjct: 760 DVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGA---QRFAREAGVSKEEGRA- 815 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 E + + + ++ Q ++ + Sbjct: 816 -FIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQRRRNFDFIS---------------- 858 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 L+ + I L S L Y+ + Sbjct: 859 ---------------------NCLIELKGSDPKAIDLDS---LDYA----------YNDA 884 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641 QL+R +Q S DI+ M + ++L VHDE+V E P + Sbjct: 885 QLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELVFEMPPEEW 938 Query: 642 FSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + M + +PL + + K + Sbjct: 939 EELGSKIKTTMEQAVP--LSIPLVVDIHCGKNW 969 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 204/700 (29%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 355 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRDWV 404 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + I++ + T + + + Sbjct: 405 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-DINLRGIAF-DTMLESYVLNSVAGRHDMD 462 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 463 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 507 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID +++ + + Sbjct: 508 TLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQNILAAHSKELTIRLD 567 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 568 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 626 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L +S GR+ + + TGR S QN+P Sbjct: 627 PKVILEYRGLAKLKSTYTDKLPLMISPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 684 ----------------------VRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLS 721 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++KV+ EQR K + L Y Sbjct: 722 QDKGLLAAFAAGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMS-----AFGL 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q + L G L + R Sbjct: 777 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNA 836 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + + + + Sbjct: 837 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQEPEPKVRV----------- 880 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH E V Sbjct: 881 ---------------------------IMQ-------------VHDE---LVFEVH-ESV 896 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 897 LESTE------QKVRELMEQSMQLA--VPLKVDIGVGDNW 928 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 98/703 (13%), Positives = 186/703 (26%), Gaps = 161/703 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + ID ET S + A + ++A ++ Sbjct: 354 KCIAIDTETDSLDYMV----------AHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQ 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 S L L + + V N ++ +F + GI++ + T +L+ ++ Sbjct: 404 TALSLLKPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + + EY D + Sbjct: 462 DELAKRYLGHQTIHFEDIAGKGKAQL---------------TFNQIPLEQAAEYAAEDAD 506 Query: 169 ATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + I G ID D + + I Sbjct: 507 ITMKLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 L++ +L G + T L+ LF + + T + +L Sbjct: 567 TALEQQAYELA-GQQFNLASTKQLQEILFDKLSLPVLKKTPKGAPSTNEEVLEELAYEHA 625 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ S + L V+ D GR+ + + TGR S QN+P Sbjct: 626 LPKILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAV-TATGRLSSSDPNLQNIP- 683 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G +++ AD + IE R++A + Sbjct: 684 -----------------------IRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHL 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AF G+DI+ +T A+ F P+ +VS EQR K + L Y + Sbjct: 721 SQDKGLINAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMS-----SFG 775 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + F+ + ++ +++ L L Sbjct: 776 LSRQLGIPRHEAQKYMDLYFQRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYL------- 828 Query: 513 KHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + +A + + + R Sbjct: 829 --PDIQSSNAIRRKAAERVAINAPMQGTAADIIKRAMITLDREIA--------------- 871 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + M Sbjct: 872 ---------GQPD-------------------------IKMIM-QVHDE----------- 885 Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +V E T+ M + +PL + K + Sbjct: 886 LVFEVRTDKIEHFRTIIKTTMEQAAQLV--VPLIVDVGVGKNW 926 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 103/706 (14%), Positives = 187/706 (26%), Gaps = 163/706 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET S P+ A + + + + + Sbjct: 353 IVAIDTETTSLDPML----------AQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQ 402 Query: 51 ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-- 105 + + +L D + + ++ +F G+ + T + + Sbjct: 403 LSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANH-GVALRGIA-HDTMLESYVLASYR 460 Query: 106 PSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + + L + + GK EY Sbjct: 461 NHGMDSLAERLLSLKTITYEEVCGKGANQIG---------------FDQIDLPRATEYAA 505 Query: 165 RDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L +++ P + E + ++ Q I G ID D + + Sbjct: 506 EDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAEL 565 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSN 269 L+ + + LF + +V + T + +L Sbjct: 566 GLRMMDLERAAHDAAGQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQKLA 624 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+L+ S + L + V+ + GR+ + A TGR + Q Sbjct: 625 DDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATA-VTGRLASTDPNLQ 683 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R IA+ G +V AD + IE R+ Sbjct: 684 NIP------------------------VRTEEGRRIREAFIAAPGNVIVSADYSQIELRI 719 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A I+G++ ++AFANGEDI+ T + F + VS EQR KV+ L Y Sbjct: 720 MAHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMS---- 775 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 L +++ + F + + + E + + G L Sbjct: 776 -AFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWL--- 831 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + +L Sbjct: 832 ------PDINGGNGPRRQAAERAAINAPMQGTAADLI---------------------KL 864 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 V+ T Q I+Q +VL Sbjct: 865 SMIAVQDWLEGERLGTRQ--------------IMQ-------------VHDE---LVL-- 892 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM + +PL AE + Sbjct: 893 ------EVPQAELELVRVKLPELMCAVAT--LNVPLVAEVGSGANW 930 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 112/698 (16%), Positives = 195/698 (27%), Gaps = 153/698 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 +L ID ET S P+ A + + Sbjct: 315 QLAIDTETTSLDPIR----------ADLVGFSLCVSPGLAYYAPLAHDWPADEPQAPRRQ 364 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSL 109 L Q L D ++ + N ++ + ++ G+ + T V L Sbjct: 365 ALDLLGQALADPGLLKIGQNLKYDLNVLRRA-GLSVAG-PLFDTMVADYLLNPAKASHGL 422 Query: 110 KN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + A L + G + PY A+ K D Sbjct: 423 EAIAAEHLGRGVIGFEEAVGGKGKGFAQAPPERAVPYAAEDADVALQAAQA-LGPKLDEA 481 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 R LF L E L L + G ID + + +L + Q ++ I L Sbjct: 482 DLRRLFDEL------EMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAGEQKIYALA 535 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLA 283 + T L LF G+ V ++ T S+L+ +L A Sbjct: 536 GHEF-NINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLPAEVLAYRA 594 Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ ++ L ++ D GR+ + + TGR S QN+P Sbjct: 595 NAKLKSTYVDALPALINPDTGRVHTSFNQCV-TATGRLSSSDPNLQNIP----------- 642 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 G +R C + + G+ LV AD + IE RVLA ++ + ++ Sbjct: 643 -------------VRGELGRRMRGCFVPAPGRLLVSADYSQIELRVLAHLSQDPLMLQDM 689 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 A G D++ T A+ F+ V++E R K + + Y Sbjct: 690 AEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMS------------------ 731 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + E + + ++QGV + + Sbjct: 732 --------------------------AFRLAREQGVSRAEAEDIIARYLGRYQGVARFQQ 765 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + RR + S Sbjct: 766 QNLSQCRQRGYVTTIL--------------------------GRRRFLPAI---NSSDRQ 796 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 A R +Q + DI+ M + ++L VHDE+V ET Sbjct: 797 AREAAERVA------LNTPIQGSAADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFET 850 Query: 637 PDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ + M + LK + + + Sbjct: 851 PEGGVEQFAQAVRRCMEDVLK--LDVELKVDVGWGRDW 886 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 97/702 (13%), Positives = 185/702 (26%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPS---DLL 58 + ID ET S + A + +++ ++ + Sbjct: 349 FVSIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 ++ ++ + N ++ + G+ + K + T + L ++ Sbjct: 399 PLYENDNILKIGQNIKYDYEVLNNY-GVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETL 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + + EY D + T L Sbjct: 457 LGYRTIHIEELIGPKGKKQKNMRDLSPTDIC---------------EYAAEDADITLRLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G +D + + + + K+ +++I Sbjct: 502 HLLEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 K G + + LF I D ++ T + +L IL Sbjct: 562 YKEA-GETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N ++ L + ++ G + + + TGR S QN+P Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQ-TATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I +G AD + IE R++A ++G++ Sbjct: 673 -----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF G DI+ T AK ++ IDKV+ QR K G+ Sbjct: 716 MEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQAN--------------FGIIYGI- 760 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + + + + V Sbjct: 761 -----------------------------TTYGLAQRMGIPNGEARELIQDYFHTFPKVK 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E RR D+ + Sbjct: 792 AYMEQAKETARAKGYAETLFH--------------------------RRRYLPDINSRNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 T R +Q DI+ M K ++L VHDE+ Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ + Sbjct: 877 NFSVYPEEREQVERIVIEEMQNACQ--LNVPLTADAGWGSNW 916 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 101/709 (14%), Positives = 192/709 (27%), Gaps = 174/709 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + + A + ++A + Sbjct: 349 FAFDTETTSLRYMA----------AEVVGVSFAVQPFEAAYVPFCHDYMGAPEQLDRDTV 398 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGL---PSSL 109 + L L V N +++ + DI + T V + ++ Sbjct: 399 LAQLKPLLESPDHKKVGQNLKYDKNVLANH---DICLEGIAEDTMVQSYVLNSVSSRHNM 455 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + G Y D + Sbjct: 456 DALALHYLGEETTTFESLAGKGAKQL---------------TFNQLELDKAGPYAAEDAD 500 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D + L + + RG I + + + +A+ Sbjct: 501 ITLRLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERM 560 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 +L+ + G + L++ + G+ + T + +L Sbjct: 561 AELETAAYEAA-GETFNLGSPKQLQVIFYEKLGLPVLKKTPKGAPSTAEPVLQELAHRHE 619 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L+L + S +TL E + GR+ + + TGR S QN+P Sbjct: 620 LPRLLLEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAV-TATGRLSSSEPNLQNIP- 677 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G KL+ AD + IE R++A + Sbjct: 678 -----------------------IRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHL 714 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + AFA GEDI+ T A+ F +++V+ +QR K + Sbjct: 715 SEDKGLLTAFAKGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINF--------------G 760 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 761 LIYGMS------------------------------AFGLARQLDVERKVAQQYIDRYFE 790 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GVL ++ + + RRL + Sbjct: 791 RYPGVLTYMDNIRKQAHEDGY--------------------------VETLFGRRLYLPE 824 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIV 625 + + R +Q + DI+ M + + + Sbjct: 825 I---NTRNKQLQQAAERTAINAP------MQGTAADIIKLAMIEVERWLLAEYPDSARMT 875 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + VHDE++ E + V L M+ A +PL E + Sbjct: 876 MQVHDELIIEVKEEAVEVVREGLIKRMSGAAELA--VPLLVEAGVGDNW 922 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 193/701 (27%), Gaps = 138/701 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50 + +D ET S P+ A + +E + Q Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQLS 431 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + S + ++ D NS F+R +F G+D+ + T + Sbjct: 432 IEEVFSKIRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L F K GK K + + + F Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIDEASVYCGYDVFLTFKIVKIFK 543 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + E + + + E L + + G ID+ + KL + + + ++ + + Sbjct: 544 ERFSMEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281 L +G + L LF +D T +L ++ Sbjct: 604 LAEGNF-NLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQYLIKH 662 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + KL+ AD + IE R+LA +A E+ I Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +DI+ T F +++S ++R +GK + + Y G K A G+ Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 E + + + + G E Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 L K I L S+RR Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q +R +Q S DI+ M K ++L VHDE++ Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQINKKFIEMNVPAKMLLQVHDELLF 934 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E + + M +PL + + Sbjct: 935 EVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 98/707 (13%), Positives = 188/707 (26%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQY-- 60 D ET + + A + ++A + P L + Sbjct: 346 FAFDTETDALDAMR----------ANLVGLSFAIEPGHADYLPLGHDYPGAPVQLDRVQA 395 Query: 61 -------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L D V + ++ + ++ G+ + T + + + Sbjct: 396 LAALAPLLEDPAKRKVGQHGKYDLHVLRRH-GVQVHGYA-DDTMLESFVLNSTASRHDMD 453 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + + GK A A Y D + Sbjct: 454 SLAKRYLGYDTVKYEDVAGKGAKQ---------------IAFSQVAIDDATGYAAEDADI 498 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L + E L + I G +D+ + K ++++Q Sbjct: 499 TLRLHRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAELRKQSQVLSQRML 558 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 + V L G + L+ LF + T + L Sbjct: 559 AAQQKAVALA-GRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEEALEAIADQHEL 617 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L E V+ GR+ + GA TGR S QN+P Sbjct: 618 PRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGA-ATGRLSSSDPNLQNIP-- 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G+KL+ D + IE R++A ++ Sbjct: 675 ----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLS 712 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AF+ G D++ T A+ F +++VS +R K + Sbjct: 713 EDPGLLRAFSQGVDVHRATAAEVFGRTLEQVSANERRAAKAIN--------------FGL 758 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + + ++ Sbjct: 759 MYGMS------------------------------AFGLARNLGIGRGEAQDYVALYFSR 788 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V + + E + RRL +D+ Sbjct: 789 YPAVRDFMERMREQARTQGY--------------------------VETLFGRRLYLNDI 822 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 L R +Q + DI+ M + + ++L Sbjct: 823 NAKQQGLRAGA---ERAAINAP------MQGTAADIIKRAMVSVDTWLQDHRARALMILQ 873 Query: 628 VHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + M +PL + + Sbjct: 874 VHDELVFEVDADFVEILLPEVTWRMAAAAE--LKVPLVVDSGVGDNW 918 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 108/710 (15%), Positives = 202/710 (28%), Gaps = 166/710 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QS------- 51 + +D ET + A + A + Sbjct: 349 YVAVDTETTGLDEMR----------ADLVGICLATEPGLACYVPLGHKAAEGEGLFATED 398 Query: 52 ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L DE ++ + N ++ + K+ GID+ T +++ Sbjct: 399 LAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRC-GIDVAPC--DDTMLISYA 455 Query: 103 NGLP---SSLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L+ + K GKA+I + Y A+ ++ Sbjct: 456 LNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMITFDKVPIDKATRYAAEDADVTLRL 515 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ+ T +++ L ER L + + G ++D D + ++ AQ Sbjct: 516 WQVLKPQLHAKKVTT--VYETL------ERPLAPVLAKMEMHGIKVDRDTLSRMSSAFAQ 567 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I +L G + L LF G++ + T +L Sbjct: 568 KMGALEAEIHELA-GERFNVGSPKQLGEILFDKMGMEGGKKGKTGAYATGADVLEDLATL 626 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S ++L + GR+ + Q GA+ TGR + QN+ Sbjct: 627 HELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGAN-TGRLASTDPNLQNI 685 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA GK L+ D + IE R+LA Sbjct: 686 P------------------------VRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILA 721 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF G+DI+ T ++ F P+++++ E R K + Sbjct: 722 HIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAIN-------------- 767 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A ++ + + Sbjct: 768 FGVIYGISGF------------------------------GLARNLRIPRAEAQGFIDRY 797 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + TE + RR+ Sbjct: 798 FERFPGIKDYMAETTEFGKKNGY--------------------------VQTLFGRRIHT 831 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVL 626 + R +Q + DI+ M ++L Sbjct: 832 P----EIDAKGPRAGFARRAAINAP------IQGTAADIIRRAMIRMPDAILGLPAKMLL 881 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK--GLPLKAEGYEAKRY 673 VHDE+V E + V + +M A +PL + + + + Sbjct: 882 QVHDELVFEVDEAAADEVAEVARGVMETAADPAVRIDVPLVVDAGQGRNW 931 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 95/698 (13%), Positives = 191/698 (27%), Gaps = 155/698 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 + D ET + ++ + + D+TE + + Sbjct: 377 KSVCFDTETTGLDMFTS----------DLVGMSFCFAEGEAYYVSLPEDKTESKEVLREF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 + ++ + + N F+ ++ GI++ K T + L + Sbjct: 427 KAFFENDRIEKIGQNMKFDLLML-WQYGIELKGK-LFDTMIAHYLVQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LN+ + G K + + D Y D + T L Sbjct: 485 YLNYRTIHFEDLVGAKGKNQADIRTVDINKLCD---------------YAAEDADVTFRL 529 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L + E L + T+ G RID + + + ++ E KL+++ Sbjct: 530 KQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLKLEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLI 278 I +L + + LF + T + IL I Sbjct: 590 IHQLAGYEF-NVSSPMQVGEILFDRLKLDDKAKKTKTGQYSTSEDILEKLQSKHPIIGKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ ++ L + +S G++ + A TGR S QN+P Sbjct: 649 LDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVA-ATGRLSSTNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I AD + IE R++A ++G+ Sbjct: 702 ------------------IRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF +G DI+ T AK + P+++V+ + R K + Y L Sbjct: 744 MLEAFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISV-----FGLSDRL 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + F + + + + E + L+G L + Sbjct: 799 SIPRAEAKELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + +A + + + ++ Sbjct: 850 NSQNSIVRGFAERNAINAPIQGTAADIIKIAMVRIQN----------------------- 886 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +L +QA M VHDE+ Sbjct: 887 -------------------RLENESLQA------KMTM------------QVHDELNFTV 909 Query: 637 PDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P ++ + M +PL A+ + Sbjct: 910 PKNELEALQKAVIEEMENAIK--LQVPLIADCGVGANW 945 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 105/697 (15%), Positives = 192/697 (27%), Gaps = 152/697 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----S 55 + ID ET P A + + A +P Sbjct: 318 RFAIDTETTGLNP----------RHAKLVGISVATAPGRAAYIPLGHEDGPQLPRPLALE 367 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L D +++ + HN+ F+ + ++ G+ + T +++ T G + Sbjct: 368 RLAPVLADPSILKIFHNAKFDLHVLERA-GLA-DATPVDDTMLMSYTLGAGRHGHGMDEL 425 Query: 113 CL-ALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ G + Y A+ L + EA Sbjct: 426 SALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLR-PRLRTEA 484 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L++ + ER L + + G +D + + A+ + +I + Sbjct: 485 ALALYETM------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREI-EKLA 537 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI-TQLAKDLILNRLAS 284 G + L LF G+ ++ T ++L +L Sbjct: 538 GRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAASGHDLPVRVLEWRQL 597 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + D R+ + + TGR S QN+P Sbjct: 598 QKLKSTYADALVGEIDIADQRVHTSFSQA-ITTTGRLSSNEPNLQNIP------------ 644 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA+ GK L+ AD + IE R+LA +A ++FA Sbjct: 645 ------------IRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFA 692 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 GEDI+ T A+ F P++ + R K + G+ Sbjct: 693 KGEDIHARTAAEVFGLPMEGMDPMVRRRAKAINF--------------GIIYGIS----- 733 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + + + + A+ A++ + + + Sbjct: 734 -------------------------AFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNE 768 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 E ++ P RR + Sbjct: 769 TAEFARTHGY--------------------------VLTPFGRRCYVPGITEKNPARRGY 802 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 R+ Q + DI+ M ++L VHDE+V E P Sbjct: 803 A---ERQAINAPL------QGGAADIIKRAMVRLPAAIRDAGLDAVMLLQVHDELVFEAP 853 Query: 638 DTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L C++M S +PL E + Sbjct: 854 KDQAEATAKLACAVMQGAAS--LSVPLLVETGIGANW 888 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 194/707 (27%), Gaps = 165/707 (23%) Query: 8 IETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 IE S PL A+ +A I + Sbjct: 345 IEKCSSAPLFGLQTFTSSAHYMEAQIVGISLCVAAGDACYIPLLHDYPDAPEQLNSQWAL 404 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L L++ V HN F++ + GI + + T + + ++ Sbjct: 405 EQLTPLLKNSKNQKVGHNLKFDKNVLANH-GITLNGVAY-DTMLESYVLNSVVTKHHIEA 462 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK + + + + Sbjct: 463 LSLHYLGHSPITLESIAGKGAKQL---------------TFNQIGLAEAAPFAAENADII 507 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E L + + G ID + + + +A+ Sbjct: 508 LRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILH 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAK 275 L+E + ++ G + T L+ LF + + T + +L + Sbjct: 568 LEETVHEMA-GEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPSTGEEVLQELALNYPLP 626 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I+ + + L + + GR+ + Q + TGR S QN+P Sbjct: 627 KAIMEYRGLTKLKNTYTDKLPKLIDHRTGRVHTSYQQA-ITATGRLSSTDPNLQNIP--- 682 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR IA G K+V AD + IE R++A ++ Sbjct: 683 ---------------------IRTEEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSS 721 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFANG D++ T ++ F ++ V+ EQR K + Sbjct: 722 DSGLLHAFANGLDVHKATASEVFGVALEHVTSEQRRSSKAINF--------------GLI 767 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + + + + ++ Sbjct: 768 YGMS------------------------------AFGLAKQLNIPRGDAQHYMDTYFERY 797 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVLQ +D E RRL ++ Sbjct: 798 PGVLQYMQDTREEAKAQGYVKTVF--------------------------GRRLYLPEIT 831 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627 + +Q + DI+ M + +++ Sbjct: 832 SSNGARRAGAERAA---------INAPMQGTAADIIKLSMLAVDNWIQTQDQSDICMIMQ 882 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E + + + LM S A +PL E + + Sbjct: 883 VHDELIFEIKEQKVDAYSTKIIELMENAVSLA--VPLTVEFDVGENW 927 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 110/712 (15%), Positives = 198/712 (27%), Gaps = 162/712 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ----------- 50 + +D ET S P QA + W + + Q Sbjct: 392 VALDTETTSLNPF----------QAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPL 441 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSS 108 + L +L N+ ++R++ + G+ + + T + Sbjct: 442 DQVLGALAPWLSSAAHPKTLQNAKYDRLILLRH-GLPLAGV-VMDTLLADYLRDANAKHG 499 Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L+ F K YC DV Sbjct: 500 LELLAQRNFGFLPTSYSELVPKGAN------------------FSAVPMAQAALYCGMDV 541 Query: 168 EATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 T L L + E L + + G RID D + +L + Sbjct: 542 HVTYRLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKA 601 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270 ++L+ D + + L LF G+D T ++L Sbjct: 602 TLERLESDAKEAAGTDF-NLASPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLED 660 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L S ++ L + + GR+ + TGR S QN Sbjct: 661 AHPVVPLVLEHRTLSKLKSTYVDALPALMEAETGRVHTDFNQAV-TATGRLSSSNPNLQN 719 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P S +R + G L+ AD + IE R+L Sbjct: 720 IP------------------------VRTEFSRRIRKAFLPEAGWTLISADYSQIELRIL 755 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++GE+ +KA+ +G+D++ T F+ D+V+ ++R +GK + + Y G + F Sbjct: 756 AHLSGEEVLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLGKTINFGVIYGMGVQRF- 812 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + Q + + + + + + + ++G Sbjct: 813 ----ARETGVSQAEAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFAFD- 867 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 L K + I L +RR Sbjct: 868 ------------------------------------PSGLGRHLGKDPLEIELEVARR-- 889 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYD 623 +Q +R +Q S DI+ M + Sbjct: 890 -----------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQQRLTESALPAR 932 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E +V L M + + +PL E + Sbjct: 933 LLLQVHDELVLEAAPEALETVLNLTRETMERAVT--LSVPLVVETGVGPNWM 982 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 102/717 (14%), Positives = 199/717 (27%), Gaps = 178/717 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 + +D+ET + + + + A + Sbjct: 337 RVIAVDVETDALSAVAS----------RLVGVSLATAPNEACYIPLGHEGGDLADGGMKP 386 Query: 52 ------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 L L ++ ++ V N ++ +F++ + + T +++ Sbjct: 387 DQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRY---GVRVAPYDDTMLISYVQAA 443 Query: 106 P---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G + + E Sbjct: 444 GLHNHGMDELAERHLGHTCISFKEVCGTGKSQ---------------KRFSEIDLKTATE 488 Query: 162 YCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L ER L + + G ++D+ + +L Sbjct: 489 YAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSRLSS 548 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267 AQ+ + +E KL + + LF G+ ++ T ++L Sbjct: 549 DFAQKMAEAEETAHKLAGTKF-NLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAAVLDE 607 Query: 268 SNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVF 325 +L S + L +A++ + GR+ + A+ TGR S Sbjct: 608 LAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLA-ATTTGRLSSSEP 666 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R A G +V AD + IE Sbjct: 667 NLQNIP------------------------IRTEEGRKIREAFTAEPGHVIVAADYSQIE 702 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA IA + +AF G+DI+ T ++ F P++ + R K + Sbjct: 703 LRLLAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAIN--------- 753 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ A + + Sbjct: 754 -----FGIIYGIS------------------------------AFGLANNLGIGRDEAKS 778 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 ++ K G+ + + Sbjct: 779 YIDSYFKKFPGIKDYMDAMKDEAKAKGCVSTIF--------------------------G 812 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG 621 RR+ +K + T R+ +Q + DI+ M + G Sbjct: 813 RRIHLPGIKDKNPSVRQFT---ERQAINAP------IQGAAADIIRRAMVRMPGALSDAG 863 Query: 622 Y--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ V L +M+ P+ +PL+ E A + Sbjct: 864 LKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQNLSVPLEVEAKAASTW 920 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/717 (14%), Positives = 201/717 (28%), Gaps = 180/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET + A + + + D Sbjct: 370 YFAIDTETT----------DINWQHAKLVGISVSTADYEGYYIPVGHTADFDVLLDNQLP 419 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + S L + + + + ++ +FKK GI+I + T + + Sbjct: 420 IDTVLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISPWQM-DTMLASYVINAAATR 477 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L + GK + A +Y Sbjct: 478 HGMDALAKHYLGVQTTTFEDVAGKGAKQL---------------SFDKVAMDAASQYACE 522 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T LF R + E + + G ID D + +L + Sbjct: 523 DADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDTDFLGQLSDEFD 582 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNI 270 ++ L + ++ D + L LF GI ++ T +++LS Sbjct: 583 KKIMALQIEAERIADEPF-NLASPKQLGEILFDKLGIAGGKKTKTGQYATSEAVLSKIEH 641 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + D++L + S +TL+ A GR+ + + TGR S QN+ Sbjct: 642 PLI--DVVLEHRSLSKLKSTYTDTLANAADEQGRVHTSYHQA-LTSTGRLSSSDPNLQNI 698 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G+ ++ AD + IE R++A Sbjct: 699 P------------------------IRTDTGRLIREAFIAPKGRMILAADYSQIELRLMA 734 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +G++ I+AF + DI+ T A+ I +V+ +R K + Sbjct: 735 HFSGDESLIRAFNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNF------------- 781 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ ++ ++ + K + Sbjct: 782 -GLLYGMSAFGLAKQIEVDRAV------------------------------AQDYIKRY 810 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ +L+ + + + R+L Sbjct: 811 FARYPAILEYMERTKTMAKQLGYVQTIL--------------------------GRKLYS 844 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVL 626 D++ + A R Q + +I+ M K+ ++L Sbjct: 845 PDIQSSNRMIKDAA---ERAAINAPL------QGSAAEIIKLAMIAVDEVLPKDDAKLLL 895 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-------WAKG--LPLKAEGYEAKRY 673 VHDE+V E +G L M + WA +P E + + Sbjct: 896 QVHDELVFEVDTDKAHDIGNLIKTAMQNALTDTAKKLGWAVDFAVPFVVEIGIGENW 952 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 108/674 (16%), Positives = 200/674 (29%), Gaps = 125/674 (18%) Query: 26 EQAVITLCAYAWDDEP--VKLWDRTEQS-------AMPSDLLQYLRDETVMCVAHNSLFE 76 QA + W ++P + + + L L + V N+ F+ Sbjct: 7 RQADLVGIGCCWGNQPTDIAYIPIGHKQGNQLKKQKVLDSLRTILESKNYPKVFQNTKFD 66 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLAL--NFSEHLTKME-EGKAL 131 R++FK GI++ T + + L C + K GK Sbjct: 67 RLIFK-HQGINLDGV-VFDTMLASYVLHPEKSHKLSELCEQYLEGITSQNYKELGIGKKQ 124 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 D + A+ F E +++ L + E+ L + Sbjct: 125 ------TIADLEIDKVAEYCGMDAYATFLLVEPLKNEL-KQVSSLEKLLLEVEQPLEAVL 177 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + D G ID + + +L + + ++ L+E ++ G + L LF + Sbjct: 178 SIMEDTGILIDTEYLGELSKQLEKDLLILEEKAYEVAGGKF-NLGSPKQLGEILFEKLEL 236 Query: 252 DLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRL 305 + T + L D IL S ++ L E V R+ Sbjct: 237 NRKKSRKTKTGYSTDHATLDKLKGDHPIIDYILEYRTLSKLKSTYIDALPELVDTKTKRI 296 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + TGR S QN+P S +R Sbjct: 297 HTNFNQSV-TATGRLSSSNPNLQNIP------------------------IRTEFSRQIR 331 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 I LV AD + IE R+LA ++ E + A+ N ED++ T F +K++ Sbjct: 332 QAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF--EKEKIT 389 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 ++R +GK + + Y G++ F A + + + + + M Sbjct: 390 SQERNLGKTINFGVIYGMGSQRFAREA-----GVTAAEGKEFINKYRQRYAKVFEYLESM 444 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + + ++G + + +I ++ Sbjct: 445 KKEAIANGYVTTILGRRRY---------------FNFFDDNLYRFRGHDPQTIDLNQL-- 487 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 +N SQL+R +Q Sbjct: 488 ---------------------------------NINYNDSQLLRAAANAP------IQGS 508 Query: 606 SRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKG 660 S DI+ M + +++L VHDE+V E P + + + M Sbjct: 509 SADIIKIAMVKIQEILNHCQANLLLQVHDELVFEIPVKEWEKLENKIKETMENAVK--LT 566 Query: 661 LPLKAEGYEAKRYR 674 +PL E + K + Sbjct: 567 IPLVVEIHAGKNWM 580 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 352 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 402 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 460 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 504 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 505 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 565 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 679 --------------------VRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 824 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 886 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 114/700 (16%), Positives = 202/700 (28%), Gaps = 154/700 (22%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMP 54 M + + D ET PL A + A++W+ E + Sbjct: 370 MKQTSVCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPEDQDQAQELI 419 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L + DE + + N ++ + +K I I + T + ++ Sbjct: 420 EQLRPFFEDEKIEKIGQNLKYDIKVLRKYNLI-IKG-AYFDTMLAHYLINPDMRHNMDVL 477 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN++ GK + + EY D + T Sbjct: 478 AETYLNYTPISITELIGKKGKNQLS--------------MRQVPIEKQTEYAVEDADITY 523 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L P D E L + + G +D+D + L E + + K L+ Sbjct: 524 QLASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLE 583 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKD 276 I + + L LF + D ++ T + +LS+ Sbjct: 584 TSIYEAAGEEF-NIASPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIK 642 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL + ++ L + V GR+ A TGR S QN+P Sbjct: 643 NILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP---- 697 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 VR + L+ AD + IE R++A ++ Sbjct: 698 --------------------IRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSD 737 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 E I+AF NGEDI+ +T +K FN P+D+V++EQR+ K + + Y Sbjct: 738 ETTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVS-----AFGLS 792 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 DL + + +E + + + + + D + ++G L R Sbjct: 793 NQTDLSRGESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAV 852 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + ++ ++ Sbjct: 853 ---------VRSAAERNAVNAPIQGSAADII---------------------KIAMINIH 882 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + N T ++L VHDE+V Sbjct: 883 KKLTGGNFKTK--------------------------------------MLLQVHDELVF 904 Query: 635 ETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + T V L M S A +PL E + Sbjct: 905 DAHKTELEEVRALIKTEMENAYSLA--VPLDVEIGTGDNW 942 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 97/712 (13%), Positives = 196/712 (27%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 406 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 455 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 456 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 512 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 513 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 557 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 558 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 617 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 618 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 676 Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + ++ R + + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLLRKIVDWRQ-LTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSD 735 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R+ IA G KL+ AD + I Sbjct: 736 PNLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQI 771 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 772 ELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG-- 829 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + + FE + + + + E + + G Sbjct: 830 ---ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGR--- 883 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + + + A Sbjct: 884 ------RTHYPDIRASNPQVRAFNERAAINAPIQGAAADII------------------- 918 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 R ++ + N ++ + Sbjct: 919 --RRAMIRMEDALAKEN-----------------------LAA----RMLLQVHDE---- 945 Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 946 -------LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 990 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 100/704 (14%), Positives = 200/704 (28%), Gaps = 162/704 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET S A+QA + ++A + A+ Sbjct: 381 IAFDSETTSID----------AQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAV 430 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V ++ ++ + I + + T + + + Sbjct: 431 LNALKPILEDPAKAKVGQHAKYDINVLANASTPIMVQGVAF-DTMLESYVLDSTATRHDM 489 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + LN S + GK A + G Y D + Sbjct: 490 DSLALKYLNHSTIRFEDIAGKGAKQL---------------TFDQIALEQAGPYAAEDAD 534 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L + E L + I G +D L+ + + ++ Sbjct: 535 VTLRLHQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKL 594 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQ 272 +L+ ++ + L + L+ G ++ + T +++L+ Sbjct: 595 VELERKAFEIAGEEF-NLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDY 653 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +++ + S + L E ++ GR+ + A TGR S QN+P Sbjct: 654 ELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVA-ATGRLSSSDPNLQNIP 712 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A G KL+ AD + IE R++A Sbjct: 713 ------------------------IRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAH 748 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ + AF D++ T A+ F P+D+V+ +QR K + L Y Sbjct: 749 LAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMS-----AF 803 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 +D+++ F + ++ + Q E + + G L Sbjct: 804 GLAKQIDVERKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYL------ 857 Query: 512 AKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + + +G + +A + + + +D I Sbjct: 858 ---PEIHAQNQAMRKGAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGID--------- 905 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 +R I +VL Sbjct: 906 -----------------------------------ARII-----LQVHDE---LVL---- 918 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + V L SLM+ +P+ E + Sbjct: 919 ----EVREELINEVSAKLKSLMSGAAD--LDVPMLVEVGVGANW 956 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 102/691 (14%), Positives = 203/691 (29%), Gaps = 140/691 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 + D ET S L +A + A++W+ D+TE + Sbjct: 367 KSVCFDTETTSLNAL----------EAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPF 416 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + + + HN ++ + + I + T + ++ Sbjct: 417 KAFFEHPEIEKIGHNLKYDLKVLRNY-DIHVK-APLFDTMIAHYLINPDMRHNMDILAET 474 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--TRE 172 LN+S GK + + EY ++ T E Sbjct: 475 YLNYSAQSITELIGKKGKNQGTMREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLE 534 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L++++ E L + + G +D+ + L +A++ +KL+ I ++ G Sbjct: 535 LYQKV------ELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVA-GEN 587 Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF + D ++ T + +LS+ IL+ + Sbjct: 588 FNLASPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDILDWRSLQKL 647 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L ++ GR+ A TGR S QN+P Sbjct: 648 QNTYVDALPNEINPKTGRVHTIYNQAVA-ATGRLSSNNPNLQNIP--------------- 691 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR I L+ AD + IE R++A ++G++ + AF N Sbjct: 692 ---------IRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGMLSAFQNN 742 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T +K FN P+++V++EQR K + + Y +L + Sbjct: 743 EDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVS-----AFGLSQQTNLNRSEAK 797 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + S+ D + ++G R + + + Sbjct: 798 ELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGR---------RRYLKDINSQNAIVR 848 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + +N Sbjct: 849 GAAER-----------------------------------------------NAVNAPIQ 861 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPYFS 643 KL +Q + ++L VHDE+V + P + Sbjct: 862 G---SAADIIKLAMIAIQ-----------NRLENKNWKSKMLLQVHDELVFDVPKEEINT 907 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M +PL + + Sbjct: 908 LQEMVKKEMENAFE--INVPLIVDIGIGNNW 936 >gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108] gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108] Length = 952 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 94/701 (13%), Positives = 191/701 (27%), Gaps = 163/701 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 L ID ET +P+ +A + +++ + E + ++L Sbjct: 381 ILSIDTETTGTEPM----------EAELVGMSFSDAENQAYYVPVPPIREEALKIVNELR 430 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E + V N ++ I+ + I + T + L ++ Sbjct: 431 PLYENEKSLKVGQNIKYDMIVLQNYE-IQVKG-PLFDTMLAHYVLQPELRHNMDYLAEIY 488 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ G P + + + Y D + T +L Sbjct: 489 LHYQTIHIDELIG--------------PRGKNQKNMRDLSPEEVYRYACEDADVTLKLKN 534 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E L + I G R+D + + + E ++++++I Sbjct: 535 ILEKELKEQGGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIY 594 Query: 226 KLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 L D + + LF T + +L IL Sbjct: 595 ALADETF-NIASPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILE 653 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 +++L + ++ G + + + TGR S QN+P Sbjct: 654 YRGLKKLLSTYIDSLPQLINPRTGHIHTSFNQAV-TATGRLSSSNPNLQNIP-------- 704 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I +G + AD + IE R++A ++ + I Sbjct: 705 ----------------IRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMI 748 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF +G DI+ T AK + T I V+ + R K G+ + Sbjct: 749 DAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANF--------------GIIYGISV 794 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ + + + + + V + Sbjct: 795 FGLAER------------------------------MNVSRQEAKELIDGYFETYPQVKE 824 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 R+ D+ + Sbjct: 825 YMDRSIRIARENGYVETIFH--------------------------RKRFLPDINSRNAV 858 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 + R +Q + DI+ M + + ++L VHDE+ Sbjct: 859 VRGYA---ERNAINAP------IQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELN 909 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P + V + M ++ +PLKA+ K + Sbjct: 910 FSVPASEKEIVQKIVIEEMEHA--YSMHVPLKADCGWGKNW 948 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 105/705 (14%), Positives = 195/705 (27%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L DET V + ++ +F GI + T + + Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK A EY Sbjct: 464 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 508 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G +D + + + + Sbjct: 509 DADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELG 568 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q L+++ L + + F + +V + T + +L Sbjct: 569 QRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 627 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 628 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 686 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 687 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 722 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++G+D ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 723 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 777 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 778 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 833 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + Sbjct: 834 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 875 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +G + T R ++Q +VL Sbjct: 876 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 902 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM S +PL AE + Sbjct: 903 -----EVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 940 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 118/720 (16%), Positives = 202/720 (28%), Gaps = 167/720 (23%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------- 50 + + ID ET + P A + W + + Sbjct: 385 LKPVAIDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAALLDA 434 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 A+ + +L N+ ++R++ + G+ + + T + Sbjct: 435 DAACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALEGV-VMDTLLADYL 492 Query: 103 NGL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L+ + GK A Sbjct: 493 RDAAAKHGLEVMAEREFKITPTGFSELVGKGQ------------------TFADVAIPTA 534 Query: 160 GEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVL 207 YC DV TR L RL + E+ L + + G RIDL + Sbjct: 535 SLYCGMDVHLTRRLAIRLRAQLENMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLK 594 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262 +L + +KL++ + G+ + L LF G++ T Sbjct: 595 ELSIELGNTLEKLEQQAQEAA-GVNFNLASPKQLGELLFETLGLNRKKSRRTKTGWSTDA 653 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 ++L L+L S ++ L + V S GR+ + TGR S Sbjct: 654 NVLEKLEADHPVVPLVLEHRVLSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLS 712 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P S +R + KL+ AD Sbjct: 713 SSNPNLQNIP------------------------IRTEFSRRIRKAFLPQENWKLLSADY 748 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+L ++GE+ +AF NG+D++ T D+VS+++R +GK + + Y Sbjct: 749 SQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFGVIY 806 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GA+ F L Q + + + + + + + L+G Sbjct: 807 GMGAQRF-----SRSTGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLGR 861 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 L K + I Sbjct: 862 RRPFHFDR-------------------------------------NGLGRLLGKDPMDID 884 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 L +RR +Q +R +Q S DI+ M Sbjct: 885 LDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQL 925 Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E T V L M K +PL E + Sbjct: 926 TAADLPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKAVE--LSVPLVVETGTGDNWM 983 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 105/691 (15%), Positives = 196/691 (28%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + ID ET S P+ +A + + + + + Sbjct: 331 VSIDTETTSLNPM----------EAELVGLSLCTEPGHAAYIPLAHHYQGVPSQLNREQV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 L +L + + V N ++R +F G+ + T + + L L + Sbjct: 381 LQRLKPWLENSDIPKVGQNLKYDRHVFANH-GVMLNGIA-HDTLLQSYVLESHLSHDLDS 438 Query: 112 ACLA-LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L+ GK I + Y A+ F Y + Sbjct: 439 LARRHLDIQTISYDDVTGKGAKRIGFEQVEIQQAGIYAAEDADIPLRLHHF-LYPIISKD 497 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 A E L + I G +D DL+ + +A++ L++ Sbjct: 498 A-----HLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQAH-SL 551 Query: 229 DGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 G + T ++ LF + + T + +L + ++L+ + Sbjct: 552 AGRAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVLQQLALDYPLPKILLDYRSL 611 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + ++ L + V+ GR+ A TGR + QN+P Sbjct: 612 AKLRSTYIDKLPQMVNRQTGRVHTNYAQAVA-VTGRLASNDPNLQNIP------------ 658 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G ++ AD + IE R++A I+ + I+AF Sbjct: 659 ------------VRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFL 706 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G+DI+ T A+ F + +V+ EQR KV+ L Y L + + + Sbjct: 707 GGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMS-----EFGLATQLGIDRSA 761 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + ++ + + ++G +L + + Sbjct: 762 ARAFIDRYFARYPGVADYMQRTRELARQNGYVETVLGRRLQL---------PDIRSSQHN 812 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 G +L V Sbjct: 813 RRMGAERAAINAPMQGTAADII---------------------KLAMISVH--------- 842 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 Q L + +Q+ M +VL E + F Sbjct: 843 --QW---------LVKAPLQS------KLIM-QVHDE---LVL--------EVIEDELFV 873 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L LM +PLK E K + Sbjct: 874 VKENLIILMENTFK--LDVPLKVEVGVGKNW 902 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 200/695 (28%), Gaps = 138/695 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ-------SAMPSDL 57 D ET + +P A + W + V + + L Sbjct: 392 DTETTALEP----------RDADLVGIGCCWGMQPDEVAYIPLGHKTGENLHKDLVLEGL 441 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L N+ F+R++ K GI++ + + +L + Sbjct: 442 RPILESADYPKALQNAKFDRLVLK-CQGINLAGV-VFDPMLASYILNPDSSHNLMDLGQR 499 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L K K D + A+ FG K E ++ Sbjct: 500 YLGLIAKSYLDLVPKG------KTIADIDIPSVADYCGMDAYSTFGLVPKLREEL-DKIP 552 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E+ L + + G RI+ + +L + + E +L E+ K+ G + Sbjct: 553 TLSKLLVEVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATKIA-GENFN 611 Query: 235 SRQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L LF G+ TL+ + + + I+ S Sbjct: 612 LGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFV--EAIIEYRTLS 669 Query: 286 GSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L V D R+ A+ TGR S QN+P Sbjct: 670 KLKSTYVDALPALVRPDTQRVHTDFNQA-ATSTGRLSSSNPNLQNIP------------- 715 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 S +R + G +V AD + IE R+LA ++ E ++A+ Sbjct: 716 -----------IRTAFSRQIRKAFLPEAGWLMVAADYSQIELRILAHLSQEPILVQAYQQ 764 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 ED++ T F +K++ E+R I K + + Y G+ F + + Sbjct: 765 NEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRF-----SRSTGIDKNIA 817 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 N E + + ++ ++ + + ++G + + + Sbjct: 818 NEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGRRR--YFDFTNNSLRRLKGSNPED 875 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + L Sbjct: 876 ID-----------------------------------------------LSKLKNLGPYD 888 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTP 640 + L+R +Q + DI+ M + ++L VHDE+V E P Sbjct: 889 AGLLRSAANAP------IQGSNADIIKIAMVRLHEVLKNYQARLLLQVHDELVFEIPPDE 942 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + + S+M +PL E + + Sbjct: 943 WEELQPQIKSVMENAVQ--LSVPLLVEARVGENWM 975 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 202/700 (28%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET L + ++A + Sbjct: 35 FAFDTETDGLDTLSSN----------LIGLSFAVAPGEAAYLPLAHDYLDAPAQLDRDWV 84 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D+ + V N F++ + + GID+ + T + + + Sbjct: 85 LAQLKPLLEDDKALKVGQNLKFDQSMLARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMD 142 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 143 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 187 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + I G ID ++++ + + Sbjct: 188 TLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILVAHSKELTIRLD 247 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + + L++ L+ + ++ + T + +L+ + Sbjct: 248 ELEKQAHELAEEPF-NLASPKQLQVILYEKQKLPILKKTPGGAASTNEEVLAELALDYPL 306 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 307 PKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSRDPNLQNIP-- 363 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +++ AD + IE R++A ++ Sbjct: 364 ----------------------VRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLS 401 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F ++KV+ EQR K + L Y Sbjct: 402 QDKGLLAAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMS-----AFGL 456 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E L G L R Sbjct: 457 ARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNA 516 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + + Sbjct: 517 TRR-----KAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQP----------------- 554 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 555 ---------------------EPLVRVIMQ-------------VHDE---LVFEVH-ESV 576 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+ + + LM ++ A +PLK + + Sbjct: 577 LESAE------QKIRELMEQSMQLA--VPLKVDVGVGYNW 608 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 46 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 95 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 96 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 153 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 154 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 198 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 199 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 258 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 259 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 317 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 318 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 372 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 373 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 412 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 413 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 467 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 468 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 518 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 519 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 550 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 551 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 579 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 580 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 616 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 97/712 (13%), Positives = 196/712 (27%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMDPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + ++ R + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLLRKIVDWRQ-LTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSD 719 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R+ IA G KL+ AD + I Sbjct: 720 PNLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQI 755 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 756 ELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG-- 813 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + + FE + + + + E + + G Sbjct: 814 ---ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGR--- 867 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + + + A Sbjct: 868 ------RTHYPDIRASNPQVRAFNERAAINAPIQGAAADII------------------- 902 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 R ++ + N ++ + Sbjct: 903 --RRAMIRMEDALAKEN-----------------------LAA----RMLLQVHDE---- 929 Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 930 -------LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 105/691 (15%), Positives = 187/691 (27%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S A +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------AYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G +V AD + IE R++A ++ + +K F Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 99/705 (14%), Positives = 190/705 (26%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + + Sbjct: 358 VCIDTETTSIDPML----------AQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQL 407 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L D V + ++ +F GI + T + + Sbjct: 408 SREAVLARMKPWLEDAARKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 465 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK EY Sbjct: 466 HGMDALAERVLHLKTITYEEVCGKGASQIG---------------FDEVPLDRATEYAAE 510 Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G ID + + + + Sbjct: 511 DADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLG 570 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q +L++ L + + F + ++ + T + +L Sbjct: 571 QRLLELEQQAYALAGQPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAE 629 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 630 DYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 688 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 689 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 724 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ ++ ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 725 AHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 779 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 780 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWL---- 835 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + Sbjct: 836 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 877 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 G S R+ ++Q Sbjct: 878 ----DGSPSAGKPGAPMRTRQ----------VMQ-------------VHDE--------- 901 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E P V L LM S +PL AE + Sbjct: 902 --LVLEVPQEELSLVRERLPELMCGVAS--LRVPLVAEVGVGANW 942 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 192/695 (27%), Gaps = 152/695 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDL 57 +L ID ET S + A A + A++W+ D T + L Sbjct: 354 RLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERL 403 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 LR V N ++ ++ + G+++P + T V P +L Sbjct: 404 APILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQ 460 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + G + + G Y D + +L Sbjct: 461 YLRYQMVAITELIGSGRDQKSMRDVS---------------IDEVGPYACEDTDIALQLA 505 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + E L + + G ID ++ ++ + + E +L+ I Sbjct: 506 DVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKI 565 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + L LF G+ T +S+L LIL+ Sbjct: 566 YEVAGVEF-NIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILD 624 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ L + GR+ T + TGR S QN+P Sbjct: 625 WRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTV-TATGRLSSSNPNLQNIP-------- 675 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G KL+ AD IE R+LA ++G++ Sbjct: 676 ----------------VRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G+DI+ T A+ F P ++V+ EQR K++ + Y L Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYG-----ISAWGLAQRLRC 774 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + ++ + + L+G R + Sbjct: 775 STREAQELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGR---------RRYVPNINS 825 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + +L + Sbjct: 826 RNRAERSMAERIAVNMPIQGTQADMI---------------------KLAMVHIYHRLQR 864 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 M L VHDE+V E P Sbjct: 865 EGYRAK----------------------------ML----------LQVHDELVFEMPPE 886 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V L M + +G+P++ + + Sbjct: 887 EVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/691 (15%), Positives = 188/691 (27%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L + G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTVIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G +V AD + IE R++A ++ + +KAF Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 188/700 (26%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 356 FAFDTETDGLDTLT----------ANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYV 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N F+ L + I + + T + + + Sbjct: 406 LETLKPLLEDEKALKVGQNLKFDMGLLARY-DITLRGIAF-DTMLESYVLDSVGGRHDMD 463 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + Y D + Sbjct: 464 SLSDRYLGHKTVTFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADV 508 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + P + E L + I G ID ++ + + Sbjct: 509 TLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQSILATHSIELTKRLA 568 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + + T L+ L+ + ++ + T + +L+ + Sbjct: 569 ELEIQAHELAEEPF-NLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPL 627 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 628 PKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 684 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 685 ----------------------VRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLS 722 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ +KAFA G+DI+ T A+ F +DKV+ EQR K + L Y Sbjct: 723 QDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMS-----AFGL 777 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L Sbjct: 778 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVSTLDGRRLYL-------- 829 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 V + + +V Sbjct: 830 -PDVSSSNGMRRKAAERAAINAPMQGTAADII---------------------KRAMIEV 867 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + L I+Q +V +H E V Sbjct: 868 DAWLQGQDEP-------------LVRMIMQ-------------VHDE---LVFEIH-ESV 897 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + LM + + A +PLK + + Sbjct: 898 IEASS------QRIRELMENSMTLA--VPLKVDVGVGANW 929 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 192/701 (27%), Gaps = 138/701 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50 + +D ET S P+ A + +E + Q Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQLS 431 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + S L ++ D NS F+R +F G+D+ + T + Sbjct: 432 IEDVFSKLRTWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L F K GK K + + + F Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDINEASIYCGYDVFLTFKIVKIFK 543 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++E + + + E L + + G ID+ + KL + + + ++ + + Sbjct: 544 ERFSKEKDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFE 603 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281 L + L LF +D T +L ++ Sbjct: 604 LA-DENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQHLIKH 662 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 663 RTISKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + KL+ AD + IE R+LA +A E+ I Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +DI+ T F +++S ++R +GK + + Y G K A G+ Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 E + + + + G E Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 L K I L S+RR Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q +R +Q S DI+ M K ++L VHDE++ Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNFPAKMLLQVHDELLF 934 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E + + M +PL + + Sbjct: 935 EVEPDSLEITTKLVKKTMENCVK--LNVPLLVDIGIGDNWM 973 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 188/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 343 AFDTETTALDPML----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + I + T + + + + Sbjct: 393 ARLKPWLESADRKKVGQHLKYDAQVLANY-DIALNGIE-HDTLLESYVVESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID + IA +L Sbjct: 496 QLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEIATRLIEL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + + +L G + + F + + T + +L Sbjct: 556 EGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMS-----AFGLAS 764 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + E + + G L Sbjct: 765 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL---------P 815 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + A++ +L M + Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 857 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 RD L M + VHDE+V E Sbjct: 858 -------------------------------RDQLASRMI----------MQVHDELVLE 876 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + Sbjct: 877 VPEGELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 192/701 (27%), Gaps = 138/701 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50 + +D ET S P+ A + +E + Q Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + S L ++ D NS F+R +F G+D+ + T + Sbjct: 432 IEDVFSKLRNWIEDPRKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L F K GK K + + + F Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIGEASIYCGYDVFLTFKIVKIFK 543 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++E + + + E L + + G ID+ + KL + + + ++ + + Sbjct: 544 ERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281 L + L LF +D T +L ++ Sbjct: 604 LA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + KL+ AD + IE R+LA +A E+ I Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +DI+ T F +++S E+R +GK + + Y G K A G+ Sbjct: 758 AFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 E + + + + G E Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 L K I L S+RR Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q +R +Q S DI+ M K ++L VHDE++ Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLF 934 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E + + M +PL + + Sbjct: 935 EVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGTGDNWM 973 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 187/701 (26%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET S L A I ++A + Sbjct: 352 FAFDLETDSLDTL----------SANIIGLSFATAPGEAAYLPVAHDYLDAPEQLDRSDV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L D V N F+R + K+ I++ R+ T + + + Sbjct: 402 LARLKPLLEDPQAQKVGQNLKFDRGVLKRY-DIELQGIRF-DTMLESYALNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN + GK + A + Y D + Sbjct: 460 TLASRWLNHKTVTFEEIAGKGKNQL---------------TFNQIALEQAAHYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + I G I ++ + + Sbjct: 505 TLQLHVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + L+ LF GI + T + +L+ + Sbjct: 565 ELELKAHELAGEPF-NLSSPKQLQTILFEKQGIKPTKKTPGGAPSTSEEVLAELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTV-TATGRLSSSDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA+ +DI+ T A+ F +DKVS EQR K + L Y Sbjct: 719 QDKGLLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ FE + + ++ + L G L Sbjct: 774 SRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + Sbjct: 826 -PDIKASNAMRRKAAERAAINAPMQGTA-------------------------------A 853 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + L ++ + K+ I+Q +V VH Sbjct: 854 DIIKRAMIAVDRWLEQQPSPEVKM---IMQ-------------VHDE---LVFEVH---- 890 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +LM + +PL+ + + Sbjct: 891 ----ADAVEAACAQIRALMEGSMK--LDVPLRVDIGVGDNW 925 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 201/560 (35%), Positives = 293/560 (52%), Gaps = 14/560 (2%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A DEPV +WD T +P L + + Sbjct: 3 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAI 61 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + HNS F+R + + + + RW T V A +GLP +L C L + Sbjct: 62 ADPDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQ 121 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL Sbjct: 122 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPK 181 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + +TDG ++++ Q Sbjct: 182 WNYKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQ 241 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K +L + Sbjct: 242 RDALIKHIVESYGVELPDMQRSTLERRMADPDLPSAVKELLAIRLQASTTSTSKYKSLMK 301 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR ++ + + I+AL G Sbjct: 302 GVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFD 361 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CI+A GKKLVV+DL+ IE R LAW+AGE WK+ AF D+Y Sbjct: 362 NIMELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLY 421 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 YA+AFN D V K QR IGKVMEL LG+ GG F T A GLDL + + Sbjct: 422 KLAYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPN 481 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +A++ + + + + +++ AC+ +K+ WR H W +L Sbjct: 482 IPRDVIREAKNWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPATCDFWYELERTVR 540 Query: 530 CVVQEGGSISARRVANVPRL 549 + + R++ P Sbjct: 541 AAIATPTKDAVLRLSESPPR 560 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 183/710 (25%), Gaps = 170/710 (23%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QS------------ 51 D ET PL A + + A Sbjct: 341 FDTETTGLDPLR----------AKLVGVSLALAPGRACYIPVMHSSGEAQGDLLGGPSAD 390 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + + L L D V+ V HN ++ + G+ + + + T +L+ Sbjct: 391 APKLIPAADILARLKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVL 447 Query: 104 G---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L CL L G Sbjct: 448 DGASHGHGLDELCLLHLGHRNISFAEVCGSGRNQ---------------VTFDRVPLDKA 492 Query: 160 GEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L L P ER L + + G ++D ++ L Sbjct: 493 CAYAAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMAL 552 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 E + +L+ ++V L +G + L LF + ++ T +L Sbjct: 553 SEDFGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWATGADVL 612 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 +L+ S + L ++ GR+ + A+ TGR S Sbjct: 613 EDLAHLHPLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYALA-ATTTGRLSSSD 671 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R +A GK+L+ AD + I Sbjct: 672 PNLQNIP------------------------IRTEEGRKIRHAFVAEPGKRLISADYSQI 707 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A +A + AFA+G DI+ T ++ F P+D + R K + + Y Sbjct: 708 ELRLVAHVAEIEGLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGIS 767 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + Q + F + + + +++ E L G Sbjct: 768 P-----FGLAAQLGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVF 822 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 G+ + G + I LP+ Sbjct: 823 T---------PGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAM----------IRLPA 863 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + + + Sbjct: 864 ALVAEGLKARL--------------------------------------LLQVHDE---- 881 Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E P+ +V + +M + +PL E A + Sbjct: 882 -------LVLEAPEDETEATVRVVKRVMEAAAT--LSVPLLVEAGIADSW 922 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 109/688 (15%), Positives = 204/688 (29%), Gaps = 155/688 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS------------------AMPSDLLQYLRDETVM 67 QA + A A +S + L L D +V+ Sbjct: 427 MQAELIGMAIATAPGRAGYIPFAHKSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVL 486 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----SSLKNACLA-LNFSEHL 122 +A N ++ ++ + GID+ + T +++ + L + Sbjct: 487 KIAQNLKYDLVIMSRY-GIDVAP--FDDTMLISYVLDAGTPHGHGMDQLAEKWLGHTPLQ 543 Query: 123 TKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIP 179 K G K+ + + + A+ ++ W + +++RL Sbjct: 544 LKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLV--SVYERL-- 599 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ER L + + RG +D ++ +L +AQ +L+E+I +L G + Sbjct: 600 ----ERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLI-GERINIGSPK 654 Query: 240 ALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNT 294 L LF G+ ++ T +L I++ + + Sbjct: 655 QLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDA 714 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + D R T A+ TGR S QN+P Sbjct: 715 LPGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIP----------------------- 751 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R+ IA G +LV AD + IE RVLA +A +AFA+G DI+ T + Sbjct: 752 -VRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITAS 810 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + FN P++ + E R K + G+ Sbjct: 811 EMFNVPVEGMPSEVRRRAKAINF--------------GIIYGIS---------------- 840 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 A + + K + + G+ ++ Sbjct: 841 --------------AFGLANQLSIPREEASNYIKKYFERFPGIRDYIEETKAYAREHG-- 884 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 + RR+ Y D++ + R Sbjct: 885 ------------------------FVETIFGRRIHYPDIRSSNPSIRAF---NERASINA 917 Query: 595 GKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 Q + DI+ M + ++L VHDE++ ET + + + Sbjct: 918 RL------QGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVV 971 Query: 649 S-LMTKN--PSWAKGLPLKAEGYEAKRY 673 +M P+ + +PL + A + Sbjct: 972 RHVMENAAMPAVSMSVPLHVDARAANNW 999 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 302 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 351 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 352 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 409 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 410 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 454 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 455 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 514 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 515 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 573 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 574 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 628 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 629 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 668 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 669 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 723 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 724 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 774 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 775 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 806 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 807 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 835 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 836 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 872 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 198/692 (28%), Gaps = 155/692 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------A 52 L +D ET S P+ A + ++A + Sbjct: 314 ILSVDTETTSKHPML----------AKLVGISFAVEPHRAYYIPVGHTGMDAKKQPDLSR 363 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + + + L + V V N ++ I+ + GI + + T + + SL Sbjct: 364 VIALIRPLLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLGF-DTMIASHLLNPSQRGHSL 421 Query: 110 KNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L+ K G K I + Y A+ C Sbjct: 422 DKIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDAD-------ITLLCHGI 474 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ + L ++ E L + + G ++D + +L + QE L+ I Sbjct: 475 LKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTLETQIYA 534 Query: 227 LTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNR 281 L G + + L LF + T +L+ + IL Sbjct: 535 LA-GETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELPEKILRY 593 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + L E + GR+ + + TGR S QN+P Sbjct: 594 RSLGKLKSTYSDALQELIHPETGRIHTSFNQA-ITATGRLSSSDPNLQNIP--------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + G LV AD + IE R+LA A ++ I+ Sbjct: 644 ---------------IRTNEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQ 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +F N EDI+ T A+ F + ++++ R G+ Sbjct: 689 SFRNDEDIHTRTAAEVFQAFPEFITEDLRRQA--------------KAINFGIMYGMS-- 732 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + A + + + ++ A++ GV + Sbjct: 733 ----------------------------AFKLAKEINVTRKTAQTYIDSYFARYAGVKRF 764 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 E + + R+ +D+ L Sbjct: 765 IDKTIEQAKTTGEVTTIL--------------------------GRKRRLNDINASNVNL 798 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 R VQ + D++ M N + ++L+VHDEI+ Sbjct: 799 R---KLAERAAI------NTPVQGSAADLIKLAMINMDRELKKTPLKSRMLLSVHDEIIF 849 Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665 ETP ++ L +M +A +PLK Sbjct: 850 ETPLAEKEALMDLARQVMEGV--FALKVPLKV 879 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 48 AFDTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 97 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 98 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 156 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 200 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 201 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 260 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 261 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 319 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 320 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 374 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 375 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 414 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 415 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 469 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 470 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 520 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 521 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 552 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 553 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 581 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 582 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 109/717 (15%), Positives = 196/717 (27%), Gaps = 167/717 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ----------- 50 + +D ET P A + W ++ + + Sbjct: 400 IAVDTETTDLNPFK----------AELVGVGVCWGEANDALAYIPIGHKPPSELSEATPP 449 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L +L N+ ++R++ + G+ + I T + Sbjct: 450 QQLPLETVLMALSPWLASPQHPKALQNAKYDRLILLRH-GLTLNGV-VIDTLLADYLRDA 507 Query: 106 --PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L F GK A + Y Sbjct: 508 AAKHGLDLMSEREFGFRPTTYGDLVGKKQ------------------TFADVAIEPASLY 549 Query: 163 CKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 C DV TR L +L E+ L + + G RID+ + L Sbjct: 550 CGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLS 609 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSIL 265 + + +L+ D ++ + + L LF G+D T ++L Sbjct: 610 DELGSTLNRLETDAKQVAEVDF-NLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVL 668 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324 L+L S ++ L + V + GR+ + TGR S Sbjct: 669 EKLENDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSN 727 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P S +R + G L+ AD + I Sbjct: 728 PNLQNIP------------------------VRTEYSRRIRKAFLPQEGWTLLSADYSQI 763 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+L ++GE+ +A++ G+D++ T D VS ++R +GK + + Y G Sbjct: 764 ELRILTHLSGEEVLQEAYSTGDDVHALTARLL--LDKDDVSADERRLGKTINFGVIYGMG 821 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 A+ F + T + + + + + + ++G Sbjct: 822 AQRF-----ARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 876 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 L K + I L Sbjct: 877 FHFDR-------------------------------------NGLGRLLGKDPLEIDLDV 899 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 +RR +Q +R +Q S DI+ M Sbjct: 900 ARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAVLLSQ 940 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + L + M +PL E + + Sbjct: 941 GIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENAVK--LSVPLVVETGVGRDWM 995 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 194/701 (27%), Gaps = 138/701 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50 + +D ET S P+ A + +E + Q Sbjct: 382 IVSLDTETNSLNPI----------NAELVGIGLCLGEENDDLFYIPLGHQTKKGTSNQLS 431 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + S L ++ D NS F+R +F G+D+ + T + Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L F L K GK K + + + F Sbjct: 490 GLSEISFRLFGFKPPLFKETVGKN------KDFSFVDIDEASIYCGYDVFLTFKIVKIFK 543 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++E + + + E L + + G ID+ + KL + + + ++ + + Sbjct: 544 ESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281 L G + L LF +D T +L ++ Sbjct: 604 LA-GENFNLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + KL+ AD + IE R+LA +A E+ I Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +DI+ T F +++S E+R +GK + + Y G K A G+ Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 E + + + + G E Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 L K I L S+RR Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q +R +Q S DI+ M K ++L VHDE++ Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNIPAKMLLQVHDELLF 934 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E + + M +PL + + Sbjct: 935 EVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 107/721 (14%), Positives = 188/721 (26%), Gaps = 184/721 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----------QS 51 + +D ET S P+ + + A Sbjct: 403 FVAMDTETTSLDPM----------SCDLVGVSLATAPGRACYIPLRHVASAGPDLLGGGE 452 Query: 52 AMPSD---------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 P+ L L +V+ +A N ++ ++ G+D+ T +++ Sbjct: 453 PPPAQIPFDDAIARLKPLLEARSVLKIAQNMKYDLLVLA-CCGVDVAP--IEDTMLISYA 509 Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAW 156 L L G I + Sbjct: 510 LDSGRNNHGLDELAKKHLGHECIPFAAVAGSGRSFIGFARVPLDKAT------------- 556 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLV 206 EY D + L++ L P E + + + RG ID +++ Sbjct: 557 ----EYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVLAAMERRGVAIDRNIL 612 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262 +L AQ+ +L+ +I L G + L LF G+ + T Sbjct: 613 SRLSGEFAQDMARLEAEIYDLA-GESFNLGSPKQLGDILFGRMGLPGAKKTATGAWSTSA 671 Query: 263 SILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 S+L IL+ S + L V+ T A+ TGR S Sbjct: 672 SVLEDLAESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVHTSYALAATTTGRLS 731 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P A +R +A G L+ AD Sbjct: 732 SSEPNLQNIP------------------------VRNEAGRKIRKAFVAEPGHALISADY 767 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA IA +AFA G DI+ T ++ F P+ + + R K + Sbjct: 768 SQIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINF---- 823 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A + + Sbjct: 824 ----------GIIYGIS------------------------------AFGLANQLGIPRE 843 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ Sbjct: 844 EAAAYIKRYFERFPGIRDYMDKTKRLVREQGVVTTIF----------------------- 880 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 R+ + + + R +Q + DI+ M Sbjct: 881 ---GRKCHFPRIGSSNASERAF---FERAAINAP------IQGAAADIIRRAMARMDAAL 928 Query: 621 -----GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKR 672 +++ VHDE+V E P ++ + +M + P A +PL+ E A+ Sbjct: 929 ATAGCSARMLMQVHDELVFEAPLEETETTIAVVKRVMEEAPHPAATLTVPLQVEARAAQN 988 Query: 673 Y 673 + Sbjct: 989 W 989 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 111/697 (15%), Positives = 201/697 (28%), Gaps = 132/697 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-----------SAM 53 D ET P A + W V + + Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGTGENDVAYIPLGHNITSNLEKNLPLNTV 441 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 S L + L N+ F+R++FK GI + + + +L + Sbjct: 442 LSTLEKILVSGDYPKTFQNAKFDRLIFK-YQGITLDGV-VFDPMLASYVLNPDRTHNLTD 499 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L K+ K D + Q + + K E Sbjct: 500 LALRYLGLQLTEYDDIVQKSGKKERQKTIADISIHTVANYCGKQVYATWQLVGKLREELN 559 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+ L D E+ L ++ + RG I+ + +L + I + L+ K+ Sbjct: 560 -EIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGE 618 Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSN--ITQLAKDLILNRLA 283 + L LF G+ T + L D I+ Sbjct: 619 KF-NLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDAIIEYRT 677 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + ++ L E V+ R+ A+ TGR S QN+P Sbjct: 678 LAKLKSTYVDALPELVNHKTQRIHTNFNQT-ATATGRLSSSNPNLQNIP----------- 725 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 S +R + +G +V AD + IE R+LA ++ E I+A+ Sbjct: 726 -------------IRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAY 772 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +N +DI+ T F+ + V+ E+R K + + Y G F + + Sbjct: 773 SNNQDIHTLTAKLLFDK--EDVTSEERRFAKTINFGVIYGMGVLKF-----SRSTGVDKN 825 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 N + + ++ ++ Q + ++G K Sbjct: 826 IANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDF------------TNK 873 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 L + + K I L L Sbjct: 874 TLQQ-------------------------LKGKDLQEIEL------------NKLKNLGP 896 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 + L+R +Q S DI+ M + ++L VHDE+V E P Sbjct: 897 YDAGLLRSAANAP------IQGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDELVFEVPP 950 Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + + + S+M +PL + + + + Sbjct: 951 SEWDELQLQIKSVMENAMK--LSVPLVVDIHVGENWM 985 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 104/691 (15%), Positives = 186/691 (26%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G +V AD + IE R++A ++ + +K F Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 104/691 (15%), Positives = 186/691 (26%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G +V AD + IE R++A ++ + +K F Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 101/699 (14%), Positives = 192/699 (27%), Gaps = 155/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAKV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L DE ++ + N F++ + ++ ID+ + T + + + Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + G Y D + Sbjct: 461 SLAERYLNHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L ++L L + I G ID ++ + + + Sbjct: 506 TLHLHQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ +L + T L+ L+ + + + T + +L+ + Sbjct: 566 ELETQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L ++ + T + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSG 720 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFANG DI+ T ++ F T +DKV+ EQR K + L Y Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L++ + FE + + + + Q E L G L Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +G A++ + M + P Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTA--ADIIKKAMIAIDDWLQKDAPQ---------- 874 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + M +V +HD ++ Sbjct: 875 -----------------------------------VKMIM-QVHDE---LVFEIHDSVI- 894 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 S+ + +LM +PL+ + + Sbjct: 895 ------EESISKIKTLMEGCME--LNVPLQVDIGTGMNW 925 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 190/701 (27%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDENAHKVGQNLKYDRGILANY-GIELRGITF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P L + + G +ID ++ K E + Q Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLN 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 565 ELEQKAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 826 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDGWLQTEQPRVR------- 875 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 876 --------------------------MIMQ-------------VHDE---LVFEVH---- 889 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 SV + LM +PL E + + Sbjct: 890 ----KDDLESVSKKIHQLMEN--ETQIDVPLLVEVGSGENW 924 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 186/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + + L G + + F + + T + +L Sbjct: 562 EREAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 44 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 93 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 94 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 151 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 152 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 196 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 197 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 256 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 257 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 315 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 316 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 370 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 371 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 410 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 411 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 465 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 466 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 516 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 517 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 548 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 549 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 577 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 578 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 614 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 45 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 94 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 95 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 152 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 153 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 197 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 198 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 257 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 258 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 317 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 371 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 372 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 411 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 412 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 466 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 467 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 517 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 518 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 549 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 550 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 578 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 579 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 615 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 111/721 (15%), Positives = 198/721 (27%), Gaps = 171/721 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSAMPSDLL--- 58 + +D ET + P QA + AW + + Q + DLL Sbjct: 388 VALDTETTALNPF----------QAELVGLGVAWGEGLTELAYIPIGHQPPVADDLLSET 437 Query: 59 -----------------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 +L N+ ++R++ + G+ + + T + Sbjct: 438 PTPPRQLPLDEVLTALAPWLASAEHPKALQNAKYDRLILLRH-GLPL-GGVVMDTLLADY 495 Query: 102 T--NGLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L+ L F+ K + + Sbjct: 496 LRDANAKHGLEVLAQRNLGFTPTSYGELVPKG------------------ASFAAVPVEA 537 Query: 159 FGEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLV 206 YC DV TR L L + E L + + G RID + Sbjct: 538 AALYCGMDVHVTRRLSPLLRRQLEELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYL 597 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTL 261 +L E + +L+ + + L LF G+D T Sbjct: 598 QELSEELGATLARLEAEARAAAGVEF-NLASPKQLGELLFDTLGLDRKKSRRTKTGWSTD 656 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 ++L L+L S ++ L + GR+ + TGR Sbjct: 657 ANVLEKLEDDHPVVPLVLEHRTLSKLKSTYVDALPSLMEPETGRVHTDFNQAV-TATGRL 715 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P S +R + G L+ AD Sbjct: 716 SSSNPNLQNIP------------------------IRTEFSRRIRKAFLPQEGWSLISAD 751 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+L + GE+ ++A+ NG+D++ T + V+ ++R +GK + + Sbjct: 752 YSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLL--LDKEAVTPDERRLGKTINFGVI 809 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y GA+ F + Q + + + + + + + ++G Sbjct: 810 YGMGAQRF-----ARETGVSQSQAKDFLSRYKQRYPKVFAFLELQERLALSRGYVETILG 864 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 L K + I Sbjct: 865 RRRPFAFD-------------------------------------PSGLGRHLGKDPMEI 887 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 L +RR +Q +R +Q S DI+ M + + Sbjct: 888 DLEVARR-------------GGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQA 928 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V L M + +PL E + Sbjct: 929 LSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERAVQ--LTVPLVVETGVGPNW 986 Query: 674 R 674 Sbjct: 987 M 987 >gi|162149305|ref|YP_001603766.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 99/717 (13%), Positives = 178/717 (24%), Gaps = 171/717 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA------------ 52 ID ET PL A + + A + Sbjct: 346 AIDTETDGLDPLR----------AGLVGISLAVAPGRACYIPLAHTAEPPPPQLLPDLLL 395 Query: 53 --------------------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + L L D +V+ + N+ F+ ++ + Sbjct: 396 EPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAG--APQPAP 453 Query: 93 WICTSVLARTNGLPS---SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T +++ + L + G T Sbjct: 454 VDDTMLISYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTGTGRNR---VPFARVDVARAT 510 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A + T + L + ER L + + G ID+ + + Sbjct: 511 AYAAEDADVTLRLWLSLRP--TLRIHHALALYEELERPLVAVLADMERAGIAIDVVELRR 568 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSI 264 + A +++ +I L G + L LF G+ + + GT S+ Sbjct: 569 MSADFATRMAQMEAEIQALA-GRSFNVGSPKQLGEILFDEMGLPGGKRMKSGAWGTDSSV 627 Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L IL + + L + D T + TGR S Sbjct: 628 LQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQMAITSTGRLSSN 687 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A+ G L+ AD + Sbjct: 688 EPNLQNIP------------------------IRTEEGGRIRRAFVAAPGHVLLSADYSQ 723 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA +A +AFA G+DI+ T ++ F PI+ + R K + Sbjct: 724 IELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINF------ 777 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 778 --------GIIYGIS------------------------------AFGLGRQLGIPPGEA 799 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 A+ A++ G+ + + + P Sbjct: 800 RAYIDAYFARYPGIRAYMETVKQEAKDQGYVTT--------------------------P 833 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY- 622 RR + + R+ Q + DI+ M Sbjct: 834 FGRRCWVPGIADRSAVRRAYA---ERQAINAPL------QGGAADIIKRAMVRLPHALAS 884 Query: 623 -----DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E ++ L +M S +PL E + Sbjct: 885 AGLDGRLLLQVHDELLFEVRAGQQDALSALVKQVMESAAS--LSVPLVVETGTGANW 939 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 194/705 (27%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 405 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L DET V + ++ +F GI + T + + Sbjct: 406 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 463 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK A EY Sbjct: 464 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 508 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G +D + + + + Sbjct: 509 DADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELG 568 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q L+++ L + + F + +V + T + +L Sbjct: 569 QRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 627 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 628 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 686 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 687 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 722 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++G+D ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 723 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 777 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 778 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 833 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + Sbjct: 834 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 875 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +G + T R ++Q +VL Sbjct: 876 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 902 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM +PL AE + Sbjct: 903 -----EVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 940 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 104/705 (14%), Positives = 194/705 (27%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 358 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQL 407 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L DET V + ++ +F GI + T + + Sbjct: 408 SREAVLARMRLWLEDETRGKVGQHLKYDAHVFANH-GIALRGIT-HDTMLQSYVLASHRN 465 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK A EY Sbjct: 466 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 510 Query: 166 DVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G +D + + + + Sbjct: 511 DADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELG 570 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q L+++ L + + F + +V + T + +L Sbjct: 571 QRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 629 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 630 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 688 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 689 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 724 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++G+D ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 725 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 779 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 780 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 835 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + Sbjct: 836 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 877 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +G + T R ++Q +VL Sbjct: 878 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 904 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM +PL AE + Sbjct: 905 -----EVPQDELARVRERLPELMCGVA--LLSVPLVAEVGVGSNW 942 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 105/700 (15%), Positives = 204/700 (29%), Gaps = 155/700 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + +D ET S A I ++A Sbjct: 350 RFAVDTETTSVD----------YRLARIVGVSFALQASEAFYIPIGHDYMGAPEQLDAKF 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L + + + + ++ +F GI + + T + + + Sbjct: 400 VLDTLKPILENPAIGKIGQHMKYDAHVFNNH-GISLAGWAF-DTMLASYVLNPTATRHGM 457 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+++ + GK + W+L+ EY + + Sbjct: 458 DDLAQYYLDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADITWRLY-EYFAQALA 516 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +L K L + E + + + G R+D+ + +L + + L+ ++L Sbjct: 517 KIPKLEKLL---LEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELA 573 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L LF GI + T ++IL + IL + Sbjct: 574 GQPF-NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHP--IIATILEYRSL 630 Query: 285 SGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S ++L R+ + + TGR S QN+P Sbjct: 631 SKLKSTYTDSLIAQSDSETQRVHTSYHQA-ITATGRLSSTDPNLQNIP------------ 677 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G +R IA G+ ++ AD + IE R++A + ++ +KAF Sbjct: 678 ------------IRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFR 725 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +G DI+ T A+ ++ V+ +QR K + G+ Sbjct: 726 DGRDIHQATAAEVMGIALEDVTSDQRRQAKAIN--------------FGLLYGMS----- 766 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + KL + + +++ V ++ Sbjct: 767 -------------------------AFGLAKQLKLSRAEAQEYITLYFSRYPSVHDYMEN 801 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 A + RRL +++ + + A Sbjct: 802 TRALAAEQGYVETVL--------------------------GRRLYMENIRAGNAMVRQA 835 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDT 639 R Q + DI+ M + K ++L VHDE+V E + Sbjct: 836 A---ERAAINAPL------QGSAADIIKLAMISVDQALPKEHAKMLLQVHDELVFEVDED 886 Query: 640 PYFSV-GTLCSLMTKNPSWAKG-----LPLKAEGYEAKRY 673 V L LM P+ +G +PL+ E + Sbjct: 887 KADEVTALLKKLM---PAVLQGRADIAVPLEIEVGRGVNW 923 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 209/694 (30%), Gaps = 144/694 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---PSDLL 58 ++ +D ET SP+P+ A + ++ D++ Q A+ ++L Sbjct: 343 KQISLDTETDSPEPMR----------ANLVGISFCMDEKKAYYLPLGHQLAVNLPLPEVL 392 Query: 59 QYLRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113 ++L D + + + HN F+ I+ + G+++ T + A SL+ Sbjct: 393 RHLEDALKGKLLLGHNLKFDLIVLARN-GLELD-NPLFDTMLAAYILDPGTLNYSLETCA 450 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 LN+ GK P + AW ++ Y + Sbjct: 451 LNELNYKMIPISDLIGKGKNQ---STFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFS 507 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + L E L + Q + G ID ++ ++ I E K L + I Sbjct: 508 VMANLFDTI--ELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFAGYEF 565 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L LF + ++ T S+L I +I+ S Sbjct: 566 -NINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLSKLQS 624 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L + ++ GR+ + + TGR S QN+P Sbjct: 625 TYVSALPKMINPQTGRIHSSFNQTV-TSTGRLSSSNPNLQNIP----------------- 666 Query: 349 RGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R A + ++ AD + IE R+LA ++ ++ I+AF D Sbjct: 667 -------VRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLD 719 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ AK FN I+KV+ +QR K + G+ Sbjct: 720 IHKRMAAKIFNVDIEKVTPDQRRAAKTINF--------------GILYGMGQ-------- 757 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + + A+ + Sbjct: 758 ----------------------RKLSRELGISLNEAKDIIDGYYAQFPSIRNFINQCVNK 795 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 RRL ++ L + ++ Sbjct: 796 ARQQHYAETLF--------------------------GRRLYLPNIDSKNQGLKSEAERI 829 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK-----NGYDIVLTVHDEIVSETPDTPYF 642 +Q + D++ M N K ++L VHDE++ E Sbjct: 830 ---------AVNMPIQGTAADLIKIAMLNIHKQIDKREDIKMILQVHDELLFEVQQEALE 880 Query: 643 SVGTLCS-LMTK--NPSWAKGLPLKAEGYEAKRY 673 + M P +A+ + LK + K + Sbjct: 881 ETKNIVKTCMESALPPKYAEKVHLKTDVGVGKNW 914 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 192/706 (27%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADVKKAKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L G + ++ +Y D + T Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKHQQ---------------TLDQIDIEIVAKYAAEDADIT 474 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 LF L + E L ++ + G +ID +++ + K+ Sbjct: 475 FRLFNHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKE 534 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L+ L + LR LF G+ V + T + +L Sbjct: 535 LESKCYNLAGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIA 593 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 LI+ S + L + + + R+ + G + TGR S QN+P Sbjct: 594 ALIMKYRHLSKLKNTYTDKLPKMLDVNSRVHTSYNQTG-TVTGRLSSSDPNLQNIP---- 648 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA NG +V AD + IE R++A ++ + Sbjct: 649 --------------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKD 688 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +KAF DI+ T A+ ID+VS EQR K + Sbjct: 689 KNLLKAFNQSLDIHSATAAEVLGIGIDEVSSEQRRKAKAIN--------------FGLIY 734 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + ++ + + ++ Sbjct: 735 GMS------------------------------AFGLAKQLEIPRAEAQEYIDIYFNRYP 764 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V + E + RRL ++ Sbjct: 765 SVKEYMTTAKEFAKQNGYVETIL--------------------------GRRLYLPEINS 798 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTV 628 A R +Q + DI+ + M + + +V+ V Sbjct: 799 KNVMQRNAA---ERAAINAP------MQGTAADIIKKAMIDVNTMILQEYNSEVKMVMQV 849 Query: 629 HDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E T V + S+M +PL+ + + Sbjct: 850 HDELVFEVKKTKLEEIVAKIKSIMEAAVK--LSVPLEVNVDAGESW 893 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 48 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPSDEVL 97 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 98 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 155 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 156 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 200 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 201 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 260 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 261 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 319 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 320 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 374 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 375 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 414 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 415 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 469 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 470 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 520 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 521 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 552 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 553 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 581 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 582 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 618 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 93/539 (17%), Positives = 163/539 (30%), Gaps = 88/539 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEDIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G +ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L++ + FE + + + Q E + L G L Sbjct: 774 SRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSN 832 >gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] Length = 930 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 89/702 (12%), Positives = 187/702 (26%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 358 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E+ + V N ++ I+ + G+++ T + L + Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQNY-GVEVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 465 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 466 YLHYQTIHIDELIGPKGKNQKNMRDLAPKDVYR---------------YACEDADVTLKL 510 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + ++ ++++++ Sbjct: 511 KNVLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKE 570 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I L G + + LF I + ++ T + +L + I Sbjct: 571 IYDLA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 629 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 630 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 682 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 683 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 724 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + +V + R K G+ Sbjct: 725 MIDAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANF--------------GIIYGI 770 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + GV Sbjct: 771 SVFGLAER------------------------------MNVERKEAKELIDGYFETYPGV 800 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 R+ D+ Sbjct: 801 KAYMDQSIRVAQEKGYVETIFH--------------------------RKRFLPDINSRN 834 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 835 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDE 885 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + P V + ++ +PLKA+ K + Sbjct: 886 LNFSVPIDEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 926 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 98/708 (13%), Positives = 189/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + D ET S L QA + + A + + Sbjct: 350 QFAFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ GI + T + + + Sbjct: 400 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 458 DSLAKRYLGYDTVKYEDICGKGAKQ---------------IKFAQVSLEDATRYAAEDAD 502 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L D E L + + I G +D + + +++ Sbjct: 503 ITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 563 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 621 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL+ + + + L E + GR+ + GA TGR S QN+P Sbjct: 622 LPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 679 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 680 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 716 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 717 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 762 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 763 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 792 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 793 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 826 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M + ++L Sbjct: 827 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMIL 877 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M+ S +PL + + Sbjct: 878 QVHDELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 102/736 (13%), Positives = 196/736 (26%), Gaps = 189/736 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 +D ET S +A I +++ Sbjct: 407 YFAVDTETTSIN----------WREAQIVGLSFSVQAHEAYYLPLAHVDYNEPQKKAKNK 456 Query: 50 ------------------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 + + + L L + + + + ++ + K G Sbjct: 457 KEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAHVLSKY-G 515 Query: 86 IDIP--SKRWI-CTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKG 138 I++ K W T + + S+ + L+ + GK Sbjct: 516 IELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQTISFEDVAGKGAKQVTFDK 575 Query: 139 SIDSPPYDCTRANHVQAWQLFGEY--CKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + D + +QLF + +D + L L E + + + Sbjct: 576 VAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLHEL------EIPVAQILCQMES 629 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----ID 252 G I + +L E +E L++ + G + L LF G Sbjct: 630 EGIMIKRSFLNELSERFDEEIVALEKQAY-IEAGEAFNLGSPKQLGEMLFDKLGVIGGKK 688 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQF 311 T +++LS ++ L + + + L +D R+ + Sbjct: 689 TKSGQYSTGEAVLSKIEHP--LAEIALEYRSLAKLKNTYTDALDAVADNDTDRVHTSYHQ 746 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P +R IA Sbjct: 747 A-LTSTGRLSSTDPNLQNIP------------------------IRTKTGRLIRQAFIAP 781 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G+ L+ AD + IE R++A +G+D +AF G DI+ T A+ +D V+ +R Sbjct: 782 KGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRN 841 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + G+ Sbjct: 842 AKAINF--------------GLLYGMS------------------------------AFG 857 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A + ++ + + + A++ GV + ++ Sbjct: 858 LAKQIQMGRSEAQDYINQYFARYPGVQRYMQETRNSAVDNGY------------------ 899 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 I R+L D++ + R Q + D++ Sbjct: 900 --------IETILGRKLYTPDIQHSNQMVR---RGAERAAINAPL------QGSAADLIK 942 Query: 612 EGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS-------WAK 659 M K ++L VHDE+V E + + + M S W Sbjct: 943 LAMIAVDNVLPKQNAKMLLQVHDELVFEVDADKVDHIAKLIKNAMQNVLSDTAKQMGWDV 1002 Query: 660 G--LPLKAEGYEAKRY 673 +PL E + Sbjct: 1003 DFAVPLLVETGVGDNW 1018 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 192/701 (27%), Gaps = 138/701 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50 + +D ET S P+ A + +E + Q Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPDQLS 431 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + S L ++ D NS F+R +F G+D+ + T + Sbjct: 432 IEDVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLDLKGVTF-DTLLADYLLNNQEKH 489 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L F K GK K + + + F Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIDEASIYCGYDVFLTFKIVKIFK 543 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++E + + + E L + + G ID+ + KL + + + ++ + + Sbjct: 544 ESFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281 L + L LF +D T +L ++ Sbjct: 604 LA-DESFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + KL+ AD + IE R+LA +A E+ I Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILIN 757 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +DI+ T F +++S ++R +GK + + Y G K A G+ Sbjct: 758 AFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 E + + + + G E Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 L K I L ++RR Sbjct: 860 --------------------------NGLGRLLGKDPYEIDLQAARRA------------ 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q +R +Q S DI+ M K ++L VHDE++ Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFTEMNVPAKMLLQVHDELLF 934 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E + + M +PL + + Sbjct: 935 EVEPDSLEITTKLVKKTMEDCVK--LNVPLLVDVGIGDNWM 973 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 91/702 (12%), Positives = 189/702 (26%), Gaps = 162/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 ++ D ET P +A + ++ + ++ Sbjct: 388 EISFDTETTGLDP----------NEAELVGLSFCITKGEAYYVPCPADRNECIQLLNNFQ 437 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA-CLA 115 + ++ V N ++ ++ K G ++ T + S+ Sbjct: 438 PLFNNASITWVGQNIKYDLLMLKWY-GFELQG-NIFDTMLAHYVIEPDGKSSMDLLSAKF 495 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + GK + + EY D + T +L Sbjct: 496 LGYQPVSITELIGKKGKGQG--------------NMRDIEIEKIKEYAAEDADITLQLKN 541 Query: 176 RLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +PL E+ L + + G RID + ++ ++ + ++ + Sbjct: 542 VFLPLIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVY 601 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILN 280 + + L LF +D ++ T + +L+ + IL+ Sbjct: 602 EQAGVKF-NLASPKQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKLANQHKICNDILS 660 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ L + ++ GR+ + A TGR S QN+P Sbjct: 661 FRELTKLKNTYVDALPQLINSKTGRVHTSYAQAVA-VTGRLSSTNPNLQNIP-------- 711 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I LV AD + IE R++A I+ + Sbjct: 712 ----------------VRTERGREIRKAFIPRDENHVLVSADYSQIELRIVAAISADVNM 755 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 +AF G+DI+ T AK FN +V+KE R K + + Sbjct: 756 CEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGII------------------ 797 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + T + + ++ + + Sbjct: 798 --------------------------YGQGAFGLADNLGISRTEAKAIIDNYKKQFPNIQ 831 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 Q + + R+ D+ Sbjct: 832 QYMDNTINFAKETGYVETLM--------------------------GRKRWLKDINSANF 865 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + + + +Q + D++ M ++L VHDE+ Sbjct: 866 TVRGFAERN---------AINSPIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDEL 916 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + V + M + +P AE + + + Sbjct: 917 VFDVLKEELEKVKPVILDCMQHALALPNDVPTNAEIGDGENW 958 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 98/708 (13%), Positives = 189/708 (26%), Gaps = 171/708 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + D ET S L QA + + A + + Sbjct: 350 QFAFDTETDSLDAL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQ 399 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D V + + ++ + ++ GI + T + + + Sbjct: 400 ALAQLAPLLTDPAVRKLGQHGKYDLHVMRRH-GIALAGYA-DDTLLESFVLNSGSARHDM 457 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 458 DSLAKRYLGYDTVKYEDICGKGAKQ---------------IKFAQVSLEDATRYAAEDAD 502 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L D E L + + I G +D + + +++ Sbjct: 503 ITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRM 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 563 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 621 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL+ + + + L E + GR+ + GA TGR S QN+P Sbjct: 622 LPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 679 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 680 -----------------------IRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHL 716 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + Sbjct: 717 SGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINF--------------G 762 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + + Sbjct: 763 LMYGMS------------------------------AFGLARQLGIGRGEAQDYIALYFS 792 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + RRL Sbjct: 793 RYPGVRDFMETTRQQARDKGYVETVF--------------------------GRRLYLDF 826 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVL 626 + R +Q + DI+ M + ++L Sbjct: 827 INAGSQGQRAGA---ERAAINAP------MQGTAADIIKRAMVSVDGWIADHAQRALMIL 877 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E + + + + M+ S +PL + + Sbjct: 878 QVHDELVFEADADFVDTLLAEVTARMSAAAS--LRVPLVVDSGVGDNW 923 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 195/703 (27%), Gaps = 159/703 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--LWDRTEQS---------- 51 D ET L V A A + V+ Sbjct: 352 FSFDTETDGLDTLTVNLVG--------MSFAIAVGESEVEAAYLPLGHDYLDAPEQLDLH 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + + L L D + + N F+R + + + + T + + Sbjct: 404 EVLAALKPLLEDANLPKIGQNLKFDRGVLARY-DVALNGI-VFDTMLESYVLNSVSGRHD 461 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L + + GK + + +Y D Sbjct: 462 MDSLADRHLGYKTTTFEEIAGKGKKQL---------------TFNQIPLEEAAKYAAEDA 506 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L + + P D E L + I G ID + + I Sbjct: 507 DVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDAQTLAEHSTEITAR 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQ 272 +L++ +L + L++ LF + + + T + +L Sbjct: 567 LGELEKAAYELAGEEF-NLASPKQLQVILFEKLNLPVLKKTPNGAPSTNEEVLEELADNH 625 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +IL + + L + V+ R+ + + TGR S QN+P Sbjct: 626 ELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAV-TATGRLSSRDPNLQNIP 684 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G ++ AD + IE R++A Sbjct: 685 ------------------------VRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAH 720 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + ++AFA G+DI+ T A+ F P+++V+ EQR K + L Y Sbjct: 721 LSQDKGLLEAFAQGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMS-----AF 775 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + FE + ++ + Q E + L G L R Sbjct: 776 GLSRQLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSR 835 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + K +G + A++ +L M + P+ R Sbjct: 836 NAMRR-----KASEREAINAPMQGTA------ADIIKLAMIAVDNWIVSEQPNVR----- 879 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 I+Q +V VH Sbjct: 880 ----------------------------MIMQ-------------VHDE---LVFEVH-- 893 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + + LM K+ +PLK + + Sbjct: 894 ------ESELATAEQKISELMEKSMQ--LDVPLKVDVGIGINW 928 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 101/688 (14%), Positives = 195/688 (28%), Gaps = 138/688 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59 ID ET S +A + + W T++ P L Sbjct: 365 FSIDTETTSLNTF----------EAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQD 414 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 L + + N ++ ++ K + + + T + + +L + L Sbjct: 415 VLENPDIKKTGQNLKYDILVLKNHH-VRLAPVGF-DTMLASYVINPEEKHNLDDLAKKHL 472 Query: 117 NFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEATREL 173 N G K I Y C A+ + + E + Sbjct: 473 NHRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQL- 531 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G +D + + E + ++ +L E I G I Sbjct: 532 ------CVNIEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYDTA-GTIF 584 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + G+ ++ T +L ++ +L + Sbjct: 585 NIDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYRSLQKLKTT 644 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + + TGR S QN+P Sbjct: 645 YIDALPKILNPKTGRVHTSFNQH-ITATGRLSSSNPNLQNIP------------------ 685 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I S + + L+ AD + IE R+ A I+ + I AF N EDI Sbjct: 686 ------IRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDAFRNREDI 739 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F+T D ++K+ R K + + Y + L++ Q Sbjct: 740 HTATAKTIFDT--DDITKDMRRKAKEVNFGVLYG-----IQPYGLAQRLNISQKEAKAII 792 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + S + E L G R + + +++ Sbjct: 793 DTYISKYPGLFSALQTTITEAAEKGYVTTLTGR---------RRYIENLRSRNRNIRMAA 843 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 +D+ L + + Sbjct: 844 ERAAMNTPIQGTA-----------------------------ADIIKCAMGLVSEAIKKK 874 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R ++ M L VHDE+V ET + ++ + Sbjct: 875 RMQS--------------------AML----------LQVHDELVFETTEEEKAALAEIA 904 Query: 649 S-LMTKNPSWA--KGLPLKAEGYEAKRY 673 M K + +P++ E K + Sbjct: 905 EGCMQKAAELCGLETVPVEVEIGTGKNW 932 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 51 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 100 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 101 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 158 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 159 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 203 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 204 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTL 263 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 264 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 322 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 323 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 377 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 378 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 417 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 418 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 472 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 473 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 523 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 524 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 555 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 556 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 584 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 585 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 621 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 193/705 (27%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 372 VCIDTETTSIDPML----------AQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQL 421 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L DE V + ++ +F GI + T + + Sbjct: 422 SREAVLARMRLWLEDEIRSKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 479 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK A EY Sbjct: 480 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 524 Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G +D + + + + Sbjct: 525 DADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELG 584 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 L+++ L + + F + +V + T + +L Sbjct: 585 HRLLALEQEAYALAGQPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 643 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 644 DYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 702 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 703 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 738 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++G+D ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 739 AHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 793 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 794 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWL---- 849 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + Sbjct: 850 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 891 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +G + T R ++Q +VL Sbjct: 892 ----EGSPNADKPGTPMRSRL----------VMQ-------------VHDE---LVL--- 918 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM S +PL AE + Sbjct: 919 -----EVPQDELARVRERLPELMCGVAS--LSVPLVAEVGVGSNW 956 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 104/696 (14%), Positives = 197/696 (28%), Gaps = 149/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 ID+ET S P I + ++ + + + Sbjct: 320 FAIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L + L D V N F+ + G++ P + T + A +L + Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPYFDTMIAAYLLEPNEKKFNLDDLA 427 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L + + + F D P + A + Y ++ Sbjct: 428 LKFLGYKMTSYQELMSFS-FPLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEA 486 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 487 DLENVFYKI---EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543 Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF GI T +L LIL Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + V+ GR+ + G + TGR S QNLP Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ +V AD + IE R+LA ++G++ ++AF Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEE 697 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ FN ++V++E R A + G+ S Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 V+ + E + + + V + + Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 R+ + Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 ++ R +Q + DI+ M K +++ VHDE+V E P+ Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPN 858 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + MT +PL+ + K + Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 102/682 (14%), Positives = 197/682 (28%), Gaps = 143/682 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTE-------------QSAMP-----SDLLQYLRDETVM 67 QA + A A ++ +P + L L D +V+ Sbjct: 421 MQAELIGMAIATAPGRAAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVL 480 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----SSLKNACLA-LNFSEHL 122 +A N ++ ++ + + + T +++ + L + Sbjct: 481 KIAQNLKYDLVIMSRY---GVDVAPFDDTMLISYVLDAGTPHGHGMDALAEKWLGHTPLQ 537 Query: 123 TKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIP 179 K G K+ + + + A+ ++ W + +++RL Sbjct: 538 LKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLV--SVYERL-- 593 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ER L + + RG +D ++ +L +AQ +L+E+I +L G + Sbjct: 594 ----ERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLI-GERINIGSPK 648 Query: 240 ALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNT 294 L LF G+ ++ T +L I++ + + Sbjct: 649 QLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDA 708 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + D + T A+ TGR S QN+P Sbjct: 709 LPGFIHPDTKRVHTSYALAATTTGRLSSSDPNLQNIP----------------------- 745 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R+ I +LV AD + IE RVLA +A +AFA+G DI+ T + Sbjct: 746 -VRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITAS 804 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + FN P++ + E R K + + Y L + + FE Sbjct: 805 EMFNVPVEGMPSEVRRRAKAINFGIIYG-----ISAFGLANQLSIPREEAGNYIKKYFER 859 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + E + + G + + L Sbjct: 860 FPGIRDYIEETKAYAREHGFVETIFGRRIH---------YPDIRSSNPSLRAFNERASIN 910 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 RL + + L R Sbjct: 911 A-------------------------------RLQGTAADIIRRAMIRMEEALERA---- 935 Query: 595 GKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK 653 +S ++L VHDE++ ET + + + +M Sbjct: 936 ---------GLSA---------------RMLLQVHDELIFETVEAEVEATIPVVRHVMEN 971 Query: 654 N--PSWAKGLPLKAEGYEAKRY 673 P+ + +PL + A + Sbjct: 972 AAMPAVSMSVPLHVDARAANNW 993 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 189/694 (27%), Gaps = 143/694 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 398 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L YL + + + N +++ +F GI + + + L L Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + Sbjct: 506 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQMD 563 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E E+++++ E + + + G +ID + + + E KL++ Sbjct: 564 EKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAA 617 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 D + L+ LF GI ++ T +++L +IL Sbjct: 618 ADQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 676 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 677 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 726 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 727 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 771 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 772 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 826 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 827 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 877 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G ++ R+ I Sbjct: 878 NTNARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI-------------------- 917 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 M +VL E +T Sbjct: 918 -----------------------GS-----KLVM-QVHDE---LVL--------EVVETE 937 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 938 LDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 971 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 192/695 (27%), Gaps = 152/695 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDL 57 +L ID ET S + A A + A++W+ D T + L Sbjct: 354 RLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERL 403 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 LR V N ++ ++ + G+++P + T V P +L Sbjct: 404 APILRRAQR-KVGQNLKYDLVVLAQH-GVEVPP-PYFDTMVAHYLIAPEEPHNLDVLARQ 460 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + G + + G Y D + +L Sbjct: 461 YLRYQMVAITELIGSGRDQKSMRDVS---------------IDEVGPYACEDTDIALQLA 505 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + E L + + G ID ++ ++ + + E +L+ I Sbjct: 506 DVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKI 565 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + L LF G+ T +S+L LIL+ Sbjct: 566 YEVAGVEF-NIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILD 624 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ L + GR+ T + TGR S QN+P Sbjct: 625 WRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTV-TATGRLSSSNPNLQNIP-------- 675 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G KL+ AD IE R+LA ++G++ Sbjct: 676 ----------------VRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G+DI+ T A+ F P ++V+ EQR K++ + Y L Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYG-----ISAWGLAQRLRC 774 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + ++ + + L+G R + Sbjct: 775 STREAQELIEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGR---------RRYVPNINS 825 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + +L + Sbjct: 826 RNRAERSMAERIAVNMPIQGTQADMI---------------------KLAMVHIYHRLQR 864 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 M L VHDE+V E P Sbjct: 865 EGYRAK----------------------------ML----------LQVHDELVFEMPPE 886 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V L M + +G+P++ + + Sbjct: 887 EVEPVRQLVEQEMKQALP-REGVPIEVDIGVGDNW 920 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 110/693 (15%), Positives = 196/693 (28%), Gaps = 130/693 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SAMPSDL 57 D ET + +P A + W E + + + L Sbjct: 337 DTETTALEP----------RDAKLVGIGCCWGSEKTEIAYIPLEHKTGNQLKKETVLEAL 386 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLA 115 L N+ F+R++FK GI++ T + + +L Sbjct: 387 RPILESNKYPKALQNAKFDRLIFK-VQGINLAGV-VFDTMLASYVLNPDDSHNLTELSRK 444 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--EL 173 S L K K L + D + + + K E EL Sbjct: 445 YLDSGILAKSY--KQLSLSKKQTIADLDIPTAAEYCGLDVYATYLIVPKLRKELQDFPEL 502 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 K L D E+ L + + +G RI++D + +L + ++ +++++ + Sbjct: 503 HKLL---LDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQEAGTEF- 558 Query: 234 SSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + T +L D IL + Sbjct: 559 NLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDHPIIDSILEHRTLAKLK 618 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L E V R+ + TGR S QN+P Sbjct: 619 STYVDALPELVHPQTQRIHTDFNQA-ITTTGRLSSSNPNLQNIP---------------- 661 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R + G LV AD + IE R+LA ++ E ++A+ D Sbjct: 662 --------IRTEFSRQIRQAFLPEPGWLLVSADYSQIELRILAHLSDEPILVEAYKTNRD 713 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 I+ T F V+ E+R GK + + Y GA F + + Sbjct: 714 IHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGALRF-----SREMKVNTNKAKE 768 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + +E+ + + Q L+G Sbjct: 769 FIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGRRRYF--------------------- 807 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 P L + I L + + +Q Sbjct: 808 ----------------HFESPSLKALKESPLEDIPL------------DELKKIGQNDAQ 839 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642 +R +Q S DI+ M ++L VHDE+V E P + Sbjct: 840 FLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYRAKLLLQVHDELVFEVPPEEWE 893 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M ++ +PL + + + Sbjct: 894 ELQPQIKQTMEDA--YSLKVPLLVDIHAGDNWM 924 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 97/703 (13%), Positives = 191/703 (27%), Gaps = 164/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 ++ +D ET A A + ++A+ + L Sbjct: 358 KEVSMDTETTGLD----------ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVL 407 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 L +E + + N ++ I+ K GI++ + + T + ++ Sbjct: 408 RPLLENENIRKIGQNLKYDYIILKWY-GIELKGE-FFDTMLAHYLLDPDTRHNMDVLSEN 465 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L ++ GK + + D Y D + T +L Sbjct: 466 YLGYTPISITELIGKGKNQLNMRDIDVAKVTD---------------YAAEDADVTLQLQ 510 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + P+ + E L + + G +ID++ +++ + + KL+ I Sbjct: 511 QVFEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTI 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279 G + L LF +D ++ T + +L IL Sbjct: 571 Y-HKAGHRFNIASPKQLGEILFDKLQLDPKAKKTKTGQYQTGEDVLLALANKSDIVKDIL 629 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L ++ GR+ + A TGR S QN+P Sbjct: 630 DFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP------- 681 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 VR I L+ AD + IE R++A I+ ++ Sbjct: 682 -----------------IRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDEN 724 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AF+ G DI+ T AK + Sbjct: 725 MMDAFSKGLDIHTATAAKVYGV-------------------------------------- 746 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + TS +A + + + + + + + +++G+ Sbjct: 747 -----ANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEIIENYFEQYKGI 801 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 D + RR D+ Sbjct: 802 KNYMSDTMNFARENGYVETIM--------------------------GRRRYLRDINSAN 835 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631 + T R +Q + D++ M N K + + VHDE Sbjct: 836 A---TVRGFAERNAINAP------IQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDE 886 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + T V + M +P+ E E + Sbjct: 887 LVFDVLVTEKDIVKEIIMDRMKNAIK--TTVPIVVEIGEGLNW 927 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 94/703 (13%), Positives = 184/703 (26%), Gaps = 165/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSD---L 57 L +D ET S + A + +++ +++ + Sbjct: 348 KTLSLDTETTSTDAI----------SAELVGLSFSVEEKEAYYVPIPENREEALKRVAIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E+++ V N ++ + G+ + + T + L ++ Sbjct: 398 KPVYENESILKVGQNIKYDYEVLSNY-GVKLKGAMF-DTMIAHYLIQPELRHNMDYMAET 455 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + + G K + + + Y EY D + T L Sbjct: 456 LLGYQTIHIEELLGSKGKKQKNMRDLSPTDIY---------------EYAAEDADITLRL 500 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P E L + + G RID + + + ++ + ++ + Sbjct: 501 KNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYEVK 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITG-IDLVDMSEG----TLKSILSHSNITQLAKDLI 278 I K + + LF +D ++ T + +L I Sbjct: 561 IFKEAGEEF-NISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIVRNI 619 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 LN + L + ++S G + + + TGR S QN+P Sbjct: 620 LNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------ 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C I G AD + IE R++A ++ +D Sbjct: 673 ------------------VRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDN 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF G DI+ T AK ++ +D V+ QR K G+ Sbjct: 715 MMEAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQ--------------ANFGIIYGI 760 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +Q ++ + + + V Sbjct: 761 TTFGLAQR------------------------------MEIPNNEARALIQDYFRTFPKV 790 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + E RR ++ Sbjct: 791 QAYMEHAKELARSKGYAETLFH--------------------------RRRYLPNINSRN 824 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + +Q DI+ M ++L VHDE Sbjct: 825 GTIRGFDERN---------AINAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDE 875 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL A+ K + Sbjct: 876 LNFSVYPDEREKVEKIVLEEMQNAYP--LNVPLIADAGWGKNW 916 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 185/689 (26%), Gaps = 140/689 (20%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPS 55 D ET S +A + ++ + + + Sbjct: 324 FDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFVLD 373 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 374 KLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSLS 431 Query: 114 -LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169 L G K Y A+ + + F ++D Sbjct: 432 KEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDKVL 491 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G +ID +++ + K+L+ L Sbjct: 492 -------FKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLAG 544 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASS 285 + LR LF G+ V + T + +L LI+ S Sbjct: 545 QEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRHLS 603 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + + ++GR+ + G + TGR S QN+P Sbjct: 604 KLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP-------------- 648 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA +G +V AD + IE R++A ++ + +K F Sbjct: 649 ----------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQN 698 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 699 LDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAEAQ 753 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 F + + + ++ + + ++G L + Sbjct: 754 EYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVMQR 804 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 +K +N S Sbjct: 805 NAAERAAINAPMQGTAADI----------------------------IKKAMINVNMMIS 836 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-V 644 Q + M VHDE+V E T V Sbjct: 837 QEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEEIV 866 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + S+M +PL+ K + Sbjct: 867 AKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5] gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5] Length = 988 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 97/713 (13%), Positives = 185/713 (25%), Gaps = 163/713 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 ID ET S Y QA + ++A T Sbjct: 393 HFVIDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLD 442 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWI-CTSVLARTN 103 + + + L L + + + + ++ + I W T + + Sbjct: 443 RDTVLARLKPILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVI 502 Query: 104 GL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 + + L + GK D + +QLF Sbjct: 503 NAAITRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLF 562 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + K+ + T L + E + + G I + +L + +E Sbjct: 563 DLFSKKLADDT----NNAKLLHELEIPTAEILCQMEANGILIRRPFLNELSKRFDEEIIA 618 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L++ ++ + L LF G+ ++ T +++LS + Sbjct: 619 LEKRAYEVAGEEF-NLGSPKQLGEMLFDKLGVVGGKKTKTGQYSTGEAVLSKIDHP--LV 675 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 D+ L S + L R+ + + TGR S QN+P Sbjct: 676 DITLEYRGLSKLKSTYTDALDNVADAKTDRVHTSYHQA-LTSTGRLSSTDPNLQNIP--- 731 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G+ ++ AD + IE R++A +G Sbjct: 732 ---------------------IRTATGRLIRQAFIAPEGRVILAADYSQIELRLMAHFSG 770 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + AF G DI+ T A+ + +V+ +R K + Sbjct: 771 DKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINF--------------GLL 816 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + ++ + + + ++ Sbjct: 817 YGMS------------------------------AFGLAKQLQMSRSEAQDYIDMYFERY 846 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV + I R+L D+ Sbjct: 847 PGVKDYMINTRASAYEHGY--------------------------IETILGRKLYTPDIN 880 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHD 630 + R Q + D++ M K ++L VHD Sbjct: 881 HSNRMVKQGA---ERAAINAPL------QGSAADLIKLAMIAVDKVLPKEQAKMLLQVHD 931 Query: 631 EIVSETPDTPYFSVGTLC-SLM-----TKNPS--WAKG--LPLKAEGYEAKRY 673 E+V E + L + M W +PL E + + Sbjct: 932 ELVFEVDADKVDEISQLITNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNW 984 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 91/705 (12%), Positives = 185/705 (26%), Gaps = 169/705 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S + A + +++ + + Sbjct: 353 VALDTETTSLDEMA----------ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + L +L D + +++ + GI + T + + P +L++ Sbjct: 403 LARLRPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGY-VHDTMLQSYVLEVHRPHNLES 460 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK + Y D E Sbjct: 461 LAERHLGRSAMRYEDLCGKG---------------AAQIPFARVPIERAAPYACEDAEQC 505 Query: 171 RELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + L P + L + + G ID + + + + + + L Sbjct: 506 LAVHQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALGERIRAL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 + + L + + + + ++ + T + +L Sbjct: 566 EAEAHALAGMPF-NLGSPKQIAEVFYDRLKLPVLKKTATGAPSTDEEVLEKLAEDYPLPA 624 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + + L ++ GR+ A TGR + QN+P Sbjct: 625 RVLEHRSLVKLKSTYTDKLPTMINPATGRVHTHFAQAVA-VTGRLASAEPNLQNIP---- 679 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R+ IA G + AD + IE R++A ++ + Sbjct: 680 --------------------IRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQD 719 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF G D++ T A+ F + V+ EQR K Sbjct: 720 PALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKT--------------INFGLIY 765 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + +A + + + + Sbjct: 766 GMSPY------------------------------GLAKALGIDASAAKSYIERYFERFA 795 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + RRLV +++ Sbjct: 796 GVRAYMEQTRAQARARGYVETVF--------------------------GRRLVLPEIQS 829 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629 A + +Q + D++ M + +VL VH Sbjct: 830 PNGPRRAAAERAA---------INAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVH 880 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P+ V + LM + +PL A + Sbjct: 881 DELVFEVPNEEVDWVRTEVPRLMAAVAT--LRVPLVASVGVGANW 923 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 97/712 (13%), Positives = 196/712 (27%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 L D ET S P+ QA + + A + Sbjct: 390 ILAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMV 439 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 440 ENQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLD 496 Query: 105 L---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L + K G + Sbjct: 497 AGTGSHGMAPLSERWLGHTPIAYKDVAGSG---------------KSAVTFDMVDIDRAT 541 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 542 AYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLS 601 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ +++I L L LF G+ ++ T +L Sbjct: 602 GDLAQAAAAYEDEIYALAGEKFT-IGSPKQLGDILFGKMGLPGASKTKTGQWSTSAQVLE 660 Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + ++ R + + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLLRKIVDWRQ-LTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSD 719 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R+ IA G KL+ AD + I Sbjct: 720 PNLQNIP------------------------VRTAEGRKIRTAFIAEPGNKLISADYSQI 755 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 756 ELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYG-- 813 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + + FE + + + + E + + G Sbjct: 814 ---ISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGR--- 867 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + + + A Sbjct: 868 ------RTHYPDIRASNPQVRAFNERAAINAPIQGAAADII------------------- 902 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 R ++ + N ++ + Sbjct: 903 --RRAMIRMEDALAKEN-----------------------LAA----RMLLQVHDE---- 929 Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E P+ ++ + +M P+ + +PL+ + A + Sbjct: 930 -------LIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNW 974 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 97/705 (13%), Positives = 192/705 (27%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET S P+ QA + + + + + Sbjct: 371 VCLDTETTSIDPM----------QAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQL 420 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L D + V + ++ +F GI + T + + Sbjct: 421 AREAVLARMKPWLEDASRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 478 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK EY Sbjct: 479 HGMDALAERVLHLKTITYEEVCGKGASQIG---------------FDEVPLDRATEYAAE 523 Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + + P E ++ Q + G ID + + + + Sbjct: 524 DADITLRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLG 583 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q +L++ L + + F + ++ + T + +L Sbjct: 584 QRLLELEQQAYALAGQPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPSTDEEVLQKLAE 642 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 643 DYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 701 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 702 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 737 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ ++ ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 738 AHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 792 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 793 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWL---- 848 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + + Sbjct: 849 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWLDGSPSTG---- 897 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + T ++Q +VL Sbjct: 898 ---------------------KPGAPMRTRQVMQ-------------VHDE---LVL--- 917 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM A +PL AE + Sbjct: 918 -----EVPQEELSLVRERLPELMCGVA--ALRVPLVAEVGVGANW 955 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 106/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLPRDEVL 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + + ++ + GI + T + + + + Sbjct: 402 AKLTPWLEDASRKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 460 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLDKASEYAAEDADITL 504 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P D E + L+ + + G ID D + + IA +L Sbjct: 505 QLHRALYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVEL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 565 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ + GR+ A TGR + QN+P Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G K+V AD + IE R++A I+ + Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWL---------P 824 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD V L +M +PL AE + + Sbjct: 886 VPDGELSVVREKLPEMMCGVAK--LKVPLVAEVGVGENW 922 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 102/705 (14%), Positives = 193/705 (27%), Gaps = 155/705 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + ID ET S P+ A + + + + Sbjct: 356 VCIDTETTSIDPML----------AQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQL 405 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A+ + + +L DET V + ++ +F GI + T + + Sbjct: 406 SREAVLARMKLWLEDETRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRN 463 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + L+ + GK A EY Sbjct: 464 HGMDALAERVLHLKTITYEEVCGKG---------------AAQIGFDEVALDRATEYAAE 508 Query: 166 DVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + L P E ++ Q + G +D + + + + Sbjct: 509 DADITLRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELG 568 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI 270 Q +L++ L + + F + +V + T + +L Sbjct: 569 QRLLELEQQAFALAGQPF-NLNSPKQIGELFFTQLKLPVVKKTASGAPSTDEEVLQKLAE 627 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+L+ + + L + V+ GR+ T A TGR + QN Sbjct: 628 DYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATA-VTGRLASTDPNLQN 686 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +V AD + IE R++ Sbjct: 687 IP------------------------VRTEEGRRIREAFVAPAGSVIVSADYSQIELRIM 722 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ ++ ++AF G+D++ T A+ F +V+ EQR KV+ L Y Sbjct: 723 AHLSEDEGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMS----- 777 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + + + F + + + E + + G L Sbjct: 778 AFGLASNLGIGRDAAKLYIDRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWL---- 833 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + A++ +L M + + Sbjct: 834 -----PDINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMLAVQDWL----------- 875 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +G + R ++Q +VL Sbjct: 876 ----EGSPNAGKPGVPMRTRL----------VMQ-------------VHDE---LVL--- 902 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P V L LM S +PL AE + Sbjct: 903 -----EVPQDELARVRERLPELMCDVAS--LRVPLVAEVGVGSNW 940 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 114/705 (16%), Positives = 205/705 (29%), Gaps = 143/705 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSA--------- 52 + ID ET S P Q+ + W + P + + Sbjct: 387 VAIDTETTSLNPF----------QSELVGIGLCWGERPEQIAYIPLGHITEDLFEDQSSN 436 Query: 53 -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L +L V N+ ++R++F + GI + + T + + Sbjct: 437 LQLPLIDVIKGLSPWLGSSEHPKVLQNAKYDRLIFLQY-GIPLEGV-IMDTLLADYLCDV 494 Query: 106 PS--SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 SL+ F+ GK + + + + + Y Sbjct: 495 THRHSLEAMAKREFGFTPTNFNEIVGKD------ETFKNVSISTASLYCGMDVYLTRKLY 548 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + K + L E+ L + + RG RID+ + +L + + K +++ Sbjct: 549 FLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKELSIELNKALKNIEK 608 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDL 277 K+ + L LF G+D T ++L L Sbjct: 609 SAYKIAKTDF-NLSSPKQLGEVLFEQLGLDKKKSRRTKTGWSTDANVLERLQGDNPIVPL 667 Query: 278 ILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ S + L + V + GR+ + TGR S QN+P Sbjct: 668 VIEHRTLSKLLSTYVEALPQLVEAQTGRVHTDFNQAV-TATGRLSSSNPNLQNIP----- 721 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 S +R + G +L+ AD + IE R+LA ++GE Sbjct: 722 -------------------IRTEFSRRIRKAFLPREGWQLLSADYSQIELRILAHLSGEA 762 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +A+ NG+D++ T + ++ +R +GK + + Y G + F Sbjct: 763 SLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVIYGMGVQRF-----ARS 815 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + Q E + S+ + + ++G Sbjct: 816 TGVSQSEAKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHFHFDK------- 868 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 L K + I L +RR Sbjct: 869 ------------------------------NGLGRLLGKNPLEIDLKLARRA-------- 890 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 +Q +R +Q S DI+ M K +++L VHD Sbjct: 891 -----GMEAQQLRAAANAP------IQGSSADIIKVAMVKLDKELKNEGLPANLLLQVHD 939 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 E+V E T V L M K +PL E K + Sbjct: 940 ELVLEVDPTATEQVKALVIHTMEKAV--LLNVPLVVEASVGKNWM 982 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 102/708 (14%), Positives = 197/708 (27%), Gaps = 159/708 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 +L +D ET S P A + + + + ++ Sbjct: 383 RLAVDTETDSLTPAT----------ATLVGVSLSTEPGIACYIPLAHKAEGSAAAGQLDF 432 Query: 53 -------------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + L L D +V+ + HN F+ LF + GI + + ++ Sbjct: 433 DAPPPPAQIPAAEAMAILKDVLEDPSVLKIGHNFKFDHQLFGRN-GITVSP--VDDSMLI 489 Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRAN-H 152 + + L ++ K GK I + Y A+ Sbjct: 490 SYVLEGGSHGHGMDELAELHLAYTPIPFKEVCGTGKNQITFDRVPLDKALAYAAEDADIT 549 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 ++ W L T +++ L +R L + + G RID + +L + Sbjct: 550 LRLWTLLKPRLVDSRMVT--VYETL------DRPLVPVVANMEREGVRIDQQALARLSQD 601 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS 268 ++ ++++++ L G + L LF + + T S+L Sbjct: 602 LSVRLAEIEKEVHALA-GQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLEEL 660 Query: 269 NIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 +L+ + + L E +S GR+ A+ TGR S Sbjct: 661 AEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALA-ATNTGRLSSTDPN 719 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R +AS G KL+ D + IE Sbjct: 720 LQNIP------------------------VRTEEGRKIRRAFVASPGHKLLSVDYSQIEL 755 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R++A +A AF +G DI+ T A+ F P+ +++ + R K + + Y Sbjct: 756 RLVAEMADIQALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYG---- 811 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L + N + E + + + + + L G C + Sbjct: 812 -ISGFGLGRQLGIAPGEANAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYM- 869 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 G+ Sbjct: 870 --------PGIQDKNAARRAFAERQAINAPIQGTAADI---------------------M 900 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + + + + + ++L Sbjct: 901 KRAMNRMPDALAAAGSNAR--------------------------------------MLL 922 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ + +M G+PL AE + Sbjct: 923 QVHDELLFEVPEAEVDDAARIVREVMEGAAH--LGVPLVAEAGIGDNW 968 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 191/701 (27%), Gaps = 138/701 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------- 50 + +D ET S P+ A + +E + Q Sbjct: 382 IVSLDTETNSLNPI----------DAELVGIGLCLGEENDDLFYIPLGHQTKKETPNQLS 431 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + S L ++ D NS F+R +F G+ + + T + Sbjct: 432 IEYVFSKLRNWIEDPKKEKALQNSKFDRQIFFNH-GLILKGVTF-DTLLADYLLNNQEKH 489 Query: 108 SLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L F K GK K + + + F Sbjct: 490 GLSEISFRLFGFKPPSFKETVGKN------KDFSFVDIDEASIYCGYDVFLTFKIVKIFK 543 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++E + + + E L + + G ID+ + KL + + + ++ + + Sbjct: 544 ERFSKEKDELIKLFEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYE 603 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNR 281 L + L LF +D T +L ++ Sbjct: 604 LA-EENFNLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKH 662 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 663 RTLSKLLSTYIDALPNLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP--------- 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + KL+ AD + IE R+LA +A E+ I Sbjct: 713 ---------------VRTEFSRRIRKAFLPEKNCKLLSADYSQIELRILAHLADEEILIN 757 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +DI+ T F +++S ++R +GK + + Y G K A G+ Sbjct: 758 AFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFGVIYGMG---IKKFARSTGVSTP 812 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 E + + + + G E Sbjct: 813 --EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDK----------- 859 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 L K I L S+RR Sbjct: 860 --------------------------NGLGRLIGKDPYEIDLQSARRA------------ 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q +R +Q S DI+ M K ++L VHDE++ Sbjct: 882 -GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLF 934 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E + + M +PL + + Sbjct: 935 EVEQDSLEITTKLVKKTMEDCVK--LNVPLLVDIGIGDNWM 973 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 201/705 (28%), Gaps = 179/705 (25%) Query: 25 AEQAVITLCAYAWDDE---------PVKLWDRTE-------------QSAMPSD-----L 57 A +A + + A D + +P+ L Sbjct: 419 AMRADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRL 478 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL 114 + L D +++ VA N + ++ K+ G+ + + T +++ +++ Sbjct: 479 KELLEDPSILKVAQNLKYGYLVMKRH-GVTMQG--FDDTMLISYVLDAGNGAHGMESLAE 535 Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + +K G + Y D + L Sbjct: 536 RWLGHTPIASKGITGSG---------------RSSLTIDFVDIDKAAAYSAEDADIALRL 580 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ER L + + +RG +D ++ +L +AQ L+++ Sbjct: 581 WHVLKPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDE 640 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN--ITQLAKDL 277 I +L L LF G+ ++ T +L L + + Sbjct: 641 IYRLAGETFT-IGSPKQLGDILFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKI 699 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + R + + L V + + T A+ TGR S QN+P Sbjct: 700 VDWRQ-LTKLKSTYTDALPGFVHPETKRVHTCFALAATTTGRLSSSDPNLQNIP------ 752 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ +A+ G KLV AD + IE RVLA +A Sbjct: 753 ------------------IRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQ 794 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AFA+G DI+ T ++ F P+D + E R K + G+ Sbjct: 795 LRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINF--------------GIIYGI 840 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + K + + G+ Sbjct: 841 SAFGLANQLSIE------------------------------RSEAGDYIKRYFERFPGI 870 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 ++ RR Y D++ Sbjct: 871 RDYMENTKTFARENGYVETIF--------------------------GRRAHYPDIRSSN 904 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631 + R +Q + DI+ M K ++L VHDE Sbjct: 905 PSMRAF---NERASINAP------IQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDE 955 Query: 632 IVSETPDTPYF-SVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 ++ E + ++ + S+M A +PLK + A + Sbjct: 956 LIFEVEEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNW 1000 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 118/705 (16%), Positives = 205/705 (29%), Gaps = 170/705 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S + QA + + A + + Sbjct: 332 VAVDTETTSLDEM----------QARMVGMSLAVSPGVACYIPVAHRGPDNAPQLPKAEV 381 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 + L +L D T + H++ ++ +F GI + T + A L + Sbjct: 382 LARLKPWLEDATRAKLLHHAKYDAHVFAN-EGIKLAGIT-EDTMLQAYVLESHRGVGLND 439 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A G Y D + T Sbjct: 440 LAQRYLGRSGVSYEDLCGKGAKQIG---------------FDEVAVDKAGHYAAEDSDFT 484 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P+ E + + T+ G ++D + + + QE +L Sbjct: 485 LQLHQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQL 544 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF + +V + T + +LS Sbjct: 545 EQKAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKLAQDYPLPQ 603 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L ++ + GR+ A TGR + QN+P Sbjct: 604 VLLEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 658 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR IA G L+ AD + IE R++A ++ + Sbjct: 659 --------------------VRTEAGRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDD 697 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AF GEDI+ T ++ F ++ VS EQR K + L Sbjct: 698 ANLQRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINFGLI--------------Y 743 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ + + N+ + A + + A++ Sbjct: 744 GMGVFGLASNL------------------------------GITRDAAQAYIDRYFARYP 773 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV D RRL +++G Sbjct: 774 GVAMYMDDTRRRAREQGYVETVF--------------------------GRRLQLPEIRG 807 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVH 629 R +Q + D++ M K +++ VH Sbjct: 808 ASGPRRQGA---ERAAINAP------MQGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVH 858 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E PD V L LM + +PL AE K + Sbjct: 859 DELVLEAPDAELELVKEALPRLMCNVAT--LRVPLVAEVGMGKNW 901 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 103/705 (14%), Positives = 198/705 (28%), Gaps = 158/705 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 + +D ET + + + + Sbjct: 350 VAVDTETTGLNEMAC----------DLVGISLCITPGKACYIPLAHRAAATDDLFGSDEL 399 Query: 51 -------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L D VM + N ++ +F + GI I T +++ Sbjct: 400 AEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITP--IDDTMLMSYAM 456 Query: 104 G---LPSSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + L+ + K G K+ I D+ Y A+ ++ W Sbjct: 457 HGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDAVKYAAEDADITLRLW 516 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +F +D +++ L ER L + + G ++D D + ++ +Q+ Sbjct: 517 TIFKPQLHQDRVT--RVYEGL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFSQK 568 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 +L+ +I +L G + L LF G++ + T +L Sbjct: 569 MAQLEAEIHELA-GESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATGADVLEDLATEH 627 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L+ S + L E ++ GR+ + GA+ TGR + QN+P Sbjct: 628 ELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGAN-TGRLASTDPNLQNIP 686 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A GK +V D + IE R+LA Sbjct: 687 ------------------------VRSEEGRRIREAFVAPEGKTIVSLDYSQIELRILAH 722 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +AG D +AF G+DI+ T ++ FN P+++++ E R K + + Y Sbjct: 723 MAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVIYG-----ISGF 777 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + FE + +++ E + L G Sbjct: 778 GLARNLRIPRGEAQAFIDRYFERFPGIKTYMDETVAFAKEHKRVETLFGRIIHT------ 831 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + +A + R Sbjct: 832 ---PEISASGPRAGFAKRAAINAPIQGTAADII----------------------RRAMV 866 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + G +I + + DE Sbjct: 867 RMPGAI-----------------------------AEIPAKMLLQVH-----------DE 886 Query: 632 IVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E + S+M P +PL + K + Sbjct: 887 LIFEVEQGAEDDLIAAARSVMEGAAEPVVKLDVPLVVDAGRGKSW 931 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 106/699 (15%), Positives = 189/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + + ++ + GI + T + + + + Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + EY D + T Sbjct: 460 ALRHLGVRTIKYEDVAGKGAQQIG---------------FDEVPLEQASEYAAEDADITL 504 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA +L Sbjct: 505 QLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIEL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 ++ L G + + F + + T + +L Sbjct: 565 EQQAYGLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ + GR+ A TGR + QN+P Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G K+V AD + IE R++A I+ + Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFANGEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 719 ESLLRAFANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWL---------P 824 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 886 VPEGELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 108/732 (14%), Positives = 192/732 (26%), Gaps = 182/732 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQ----------- 50 + +D ET S P QA + W + Q Sbjct: 384 IALDTETTSLNPF----------QAELVGVGLCWGEGSSDLAYIPIGHQPPSPAPSADLL 433 Query: 51 --------------------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + + L +L N+ ++R++ + G+ + Sbjct: 434 TPASAEPPADSAVLSQQLPLDQVLTALAPWLESARHPKTLQNAKYDRLILLRH-GLSLEG 492 Query: 91 KRWICTSVLART--NGLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + T + L+ F+ K Sbjct: 493 V-VMDTLLADYLRDANAKHGLEVLAERNFGFTPTSFSELVAKG----------------- 534 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTIN 195 YC DV T L L E L + + Sbjct: 535 -ETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEALPKLLDQVELPLEPVLARME 593 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV- 254 G RID + L E +A L+ + + L LF G++ Sbjct: 594 ATGIRIDKPYLATLSEELAGTLASLEAGAREAAGVEF-NLASPKQLGELLFETLGLERKK 652 Query: 255 ----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 T ++L L+L S ++ L V GR+ Sbjct: 653 SRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHRTLSKLKSTYVDALPALVEPETGRVHTDF 712 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P S +R + Sbjct: 713 NQAV-TATGRLSSSNPNLQNIP------------------------IRTEFSRRIRKAFL 747 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G +L+ AD + IE R+L ++GE+ ++A+ANG+D++ T D+V+ ++R Sbjct: 748 PQEGWQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADER 805 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 +GK + + Y GA+ F + Q + + + + + + Sbjct: 806 RLGKTINFGVIYGMGAQRF-----ARETGVSQSQAKEFLSKYKQRYPKVFAFLELQERLA 860 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + ++G L Sbjct: 861 LSRGYVETILGRRRPFAFD-------------------------------------PGGL 883 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 R K I L +RR +Q +R +Q S DI Sbjct: 884 GRLRGKPPEEIELEVARRA-------------GMEAQQLRAAANAP------IQGSSADI 924 Query: 610 LCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLP 662 + M + ++L VHDE+V E + + +M +P Sbjct: 925 IKLAMVQLDQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENAVRLL--VP 982 Query: 663 LKAEGYEAKRYR 674 L + + Sbjct: 983 LLVDTGVGPNWM 994 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 107/691 (15%), Positives = 191/691 (27%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L + D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +L+ + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-YKLY------CELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA NG +V AD + IE R++A ++ + +KAF Sbjct: 649 ------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 190/700 (27%), Gaps = 157/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRTKV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L DE ++ + N F++ + ++ ID+ + T + + + Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + A + G Y D + Sbjct: 461 SLAERYLSHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L ++L L + I G ID ++ + + + Sbjct: 506 TLHLHQKLWGKLQPHADLCQVFQTIDMPLVPVLSRIERTGVLIDPAILAEHSKELTIRLA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 +L+ +L + T L+ L+ + + + T + +L+ + Sbjct: 566 ELETQAYELAGEEF-NLSSTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L ++ + T + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 682 ---------------------VRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSG 720 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFANG DI+ T ++ F +DKV+ EQR K + L Y Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L++ + FE + + + + Q E L G L Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +G A++ + M + P Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTA--ADIIKKAMIAIDDWLQKDTP----------- 873 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATKNGYDIVLTVHDEIV 633 M +V +HD ++ Sbjct: 874 ------------------------------------KVKMIMQVHDE---LVFEIHDSVI 894 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 S+ + +LM +PL+ + + Sbjct: 895 -------EESISKIKALMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 369 bits (947), Expect = e-99, Method: Composition-based stats. Identities = 103/721 (14%), Positives = 192/721 (26%), Gaps = 185/721 (25%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------------- 49 D ET A + + + A Sbjct: 380 AFDTETSELS----------AYKGHLVGVSMAITPGEAAYVPLGHVAADADLLTDPDSAE 429 Query: 50 --QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +P D L L D++++ + N ++ ++ + I T +++ Sbjct: 430 ALGGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH---GIAMTPIDDTMLISYA 486 Query: 103 NGLP-----SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L K G + Sbjct: 487 LDASSGLAGHGMDELSERFLGHKPISYKELCGSG---------------RSAKPIAAVEI 531 Query: 157 QLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLV 206 EY D + T +++ L P ER L + + RG +D ++ Sbjct: 532 DRVTEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQIL 591 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLK 262 +L AQ++ L+++I K+ + L LF G+ ++ T Sbjct: 592 SRLSGNFAQKQAALEDEIAKMAGEEF-NPGSPKQLGEILFGKLGLPGGKKTKSGQWSTDA 650 Query: 263 SILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L +++ + +TL + +GR+ + ++ TGR S Sbjct: 651 RVLEDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRIHTSFSMA-STTTGRLS 709 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R+ +A GKKL+ AD Sbjct: 710 SSEPNLQNIP------------------------VRTEEGRAIRTAFVAPKGKKLLSADY 745 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA IA AF NG DI+ T ++ FN P++ + R K + Sbjct: 746 SQIELRILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINF---- 801 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ + + + Sbjct: 802 ----------GIIYGISAFGLANQLA------------------------------IPRE 821 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ + Sbjct: 822 EAGQYIKRYFERFPGIRDYMDKTKAFAKKHGY--------------------------VE 855 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 RR Y D+ + + R +Q + DI+ M Sbjct: 856 TLFGRRAHYPDITAKNPQIRSF---NERAAINAP------IQGTAADIIRRAMVRMEGAL 906 Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKR 672 ++L VHDE+V E + + ++M P +PL+ E A Sbjct: 907 ADANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNIMEAAASPRVILSVPLEVEAKAALN 966 Query: 673 Y 673 + Sbjct: 967 W 967 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 182/702 (25%), Gaps = 164/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 D ET P+ A + ++A + E + + Sbjct: 368 FFAFDTETDGIDPMK----------AGLVGMSFAVKENEAWYVPVPAAREEADKVLAHFS 417 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + N F+ ++ +K GI I T + + Sbjct: 418 PALQNPKSFKIGQNIKFDILVVRKY-GIRIAG-PLFDTMIAHYLLNPELRHGMDYLAETY 475 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + + G + C EY D + T +L Sbjct: 476 LKYKTVRIEELIGPKGRKQLC--------------MRDVPIPQVAEYAAEDADITLKLKN 521 Query: 176 RLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 P D E L + + G +D + + E + KKL+++I Sbjct: 522 YFAPCLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIY 581 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILN 280 +L + + LF I+ S T + IL + +L Sbjct: 582 ELAGIKF-NINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLE 640 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L E ++ G++ + + TGR S QN+P Sbjct: 641 YRGLKKLLSTYIDALPELINPETGKIHTSYNQAV-TSTGRLSSTNPNLQNIP-------- 691 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R A AD + IE R++A ++ + Sbjct: 692 ----------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHM 735 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G DI+ T AK + P+++V+ + R K G+ Sbjct: 736 IEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANF--------------GIIYGIS 781 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ + + + + + + + Sbjct: 782 VFGLAER------------------------------LNIPRAESKELIEGYFKTYPDIR 811 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E R+ D+ + Sbjct: 812 AYMDESIEVAKEKGYVETIYK--------------------------RKRFLPDINSHNA 845 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + R +Q + DI+ M ++L VHDE+ Sbjct: 846 IVRGYA---ERNAINAP------IQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDEL 896 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ E + Sbjct: 897 NFNVYKDEMEKVKQIVLDEMENAIQ--LQVPLIADCGEGVNW 936 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 107/701 (15%), Positives = 187/701 (26%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIT----------ANLVGLSFAVEPGVAAYVPVAHDYLDAPDQIARDRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVSKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + + G ID ++ K E I Sbjct: 505 TLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ + G + T L+ LF GI + + T + +L + Sbjct: 565 ELEQKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 826 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDGWLESEQPRVR------- 875 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 876 --------------------------MIMQ-------------VHDE---LVFEVH---- 889 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + LM +PL E + + Sbjct: 890 ----KDDLDVVSKKIHQLMENCTR--IDVPLLVEVGSGENW 924 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 108/695 (15%), Positives = 198/695 (28%), Gaps = 169/695 (24%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS------------------AMPSDLLQYLRDETVM 67 QA + A A +S + L L D++V+ Sbjct: 421 MQAELIGMAMATAPGRAAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVL 480 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----SSLKNAC-LALNFSEHL 122 +A N ++ ++ + GID+ + T +++ + L + Sbjct: 481 KIAQNLKYDLVIMSRY-GIDVAP--FDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQ 537 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181 K G + + D + T L+ L P Sbjct: 538 LKDVIGSGKNSVG---------------FDQVDIDKATAHAAEDADVTLRLWLVLKPRLA 582 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ER L + + RG +D ++ +L +AQ +L+E+I +L G Sbjct: 583 ATGLVSVYERLERPLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLV-GER 641 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGS 287 + L LF G+ ++ T +L I++ + Sbjct: 642 INIGSPKQLGDILFGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKL 701 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + + + T A+ TGR S QN+P Sbjct: 702 KSTYTDALPGFIHPETKRVHTSYALAATTTGRLSSSDPNLQNIP---------------- 745 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R+ IA G +LV AD + IE RVLA +A +AFA+G D Sbjct: 746 --------VRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGAD 797 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T ++ FN P++ + E R K + G+ Sbjct: 798 IHAITASEMFNVPVEGMPSEVRRRAKAINF--------------GIIYGIS--------- 834 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A + + K + + G+ ++ Sbjct: 835 ---------------------AFGLANQLSIPREEASNYIKKYFERFPGIRDYIEETKAY 873 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR+ Y D++ + Sbjct: 874 AREHG--------------------------FVETIFGRRIHYPDIRSSNPSIRAF---N 904 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641 R Q + DI+ M + ++L VHDE++ ET D Sbjct: 905 ERASINARL------QGTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEV 958 Query: 642 FSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 + + +M P+ + +PL + A + Sbjct: 959 EATIPIVRHVMENAAMPAVSMSVPLHVDARAANNW 993 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 107/691 (15%), Positives = 191/691 (27%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L + D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +L+ + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-YKLY------CELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA NG +V AD + IE R++A ++ + +KAF Sbjct: 649 ------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + + ++ + GI + T + + + + Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + EY D + T Sbjct: 460 ALRHLGVRTIKYEDVAGKGAQQIG---------------FDEVPLEQASEYAAEDADITL 504 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA +L Sbjct: 505 QLHHALYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIEL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 ++ L G + + F + + T + +L Sbjct: 565 EQQAYGLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ + GR+ A TGR + QN+P Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G K+V AD + IE R++A I+ + Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWL---------P 824 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P++ V L +M +PL AE + + Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 100/716 (13%), Positives = 190/716 (26%), Gaps = 172/716 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM--------- 53 + +D ET P+ A + + + + Sbjct: 395 TVAVDTETDGLTPV----------SAGLVGISLSVEPGRACYIPVQHIDPATPKGATGGL 444 Query: 54 -----------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + L L D V+ V N F+ +F + GI + T Sbjct: 445 DLGGTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIFARH-GIAMAP--IDDT 501 Query: 97 SVLARTNG---LPSSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRA 150 +++ G + L + G K+ I + Y A Sbjct: 502 MLISYVLGTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRVPLDKARDYAAEDA 561 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 + + + R+ L ER L + + RG +D ++ ++ Sbjct: 562 D-----ITLRLHRVLKHDLVRQHMVTLYETV--ERPLVPVVARMESRGVLVDRAVLRQMS 614 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266 AQ +++ +I KL + L LF + + T +L Sbjct: 615 SDFAQRMLEMEAEIQKLAPRAF-NVGSPKQLGEILFDEMKLPGGSKGKSGAWGTDSGVLE 673 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324 +L+ + + L+E + GR+ + A+ TGR S Sbjct: 674 GLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALA-ATATGRLSSTD 732 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R +A G L+ D + I Sbjct: 733 PNLQNIP------------------------IRTEEGRKIRRAFVARPGHLLLSVDYSQI 768 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A +AG +AF +G DI+ T ++ F P+D+++ E R K + Sbjct: 769 ELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAIN-------- 820 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ + + Sbjct: 821 ------FGIIYGISGF------------------------------GLGRQLGITPGEAG 844 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + + + + + Sbjct: 845 AFIRQYFERFPELQTYMETTKAFAREHGYVTTLL-------------------------- 878 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RR ++ R+ +Q + DI+ M Sbjct: 879 GRRCWIQGIREKAPARRAYA---ERQAINAP------IQGTAADIIKRAMARIEPALAAA 929 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P+ + +M G+PL AE A + Sbjct: 930 KLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA--GLGVPLVAEAGWAPNW 983 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 106/720 (14%), Positives = 194/720 (26%), Gaps = 176/720 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-----DDEP----VKLWDRTEQS--- 51 + D ET S A QA + + A D + Sbjct: 383 VAFDTETTSLD----------AMQAELVGFSLAVPEAAPDTGELKVRACYAPLAHSNGVG 432 Query: 52 ----------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 A +L L + V+ + N ++ ++ + +I K + Sbjct: 433 DLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFDD 489 Query: 96 TSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T +L+ + L K G Sbjct: 490 TMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGSG---------------KSAIPF 534 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRI 201 A Y D E T L+ L ER L + + RG R+ Sbjct: 535 AQVAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRV 594 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D ++ +L +AQ L+ +I +L G + L LF + ++ Sbjct: 595 DRQILSRLSGELAQGAAALEAEIQELA-GENFNVGSPKQLGEILFDKMSLPGGSKTKTGQ 653 Query: 259 -GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T L I++ + + L ++ + + T A+ Sbjct: 654 WSTSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAMAATT 713 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P +R+ +A G L Sbjct: 714 TGRLSSSDPNIQNIP------------------------VRTAEGRKIRTAFVAEPGNVL 749 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE RVLA +A +AFA+G DI+ T ++ F PI+ + E R K + Sbjct: 750 ISADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAIN 809 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L +++ FE + + + + + E Sbjct: 810 FGIIYG-----ISAFGLANQLSIERSEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVT 864 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G + R+ + V +G + R Sbjct: 865 TIFGRRAHYPEI--RSSNPQVRAFN---ERAAINAPIQGSAADIIR-------------- 905 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 R +V + + + + QA + Sbjct: 906 ---------RAMVRMEPALEAAGM----------------------QA-------RMLLQ 927 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 ++ ET + + + +M A +PL+ + AK + Sbjct: 928 VHDE-----------LIFETAEADADKIIPVIVEVMENAAMPAIDMAVPLQVDARAAKNW 976 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 107/691 (15%), Positives = 190/691 (27%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELEFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNYFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +L+ + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-YKLY------CELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEFK-LSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA NG +V AD + IE R++A ++ + +KAF Sbjct: 649 ------------IKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 187/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 349 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 399 AKLTPWLGDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 456 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK EY D + T Sbjct: 457 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVPLAQASEYAAEDADITL 501 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 502 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 562 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 771 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 821 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 822 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 853 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 854 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 882 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 883 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 919 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 106/696 (15%), Positives = 196/696 (28%), Gaps = 149/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 ID+ET S P I + ++ + + + Sbjct: 320 FAIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L + L D V N F+ + G++ P T + A +L + Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPHFDTMIAAYLLEPNEKKFNLDDLA 427 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L + + + F D P + A + Y ++ Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFADVPVEKAANYSCEDADITYRLYKILSLKLHEA 486 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 487 DLENVFYKI---EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543 Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF GI T +L LIL Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + V+ GR+ + G + TGR S QNLP Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ +V AD + IE R+LA ++G++ +KAF Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEE 697 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ FN ++V++E R A + G+ S Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 V+ + E + + + V + + Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 R+ + Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 ++ R +Q + DI+ M K +++ VHDE+V E PD Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPD 858 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + MT +PL+ + K + Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 915 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 106/693 (15%), Positives = 188/693 (27%), Gaps = 146/693 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSDL 57 + +D ET L A + + A + +L Sbjct: 343 RFALDTETTGLDAL----------SADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTDEL 392 Query: 58 L----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNA 112 L D + +AHN+ ++ + G+ + + T + A G SLK Sbjct: 393 KRYLGPVLADVGIGKIAHNAKYDLHILAGA-GLLVAGLDF-DTMLAAHLLGESSLSLKGL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L G+ R K + A Y E + Sbjct: 451 AFNRLGIEMTPITALIGEG---RHQKCISTCGLRETADYACADADMTLRLYQLLLPELEK 507 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E RL + E L + + G +D+ ++ + + ++ +++ I + + Sbjct: 508 ENQSRLFD--EVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAIYEQANRP 565 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + + + T ++L LIL + Sbjct: 566 F-NIASPRQLGEVLFEELKLPVGRKTRSGYRTDAAVLEGLKDEHEIVRLILEYRTLAKLK 624 Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L VS DGRL + + TGR S QN+P Sbjct: 625 STYVDILPAMVSARDGRLHTSFNQA-RTATGRLSSSDPNLQNIP---------------- 667 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G +R +A G L+ AD + I+ R LA ++G+ I AF ED Sbjct: 668 --------VRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEED 719 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T + P D+++ E R K + G+ Q Sbjct: 720 IHTATAMSLYGLPRDEITPEMRRFAKTVNF--------------GVIYGMSGYGLEQA-- 763 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 ++ + + ++ GV E Sbjct: 764 ----------------------------TEMSREESTRFIQTYFERYPGVRAYLNLTKEQ 795 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR D+ Sbjct: 796 ARSRGYVETIL--------------------------GRRRYIPDINAAN---RQVREAA 826 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641 R VQ S DI+ M + ++L VHDE++ E P Sbjct: 827 ERMAI------NMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAEL 880 Query: 642 FSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M+ +PL+ + + Sbjct: 881 MFMSELASRRMSAAVE--LKVPLRVDIKYGANW 911 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 190/699 (27%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 352 AFDTETTSLDPML----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + + ++ + GI + T + + + + Sbjct: 402 AKLTPWLEDASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 459 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK + EY D + T Sbjct: 460 ALRHLGVRTIKYEDVAGKGAQQIG---------------FDEVPLEQASEYAAEDADITL 504 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA +L Sbjct: 505 QLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIEL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 ++ L G + + F + + T + +L Sbjct: 565 EQQAYGLAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 623 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ + GR+ A TGR + QN+P Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G K+V AD + IE R++A I+ + Sbjct: 679 --------------------VRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISED 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 773 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 774 NLGITRDAAKLYIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWL---------P 824 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 825 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 856 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 857 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 885 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P++ V L +M +PL AE + + Sbjct: 886 VPESELSIVREKLPEMMCGVAK--LKVPLVAEVGAGENW 922 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 190/703 (27%), Gaps = 160/703 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----------QS 51 + +D ET P A + + AW ++ Sbjct: 333 RFAVDTETTDLHP----------HSAELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRA 382 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 + + L L + N ++ +FK+ I + + + + + Sbjct: 383 DVLAALKPLLESPEIGKTGQNIKYDYQIFKRYH-ITMQGIE-RDSMLYSYLLYGANRAHN 440 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + + GK L Y D Sbjct: 441 LDAIATEELGRTTIKFEDVAGKGRKR---------------IRFDQVPLHLAAPYACEDA 485 Query: 168 EATRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 E T + + P D E R L + + G +D D++ + ++ Sbjct: 486 EVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMSADFSKR 545 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 R +L E+I +L G + + T L LF GI ++ + + ++ + Sbjct: 546 RARLVEEIHELA-GEVFNVNSTQQLGHILFEKMGIKGGKRTKSGFSTDVSVLSKLADDGE 604 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L + + + L + GR+ + + TGR S QN+P Sbjct: 605 KIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAV-TLTGRLSSSDPNLQNIP 663 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R+ IA G L+ AD + IE RVLA Sbjct: 664 ------------------------IRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAH 699 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + +AF G DI+ T A+ F P+ +V+ E R + K + L Y Sbjct: 700 MGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSP-----F 754 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L +Q F ++ H + L G C + Sbjct: 755 GLAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRDARAHGFVETLGGRRCPI------ 808 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + L E + +L Sbjct: 809 ---RDINATQRSLREFAERTAINAPLQGSASDLI---------------------KLAMI 844 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + G +VL VHDE Sbjct: 845 RLHGALQAGGFKAR--------------------------------------MVLQVHDE 866 Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +V E PD +V + M + +PL + + + Sbjct: 867 LVLEVPDKELAAVKEVVRSCMEGVMT--LSIPLVVDMGVGQNW 907 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 110/700 (15%), Positives = 202/700 (28%), Gaps = 162/700 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQY 60 + D ET + I + A + E+ + Sbjct: 388 EFCFDTETTG-FDIF---------NDRIVGLSLAVEPFKAWYVPFLEKDTPEYAEIVRPL 437 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALN 117 DE + + N F+ ++ ++ LGI I R T +L ++ LN Sbjct: 438 FEDEKIAKIGQNIKFDLMVLRR-LGITIRG-RMYDTMILHYLLDPESRHNMNALAEKYLN 495 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + GK + + EY D + T +L + L Sbjct: 496 YKPIEIETLIGKGSKQL---------------TMDLVNVERVKEYAAEDADVTLQLKQAL 540 Query: 178 IPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P+ + E + + I G RID + + + ++ +L+ I Sbjct: 541 YPMIEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRTE 600 Query: 228 TDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282 + L LF I + M++ T + L DLIL Sbjct: 601 AGEPNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDLILEYR 660 Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L + V+ S GR+ + + TGR S QN+P Sbjct: 661 GVKKLLSTYVEALPQLVNRSTGRIHTSFNQAV-TATGRLSSTNPNLQNIP---------- 709 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I + L+ AD + +E R++A ++G++ I Sbjct: 710 --------------VRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIA 755 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GEDI+ T AK FN +D+V+ E+R K G+ Sbjct: 756 AFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANF--------------GIIYGISAF 801 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 SQ ++ + + + + A + GV + Sbjct: 802 GLSQRLE------------------------------IPRKEAKEIIDGYFASYPGVKKY 831 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ E + RR +D+ + Sbjct: 832 MDNVVEKAKEEG--------------------------FVSTIFGRRRYLNDIASHNAIA 865 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 + +Q + DI+ M N + ++L VHDE+V Sbjct: 866 RGLAERN---------AVNAPIQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVV 916 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + V + M + L A+ + Sbjct: 917 DMLRSEQERVTAIVTECMESAAQ--LKVRLIADAGVGGNW 954 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 104/691 (15%), Positives = 186/691 (26%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 322 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAFYIPLQHRYLGVPQQLELGFV 371 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D + VAHN F+ + K I+I K T ++A + + Sbjct: 372 LDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDIDS 429 Query: 112 AC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 L G K Y A+ + + F ++D Sbjct: 430 LSKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQDK 489 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 VL-------FKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNL 542 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF G+ V + T + +L LI+ Sbjct: 543 AGQEF-NLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + + ++GR+ + G + TGR S QN+P Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIP------------ 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G +V AD + IE R++A ++ + +K F Sbjct: 649 ------------IKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DI+ T A+ ID+VS EQR K + L Y L++ + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMS-----AFGLARQLEIPRAE 751 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + + ++ + + ++G L + Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------PEINSKNVM 802 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +K +N Sbjct: 803 QRNAAERAAINAPMQGTAADI----------------------------IKKAMINVNMM 834 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 SQ + M VHDE+V E T Sbjct: 835 ISQEYNSE------------------IKMVM------------QVHDELVFEVKKTKLEE 864 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S+M +PL+ K + Sbjct: 865 IVAKIKSIMEAAVK--LNVPLEVNVDSGKSW 893 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 110/695 (15%), Positives = 190/695 (27%), Gaps = 143/695 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + + ID ET S A A + + A+ Sbjct: 397 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 446 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSL 109 + L +L + + + N +++ +F GI + + + L L Sbjct: 447 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 504 Query: 110 KNACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + GK I + Y A+ + + Sbjct: 505 DELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQM 562 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E E+++++ E + + + G +ID + + + E KL++ Sbjct: 563 DEKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYA 616 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILN 280 D + L+ LF GI ++ T +++L +IL Sbjct: 617 AADQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQ 675 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 676 NRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-------- 726 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR A G +V AD + IE R++A ++G+ I Sbjct: 727 ----------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGI 825 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S F + + ++Q + L G L + Sbjct: 826 DNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRN 876 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + G ++ R+ I Sbjct: 877 KNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI------------------- 917 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 M +VL E +T Sbjct: 918 ------------------------GS-----KLVM-QVHDE---LVL--------EVVET 936 Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 937 ELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 971 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 102/687 (14%), Positives = 194/687 (28%), Gaps = 132/687 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57 + D ET S L A + A++W+ E + +L Sbjct: 369 KSVCFDTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEEL 418 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + ++ + + N ++ + K ID+ T + ++ Sbjct: 419 RNFFENDKIEKIGQNLKYDIKVLDKYK-IDVKG-ALFDTMIAHYLINPDMRHNMDVLAET 476 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN++ GK + D T A F + E Sbjct: 477 YLNYTPQPISELIGKKGKNQGSM--RDVALDKQTEYAVEDADITFQLKNLFEKELEEAET 534 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++L + E L + + G ++D + + L E +A + K L+ I + Sbjct: 535 RKLFN--EIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEEFL- 591 Query: 235 SRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L + LF + ++ T + +LS +L+ Sbjct: 592 ISSPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDYRGLVKLQN 651 Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V GR+ A TGR S QN+P Sbjct: 652 TYVDALPNQVERTTGRVHTDYVQTTA-ATGRLSSNNPNLQNIP----------------- 693 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 VR + L+ AD + IE R++A ++ E+ I+AF +GED Sbjct: 694 -------IRTERGKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQAFKDGED 746 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ +T AK FN P+++V++EQR+ K + + Y L + Sbjct: 747 IHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTSLSRSESKEL 801 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + ++ + + + + E ++G L R + Sbjct: 802 IDTYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAI---------VRGA 852 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + +L ++ N Sbjct: 853 AERNAVNAPIQGSAADII---------------------KLAMINIHKKLKEENY----- 886 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT- 646 ++L VHDE+V + V Sbjct: 887 ---------------------------------KTKMLLQVHDELVFDAHKDELEKVQKM 913 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + S M + +PL + K + Sbjct: 914 IKSEMENA--YKLEVPLDVDLGVGKNW 938 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 112/708 (15%), Positives = 204/708 (28%), Gaps = 154/708 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQ-----------SAM 53 D ET P A + W V + + Sbjct: 392 DTETTDLDP----------RNANLVGIGCCWGMGENDVAYIPLGHNITTNLEKNLQLNTV 441 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 S L + L N+ F+R++FK G+ + + + +L + Sbjct: 442 LSTLDKILASRDYPKTFQNAKFDRLIFK-YQGVTLDGV-IFDPMLASYLLNPDHTHNLTD 499 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L K+ K D + YC + V AT Sbjct: 500 LALRYLGLQLTEYDHIVQKSGKKEPQKTIAD------------ISIHTVANYCGKQVYAT 547 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L +L + E+ L ++ + RG I+ + +L + I + Sbjct: 548 WQLVGKLREELNKIPALFKLLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQYIESDLAT 607 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL- 273 L+ K+ + L LF G+ T + L Sbjct: 608 LEIKATKIAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKISTGYSTDAATLEKLQEVDET 666 Query: 274 -AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 D I+ + ++ L E V+ R+ + A+ TGR S QN+P Sbjct: 667 GFVDAIIEYRTLAKLKSTYVDALPELVNHKTQRIHTSFNQT-ATATGRLSSSNPNLQNIP 725 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 S +R + +G +V AD + IE R+LA Sbjct: 726 ------------------------IRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAH 761 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ E I+A++N +DI+ T F+ + V+ E+R K + + Y G F Sbjct: 762 LSQEPMLIQAYSNNQDIHTLTAKLLFDK--EDVTSEERRFAKTINFGVIYGMGVLKF--- 816 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + N + + ++ ++ Q + ++G Sbjct: 817 --SRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDF---- 870 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 K L E + K I L Sbjct: 871 --------TNKTLREF-------------------------KGKDLQEIEL--------- 888 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627 L + L+R +Q S DI+ M + ++L Sbjct: 889 ---NKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVRLHQVLRPYQTKLLLQ 939 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 VHDE+V E P + + + + S+M +PL + + + + Sbjct: 940 VHDELVFEVPPSEWDELQLQIKSVMENAMK--LSVPLVVDVHVGENWM 985 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 93/703 (13%), Positives = 181/703 (25%), Gaps = 164/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD----RTEQSAMPSDL 57 + D ET A Q + +++ E + + Sbjct: 363 KSICFDTETTGTD----------ANQCELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEF 412 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + + + N F+ ++ K + + + T + ++ Sbjct: 413 KPIFENPAIGKIGQNIKFDMLVLK-YYNVTMQGE-LFDTMLAHYIIDPDTRHNMDILAEN 470 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L +S G + + +Y D + T +L Sbjct: 471 YLGYSPVSITTLIGAKGKGQG--------------TMRDVEIEKIKDYAAEDADVTLQLK 516 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + P D E L + I G RID D + + + + + KL++ + Sbjct: 517 EVFEPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTV 576 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279 + + L LF +D ++ T + +L IL Sbjct: 577 YEKAGVKF-NIASPKQLGEVLFEKLNLDAKAKKTKTGQYQTGEDVLLALANKSDIVRDIL 635 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L V+ GR+ + A TGR S QN+P Sbjct: 636 DFRQLQKLKSTYVDALPLMVNPKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP------- 687 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 VR I + +V AD + IE R++A I+ + Sbjct: 688 -----------------IRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDAN 730 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AF G DI+ T AK + +D+V R Sbjct: 731 MMDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNA------------------------- 765 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +A + + + + + + A++ G+ Sbjct: 766 -------------------KAVNFGIIYGQSAFGLSQNLNIPRKEAADIIDQYFAQYPGI 806 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 D + RR D+ Sbjct: 807 KNYMSDTMNFARENG--------------------------FVQTLMGRRRYLRDINSAN 840 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631 + + R +Q + D++ M N K + + VHDE Sbjct: 841 ATVRGYA---ERNAINAP------IQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDE 891 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + + V + M +P+ E + Sbjct: 892 LVFDVHQSEIEIVKPIIMQNMQTAFK--TEVPIVVEIGTGANW 932 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 96/688 (13%), Positives = 192/688 (27%), Gaps = 135/688 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 L +D ET S + QA + ++A +++ DR E + Sbjct: 348 KVLSLDTETTSTDTM----------QAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E ++ V N ++ + + GIDI K + T + L ++ Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY-GIDIKGKMF-DTMIAHYLIQPELHHNMDYMAET 455 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172 L + G K + + + Y+ + QL+ + E E Sbjct: 456 LLGYKTVHIDELIGAKGKHQKNMRDLSPTDIYEYASEDADITLQLYKVLEPKLKEVNAED 515 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 LF ++ E L + + G +D D + + ++ + + I + Sbjct: 516 LFWKI------EMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQASEKF 569 Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I + ++ T + +L + IL Sbjct: 570 -NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNILKYRGIKKL 628 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + ++ G + + + TGR S QN+P Sbjct: 629 LSTYIDALPKLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP--------------- 672 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R C I AD + IE R++A ++ ++ ++AF +G Sbjct: 673 ---------VRTDDGKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSGH 723 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T AK ++ P+++VS QR K + Y T + + Sbjct: 724 DIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYG-----ITTYGLAQRMGIPNGEAKE 778 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 F+ + ++ + E + L R + + Sbjct: 779 LIEGYFKTFPSVKAFMEKAKQTAREKGYAETLFNR---------RRYLSDINSKNGTVRG 829 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + Sbjct: 830 FAERNA----------------------------------------INAPIQGTEADIIK 849 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 + R + ENI ++L VHDE+ V Sbjct: 850 VAMIRIWERFRRENI-------------------RSKMILQVHDELNFSVFPEEKEKVER 890 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + M +PL A+ + Sbjct: 891 IVIEEMQAAYP--LNVPLVADAGWGNNW 916 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 105/721 (14%), Positives = 180/721 (24%), Gaps = 177/721 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + A +A + + A Sbjct: 449 IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498 Query: 50 ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 L L D + V N ++ + + I + Sbjct: 499 GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFD 555 Query: 95 CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +++ + L G Sbjct: 556 DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200 A Y D + T L++ + P E L + + G Sbjct: 601 FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 ID +++ +L +Q +L+E+I + G + LF G+ + Sbjct: 661 IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719 Query: 260 ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T ++L ILN S ++L + T A+ Sbjct: 720 QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A GKK Sbjct: 780 TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA IA +AF G DI+ T + F +D+++ + R K + Sbjct: 816 LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + FE + + + E Sbjct: 876 NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G C + + Sbjct: 931 TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + L +R +R M Sbjct: 968 -----------------ADIIRRAMTRMEDALEAKRL------------TAR------ML 992 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672 L VHDE+V E PD ++ + +M + P+ A L PL E A Sbjct: 993 ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042 Query: 673 Y 673 + Sbjct: 1043 W 1043 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 105/721 (14%), Positives = 180/721 (24%), Gaps = 177/721 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + A +A + + A Sbjct: 454 IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 503 Query: 50 ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 L L D + V N ++ + + I + Sbjct: 504 GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY---GIDVTPFD 560 Query: 95 CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +++ + L G Sbjct: 561 DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 605 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200 A Y D + T L++ + P E L + + G Sbjct: 606 FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 665 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 ID +++ +L +Q +L+E+I + G + LF G+ + Sbjct: 666 IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 724 Query: 260 ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T ++L ILN S ++L + T A+ Sbjct: 725 QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 784 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A GKK Sbjct: 785 TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 820 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA IA +AF G DI+ T + F +D+++ + R K + Sbjct: 821 LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 880 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + FE + + + E Sbjct: 881 NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 935 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G C + + Sbjct: 936 TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 972 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + L +R +R M Sbjct: 973 -----------------ADIIRRAMTRMEDALEAKRL------------TAR------ML 997 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672 L VHDE+V E PD ++ + +M + P+ A L PL E A Sbjct: 998 ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1047 Query: 673 Y 673 + Sbjct: 1048 W 1048 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 114/701 (16%), Positives = 189/701 (26%), Gaps = 156/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 374 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 423 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 424 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 481 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK A + EY +D + Sbjct: 482 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 526 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 527 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 586 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + + L+ LF GI ++ T +++L Sbjct: 587 EQEAYAVAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 645 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 646 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 702 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 703 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 740 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + L Y G Sbjct: 741 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 795 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 796 AKSLGIDNLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 847 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ R LV D+ Sbjct: 848 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDL 894 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 K I+Q +VL Sbjct: 895 KSKL-----------------------IMQ-------------VHDE---LVL------- 908 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ V L +M K +PL AE + Sbjct: 909 -EVPEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 948 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 106/721 (14%), Positives = 183/721 (25%), Gaps = 177/721 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + A +A + + A Sbjct: 449 IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498 Query: 50 ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 L L D + V N ++ + + GID+ + Sbjct: 499 GAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRP--FD 555 Query: 95 CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +++ + L G Sbjct: 556 DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200 A Y D + T L++ + P E L + + G Sbjct: 601 FDHVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 ID +++ +L +Q +L+E+I + G + LF G+ + Sbjct: 661 IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719 Query: 260 ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T ++L ILN S ++L + T A+ Sbjct: 720 QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A GKK Sbjct: 780 TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA IA +AF G DI+ T + F +D+++ + R K + Sbjct: 816 LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + FE + + + E Sbjct: 876 NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G C + + Sbjct: 931 TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + L ++ +R M Sbjct: 968 -----------------ADIIRRAMTRMEDALEAKKL------------TAR------ML 992 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672 L VHDE+V E PD ++ + +M + P+ A L PL E A Sbjct: 993 ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042 Query: 673 Y 673 + Sbjct: 1043 W 1043 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 106/721 (14%), Positives = 183/721 (25%), Gaps = 177/721 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + A +A + + A Sbjct: 449 IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498 Query: 50 ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 L L D + V N ++ + + GID+ + Sbjct: 499 GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRP--FD 555 Query: 95 CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +++ + L G Sbjct: 556 DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200 A Y D + T L++ + P E L + + G Sbjct: 601 FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 ID +++ +L +Q +L+E+I + G + LF G+ + Sbjct: 661 IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719 Query: 260 ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T ++L ILN S ++L + T A+ Sbjct: 720 QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A GKK Sbjct: 780 TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA IA +AF G DI+ T + F +D+++ + R K + Sbjct: 816 LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + FE + + + E Sbjct: 876 NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G C + + Sbjct: 931 TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + L ++ +R M Sbjct: 968 -----------------ADIIRRAMTRMEDALEAKKL------------TAR------ML 992 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672 L VHDE+V E PD ++ + +M + P+ A L PL E A Sbjct: 993 ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042 Query: 673 Y 673 + Sbjct: 1043 W 1043 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 198/707 (28%), Gaps = 150/707 (21%) Query: 8 IETRSPQPLP----KVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTE--QSAMPS---- 55 +ET + +P A + W + + Sbjct: 371 LETFTNPDIPVAWDTETSDLEPRDATLVGIGCCWGTQPDESAYIPIAHKFGENLSQDVVF 430 Query: 56 -DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 +L L N F+R++F + GI + T + + P +L + Sbjct: 431 AELSPILTSADYPKTFQNGKFDRLVF-RCQGIKLAGI-VFDTMLASYVLNPDTPHNLNDI 488 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K + G YC V AT Sbjct: 489 SLRYLGLILKSYEDLVPKGQ------------------TIADISIASVGYYCCLQVHATF 530 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++L + E+ L + + G I+ + +L + + + KL Sbjct: 531 QLVQKLREELEKFPALHKLLLEVEQPLEAVLAEMEYTGVCINSAYLHELSQQLEIDLAKL 590 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL-- 273 + + G + L + LF G+ T + L Sbjct: 591 E-ETATSIAGETFNLGSPKQLSVILFDKLGLSTKYSRKIKTGYSTDVATLEKLQEVDETG 649 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 D ++ S ++ L V D RL + TGR S QN+P Sbjct: 650 FVDAMMEYRTLSKLKSTYVDALPALVRPDTQRLHTNFNQTV-TATGRLSSSNPNLQNIP- 707 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 S +R + +G + AD + IE R+LA + Sbjct: 708 -----------------------IRTAFSRQIRKAFLPESGYLMAAADYSQIELRILAHL 744 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + E ++A+ EDI+ T F ++ ++R I K + + Y G+ F Sbjct: 745 SQEPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRF---- 798 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + N E + Q ++ ++ Q + ++G + K Sbjct: 799 -SRSTGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILGRRRYVDFKN--- 854 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 L ++ + I L Sbjct: 855 ----------------------------------DSLRKLKNSKPEDIDL---------- 870 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTV 628 L + L+R +Q S DI+ M + ++L V Sbjct: 871 --SKLKNLGPEDAGLLRSAANAP------IQGSSADIIKIAMIRMHEVLQKYQARLLLQV 922 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 HDE+V E P + + + S+M + +PL + + Sbjct: 923 HDELVFEVPPQEWEELQPQIKSVMENAVT--LSVPLLVDVRAGDNWM 967 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 111/701 (15%), Positives = 185/701 (26%), Gaps = 157/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK A + EY +D + Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F T + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ R+ I Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI------------- 872 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 M +VL Sbjct: 873 ------------------------------GS-----KLVM-QVHDE---LVL------- 886 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T V L +M K +PL AE + + Sbjct: 887 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 106/721 (14%), Positives = 183/721 (25%), Gaps = 177/721 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + A +A + + A Sbjct: 449 IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGES 498 Query: 50 ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 L L D + V N ++ + + GID+ + Sbjct: 499 GAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRP--FD 555 Query: 95 CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +++ + L G Sbjct: 556 DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200 A Y D + T L++ + P E L + + G Sbjct: 601 FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 ID +++ +L +Q +L+E+I + G + LF G+ + Sbjct: 661 IDRNMLSRLSGDFSQILARLEEEIQEDA-GERFQVSSPKQIGDVLFGKMGLPGAKKTPSG 719 Query: 260 ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T ++L ILN S ++L + T A+ Sbjct: 720 QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 779 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A GKK Sbjct: 780 TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA IA +AF G DI+ T + F +D+++ + R K + Sbjct: 816 LISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTI 875 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + FE + + + E Sbjct: 876 NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G C + + Sbjct: 931 TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA-------------- 967 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + L ++ +R M Sbjct: 968 -----------------ADIIRRAMTRMEDALEAKKL------------TAR------ML 992 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672 L VHDE+V E PD ++ + +M + P+ A L PL E A Sbjct: 993 ----------LQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLVVEARAAGN 1042 Query: 673 Y 673 + Sbjct: 1043 W 1043 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 108/709 (15%), Positives = 203/709 (28%), Gaps = 159/709 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQS--------AM 53 + ID ET P A + + W D + + Sbjct: 396 VAIDTETTDLNPFR----------AQLVGLGFCWGEADNDLAYIPIGHSGAEGQLPLAEV 445 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L +L T N+ ++R++ + G+++ T + +L+ Sbjct: 446 LEALAPWLASPTQRKCLQNAKYDRLVLLRH-GLELNGVAV-DTLLADYLRDASARHNLEE 503 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 F GK + +YC DV T Sbjct: 504 LAQRHYGFRPTSFSDLVGKGQ------------------TFADVPIEAAAQYCGMDVHLT 545 Query: 171 RELFKRLIPLSDGERDLWL------------LDQTINDRGYRIDLDLVLKLQELIAQERK 218 L L+ + + + + G RID+ + +L + + + + Sbjct: 546 YRLAIDLVQQLEQLGEALPQLLSELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQ 605 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQL 273 +L++ + + L LF G+D T ++L Sbjct: 606 QLEQQAIAAAGEEF-NLASPKQLGELLFNTLGLDRKKSRKTKTGWSTDAAVLEKLEDAHP 664 Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L+L S ++ L + V S GR+ + TGR S QN+P Sbjct: 665 VVPLVLEHRTLSKLKSTYVDALPQLVESETGRVHTDFNQAV-TATGRLSSSNPNLQNIP- 722 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 S +R + L+ AD + IE R+L + Sbjct: 723 -----------------------VRTAYSRQIRKAFLPQKDWTLLSADYSQIELRILTHL 759 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 GE+ ++A+ +G+D++ T + +VS E+R +GK + + Y GA+ F Sbjct: 760 CGEEALVEAYNSGDDVHALTARLLLDKS--EVSDEERRLGKTINFGVIYGMGAQRF---- 813 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + Q + + + + + W + + L+G Sbjct: 814 -ARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRRPFHFD---- 868 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 L + I L +RR Sbjct: 869 ---------------------------------PQGLGRLKGTDPAEIDLDVARR----- 890 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626 +Q +R +Q S DI+ + M + + ++L Sbjct: 891 --------GGMEAQQLRAAANAP------IQGSSADIIKKAMVDLQQLLLDQQLPARLLL 936 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 VHDE+V E +V ++ M + S +PL E + Sbjct: 937 QVHDELVLECAPNALATVQSSVQRTMEQAVS--LSVPLVVEIGSGPNWM 983 >gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2] gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2] gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2] Length = 949 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 90/696 (12%), Positives = 184/696 (26%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K + Y + Sbjct: 744 MIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + FE + +++ E + + L + Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ R Y TE +QA ++L VHDE+ P Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + ++ +PLKA+ K + Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 101/702 (14%), Positives = 191/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 + +D ET S + A + +++ ++ DR E + + Sbjct: 349 FVSLDTETTSTDAI----------SAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E ++ + N ++ + G+ + K + T + L ++ Sbjct: 399 PLYENEQILKIGQNIKYDYEVLS-HYGVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETL 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K R + + Y EY D + T L Sbjct: 457 LGYRTIHIEELLGPKGKKQRNMRDLSPTDIY---------------EYAAEDADITLRLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G +D + + + + K+ +++I Sbjct: 502 HVLEPHLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 K G + + LF I D ++ T + +L IL Sbjct: 562 YKEA-GETFNIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N ++ L + ++ G + + + TGR S QN+P Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQ-TSTGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I +G AD + IE R++A ++G++ Sbjct: 673 -----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF G DI+ T AK ++ I+KV+ QR K G+ Sbjct: 716 MEAFREGHDIHRATAAKIWHEDIEKVTDAQRKKAKQAN--------------FGIIYGIT 761 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +Q + + + + + V Sbjct: 762 TYGLAQR------------------------------MGIPNSEARELIQDYFHTFPKVK 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E RR D+ + Sbjct: 792 AYMEQAKETARAKGYAETLFH--------------------------RRRYLPDINSRNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 T R +Q DI+ M K ++L VHDE+ Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ + Sbjct: 877 NFSVYPEEREQVERIVIEEMQHACQ--LNVPLTADAGWGSNW 916 >gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4] gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4] Length = 949 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 89/696 (12%), Positives = 183/696 (26%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K + Y + Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + FE + +++ E + + L + Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ R Y E +QA ++L VHDE+ P Sbjct: 870 QGSAADIIKVAMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVP 910 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + ++ +PLKA+ K + Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 192/694 (27%), Gaps = 135/694 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 398 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L YL + + + N +++ +F GI + + + L L Sbjct: 448 VLGHLKPYLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + Sbjct: 506 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQMD 563 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E E+++++ E + + + G +ID + + + E KL+++ Sbjct: 564 EKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 617 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 618 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 676 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 677 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 726 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 727 ---------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 771 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 772 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 826 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F+ + + ++Q + L G L + Sbjct: 827 NLSAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 877 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G ++ P L Sbjct: 878 NANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELL------------ 925 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 Q+ M +VL E +T Sbjct: 926 ----------------------QS------KLIM-QVHDE---LVL--------EVVETE 945 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 946 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 107/696 (15%), Positives = 197/696 (28%), Gaps = 149/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 +D+ET S P I + ++ + + + Sbjct: 320 FAVDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L + L D V N F+ + G++ P T + A +L + Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA 427 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L + + + F D P + A + Y ++ Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFADVPVEKAANYSCEDADITYRLYKTLSLKLHEA 486 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 487 DLENVFYKI---EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543 Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF GI T +L LIL Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + V+ GR+ + G + TGR S QNLP Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ +V AD + IE R+LA ++G++ +KAF Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEE 697 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ FN ++V++E R A + G+ S Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 V+ + E + + + V + + Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 RR R + Sbjct: 774 VSEAKEKGYVRTLFGRRRDIPQLMARDRNTQ----------------------------- 804 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 ++ R +Q + DI+ M K +++ VHDE+V E PD Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPD 858 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + MT +PL+ + K + Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] Length = 949 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 90/696 (12%), Positives = 184/696 (26%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K + Y + Sbjct: 744 MIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + FE + +++ E + + L + Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ R Y TE +QA ++L VHDE+ P Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + ++ +PLKA+ K + Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 186/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I +++ + + + Sbjct: 41 AFDTETTSLDPMR----------AQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVL 90 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L D + + ++ + GI + T + + + + Sbjct: 91 AKLTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSL 148 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + G+ EY D + T Sbjct: 149 ALRHLGVKTIKYEDVAGQGAQQIG---------------FDEVPLAQAFEYAAEDADITL 193 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P D E + L+ + + G ID D + + IA L Sbjct: 194 QLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVAL 253 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +++ L G + + F + + T + +L Sbjct: 254 EQEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 312 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ D GR+ A TGR + QN+P Sbjct: 313 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 367 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++ I+ + Sbjct: 368 --------------------VRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISED 407 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y + Sbjct: 408 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMS-----SFGLAS 462 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + + E + + G L Sbjct: 463 NLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWL---------P 513 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + Sbjct: 514 EINGGNGPRRQAAERAAINAPMQGTAADLIKL---------------------------- 545 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + L R GG I+Q +VL E Sbjct: 546 ---SMIAVDDWLER----GGLRARMIMQ-------------VHDE---LVL--------E 574 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M +PL AE + + Sbjct: 575 VPEDELSIVREKLPEMMCGVAK--LKVPLVAEVGVGENW 611 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 119/717 (16%), Positives = 202/717 (28%), Gaps = 167/717 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQ----------- 50 + ID ET S P A + + W + + + Sbjct: 387 VAIDTETTSLNPFK----------AELVGLGFCWGENLDDIAYIPLGHNSQGELKDQSIR 436 Query: 51 -----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L +L V N+ ++R++F GI + + T + + Sbjct: 437 QQLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIFL-HNGIPLEGV-VMDTLLADYLSNS 494 Query: 106 P--SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 SL F+ K GK Y Sbjct: 495 TNKHSLDEIAKREYGFTPINFKELVGKG------------------ETFKDVDIDTASIY 536 Query: 163 CKRDVEATRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 C DV TR+L R+ E+ L + + RG ID+ + +L Sbjct: 537 CGMDVYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELS 596 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSIL 265 + + Q K L+E K + L LF +D T ++L Sbjct: 597 KELNQTLKGLEEQAYKSAGFEF-NLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVL 655 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324 L++ S ++ L + V + GR+ + TGR S Sbjct: 656 ERLEADHPLVPLLVEHRTLSKLVSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSN 714 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P S +R + KL+ AD + I Sbjct: 715 PNLQNIP------------------------IRTEFSRRIRKAFLPQENWKLISADYSQI 750 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA ++GE+ +A+ NG+D++ T + ++ +R +GK + + Y G Sbjct: 751 ELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYGMG 808 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 A + A GL+ Q E + + S + L+G Sbjct: 809 A---QRFARSTGLN--QSEAKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGRRRY 863 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 L ++I L Sbjct: 864 FNFDK-------------------------------------NGLGRLLGSDPMNIDLKR 886 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 +RR +Q +R +Q S DI+ M Sbjct: 887 ARRA-------------GMEAQQLRAAANAP------IQGSSADIIKIAMVQLATKLKVS 927 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 +++L VHDE+V E + V + S M A +PL + Sbjct: 928 GVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENAVHLA--VPLVVHASIGDNWM 982 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 102/711 (14%), Positives = 193/711 (27%), Gaps = 182/711 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 D ET S P+ QA + + A Sbjct: 380 YFSFDTETTSLNPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEDNLLGGGRI 429 Query: 50 -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 + L L ++ V+ + N ++ ++ K+ +I + T +L+ Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQH---NIVMCSFDDTMLLSYALE 486 Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L K + + Sbjct: 487 AGISTHGMDVLSERWLGHKPISYKDLT---------------HSRRKIVSFARVDLKQAT 531 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P +R L + + +RG +D ++ +L Sbjct: 532 LYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLS 591 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266 +AQ L E+I +L + L LF G+ ++ T L Sbjct: 592 GELAQTVLNLGEEIYQLVGEKF-NIASPKQLGDILFGKMGLPGGTKTKSGQWSTSAQTLE 650 Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 L + +I R + + L + GR+ + TGR S Sbjct: 651 ELAAEGHILPRKIIDWRQ-LTKLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSS 708 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R+ +AS G L+ AD + Sbjct: 709 EPNLQNIP------------------------VRTAEGRKIRAAFVASKGHLLLSADYSQ 744 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA +A +AFA G+DI+ T ++ F ++ ++ E R K + Sbjct: 745 IELRILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINF------ 798 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 799 --------GIIYGISPFGLASQ------------------------------LGISRKEA 820 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + G+ + Sbjct: 821 SDYIQLYFERFPGIEDYMERTKIFARHYGYVETIF------------------------- 855 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RR+ Y ++K D + + R +Q + DI+ M Sbjct: 856 -GRRIHYPEIKTDKPQIRSF---NERAAINAP------IQGSAADIIRRAMIQMENALEK 905 Query: 621 ---GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKA 665 ++L VHDE++ E P + + + +M P+ + +PL+ Sbjct: 906 ERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVMENATMPALSLSVPLEV 956 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 108/700 (15%), Positives = 190/700 (27%), Gaps = 156/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 357 FAFDTETDGLDTLT----------ANLIGLSFAIAPGEAAYLPVAHDYLDAPTQLDRAHV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE + V N F+ L + I + + T + + + Sbjct: 407 LATLKPLLEDEKALKVGQNLKFDMSLLARY-DITLRGIAF-DTMLESYVLDSVGGRHDMD 464 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + Y D + Sbjct: 465 SLSDRYLGHKTVTFEEIAGKGKKQL---------------TFNQIALEQAAPYAAEDADV 509 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + P E L + I G ID ++ + + Sbjct: 510 TLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLIDQSILATHSIELTKRLA 569 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + + T L+ L+ + ++ + T + +L+ + Sbjct: 570 ELEIQAHELAEEPF-NLASTKQLQAILYEKQKLPILKKTPGGAPSTNEEVLAELALDYPL 628 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 629 PKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 685 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 686 ----------------------VRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLS 723 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ +KAFA GEDI+ T A+ F P+DKV+ EQR K + L Y Sbjct: 724 QDEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMS-----AFGL 778 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q L G L Sbjct: 779 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAASQGYVSTLDGRRLYL-------- 830 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 V + + R ++ P Sbjct: 831 -PDVSSSNGMRRKAAERAAINAPMQGTAADI-IKRAMIEVDAWLQAQEKP---------- 878 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH E V Sbjct: 879 -----------------------LVRMIMQ-------------VHDE---LVFEVH-ESV 898 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E S + LM + + A +PLK + + Sbjct: 899 LE------ESNQRIRELMENSMALA--VPLKVDVGVGANW 930 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 189/692 (27%), Gaps = 139/692 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGLD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNT 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ R+ I Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI---------------------- 872 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E +T Sbjct: 873 ---------------------GS-----KLVM-QVHDE---LVL--------EVVETELD 894 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 100/700 (14%), Positives = 188/700 (26%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + D ET S + A + ++A + + Sbjct: 333 VAFDTETTSLDQMA----------AKLVGMSFAIVEGEAAYLPLAHIYPAAPAQLPLAEV 382 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKN 111 + L +L + + N ++ + G+ + T + + P + + Sbjct: 383 LAKLKPWLESDAHPKLGQNLKYDAHVLANH-GLRLGGIA-HDTLLQSYVLESDRPHDMDS 440 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L GK + A + EY D + T Sbjct: 441 LAKRHLGIDTIPYTAVCGKGVGQ---------------ICFDQVAIERATEYAAEDADIT 485 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L ++L P D E + + G ID L+ + E + + Sbjct: 486 LRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMT 545 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275 L+ + L + L LF G+ +V + T + +L+ Sbjct: 546 LEREAHDLAGQPF-NLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQLADDYPLP 604 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L S + L V+ GR+ + A TGR + QN+P Sbjct: 605 KLLLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVA-VTGRLASSEPNLQNIP--- 660 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R+ IA +V AD + IE R++A ++ Sbjct: 661 ---------------------IRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSS 699 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +++FA GED++ T A+ F +V+ EQR KV+ L Y A Sbjct: 700 DARLLQSFAEGEDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAH-----GLA 754 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L L++ + F + ++ + + + + G L Sbjct: 755 KNLGLERAAAAAYIDRYFARYPGVAAYMERTRSEARARGYVETVYGRRLYL--------- 805 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + ++ Sbjct: 806 PEIRASQAGRRQAAERAAINAPMQGTAADLIKKAMI------------------------ 841 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 AT + + + +L +V Sbjct: 842 --------ATRRWLADAALRSRLV----------------LQVHDE-----------LVL 866 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P +V TL LMT +PL E + + Sbjct: 867 EVPRDELETVRATLPGLMTGIAD--LSVPLLVEVGHGENW 904 >gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23] gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23] Length = 949 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 90/696 (12%), Positives = 183/696 (26%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K + Y + Sbjct: 744 MIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + FE + + + E + + L + Sbjct: 799 NVDRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ R Y TE +QA ++L VHDE+ P Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + ++ +PLKA+ K + Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 98/696 (14%), Positives = 195/696 (28%), Gaps = 153/696 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 L +D ET S + QA + +++ + DR + M + Sbjct: 374 ILSLDTETTSTNTM----------QAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIFK 423 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 ++ ++ + N ++ + + GI+I K + T + L ++ Sbjct: 424 PLYEEDKILKIGQNIKYDYEVLAQY-GINIKGKMF-DTMIAHYLIQPELHHNMDYMAETL 481 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ G K + + + Y EY D + T +L+ Sbjct: 482 LNYKTIHIDELIGAKGKEQKNMRNLSPTSIY---------------EYACEDADITLQLY 526 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L+P D E L + + G +D D + + + + + + I Sbjct: 527 NVLLPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQI 586 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 + + + LF I + ++ T + +L + IL Sbjct: 587 YEQAGEKF-NISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEASSPIVRNIL 645 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N ++ L + ++ GR+ + + TGR S QN+P Sbjct: 646 NYRGIKKLLGTYVDALPKLINKRTGRIHTSFNQA-LTATGRLSSSDPNLQNIP------- 697 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I AD + IE R++A ++ ++ Sbjct: 698 -----------------VRTDDGKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKDENM 740 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G DI+ T AK ++ P++ V+ QR K + Y T + Sbjct: 741 IEAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYG-----ITTYGLAQRMG 795 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + F + + ++ + + + G R + Sbjct: 796 IPNNEAKKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGR---------RRYLNDIN 846 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + Sbjct: 847 SKNSTVRGFAERNA----------------------------------------INAPIQ 866 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 ++ R Y ENI ++L VHDE+ Sbjct: 867 GTEADIIKVAMIRIYERFCRENI-------------------RSKMILQVHDELNFSVFP 907 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL A+ K + Sbjct: 908 DEKERVEHIVLEEMQAACT--LSVPLIADAGWGKNW 941 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 110/694 (15%), Positives = 190/694 (27%), Gaps = 135/694 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 398 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 447 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 448 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 505 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + Sbjct: 506 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLR--AQMD 563 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E E+++++ E + + + G +ID + + + E KL+++ Sbjct: 564 EKQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 617 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 618 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 676 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 677 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 726 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 727 ---------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 771 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 772 AFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 826 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 827 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 877 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G ++ P L Sbjct: 878 NANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELL------------ 925 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 Q+ M +VL E +T Sbjct: 926 ----------------------QS------KLIM-QVHDE---LVL--------EVVETE 945 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 946 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 979 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 111/722 (15%), Positives = 189/722 (26%), Gaps = 191/722 (26%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + +D ET + A A + + A + Sbjct: 408 VAVDTETSALD----------AVGADLVGISLATGPGAACYIPLGHGNTTDMFAERPRQI 457 Query: 52 ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---- 104 + L L D++V+ V N ++ + + I T V++ Sbjct: 458 DKARALALLKPLLEDDSVLKVGQNIKYDLTVLARH---GIAVAPIDDTMVMSFCLDAGRG 514 Query: 105 ----LPSSLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + L + K G K I+ D+ Sbjct: 515 EPMPFGHGMDELAERHLGHTTIKFKDVAGTGKKAISFAEVPLPDAT-------------- 560 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207 Y D E T L L P E R L + T+ G ++D + + Sbjct: 561 ---RYAAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLA 617 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKS 263 L A L+ I + L LF G T +S Sbjct: 618 TLSGEFATRIAALESVIHEKAGTTFT-IGSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQS 676 Query: 264 ILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L L+L S + L A++ GR+ + GA +TGR S Sbjct: 677 VLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVGA-QTGRLS 735 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R +A G L+ AD Sbjct: 736 SNDPNLQNIP------------------------VRTEIGRQIRDAFVAEPGHVLLSADY 771 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+ A IA +AFA+GEDI+ T + F +V+++ R K + A+ Y Sbjct: 772 SQIELRLAAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILY 827 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 A + Sbjct: 828 GISRWGL--------------------------------------------ATRLGTSAD 843 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + G+ + + E Sbjct: 844 EAQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLF----------------------- 880 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 R+ + + + R +Q DI+ M T Sbjct: 881 ---GRKTWFPRIASKTQAERAGS---ERAAINAP------IQGTCADIIKRAMARMTPAL 928 Query: 619 -KNGY---DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAK 671 + G ++L VHDE+V E P++ + + +M A +PL E Sbjct: 929 VEAGLGHVRMLLQVHDELVFELPESDVAAASAVIERVMATAAEPAVKLSVPLGVEIGTGP 988 Query: 672 RY 673 + Sbjct: 989 SW 990 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 188/694 (27%), Gaps = 143/694 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I+ + Y A+ + D Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQMDDK 520 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 521 QLEM--------YEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAA 572 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 573 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 631 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S D R+ T A TGR + QN+P Sbjct: 632 RSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 681 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 682 ---------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 726 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 727 AFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 781 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 782 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 832 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G I P Sbjct: 833 NANARAGAERAA---------------------------INAPM---------------Q 850 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 TA+ + R + + M +VL E +T Sbjct: 851 GTASDLIKRAMINVRNWLSDGI-GS-----KLVM-QVHDE---LVL--------EVVETE 892 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 893 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 115/720 (15%), Positives = 203/720 (28%), Gaps = 167/720 (23%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------- 50 + + +D ET + P A + W + + Sbjct: 385 LKPVALDTETTALNPFC----------AELVGLGVCWGEGLQDLAYIPIGHHPPAELLEA 434 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 A+ + +L N+ ++R++ + G+ + + T + Sbjct: 435 EAACQLPLEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH-GLALEGV-VMDTLLADYL 492 Query: 103 NGL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L+ + GK A Sbjct: 493 RDAAAKHGLEVMAEREFKITPTGFSELVGKGQ------------------TFADVAIPTA 534 Query: 160 GEYCKRDVEATRELFK-----------RLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVL 207 YC DV TR L +L+PL + E+ L + + G RIDL + Sbjct: 535 SLYCGMDVHLTRRLALRLRAQLEDMGAKLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQ 594 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262 L + + ++L+E + + L LF G++ T Sbjct: 595 TLSVELGETLERLEEQAREAAGVDF-NLASPKQLGELLFETLGLNRKKSRRTKTGWSTDA 653 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 ++L L+L S ++ L + V S GR+ + TGR S Sbjct: 654 NVLEKLEADHPVVPLVLEHRVLSKLRSTYVDALPQLVESETGRVHTDFNQAV-TATGRLS 712 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P S +R + +L+ AD Sbjct: 713 SSNPNLQNIP------------------------IRTEFSRRIRKAFLPQENWQLLSADY 748 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+L ++GE+ +AF NG+D++ T D+VS ++R +GK + + Y Sbjct: 749 SQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTINFGVIY 806 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GA+ F + Q + + + + + + + L+G Sbjct: 807 GMGAQRF-----ARSTGVSQAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLGR 861 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 L K + I Sbjct: 862 RRPFHFDR-------------------------------------NGLGRLLGKDPMDID 884 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 L +RR +Q +R +Q S DI+ M + Sbjct: 885 LDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKL 925 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E T V L M K +PL E + Sbjct: 926 TAADLPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKAVE--LSVPLVVETGIGDNWM 983 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 197/704 (27%), Gaps = 170/704 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----EQSAMPSDLLQ 59 +D ET S A + + + + + L Sbjct: 379 FAVDTETTSLDTFT----------AELAGISCSVKPGEAFFVYFGTPGLDAKTTVARLKP 428 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 L + + N ++ ++ KK G+++ + T + + +L + L Sbjct: 429 LLENPEIPKTGQNLKYDILVLKKY-GVELAPVGF-DTMLASYVLNPEARHNLDDMAALYL 486 Query: 117 NFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 GK I F +Y +D + L Sbjct: 487 GRQTTKYTELVGTGKQTIGIFEVEPRK-----------------LSDYACQDADIALRLR 529 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L + + +G ID + +L + E L E Sbjct: 530 YSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTER 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I + T G + L LF + + ++ T +L + +L Sbjct: 590 IFEAT-GETFNIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLE 648 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L + ++ GR+ + + TGR S QN+P Sbjct: 649 YRSLQKLKSTYIEALPKMINPLTGRVHTSFNQS-ITATGRLSSSNPNLQNIP-------- 699 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I S G L+ AD + IE R+ A ++G+ Sbjct: 700 ----------------IRTELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPML 743 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF N EDI+ T F+T +++ + R K + G+ Sbjct: 744 IEAFRNHEDIHAATARVIFDT--KEITPDMRRKAKEVN--------------FGVLYGIQ 787 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 SQ + + + + AK+ G+ Sbjct: 788 PFGLSQR------------------------------LGIPQKEAKEIIDTYMAKYPGMF 817 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + E + RR D+ S Sbjct: 818 SSLQTIIEEAKKKGYVTTLM--------------------------GRRRYVPDLNSANS 851 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + A ++ +Q + DI+ M + ++ ++L VHDE+ Sbjct: 852 NIRKAAERVT---------MNTPIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDEL 902 Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673 + E P + + M + S K +P++ + K + Sbjct: 903 LFEMPPDEEARLREMVERNMIEAASKCGLKNVPVEVDTGSGKNW 946 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 365 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 188/694 (27%), Gaps = 143/694 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I+ + Y A+ + D Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQMDDK 520 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 521 QLEM--------YEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAA 572 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 573 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 631 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S D R+ T A TGR + QN+P Sbjct: 632 RSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 681 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 682 ---------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 726 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 727 AFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 781 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 782 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 832 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G I P Sbjct: 833 NANARAGAERAA---------------------------INAPM---------------Q 850 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 TA+ + R + + M +VL E +T Sbjct: 851 GTASDLIKRAMINVRNWLSDGI-GS-----KLVM-QVHDE---LVL--------EVVETE 892 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 893 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 114/707 (16%), Positives = 203/707 (28%), Gaps = 155/707 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 + D ET S A+ A + A+A D+ E A+ + Sbjct: 364 EFCFDTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFK 413 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 + DE++ +A N ++ ++ K GI+ P ++ T + + ++ Sbjct: 414 EVFEDESIGKIAQNLKYDWVVLKNY-GIE-PKGKFFDTMLAHYLLQPDMRHNMDVLAKSY 471 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN+ GK + D T A D + + + Sbjct: 472 LNYEPVEITSLIGKKGKKQGSM--RDVELDKITEYAGEDADITLQLKEIFDAQIKAQDLR 529 Query: 176 RLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 P + E L + T+ G R+D + + KL + +A+E L+E Sbjct: 530 HPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKELAKEVVVLEEK 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLI 278 I K+ G + L LF + T + IL I Sbjct: 590 IYKIA-GEQFNIASPKQLGEILFGKLQLDPKAKKTKSGQYATGEEILVKLADKNEIVQHI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ ++ L E V+ G + + A TGR S QN+P Sbjct: 649 LDFRGLQKLKNTYVDALPELVNKKTGLIHTSYNQAVA-ATGRLSSTNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 VR I + L+ AD + IE R++A + + Sbjct: 702 ------------------IRTAQGREVRRAFIPRSDEFVLLAADYSQIELRIMAEFSQDA 743 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 IKAF NGEDI+ TT +K + P+D+V + R K G Sbjct: 744 TMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTAN--------------FGIIYG 789 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + KA+ + Sbjct: 790 IS------------------------------AHGLSERLNIPRKEAGEIIKAYFEEFPA 819 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V Q D+ + RR ++ Sbjct: 820 VKQYMDDMINKAREQEYVETIL--------------------------GRRRYLRNINSR 853 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHD 630 + + +Q + D++ M + ++L VHD Sbjct: 854 NAVERGNAERN---------AINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHD 904 Query: 631 EIVSETPDTPYFSVG-TLCSLMTKNPSWA---KGLPLKAEGYEAKRY 673 E+V + + + LM S +P++ E E + Sbjct: 905 ELVFDAHKDELGILKPAIVDLMKNALSSINRTMQVPMEVEVGEGTTW 951 >gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.] Length = 912 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 102/702 (14%), Positives = 187/702 (26%), Gaps = 157/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDL--- 57 + +D ET S PL A + + + + +P L Sbjct: 334 NHFALDTETTSENPLK----------AKLVGISVSLKANEAFYIPLAHKYEGVPKQLDMN 383 Query: 58 ------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SS 108 + + + N ++ I+ K+ GIDI + T + + + Sbjct: 384 ETLNMLKGVFENPDIKKIGQNIKYDWIVLKRH-GIDIAGV-YSDTMIASYLINPSKRAHN 441 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L + + GK + Y D Sbjct: 442 LDQIALDFLGHKKITFEETVGKK---------------KPESGFSNVPLEKAVSYACEDA 486 Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L P + E L + + +G +D + + +L + Q+ Sbjct: 487 DITLMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQI 546 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQ 272 + L+E+I + + + L LF + T +L+ Sbjct: 547 EDLEENIYSVAGMTF-NIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNH 605 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L S + L E R+ + + TGR S QN+P Sbjct: 606 ELPALVLRHRTLSKLKSTYTDALLEIADPETERIHTSFNQTV-TATGRLSSSNPNLQNIP 664 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +RS + G KL+ AD + IE R+LA Sbjct: 665 ------------------------VKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAH 700 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 A ++ I AF EDI+ T + F + ++ E R K + ++ Y Sbjct: 701 CAEDEILINAFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYG-----ISAF 755 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + L + Q + F +++ + L+G Sbjct: 756 SLSKDLGISQKMAQTYINNYFARYKEVKRFIDKTISDAHVNKKTSTLLGRI--------- 806 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + K + + ++ Sbjct: 807 RLLPDIDSSNKIVIAAAERIAVNTPIQGTAADLI---------------------KIAMI 845 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 ++ + L M +L+VHDE Sbjct: 846 NIDKAFTEKK----------------------------LKAAM----------LLSVHDE 867 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E P V L M +N W +PLK + + Sbjct: 868 LVFEVPPDELDMVSDLVKNMMENV-WTLKVPLKVNISSGENW 908 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 201/700 (28%), Gaps = 154/700 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + ID ET S P+ A + +++ + + ++ Sbjct: 365 KPISIDTETTSQDPMM----------AELLGISFSEEPGVAYYIAFSHSESIYSHLLPSA 414 Query: 54 ---PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107 L L D + N ++ ++ K GI++ + T + + Sbjct: 415 EESLKILKPMLEDSNWKKIGQNIKYDLLVLKNY-GIELKGI-YFDTMLASYLLNPGERRH 472 Query: 108 SLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 ++ + LN+ + GK + Y C A+ + Sbjct: 473 NMDDMAVDYLNYKTITYEELVGTGKKKQNLYDIDPDKVSEYACEDAD-----ITLQLHNV 527 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + K+L + E + L + G +D L + K+ +++I Sbjct: 528 LSPKMDENIHKKLF--YEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKEHEKNI 585 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNR 281 G + T L+ LF + + T S+L T D +L+ Sbjct: 586 H-FYAGRQFNVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPIIDDLLSI 644 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S +TL V+ R+ + A TGR S QN+P Sbjct: 645 RKFSKLKSTYTDTLPLLVNPKTKRIHTSYNQTIA-ATGRLSSTNPNLQNIP--------- 694 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA G +++ D + IE R++A + + I Sbjct: 695 ---------------IKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAHFSNDPNMID 739 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ +G DI+ T A F P D+V+ + R KV+ ++ Y + L Sbjct: 740 AYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYG-----VTSFGLSNNL--- 791 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 ++ + + + A ++GV Sbjct: 792 ------------------------------------RISRKEAKEFIEKYFAAYKGVATY 815 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 +++ E + RR D+ + Sbjct: 816 MEEIVEFCKQNGYVETLL--------------------------GRRRYLPDIHSSHKMV 849 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 + ++ + +Q S D++ M + ++L VHDE+V Sbjct: 850 SEGAKRV---------AINSPIQGTSADMIKIAMIQIHEKIKKESFRSKLLLQVHDELVF 900 Query: 635 ET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P M +P+ +G + Sbjct: 901 EVDPKEKKEFFQMAKEEMESAMK--LKVPIVVQGKFGGNW 938 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 197/698 (28%), Gaps = 162/698 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60 + D ET A I A D + ++ + Sbjct: 469 VSFDTETTGLD----------VRSATIVGLGLAIRDHHAWYIPFNSDLDKEEILKEIKPF 518 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LAL 116 D ++ A N+ F+ + GI++ + + T V + L + L Sbjct: 519 FADSSLKFFAQNAKFDLQML-HYAGIEVKNIDF-DTLVASFICNPSRQFHDLDSLSLHYL 576 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ + T+ GK + + YC DV+ T L Sbjct: 577 NYRKISTESLIGKGKKQ---------------ISMADLPVERVATYCCEDVDITLRLRNE 621 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + + L + + + G I+L + K+ + E KK +E I Sbjct: 622 LEAELHRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHA 681 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + + + LF G+ + T +L + IL Sbjct: 682 LAGHEF-NINSPKQVGVVLFEEMGLKAGKKTATGYSTSAEVLENLAAESEIVRAILRHRT 740 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + L + VS D R+ A TGR + QN+P Sbjct: 741 LSKLISTYADALPKEVSELDQRIHTRFSQTTA-ATGRLASTQPNLQNIP----------- 788 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +RS A G + D + IE R++A ++ + ++AF Sbjct: 789 -------------TRTAEGKSIRSAFQAPEGHHFISCDYSQIELRIMAELSQDPGLLEAF 835 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 N D++ T + F T + +V+K+QR Sbjct: 836 NNDFDVHTHTASLVFETELSEVTKQQRYAA------------------------------ 865 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 +A + + A + + + + ++ V + Sbjct: 866 --------------KAVNFGIMFGQGPYGLAKEIGVSADEAKQFISNYFKRYPDVQKFMA 911 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 E S RR ++ + + Sbjct: 912 KCVEDARDKGYSETSF--------------------------GRRRYLPEMLSSNGRIRS 945 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 ++ + +Q + DI+ M ++L +HDE++ E Sbjct: 946 GAERIS---------VNSPIQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEV 996 Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 PD + L +MT P +PLK + AK + Sbjct: 997 PDDELEIMKELIPQIMTDIPQ--IKVPLKVDCAAAKSW 1032 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 96/699 (13%), Positives = 183/699 (26%), Gaps = 158/699 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET P+ A + +++ + + + Sbjct: 331 SLDTETTGLDPMR----------AELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVL 380 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L +L D + + N F+R +F GI + T + + P + N Sbjct: 381 EKLKPWLTDPSAPKLGQNLKFDRHVFANH-GIGLKGI-VHDTLLQSYVFESHRPHDMDNL 438 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L GK + +Y D + T Sbjct: 439 ALRHLGIKTITYDEVTGKG---------------AARIGFEQVDIERAAQYAAEDADVTL 483 Query: 172 ELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L E + + + G +D+ L+ + ++ L Sbjct: 484 QLHQHLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLAL 543 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 +E + + ++ LF + T + +L + Sbjct: 544 EERACTIAGLPF-NLNSPKQIQEILFDRLKLPVMKKTPSGVPSTDEDVLQKLALDYPLAR 602 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L+ + + L V GR+ A TGR + QN+P Sbjct: 603 ALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVA-VTGRLASNEPNLQNIP---- 657 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA +G +++ AD + IE R++A I+ + Sbjct: 658 --------------------IRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQD 697 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +KAFA GEDI+ T ++ F P++ V+ EQR K++ L Y Sbjct: 698 AGLLKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMS-----EFGLAT 752 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L +++ + F + + + E + + G L Sbjct: 753 QLGIERAAARTYMDRYFSRYPGVADYMQRTRKTARENRYVETVFGRRLWL---------S 803 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + +L +V Sbjct: 804 EINSSNGMRRQAAERAAINAPMQGTAADII---------------------KLAMIEVHD 842 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +R KL +VL E Sbjct: 843 -----------WLRRHELRSKLVM----------------QVHDE---LVL--------E 864 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ ++ L LM +PL E + Sbjct: 865 VPENEIETIKRELPLLMGNVAQ--LQVPLLVEVGVGPNW 901 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 194/694 (27%), Gaps = 142/694 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 352 TIGIDTETTSLD----------AMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 402 VLGRLKPHLENPVLKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + D Sbjct: 460 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 518 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E+++++ E + + + G +ID + + + E KL+++ Sbjct: 519 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 571 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 572 ASQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 630 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 631 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 680 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 681 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 725 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + L Y G L + Sbjct: 726 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 780 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 781 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNK 831 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G ++ R LV D+K Sbjct: 832 NANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDLKSKL--- 876 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 I+Q +VL E P+ Sbjct: 877 --------------------IMQ-------------VHDE---LVL--------EVPEAE 892 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 893 LDLVKEKLPQIMAKVDEGMLKVPLVAEVGVGENW 926 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 188/694 (27%), Gaps = 143/694 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 331 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + + L L Sbjct: 381 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNNIA-GDAMLASYIIESHLGHGLD 438 Query: 111 NAC-LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I+ + Y A+ + D Sbjct: 439 ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQMDDK 498 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E + + + G +ID + + + E KL+++ Sbjct: 499 QLEM--------YEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAA 550 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 551 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 609 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S D R+ T A TGR + QN+P Sbjct: 610 RSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 659 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 660 ---------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIA 704 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 705 AFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 759 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 760 NLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNK 810 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G I P Sbjct: 811 NANARAGAERAA---------------------------INAPM---------------Q 828 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 TA+ + R + + M +VL E +T Sbjct: 829 GTASDLIKRAMINVRNWLSDGI-GS-----KLVM-QVHDE---LVL--------EVVETE 870 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 871 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 113/701 (16%), Positives = 189/701 (26%), Gaps = 156/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L + +S D R+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F T + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ R LV D+ Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDL 873 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 K I+Q +VL Sbjct: 874 KSKL-----------------------IMQ-------------VHDE---LVL------- 887 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T V L +M K +PL AE + + Sbjct: 888 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 189/692 (27%), Gaps = 131/692 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGLD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F+ + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ P L Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 882 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E +T Sbjct: 883 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 902 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 903 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 193/706 (27%), Gaps = 169/706 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A I +++ + + Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVL 413 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112 + L +L D + + + +++ +F GI + T + + P +L + Sbjct: 414 ARLRPWLEDASRKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L N S + GK Y D + T Sbjct: 472 ALRHVNRSGISYEDLCGKGKSQ---------------IPFAQVPVDKAAAYSCEDSDQTL 516 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ L P + E I G ID + + + KL+ Sbjct: 517 DVHNTLWPRIQVHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLE 576 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 E+ ++ + L F G+ +V + T + +L Sbjct: 577 EEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 635 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + S + L++ DGR+ A TGR S QN+P Sbjct: 636 LLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 689 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A GK + AD + IE R++A ++G++ Sbjct: 690 -------------------VRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDE 730 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF NG D++ T A+ F +D+VS EQ Sbjct: 731 ALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQ---------------------------- 762 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + L A + A + ++ G Sbjct: 763 ----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYPG 806 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + E RRLV ++ G Sbjct: 807 VKRYMDQTVELAHAQGYVETVF--------------------------GRRLVLPEINGG 840 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 R +Q + D++ + M +++ VHD Sbjct: 841 N---GPRKKAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHD 891 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V E P+ V + ++M +PL AE + K Sbjct: 892 ELVFELPEAARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935 >gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] Length = 949 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 89/696 (12%), Positives = 184/696 (26%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GATVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDVY---------------LYACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + T + V + R K + Y + Sbjct: 744 MIDAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + FE + +++ E + + L + Sbjct: 799 NVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ R Y E +QA ++L VHDE+ P Sbjct: 870 QGSAADIIKVAMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVP 910 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + ++ +PLKA+ + + Sbjct: 911 VNEKERVEEIVIE-EMEKAYRMHVPLKADCGWGRNW 945 >gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] Length = 949 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 89/696 (12%), Positives = 180/696 (25%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G+ + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GVQVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + G K + + Y Y D + T +L Sbjct: 485 YLRYQTIHIDELIGPKGKNQKNMRDLAPKDVYR---------------YACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + + ++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278 I +L G + + LF T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K + Y + Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISV-----FGLAERM 798 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++++ FE + +++ E + + L + Sbjct: 799 NVERKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDI 849 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 850 NSRNAVVRGYAERNA----------------------------------------INAPI 869 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ R Y TE +QA ++L VHDE+ P Sbjct: 870 QGSAADIIKVAMARIYQRFQTEG-IQA------------------KMILQVHDELNFSVP 910 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + ++ +PLKA+ K + Sbjct: 911 VEEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 115/701 (16%), Positives = 191/701 (27%), Gaps = 156/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDSMLASYIIESHLGHGLD 460 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 461 ELSGRWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F T + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ R LV D+ Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDL 873 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 K I+Q +VL Sbjct: 874 KSKL-----------------------IMQ-------------VHDE---LVL------- 887 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T V L +M K +PL AE + + Sbjct: 888 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 927 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 98/695 (14%), Positives = 187/695 (26%), Gaps = 149/695 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 L +D ET S + A + +A ++ DR E + Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 D +++ + N ++ + K G+ + + T + L ++ Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L K LI K D EY D + T +L Sbjct: 456 LLH----YKTIHIDELIGPRGKHQKSMRDLDPKD---------VYEYAAEDADITLQLKN 502 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E L + + G R+D D + + + +L++ I Sbjct: 503 VLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIY 562 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + + LF I + ++ T + +L IL+ Sbjct: 563 EKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHPIVADILD 621 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L + ++ G + + + TGR S QN+P Sbjct: 622 YRGLKKLLGTYVEALPKLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP-------- 672 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R C + AD + IE R++A ++G++ I Sbjct: 673 ----------------VRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G DI+ T AK ++ I V+ E+R K + Y T +++ Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEI 771 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 F + + ++ +++ + L G R + Sbjct: 772 DNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGR---------RRYLPDITS 822 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + Sbjct: 823 KNGTVRGFAERNA----------------------------------------INAPIQG 842 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 ++ R + ENI ++L VHDE+ Sbjct: 843 SEADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPD 883 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL A+ K + Sbjct: 884 EKERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 108/720 (15%), Positives = 195/720 (27%), Gaps = 165/720 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTE------------ 49 + +D ET P A + W + + Sbjct: 401 VAVDTETSDLNPFK----------AQLVGVGVCWGADLKDLAYIPVGHMAPAAPDGEDAA 450 Query: 50 QSA-------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L +L N+ ++R++ + G+ + + T + Sbjct: 451 GEPEQLALDAVLQALAPWLASSDHPKALQNAKYDRLILLRH-GLTL-GGVVMDTLLADYL 508 Query: 103 NGL--PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L + L GKA + + Sbjct: 509 RDAAAKHGLDLMAQRDYGITPTLFTDLVGKAKDGKAS-------------SFAAVPVDQA 555 Query: 160 GEYCKRDVEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVL 207 YC DV TR L L E L + + G RID+ + Sbjct: 556 ALYCAMDVHLTRRLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQ 615 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262 +L + ++L+ + + G + L LF G++ T Sbjct: 616 ELSAELGATLERLETEAQDVV-GTSFNLASPKQLGELLFDTLGLNRKKSRRTKTGWSTDA 674 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 ++L L+L S + L + V + GR+ + TGR S Sbjct: 675 TVLEKLEGDHPVVPLLLEHRVLSKLKSTYVEALPQLVEAETGRVHTDFNQAV-TATGRLS 733 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P S +R + G +L+ AD Sbjct: 734 SSNPNLQNIP------------------------VRTEFSRRIRKAFLPQEGWQLLSADY 769 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+L ++GE+ +A+ +G+D++ T D+VS ++R +GK + + Y Sbjct: 770 SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIY 827 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GA+ F + Q + + + + + + ++G Sbjct: 828 GMGAQRF-----ARETGVSQVVAKDFLAKYKQRYPKVFAFLELQERLALSRGYVETILGR 882 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 L K + I Sbjct: 883 RRPFHFDR-------------------------------------NGLGRLLGKDPLEID 905 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 L +RR +Q +R +Q S DI+ M Sbjct: 906 LDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTAL 946 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E +V L M + +PL E + Sbjct: 947 QQQGLPAQLLLQVHDELVLEVEPAALDTVRQLVVQTMENAMT--LSVPLVVETGSGANWM 1004 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 119/702 (16%), Positives = 207/702 (29%), Gaps = 136/702 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52 + D ET + +P A + W + Sbjct: 385 KPVAWDTETTALEP----------RDAALVGIGCCWGTGSDEAAYIPVGHKIGHNLQLDL 434 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + S L L + N+ F+R++FK GI++ T + + +L Sbjct: 435 VVSALRPILENANYPKTFQNAKFDRLIFK-CQGINL-VGVVFDTMLASYLINPDTTHNLS 492 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L L K K D Q + F K E Sbjct: 493 DLSLRNLGLQLTEYNDIVTKTGKKELQKNIADIGIDIVAYYCGTQVYATFQLVDKLRCEL 552 Query: 170 --TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T +L K L+ + E+ L + + G RI+ + +L + + E KL+ ++ Sbjct: 553 NKTPDLAKLLV---EVEQPLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEI 609 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLAKDLI 278 + L LF G+ TL+ L + T +I Sbjct: 610 ASEKF-NLDSPKQLSYILFDKLGLSTKYSRKIQTGYSTDAATLEK-LQEVDNTGFVDAII 667 Query: 279 LNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 R +S + ++ L V RL A+ TGR S QN+P Sbjct: 668 EYRTSSKLKST-YVDALPALVHPQSQRLHTDFNQT-ATSTGRLSSSNPNLQNIP------ 719 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 S +R + +G +V AD + IE R+LA ++ E Sbjct: 720 ------------------IRTAFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPV 761 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++A+ EDI+ T F D+V+ E+R K + + Y G+ A G+ Sbjct: 762 LVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGMGSLK---FARSTGV 816 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D + + N E + Q ++ ++ + + ++G Sbjct: 817 D--KANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETILGRRRYF------------ 862 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 L + I L + L + Sbjct: 863 -------------------------DFTSKSLKELKGISLEDIDLSRLKNLGAYNAGLLR 897 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIV 633 S N Q S DI+ M + ++L VHDE+V Sbjct: 898 SAANAPI------------------QGSSADIIKIAMVQLHEVLRNYQARLLLQVHDELV 939 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 E P + + + S+M S +PL + + Sbjct: 940 FEVPPQEWGELQLQIKSVMENAMS--LSVPLVVDVRAGDNWM 979 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 98/695 (14%), Positives = 187/695 (26%), Gaps = 149/695 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 L +D ET S + A + +A ++ DR E + Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYVAIPNDREEALQYVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 D +++ + N ++ + K G+ + + T + L ++ Sbjct: 398 KPVYEDPSILKIGQNLKYDYEVLKNY-GVTL-GGKMFDTMLAHYVIQPELHHNMDYMAET 455 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L K LI K D EY D + T +L Sbjct: 456 LLH----YKTIHIDELIGPRGKHQKSMRDLDPKD---------VYEYAAEDADITLQLKN 502 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E L + + G R+D D + + + +L++ I Sbjct: 503 VLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNRLEQQIY 562 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + + LF I + ++ T + +L IL+ Sbjct: 563 EKA-GETFNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPIVADILD 621 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L + ++ G + + + TGR S QN+P Sbjct: 622 YRGLKKLLGTYVEALPKLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP-------- 672 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R C + AD + IE R++A ++G++ I Sbjct: 673 ----------------VRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G DI+ T AK ++ I V+ E+R K + Y T +++ Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYG-----ITTYGLAQRMEI 771 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 F + + ++ +++ + L G R + Sbjct: 772 DNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGR---------RRYLPDITS 822 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + Sbjct: 823 KNGTVRGFAERNA----------------------------------------INAPIQG 842 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 ++ R + ENI ++L VHDE+ Sbjct: 843 SEADIIKIAMIRIWQRFRAENI-------------------RSKMILQVHDELNFSVYPD 883 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL A+ K + Sbjct: 884 EKERVEKIVLEEMQGA--YQLQVPLIADAGWGKNW 916 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 100/705 (14%), Positives = 194/705 (27%), Gaps = 163/705 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP----VKLWDRTEQS-------- 51 D ET L A + ++A Sbjct: 350 FSFDTETDGLDTLT----------ANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLD 399 Query: 52 --AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + + L L D + + N F+R + + + + T + + Sbjct: 400 LHEVLTALKPLLEDANLPKIGQNLKFDRGVLARY-DVVLEGI-VFDTMLESYVLNSVAGR 457 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + L++ + GK + + +Y Sbjct: 458 HDMDSLAERHLSYKTTTFEDIAGKGKKQL---------------TFNQIPLEEAAKYAAE 502 Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + + P E L + + G ID + + I Sbjct: 503 DADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLIDARTLAEHSREIT 562 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI 270 +L++ L D + L++ LF + + + T + +L Sbjct: 563 VRLDELEKSAYALADEEF-NLASPKQLQVILFEKMKLPVLKKTPNGAPSTNEEVLEELAE 621 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +IL + + L + V+ R+ + + TGR S QN Sbjct: 622 NHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAV-TATGRLSSRDPNLQN 680 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R IA G +++ AD + IE R++ Sbjct: 681 IP------------------------VRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIM 716 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y Sbjct: 717 AHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMS----- 771 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + FE + ++ + Q E + L G L + Sbjct: 772 AFGLSRQLGIPRGEAQRYMDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIK 831 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 R + K +G + A++ +L M + P+ R Sbjct: 832 SRNAMRR-----KASEREAINAPMQGTA------ADIIKLAMIAVDDWIVSEKPNVR--- 877 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 I+Q +V VH Sbjct: 878 ------------------------------MIMQ-------------VHDE---LVFEVH 891 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + +LM ++ +PLK + + Sbjct: 892 --------ESELAMAEQKIRALMEQSM--LLDVPLKVDVGIGDNW 926 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 191/701 (27%), Gaps = 164/701 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 + D ET A A + +++ + + + Sbjct: 366 ISFDTETTGTD----------ANLAELVGLSFSVKPGAGYYIPLPPERTLAQPILDEFKV 415 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 L +E + + N ++ ++ K G++I K T + ++ L Sbjct: 416 VLENENIAKIGQNIKYDMLILKWY-GLEIKGK-LFDTMLAHYLIDPDTRHNMDVLSENYL 473 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +S G + +Y D + T +L Sbjct: 474 CYSPISITKLIGPKGKNQG--------------NMRDVPVAQVVDYAAEDADVTLQLANV 519 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P+ + E L + I G RID++ ++ + + + +K ++++ Sbjct: 520 FRPMLKDLNAEQLATEVENPLIYVLADIESEGVRIDIETLVNYSKELETDIRKFEKNVYD 579 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILNR 281 + L LF +D ++ T + +L IL+ Sbjct: 580 KCGVEF-NLASPKQLGEVLFDRLQLDPKAKKTKTGQYQTGEDVLLALASKSDIVQDILDF 638 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L V+ GR+ + A TGR S QN+P Sbjct: 639 RQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP--------- 688 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR I L+ AD + IE R++A I+ E+ + Sbjct: 689 ---------------IRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENML 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G DI+ T AK + I++V+ QR Sbjct: 734 QAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNA--------------------------- 766 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +A + + + + + + ++ G+ + Sbjct: 767 -----------------KAVNFGIIYGQSAFGLSQSLGIPRKEAAEIIDQYFTQYPGIKK 809 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 D + RR D+ Sbjct: 810 YMSDTMNFARENG--------------------------FVETILGRRRYLRDINSANQ- 842 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633 T R +Q + D++ M N K + + VHDE+V Sbjct: 843 --TVRGFAERNAINAP------IQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELV 894 Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + T + + S M A +P++ E + + Sbjct: 895 FDVLKTEVDEMKEIISHRMKTAI--ATTVPIEIEIGQGNNW 933 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 105/718 (14%), Positives = 194/718 (27%), Gaps = 180/718 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 D ET S P+ QA + + A Sbjct: 337 YFSFDTETTSLDPM----------QAKLIGFSLALQPGKAAYIPLEHVAGEDDLWGDRRI 386 Query: 50 -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 + L L ++ ++ + N ++ ++ K+ +I + + T +L+ Sbjct: 387 VQQIETQKALALLKPILENQAILKIGQNIKYDWLVMKQY---NIVMRSFDDTMLLSYALE 443 Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L K + + Sbjct: 444 AGISTHGMDILSERWLGHKSITYKDLT---------------YNGRKVNSFAQIDLKQAT 488 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P +R L + + +RG +D ++ +L Sbjct: 489 LYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLS 548 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 +AQ L+E+I +L + L LF G+ ++ T L Sbjct: 549 GELAQAALNLEEEIYQLVGEKF-NIASPKQLGDILFGKIGLPGGSKTKNGQWSTSAQTLE 607 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 + I+N + + L + GR+ + TGR S Sbjct: 608 ELAAEGHILPRKIVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLAT-TSTGRLSSSE 666 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R+ IAS G L+ AD + I Sbjct: 667 PNLQNIP------------------------VRTAEGRKIRTAFIASKGYLLLSADYSQI 702 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA A +AFA G+DI+ T A+ F ++ +S E R K + Sbjct: 703 ELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINF------- 755 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ + + Sbjct: 756 -------GIIYGISPFGLANQ------------------------------LGISRKEAS 778 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + + G+ + Sbjct: 779 HYIQLYFERFPGIKDYMEKTKMFARHHGYVETIF-------------------------- 812 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RR+ ++K + R +Q + DI+ M Sbjct: 813 GRRIHCPEIKAVNP---QVRAFNERAAINAP------IQGSAADIIRRAMIQMENALEKE 863 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P + L +M P+ + +PL+ + A+ + Sbjct: 864 KLSAKMLLQVHDELIFEVPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNW 921 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 102/699 (14%), Positives = 191/699 (27%), Gaps = 155/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + Sbjct: 353 FAFDTETDGLDTLT----------ANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQV 402 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L DE ++ + N F++ + ++ ID+ + T + + + Sbjct: 403 LALFKPLLEDEKLLKIGQNLKFDKGVMQRY-DIDLRGIAF-DTMLESYVLDSVAGRHDMD 460 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 461 SLAERYLKHKTITFEEIAGKGKNQL---------------TFNQIALEQAGPYAAEDADV 505 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L L + I G ID ++ + + + Sbjct: 506 TLHLHQTLWGKLQPHADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLA 565 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLA 274 L+ +L + T L+ L+ + + + T + +L+ + Sbjct: 566 GLETQAYELAGEEF-NLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LIL + + L ++ + T + TGR S QN+P Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIP--- 681 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IAS G +V AD + IE R++A ++G Sbjct: 682 ---------------------VRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSG 720 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFANG DI+ T ++ F +DKV+ EQR K + L Y Sbjct: 721 DKGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMS-----AFGLS 775 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L++ + FE + + + + Q E L G L Sbjct: 776 RQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYL--------- 826 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + +G A++ + M + P Sbjct: 827 PDIHSRNAMARKGAERAAINAPMQGTA--ADIIKKAMISIDDWLQKDTP----------- 873 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 L + I+Q +V +HD ++ Sbjct: 874 ----------------------LVKMIMQ-------------VHDE---LVFEIHDSVI- 894 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 S+ + LM +PL+ + + Sbjct: 895 ------EESISKIKILMEGCMQ--LNVPLQVDIGTGMNW 925 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 195/702 (27%), Gaps = 164/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 + D ET +P A + A+++ E + + Sbjct: 364 EFCFDTETTDLEPT----------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEFK 413 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 + L +E + + N ++ + + G+ + K + T + ++ Sbjct: 414 EVLENEDITKIGQNLKYDIQVMRNY-GVRVQGKMF-DTMLAHYLLDPETRHNMDVMAENY 471 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN+S GK + + + EY D + T +L Sbjct: 472 LNYSPVSITDLIGKKGVKQG--------------NMRDVPVEDVVEYAGEDADITLQLKH 517 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G +ID D + K+ + + + E I Sbjct: 518 ILEKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIF 577 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 +L + L LF + D ++ T + ILS D IL Sbjct: 578 ELAGQEF-NIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILE 636 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L + +S DGR+ + A TGR S QN+P Sbjct: 637 FREYQKLKSTYVDALPKLISKKDGRVHTDYRQAVA-ATGRLSSNNPNLQNIP-------- 687 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + +L+ AD + IE R++A + ++ Sbjct: 688 ----------------IRTEKGRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAM 731 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF NG DI+ TT AK F +D V R K + G+ Sbjct: 732 MEAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNF--------------GIIYGIS 777 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + T + KA+ + V Sbjct: 778 ------------------------------AFGLAQNLNISRTEASDIIKAYFKEFPRVH 807 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + E + R+ D+ Sbjct: 808 DYMEKVKEDARANEYVTTIL--------------------------GRKRWLRDINSRNQ 841 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEI 632 + + +Q + D++ M N K +++ VHDE+ Sbjct: 842 TIRGYAERN---------AINAPIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDEL 892 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + + LM +P++ A + Sbjct: 893 IFDAHKDEIDKLKDKVVDLMKNAME--LDVPMEIGVGIADNW 932 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 102/646 (15%), Positives = 195/646 (30%), Gaps = 154/646 (23%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113 L L DE+ V N ++ + + G+++ R T + + + + Sbjct: 1 LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L S + GK + A + +Y D + T Sbjct: 59 LRFLQHSCISFEQVAGKGKNQL---------------TFNQIALEEAAQYAAEDADVTLR 103 Query: 173 LFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +R+ PL + E L + I G ID L+ + IA +L+ Sbjct: 104 LHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLE 163 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDL 277 ++ +L + L+ LF + + T + +L + + Sbjct: 164 QNAYELAGQPF-NLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKV 222 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ + + L + ++ GR+ + + TGR S QN+P Sbjct: 223 LIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSSTDPNLQNIP----- 276 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A +G K++ D + IE R++A ++G+ Sbjct: 277 -------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQ 317 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF +G+DI+ T A+ PID+VS EQR K + G Sbjct: 318 ALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF--------------GLIYG 363 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A + + + + ++ G Sbjct: 364 MS------------------------------AFGLAKQLGIPRGEAQEYMDKYFERYPG 393 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V+Q +D A + RRL + Sbjct: 394 VMQYMEDTRSRAAQLGYVETIF--------------------------GRRLHLP----E 423 Query: 577 CSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLTV 628 + N + R +Q + DI+ + M + +++ V Sbjct: 424 ITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQV 477 Query: 629 HDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E ++ + + LM A +PL AE + Sbjct: 478 HDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 521 >gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22] gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A] gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22] Length = 949 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 91/686 (13%), Positives = 183/686 (26%), Gaps = 131/686 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + D P D A + E Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKEND 541 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +RL D E L + I G +D + + + + ++++++I +L G Sbjct: 542 AERLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA-GETF 598 Query: 234 SSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF I + ++ T + +L + IL Sbjct: 599 NIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLL 658 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ GR+ + + TGR S QN+P Sbjct: 659 GTYIDALPLLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 701 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I G AD + IE R++A ++ + I AF + D Sbjct: 702 --------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHD 753 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + + V + R K + Y +++ + Sbjct: 754 IHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 808 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + +++ E + + L + + Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDINSRNAVVRGY 859 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + ++ Sbjct: 860 AERNA----------------------------------------INAPIQGSAADIIKV 879 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y E +QA ++L VHDE+ P V + Sbjct: 880 AMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVPVNEKERVEEI 920 Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ +PLKA+ K + Sbjct: 921 VIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 101/700 (14%), Positives = 194/700 (27%), Gaps = 162/700 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAMPSDLLQY 60 + D ET + I + A + + + + Sbjct: 389 EFCFDTETTG-FDIF---------NDRIVGLSLAVRPYEAWYIPFNESNTAEYAALIRPL 438 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LALN 117 D + + N F+ ++ + LG++I R T +L ++ LN Sbjct: 439 FADGKIAKIGQNIKFDLMVLAR-LGVEIRG-RLYDTMILHYLLDPESRHNMDALAMRYLN 496 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + GK + + + EY D + T L + L Sbjct: 497 YRPISITSLIGKG---------------ARQLTMDMISLERVAEYAAEDADVTLRLKQVL 541 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P + E + + I G RID + + + + + L+ DI +L Sbjct: 542 WPKVEELDLAGLYLEIEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRL 601 Query: 228 TDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRL 282 D + L LF I + M++ T + L D IL Sbjct: 602 ADEPSLNVNSARQLGEVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEYR 661 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L V+ G++ + + TGR S QN+P Sbjct: 662 GVKKLLSTYVEALPLLVNPVTGKIHTSFNQAV-TATGRLSSTNPNLQNIP---------- 710 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I S+ L+ AD + +E R++A ++G++ I Sbjct: 711 --------------VRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIA 756 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GED++ T A+ F + +V ++R K G+ Sbjct: 757 AFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTAN--------------FGIIYGISAF 802 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 SQ + + + + + + A + V + Sbjct: 803 GLSQRLD------------------------------IPRKEAKEIIEGYFASYPKVKEY 832 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E RR +D+ + Sbjct: 833 MDRVVEEAKRDGYVSTIF--------------------------GRRRYLNDIASRNAVA 866 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 + +Q + DI+ M ++ ++L VHDE+V Sbjct: 867 RGLAERN---------AVNAPIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVV 917 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + V + M A + L + + Sbjct: 918 DMLRSEQERVIAIVTEAMESAA--ALRVRLVVDCGVGDNW 955 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 111/692 (16%), Positives = 206/692 (29%), Gaps = 144/692 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDLL 58 ++ +D ET S +A + + + + + + L Sbjct: 372 RIAVDTETTSLNTF----------EAELAGISISTEARKARFIALANSSLNPQSALELLR 421 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115 L + + N ++ ++ KK GID+ + T + + +L + Sbjct: 422 PLLENPELPKTGQNLKYDILVLKKY-GIDLTPVGF-DTMLASYVLDPEEKHNLDDLAARH 479 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + + G D + A Q E ++ +E +EL Sbjct: 480 LGYKTTTFEELTGTGKAKLHIFDVEPEQLSDYACQDADLALQ-LEEIFRKKLEGEKEL-- 536 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L E L + + G ID + K E + +E + L E I + + Sbjct: 537 -LWLCEHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYAASGAPF-NI 594 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF + G+ ++ T +L +L + Sbjct: 595 DSPKQLSNILFNVLGLPTKKSTKTGFSTNVEVLEELAELHPVVASLLEYRTLQKLKTTYI 654 Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + V+ GRL + + + TGR S QN+P Sbjct: 655 DALPKIVNPLTGRLHTSFNQF-ITATGRLSSSNPNLQNIP-------------------- 693 Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I S K L+ AD + IE R+ A I+G+ I+AF N EDI+ Sbjct: 694 ----IRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRNREDIHT 749 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T F D+++ + R K + + Y L+ Sbjct: 750 ATARVIFG--SDEITPDMRRKAKEVNFGVLY-----GIMPFGLSKRLN------------ 790 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + + ++AK+ G+ Sbjct: 791 ---------------------------IPRSEAIAIIDTYKAKYPGL------------- 810 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ K+D ++ RR +D+ S + R Sbjct: 811 -------------FLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNI---QKAAERA 854 Query: 591 RTYGGKLTENIVQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M KN ++L VHDE++ ET D + Sbjct: 855 AM------NTPIQGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPL 908 Query: 645 GTLCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673 L M K +P++ + K + Sbjct: 909 ADLIEEAMIDAAIICGLKNVPVEVDTGIGKNW 940 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 104/696 (14%), Positives = 196/696 (28%), Gaps = 149/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 ID+ET S P I + ++ + + + Sbjct: 320 FAIDLETSSLDPF----------DCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L + L D V N F+ + G++ P T + A +L + Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGVE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA 427 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L + + + F +D P + A + Y ++ Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFVDVPLEKAANYSCEDADITYRLYKTLSLKLHEA 486 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 487 DLENVFYKI---EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543 Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF GI T +L LIL Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + V+ GR+ + G + TGR S QNLP Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ +V AD + IE R+LA ++G++ ++AF Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEE 697 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ FN ++V++E R A + G+ S Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 V+ + E + + + V + + Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 R+ + Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 ++ R +Q + DI+ M K +++ VHDE+V E PD Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPD 858 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PL+ + K + Sbjct: 859 EEKDALVELVKDRMMNVVK--LSVPLEVDVTIGKTW 892 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 118/704 (16%), Positives = 204/704 (28%), Gaps = 164/704 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------QSAMP 54 ID ET S P A + + + ++ + + + Sbjct: 318 KTFSIDTETTSLDPF----------SAKLVGVSISTNEGEAYYIPISHVSENNLTKEIVL 367 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKN 111 L + L E V N F+ +F GI+ P T V A +L+ Sbjct: 368 KFLKEILECERYNIVGQNLKFDYKVFM-VNGIE-PQIPHFDTMVAAYLINPEERRYNLEE 425 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + + + + EY DV+ T Sbjct: 426 LALKYLGYKMISFEELVDNNMPLFGN-------------DFSFISIEKAAEYSCEDVDIT 472 Query: 171 RELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L E L + + G D+D + +L + +E KKL+E Sbjct: 473 FRLYSYLSKYIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEE 532 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278 I +++ G + + + LF + +V + T +L LI Sbjct: 533 KIFEIS-GEQFNINSSKQVAEILFEKLKLPIVKKTATGRNSTNAEVLEELAKDYEIARLI 591 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++++ +V+ R+ + G + TGR S QNLP Sbjct: 592 LEYRKFQKLKSTYVDSIPSSVNITTNRVHSSFHQTG-TSTGRLSSSAPNLQNLP------ 644 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 +R + +V AD + IE RVLA ++ ++ Sbjct: 645 ------------------TRSEEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDE 686 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF N DI+ T +K FN V+++ R IGK++ A+ Y G Sbjct: 687 KLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISP---------YG 737 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L + L + + + +QG Sbjct: 738 LS-----------------------------------RRIGLNVNETKKIIDNYFKYYQG 762 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + K + + R+ +K Sbjct: 763 VFEFIKKTIDFAKKNG--------------------------FVKTLFGRKRFIPQLKLK 796 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 L + R VQ + DI+ M ++L VHD Sbjct: 797 NKNL---IQEGERIAI------NTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHD 847 Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P V + M +PLK + YE + + Sbjct: 848 ELVFEVPFDELQIVKEIIKDKMENAVK--LKVPLKVDLYEGREW 889 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 103/703 (14%), Positives = 197/703 (28%), Gaps = 164/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----L 57 ++ D ET S + +A I A++W+ E ++ + L Sbjct: 358 KEVCFDTETTSLDEM----------EAQIVGLAFSWEVHKGYYILFPEDFSLAKEWLSLL 407 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + E ++ + N ++ + I++ + T + ++ Sbjct: 408 KPFFEAENILKIGQNLKYDLKILANY-DIEVRG-QLFDTMIAHYLLNPDMRHNMDLLAEA 465 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L+++ + GK + +L EY D + T +L Sbjct: 466 YLSYAPVAIETLIGKKGKGQLS--------------MCSVPAELQKEYAVEDTDVTLQLK 511 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +PL + E L + + G +D + +L + I + L I Sbjct: 512 HTFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAI 571 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQLAKDLIL 279 + G + L LF + T + +LS +L Sbjct: 572 FEQA-GESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVL 630 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 A + L V+ GR+ T + TGR S QN+P Sbjct: 631 EFRALQKLQSTYTDALPREVNPRTGRIHTTFMQAV-TATGRLSSNQPNLQNIP------- 682 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R + L+ AD + IE R++A ++ E Sbjct: 683 -----------------IRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETH 725 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G+DI+ +T AK F P++ V+KEQR+ K + + Sbjct: 726 MIEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGII----------------- 768 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + L + + + + + + Sbjct: 769 ---------------------------YGVSAIGLSQQTSLSRSQSKELIDTYYQTYPKL 801 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + RR D+ Sbjct: 802 KTYIEQQIFFAREHGYVQTLL--------------------------GRRRYLPDIHSRN 835 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 + A + +Q + DI+ M K ++L VHDE Sbjct: 836 QVVRGAAERN---------AVNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDE 886 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + P V L M +A +PL E + Sbjct: 887 LLFDVPKRELEVVTPLIREEMGHA--YALSVPLIVEIGTGNNW 927 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 188/701 (26%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D+ET S L A I A+A A+ Sbjct: 352 FAFDLETDSLDTL----------SANIVGIAFAVAPGKAAYLPVAHDYLDAPPQLDRAAV 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D V N ++R + K I++ ++ T + + + Sbjct: 402 LKQLKPLLEDSKAAKVGQNLKYDRGVLKNY-DIELNGIKF-DTMLESYCLNSVGGKHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + LN + GK + A + Y D + Sbjct: 460 SLAARWLNHKTVTFEEIAGKGKYQL---------------TFNQIALEQAAHYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P + E L + + G ID +++ K + + Sbjct: 505 TLQLHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ +L + T L+ LF I + T + +L+ + Sbjct: 565 ELEQKAHELAGEPF-NLSSTKQLQTILFEKQEIKPTKKTPGGAPSTSEKVLAELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L + ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEHRGLSKLKSTYTDKLPQMINPITGRVHTSYHQAV-TATGRLSSNDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA K++V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA GEDI+ T ++ F + KVS EQR K + L Y Sbjct: 719 QDKGLLDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ FE + + + Q + + L G L Sbjct: 774 SRQLNIGAGEAKKYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + Sbjct: 826 -PDINSSNAIRRKAAERAAINAPMQGTA-------------------------------- 852 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + G L +N D + M +V +H Sbjct: 853 --------ADIIKRAMIAVDGWLLQQN------SDEVKMIM-QVHDE---LVFEIH---- 890 Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + LM + +PL+ E + Sbjct: 891 ----KDAVAGASQTIRELMENSMK--LDVPLQVEVGTGDNW 925 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 183/701 (26%), Gaps = 149/701 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 352 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK A + EY +D + Sbjct: 460 ELSERWLGLETITYESLCGKGAKQIG---------------FADVAIEQATEYAAQDADF 504 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 505 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 565 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 624 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 681 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + L Y G Sbjct: 719 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 774 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ P L Sbjct: 826 -PDIHNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS--- 881 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 M +VL Sbjct: 882 -------------------------------------KLIM-QVHDE---LVL------- 893 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T V L +M K +PL AE + + Sbjct: 894 -EVVETELDFVKEKLPQIMAKVGGGLLDVPLVAEVGVGENW 933 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 108/703 (15%), Positives = 189/703 (26%), Gaps = 139/703 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSAMPS--- 55 ++ +D ET S PL A + + +E + + QS Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEEINDLFYIPLSHQSQKKEMNQ 429 Query: 56 --------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-- 105 +L ++ N F+R +F G+++ + T + Sbjct: 430 LAIEDVFFNLRSWIESPEKEKTLQNCKFDRQIFYNH-GLNLRGVTF-DTLLADYILNNQE 487 Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L F K GK K D + F Sbjct: 488 KHGLSEISFREFGFKPPTFKETVGKN------KDFSFVDINDASTYCGYDVLLTFKIAKI 541 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 E + E L + + G RID + +L + + ++E++ Sbjct: 542 FKERFNNENKDLTKLFKEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENV 601 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLIL 279 ++ + L LF +D T +L ++ Sbjct: 602 FEIAKQEF-NLSSPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPFLI 660 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 S ++ L +S GR+ A+ TGR S QN+P Sbjct: 661 KHRTLSKLLSTYIDALPNLISEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP------- 712 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 S +R + G KL+ AD + IE R+LA +A E+ Sbjct: 713 -----------------VRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEIL 755 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I AF +DI+ T F + ++ ++R +GK + + Y G K A G+ Sbjct: 756 INAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFGVIYGMG---IKKFARSTGVS 810 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E + + + + + + G E Sbjct: 811 TT--EAKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKFDK--------- 859 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 L K I L ++R+ Sbjct: 860 ----------------------------NGLGRLIGKDPYEIDLQTARKA---------- 881 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEI 632 +Q +R +Q S DI+ M K ++L VHDE+ Sbjct: 882 ---GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDEL 932 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 + E L M +PL + + Sbjct: 933 LFEVQPDFLEITKDLVKETMEDCVK--LNVPLLVDIGVGNNWM 973 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 108/712 (15%), Positives = 192/712 (26%), Gaps = 175/712 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 D ET S P E + +++ +++ + + Sbjct: 358 FAFDTETTSLHP----------EDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQLAKDDV 407 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 + L D + + HN F+ ++ G+ + T ++A S L N Sbjct: 408 FAKLAPVFADPKIKKIGHNVKFDLLVL-YFAGLSAVKGVYADTMLMAHLLDSVQSCALDN 466 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L++ G + + Y D E Sbjct: 467 LAEKYLSYKTIKYSDVAGSGSKS---------------VTFDNVPVDIACAYSGEDSEVA 511 Query: 171 RELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 LF L+P E + + G + D + + E++ E + Sbjct: 512 LRLFNVLLPKIKDEGKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQA 571 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---------SEGTLKSILSHSNI 270 + +DI + L LF I T + +L+ Sbjct: 572 VQKDIYAAAGQEF-NIASPKQLGNVLFESLAIPYPKKVKVDKNGNKQYSTAEDVLTEIAP 630 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L+L + S L +S GR+ + G + TGR S QN Sbjct: 631 MYDIANLVLRFRSVSKLIGTYTEKLPLLISKRTGRIHTSFNQAG-TTTGRLSSSDPNLQN 689 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R IA G LV AD + IE R++ Sbjct: 690 IP------------------------ARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLI 725 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A IA + IKAF G DI+ T A+ I++V+ E+R+ K L Sbjct: 726 AHIAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLM--------- 776 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G+ S L A + Sbjct: 777 -----YGMGAHGLSAQ------------------------------TGLSFKAAKAYIDC 801 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + ++ + + + + RR+ Sbjct: 802 YFTRYPKIRDYMDSIKKFAHEHGYVETIL--------------------------GRRID 835 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGY 622 + + A + R +Q + DI+ M K + Sbjct: 836 FPGINSTN---RIAVTGAERAAINAP------MQGSAADIIKIAMIAIEKWITSLPADTV 886 Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + + LM + +PL A + + Sbjct: 887 RMILQVHDELVFEVKNEFLDEATAKIKELMENAVT--LDVPLLAGIGIGQNW 936 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 190/694 (27%), Gaps = 151/694 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----PSDLLQ 59 D ET S L A I + E + L Sbjct: 356 FSFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRP 405 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 D + V N ++ + + GI++ + T + L ++ L Sbjct: 406 LFADTAIGKVGQNMKYDIQVLSRY-GIEVRG-QLFDTMIAHYLLFPDLRHNMDEMAETLL 463 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + G + Q +Y D + T +L++R Sbjct: 464 GYRTIHYSDLVGSDKQEVHIR---------------QVPLQNLADYAMEDADITWQLYER 508 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + + G ++D +++ + + +E ++++++I + Sbjct: 509 LNAMLSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYR 568 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 L G + + LF I + ++ T + IL LIL+ Sbjct: 569 LA-GHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDY 627 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L E DG+L + A+ TGR S QN+P Sbjct: 628 RGIKKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP---------- 676 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ + + + AD + IE R++A ++ ++ I+ Sbjct: 677 --------------IRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQ 722 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GEDI+ T +K + P+ +V+ + R K + Y L++ Sbjct: 723 AFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYG-----ISAFGLSERLNIS 777 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + F + +++ + L G L + + Sbjct: 778 RTEAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFL---------RDINSA 828 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + +L + + + Sbjct: 829 NAVVRGYAERNAINAPIQGSAADLI---------------------KLAMIRIHEEITER 867 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 K ++L VHDE+ Sbjct: 868 --------------------------------------KLRSRMILQVHDELNFNVLRPE 889 Query: 641 YFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V L M + +PL AE E + Sbjct: 890 AAEVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 103/694 (14%), Positives = 182/694 (26%), Gaps = 158/694 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 + +D ET S PL A + + +D + Sbjct: 315 VAVDTETDSLDPLK----------ARLVGVSLCTEDGEAWYLPCGHRDEAGELVAGQLPL 364 Query: 53 --MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGL---P 106 + L L + HN F+ + I T + A Sbjct: 365 DRLIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTMIGAWLLAPDRRT 424 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + C +N + A + Y D Sbjct: 425 YKLDDLCGEINLRMTSYEEVTHAD---------------KSEDAFCRVPLEAAKNYSCED 469 Query: 167 VEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 V L++ +P + E L + + G R+D D + +L + Sbjct: 470 VYGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRR 529 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 + + I + G+ + L LF + ++ T +L + + Sbjct: 530 LRTDELSIYQAA-GMSFNINSPKQLGEVLFEKLQLPKGRKTKTGWSTDVKVLENLSFDHE 588 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL + ++ L+ + GR+ + G + TGR S QN+P Sbjct: 589 LPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCG-TATGRLSSSSPNLQNIP- 646 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +RS IA++G L+ AD + I+ RVLA Sbjct: 647 -----------------------IRTEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHY 683 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I AF G+DI+ T A+ FN + V+ E R + K + + Y + Sbjct: 684 SQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMS-----SFG 738 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + + F + + Q + L+G L Sbjct: 739 LSSQLHVSRKDAQLFIDRYFAHFSGIKDFMASTIQQAKKDGFVTTLLGRRRPLA------ 792 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + E +L Sbjct: 793 ---EINSANRVQREFAERTAINTPIQGTAADII---------------------KLAMLR 828 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + M L +HDE+ Sbjct: 829 IHRELLRRDFRAR----------------------------ML----------LQIHDEL 850 Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 V E P+T V L M +PL Sbjct: 851 VLEVPETELDPVSRLLKDSMESAMP--LRVPLVV 882 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 193/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET L A + ++A + + Sbjct: 356 FAFDTETDGLDTLT----------ANLIGLSFAIEPGVAAYLPVAHDYLDAPVQLDRAYV 405 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N F++ L + ID+ + T + + + Sbjct: 406 LETLKPLLEDEKALKVGQNLKFDKSLLARY-DIDLRGIAY-DTMLESYVLDSVSGRHDMD 463 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ + GK + A + Y D + Sbjct: 464 SLSDRYLDHKTITFEEIAGKGKNQL---------------TFNQIALEQAAPYAAEDADV 508 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + P + E L + I G ID ++ + +++ Sbjct: 509 TLQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLIDQHILAAHSKELSKRLG 568 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L+ +L + + T L+ L+ + ++ + T + +L+ + Sbjct: 569 ELEIQAHELAEEPF-NLASTKQLQAILYEKQKLPVLKKTPGGAPSTNEEVLAELALDYPL 627 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 628 PKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAV-TATGRLSSSDPNLQNIP-- 684 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G ++V AD + IE R++A ++ Sbjct: 685 ----------------------VRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLS 722 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T + F P+DKV+ EQR K + L Y Sbjct: 723 QDRGLLNAFAAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMS-----AFGL 777 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + FE + + + Q E L G L Sbjct: 778 ARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQASEQGYVSTLDGRRLYL-------- 829 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 V + + R ++ P Sbjct: 830 -PDVRSSNGMRRKAAERAAINAPMQGTAADI-IKRAMIAVDAWLQGQQQP---------- 877 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 L I+Q +V VH Sbjct: 878 -----------------------LVRMIMQ-------------VHDE---LVFEVH---- 894 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + SLM + A +PLK + K + Sbjct: 895 ----ESAMDDACLRIRSLMEGSMELA--VPLKVDIGVGKNW 929 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 104/701 (14%), Positives = 193/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 + ID ET S + +A + ++A + + Sbjct: 341 IAIDTETTSLNYM----------EAELVGLSFATEAGKAAYLPLAHDYLDAPLQIDKASA 390 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L +T V N ++ + GI + R+ T + + + Sbjct: 391 LEKLRPILEGDTPQKVGQNLKYDMSILANA-GISLKGIRF-DTMLESYVFNSIASRHDMD 448 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + G Y D + Sbjct: 449 GLALKYLGHKNISFEEVAGKGAKQL---------------TFNQVHLDIAGPYAAEDADI 493 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + L P + E L + + +G ID L+ + +A++ Sbjct: 494 TLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLD 553 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 L+ ++ + + L+ F G + + T + +L + Sbjct: 554 DLENKAYEIAEEKF-NLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAEDVLIELALDYPL 612 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L V+ + GR+ + A TGR S QN+P Sbjct: 613 PKVILEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANA-ATGRLSSSEPNLQNIP-- 669 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A ++ Sbjct: 670 ----------------------IRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 707 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F ++V+ EQR K + L Y Sbjct: 708 QDAGLLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMS-----AFGL 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + + F + + + E L G L Sbjct: 763 AKQLDIPRNEAQKYIDTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYL-------- 814 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + ++ Sbjct: 815 -PEINDRNAMRRQAAERAAINAPMQGTAADIIKKAMI----------------------- 850 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 A Q + + T G I+Q +V V DE Sbjct: 851 ---------AIHQWINQDTQGEITL--IMQ-------------VHDE---LVFEV-DE-- 880 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ +C LM + S + L AE + Sbjct: 881 -----AQAETLKTKVCDLMAQAAS--LDVTLLAEAGIGDNW 914 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 185/709 (26%), Gaps = 162/709 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + D ET + A + + A Sbjct: 385 IVAFDTETDALSSAT----------AGLCGVSLAISPGEACYIPVGHCEKDGLALEAAAD 434 Query: 50 -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + + L L D V+ +A N+ ++ + + I T +++ Sbjct: 435 LVQVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY---GINVGPIEDTMLISYVLE 491 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L K G K I+ G ++ Y A+ Sbjct: 492 AGLHGHGMDELSELWLGHKPISFKQVAGSGKGQISFKHVGLAEATAYAAEDADV-----T 546 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 Y RE + ER L + + + G R+D D + +L + Sbjct: 547 LRLYNVLKPRLAREGLLTVYETL--ERPLPAVLAAMENDGIRVDPDTLRRLSNEFSMRMA 604 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L + + LF L G T +L + Sbjct: 605 DFEARAQELVGRPF-NLGSPKQIGDVLFGEMALKGGKKTATGQWSTDSDVLEALALEHEL 663 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQ 333 ++L+ S L A++ G R + A+ TGR S QN+P Sbjct: 664 PRVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGRLSSSDPNLQNIP-- 721 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A+ GK L+ AD + IE R+LA I Sbjct: 722 ----------------------IRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIG 759 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 KAF G DI+ T ++ FN PI+ + E R K + Sbjct: 760 DIPQLKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINF--------------GI 805 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ A + + K + + Sbjct: 806 VYGIS------------------------------AFGLANQLSIPQGEAGAYIKTYFER 835 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 G+ + R++ D+ Sbjct: 836 FPGIQAYMEATKAFVREHGYVTTIF--------------------------GRKINIPDI 869 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG--YDIVLT 627 G R +Q + D++ M G ++L Sbjct: 870 GGKSVAHRQFA---ERAAINAP------IQGAAADVMRRAMVRMPGALKAAGLSSRMLLQ 920 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLM--TKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ + + +M P+ +PL E A + Sbjct: 921 VHDELVFEAPEAEAQATIDVAREVMQGAAAPAVTISVPLTVEARAAANW 969 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 109/693 (15%), Positives = 189/693 (27%), Gaps = 139/693 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + + ID ET S A A + + A+ Sbjct: 352 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 401 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSL 109 + L +L + + + N +++ +F GI + + + L L Sbjct: 402 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 459 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + + A +L + E Sbjct: 460 DELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDE 519 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+++++ E + + + G +ID + + + E KL++ Sbjct: 520 KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAA 573 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRL 282 D + L+ LF GI ++ T +++L +IL Sbjct: 574 DQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNR 632 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 633 SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP---------- 681 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR A G +V AD + IE R++A ++G+ I A Sbjct: 682 --------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 727 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 728 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDN 782 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 S F + + ++Q + L G L + Sbjct: 783 LSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKN 833 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + G ++ R+ I Sbjct: 834 ANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI--------------------- 872 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 M +VL E +T Sbjct: 873 ----------------------GS-----KLVM-QVHDE---LVL--------EVVETEL 893 Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 894 DFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 114/711 (16%), Positives = 204/711 (28%), Gaps = 174/711 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52 + D ET S +P A + W E + Sbjct: 382 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 431 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + L L E N+ F+R++ ++ GI + T + + +L Sbjct: 432 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGV-VFDTMLASYIINPESSHNLT 489 Query: 111 NACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L L K + YC D Sbjct: 490 DLSLRYLPDLGIVAQSYSQLVPKG------------------KTIADLDINTVANYCGLD 531 Query: 167 VEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 V T ++ +++ + E+ L + + +G RID D + +L + + + Sbjct: 532 VFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGE 591 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270 L++ + G + + L LF +D T ++L Sbjct: 592 TLDNLEKTSHQAA-GEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKH 650 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + IL S ++ L E V SD GR+ + TGR S QN Sbjct: 651 DHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQA-ITSTGRLSSSHPNLQN 709 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P S +R I +G LV AD + IE R+L Sbjct: 710 IP------------------------IRTEFSRQIRKAFIPESGWLLVSADYSQIELRIL 745 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ E I+A+ +D++ T F D ++ E+R + Sbjct: 746 AHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRL--------------GKII 789 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G+ FA + + TA + Sbjct: 790 NFGVIYGMG------------------------------AQRFAREVGVSATAGKQFIDR 819 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + +++ GV + + + RR Sbjct: 820 FNSQYPGVFEYLESQKLAAINQGYVETIL--------------------------GRRRY 853 Query: 570 YSDVKG-DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624 + +KG D LN Q++R +Q S DI+ M + + Sbjct: 854 FEGLKGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARL 907 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 +L VHDE+V E P + + + + S M +PL + + + Sbjct: 908 LLQVHDELVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 956 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 104/699 (14%), Positives = 192/699 (27%), Gaps = 152/699 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 L ID ET S QP A I ++ + D + Sbjct: 383 LVIDTETTSVQP----------RWAEIVGYSFCYRDGEAWYLPIRAPENEQALCLDATAV 432 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L D + V N ++ ++ ++ GI++ + T V +L Sbjct: 433 ADLFRPVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAAF-DTMVADYLIDPGERSHNLD 490 Query: 111 NACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRD 166 L + GK I Y A + + ++D Sbjct: 491 ELARRHLGHQNIEIESLIGTGKKQIRMDQVPLAAITDYAAEDALVPYRLLPILEPRLEQD 550 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 D E L + + RG ++D +++L + + L+ +I Sbjct: 551 GLVPL--------FRDLEMPLVEVLAELEHRGIKVDRARLVELSTDFSTKITALENEIYA 602 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---LKSILSHSNITQLAKDLILNRLA 283 + G + L LF + ++ ++ +L +L Sbjct: 603 INHGEF-NIDSRLQLAKLLFEDLKLPILKKTKTGPSMDAEVLEDLARLHELPKKVLEYRH 661 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + +++L E + GR+ +L+ A TGR S QN+P Sbjct: 662 LAKLRSTYVDSLQELIHPVTGRVHTSLKQDVA-ATGRLSSQDPNLQNIP----------- 709 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +RS G KL+ AD + IE RVLA +G+ +A Sbjct: 710 -------------VRTAEGRAIRSAFQPGIEGWKLMAADYSQIELRVLAHFSGDAALAEA 756 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 FA+ DI+ ++ + V+ E R Sbjct: 757 FASDRDIHTQVASQVYEVAPGDVTPEMRRSA----------------------------- 787 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 +A + + A + A+ A++ GV Sbjct: 788 ---------------KAINFGVIYGQSPFGLARSLGIENDEAAAFISAYFAQYPGVDDFM 832 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 ++ G RR R + + R+ Sbjct: 833 RETLIGCRKQGYVTTIAGRRRPVTGVRDPHAVNDK---------RQRTLP---------- 873 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 R ++Q + DI+ M + ++L +HDE++ E Sbjct: 874 ------ERIAI------NTVIQGSAADIIKRAMITVHRRLKEEKLQARMLLQIHDELLFE 921 Query: 636 TPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 P + L M+ +PLK + + Sbjct: 922 FPPEEQGQLRDLVVESMSTAEK--ISVPLKIDVKTGLNW 958 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 92/698 (13%), Positives = 187/698 (26%), Gaps = 152/698 (21%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSD 56 + D ET S ++A + A+A++ + D E + + Sbjct: 373 LKTFCFDTETTSLD----------TKEARLIGLAFAFEKQKGFYVAVPADPEEAREILQE 422 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114 +E + V HN ++ + K G+ + K T + + Sbjct: 423 FRAVFENEQIQKVGHNLKYDLAVLKWH-GVGVHGK-LFDTMLAHSLIEPEMRHGMDYMSE 480 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L +S G + EY D + T +L Sbjct: 481 VYLGYSPISITKLIGDEKSKQL--------------NMADVPVAKVAEYAAEDADVTWQL 526 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +++L PL + E L + + G ++D + + +++E ++ Sbjct: 527 WEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLSKEMANHEQT 586 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLI 278 I +L + L LF I T + L + Sbjct: 587 IYRLAGQEF-NLNSPRQLGEILFDKLKISENAKKTKTGQYATNEQTLMDLAADHEIVQRL 645 Query: 279 LNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ ++ + L + GR+ T + TGR + QN+P Sbjct: 646 LDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQAV-TTTGRLNSQNPNLQNIP------ 698 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 +R + L+ AD + IE R++A ++ E Sbjct: 699 ------------------IRTEQGKEIRKAFVPRNEDYVLLSADYSQIELRIIAALSHEQ 740 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++ F DI+ T A+ + P+D+V+ E R K++ + Y Sbjct: 741 GMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYG-----ISAFGLAQR 795 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L + + F + + D + + + G R + Sbjct: 796 LRIPRKEAATIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGR---------RRYMRD 846 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + G ++ ++ G+ Sbjct: 847 IRSANAAVRGGAERNAINAPIQGTAADMI---------------------KIAMINIHGE 885 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 + ++L VHDE+V + Sbjct: 886 LTKRK--------------------------------------LKSRMLLQVHDELVFDV 907 Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 T V + M +P++ E K + Sbjct: 908 HQTEENEVRQIVEEKMRTAIQ--LEVPIEVEIGSGKTW 943 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 109/693 (15%), Positives = 189/693 (27%), Gaps = 139/693 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + + ID ET S A A + + A+ Sbjct: 330 NTIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQ 379 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSL 109 + L +L + + + N +++ +F GI + + + L L Sbjct: 380 DVLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGL 437 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + + A +L + E Sbjct: 438 DELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDE 497 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+++++ E + + + G +ID + + + E KL++ Sbjct: 498 KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAA 551 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRL 282 D + L+ LF GI ++ T +++L +IL Sbjct: 552 DQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNR 610 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 611 SLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP---------- 659 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR A G +V AD + IE R++A ++G+ I A Sbjct: 660 --------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 705 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 706 FQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDN 760 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 S F + + ++Q + L G L + Sbjct: 761 LSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKN 811 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + G ++ R+ I Sbjct: 812 ANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI--------------------- 850 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 M +VL E +T Sbjct: 851 ----------------------GS-----KLVM-QVHDE---LVL--------EVVETEL 871 Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 872 DFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 904 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 183/701 (26%), Gaps = 149/701 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ LF GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ P L Sbjct: 827 -PDIRNKNTNARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS--- 882 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 M +VL Sbjct: 883 -------------------------------------KLIM-QVHDE---LVL------- 894 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T V L +M K +PL AE + + Sbjct: 895 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 190/694 (27%), Gaps = 149/694 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 L +D ET S + +A + +A ++ DR + + Sbjct: 349 ILSLDTETTSTDAI----------EAELVGLCFAVEEHKAFYVAIPNDRKQALQYVNIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 D +++ + N ++ + K G+ + K + T + L ++ Sbjct: 399 SVYEDPSILKIGQNIKYDYEVLKNY-GVTLQGKMF-DTMLAHYVLQPELRHNMDYMAETL 456 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN+ + G P ++ A + EY D + T +L Sbjct: 457 LNYKTIHIEELIG--------------APGKHQKSMRDIAPEDAYEYGAEDADITLQLRN 502 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E L + + G R+D + E+ + +L+ I Sbjct: 503 VLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLERHIY 562 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G + + LF I + ++ T + +L + IL Sbjct: 563 EEA-GETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVEDILA 621 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + + + T + TGR S QN+P Sbjct: 622 HRGLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATGRLSSSDPNLQNIP--------- 672 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R C + G AD + IE R++A ++G++ I+ Sbjct: 673 ---------------VRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIE 717 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF G DI+ T AK ++ I V+ E+R K + Y T + + Sbjct: 718 AFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYG-----ITTYGLAQRMGID 772 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + F + + +++ +++ + L G R + Sbjct: 773 NKEARMLIEDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGR---------RRYLPDINSK 823 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + Sbjct: 824 NGTVRGFAERNA----------------------------------------INAPIQGS 843 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 ++ R + ENI ++L VHDE+ Sbjct: 844 EADIIKIAMIRIWQRFKAENI-------------------RSKMILQVHDELNFSVYPEE 884 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ + Sbjct: 885 KERVEKIVLEEMQGACQ--LKVPLTADAGWGNNW 916 >gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] Length = 949 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 91/686 (13%), Positives = 183/686 (26%), Gaps = 131/686 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + + Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + D P D A + E Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKEND 541 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +RL D E L + I G +D + + + + ++++++I +L G Sbjct: 542 AERLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA-GETF 598 Query: 234 SSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF I + ++ T + +L + IL Sbjct: 599 NIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLL 658 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ GR+ + + TGR S QN+P Sbjct: 659 GTYIDALPLLINPRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 701 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I G AD + IE R++A ++ + I AF + D Sbjct: 702 --------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHD 753 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + + V + R K + Y +++ + Sbjct: 754 IHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV-----FGLAERMNVDRKEAKEL 808 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + +++ E + + L + + Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFL---------PDINSRNAVVRGY 859 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + ++ Sbjct: 860 AERNA----------------------------------------INAPIQGSAADIIKV 879 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R Y E +QA ++L VHDE+ P V + Sbjct: 880 AMARIYQRFQAEG-IQA------------------KMILQVHDELNFSVPVNEKERVEEI 920 Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ +PLKA+ K + Sbjct: 921 VIE-EMEKAYRMHVPLKADCGWGKNW 945 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 107/692 (15%), Positives = 186/692 (26%), Gaps = 131/692 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNI 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNKNT 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ P L Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 882 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E +T Sbjct: 883 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 902 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 903 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 185/701 (26%), Gaps = 157/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 352 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQIDLQD 401 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 460 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 504 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 505 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKL 564 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + + L+ LF GI ++ T +++L Sbjct: 565 EQEAYAVAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 624 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 681 ----------------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + L Y G Sbjct: 719 GDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 774 AKSLGIDNISAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G ++ R+ I Sbjct: 826 -PDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI------------- 871 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 M +VL Sbjct: 872 ------------------------------GS-----KLVM-QVHDE---LVL------- 885 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E +T V L +M K +PL AE + + Sbjct: 886 -EVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 925 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 198/696 (28%), Gaps = 149/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 ID+ET S P + I + ++ + + + Sbjct: 320 FAIDLETSSLDPF----------ECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEVLKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L + L D V N F+ + GI+ P T + A +L + Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVLM-VKGIE-PVPPHFDTMIAAYLIEPNEKKFNLDDLA 427 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L + + + F +D P + A + Y ++ Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFVDVPLEKAANYSCEDADITYRLYKTLSLKLHEA 486 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 487 DLENVFYKI---EMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRIAGEP 543 Query: 232 IRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF GI T +L LIL Sbjct: 544 F-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYRKIQK 602 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + V+ GR+ + G + TGR S QNLP Sbjct: 603 LKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP-------------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ +V AD + IE R+LA ++G++ ++AF Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEE 697 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ FN ++V++E R A + G+ S Sbjct: 698 GIDVHTLTASRIFNVKPEEVTEEMRR--------------AGKMVNFSIIYGVTPYGLS- 742 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 V+ + E + + + V + + Sbjct: 743 -----------------------------VRLGVPVKEAEKMIVNYFVLYPKVRDYIQRV 773 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 R+ + Sbjct: 774 VSEAKEKGYVRTLF--------------------------GRKRDIPQLMARD---RNTQ 804 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 ++ R +Q + DI+ M K +++ VHDE+V E P+ Sbjct: 805 AEGERIAI------NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPN 858 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + MT +PL+ + K + Sbjct: 859 EEKDALVELVKDRMTNVVK--LSVPLEVDVTIGKTW 892 >gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14] gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14] Length = 949 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 87/702 (12%), Positives = 182/702 (25%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 L +D ET +P+ A + +++ + + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G+ + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKG-ALFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR---------------YACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278 I +L G + + LF T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TSTGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K G+ Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGI 789 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + V Sbjct: 790 SVFGLAER------------------------------MNVDRKEAKELIDGYFETYPSV 819 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + R+ D+ Sbjct: 820 KAYMEKSIQIAQEKGYVETIFH--------------------------RKRFLPDINSRN 853 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 854 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDE 904 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + P V + ++ +PLKA+ K + Sbjct: 905 LNFSVPVNEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 109/692 (15%), Positives = 188/692 (27%), Gaps = 139/692 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL++ D Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAD 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ R+ I Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSDGI---------------------- 872 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E +T Sbjct: 873 ---------------------GS-----KLVM-QVHDE---LVL--------EVVETELD 894 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6] gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6] Length = 949 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 87/702 (12%), Positives = 182/702 (25%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 L +D ET +P+ A + +++ + + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G+ + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKG-ALFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR---------------YACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278 I +L G + + LF T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TSTGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K G+ Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGI 789 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + V Sbjct: 790 SVFGLAER------------------------------MNVDRKEAKELIDGYFETYPSV 819 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + R+ D+ Sbjct: 820 KAYMEKSIQIAQEKGYVETIFH--------------------------RKRFLPDINSRN 853 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 854 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDE 904 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + P V + ++ +PLKA+ K + Sbjct: 905 LNFSVPVNEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 362 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 110/717 (15%), Positives = 199/717 (27%), Gaps = 185/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 ++ +D ET + A QA + + + + Sbjct: 340 QVAVDTETDNLD----------ATQARLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389 Query: 53 ----MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 + L L D +++ + N ++ I+ + GI + + T +L+ Sbjct: 390 DLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQP--FDDTMLLSYDLDAGRH 446 Query: 107 -SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + L + K GK+ I + Y Sbjct: 447 GHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAAT-----------------RY 489 Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T L+ L P + +R L + + G +D + L Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSH 267 A + +L+E+I + G L LF G+ S+ + + Sbjct: 550 FAHDISRLEEEIY-VLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERL 608 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 + ++ IL S + L V+ GR+ + GA +TGR S Sbjct: 609 AAEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPN 667 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G L+ AD + IE Sbjct: 668 LQNIP------------------------IRTEIGREIRNAFIAKKGHLLLSADYSQIEL 703 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+ A +A E ++AF EDI+ T + F V +E RA K + A+ Y Sbjct: 704 RLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARAKTINFAILYG---- 755 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L++ +FS + + Sbjct: 756 -ISAWGLAARLEIDRFS---------------------------------------AQEM 775 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + + + P R Sbjct: 776 IDRYFERFPAIRHYIDRTLDFVRLHGY--------------------------VETPFGR 809 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGY 622 + +K A R+ +Q +S DI+ M K G Sbjct: 810 KTHLPAIKSRKVTERQAA---ERQAINAP------IQGMSADIIKRAMVRMEPALAKAGL 860 Query: 623 ---DIVLTVHDEIVSETPDTPYFSVGTLCSL--MTKN-PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + M P + L+ E + Sbjct: 861 SSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSW 917 >gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] Length = 949 Score = 362 bits (930), Expect = 9e-98, Method: Composition-based stats. Identities = 87/702 (12%), Positives = 182/702 (25%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 L +D ET +P+ A + +++ + + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G+ + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKG-ALFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + Y Y D + T +L Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR---------------YACEDADVTLKL 529 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + I G +D + + + + ++++++ Sbjct: 530 KNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQE 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLI 278 I +L G + + LF T + +L + I Sbjct: 590 IYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKI 648 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + + TGR S QN+P Sbjct: 649 LEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV-TSTGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I G AD + IE R++A ++ + Sbjct: 702 ------------------IRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I AF + DI+ T AK + + V + R K G+ Sbjct: 744 MIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANF--------------GIIYGI 789 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ + + + + + V Sbjct: 790 SVFGLAER------------------------------MNVDRKEAKELIDGYFETYPSV 819 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + R+ D+ Sbjct: 820 KAYMEKSIQIAQEKGYVETIFH--------------------------RKRFLPDINSRN 853 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + R +Q + DI+ M + ++L VHDE Sbjct: 854 AVVRGYA---ERNAINAP------IQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDE 904 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + P V + ++ +PLKA+ K + Sbjct: 905 LNFSVPVNEKERVEEIVIE-EMEHAYRMHVPLKADCGWGKNW 945 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 107/726 (14%), Positives = 189/726 (26%), Gaps = 191/726 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49 + +D ET + + A + + A Sbjct: 356 RIIAVDTETSALDAMR----------ADLVGISLATGANEACYIPLGHLNDGGGGSDMFS 405 Query: 50 --QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +P + L L + V+ + N ++ + + I T +L+ Sbjct: 406 EKPEQVPLDDAVAALKPLLESDAVLKIGQNIKYDLNVLARY---GIAVAPIDDTMILSFD 462 Query: 103 NGLP--------SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + L + K G Sbjct: 463 LDAGRSEGGVGGHGMDELSERHLGHTPLSFKEVCGTGRKQ---------------IPFGE 507 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDL 203 EY D + T L + L P E L + + G ++D Sbjct: 508 VPLDKATEYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDR 567 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEG 259 + KL E A E KL++ I +L L LF G Sbjct: 568 ARLAKLSEEFATETAKLEKTIHELAGKEFT-VGSPKQLGEVLFDDLGHKGGKKGKSGQYS 626 Query: 260 TLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRT 317 T +S+L + D +L + + L +A++ D GR+ + GA +T Sbjct: 627 TDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSLVGA-QT 685 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R + NG L+ Sbjct: 686 GRLSSTDPNLQNIP------------------------IRTPIGRQIREAFVPENGNVLL 721 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+ A +A +AFA GEDI+ T + + + ++ RA K + Sbjct: 722 AADYSQIELRLAAHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINF 777 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 A+ Y L ++ Sbjct: 778 AILYG-----ISRWGLAGRLKIEP------------------------------------ 796 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + G+ + E Sbjct: 797 ---DEAQELIDTYFKRFPGIQSYIHETLETVRERGYSETLF------------------- 834 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN- 616 R+ + + + R +Q S DI+ M Sbjct: 835 -------GRKTWFPRIGSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARM 878 Query: 617 ---ATKNGY---DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEG 667 G ++L VHDE+V E P+ + + +M + P+ +PL E Sbjct: 879 MPALEDAGLEHVRMLLQVHDELVFELPEGDVEAASPIIERVMAEAALPAVELSVPLGIEI 938 Query: 668 YEAKRY 673 + Sbjct: 939 GTGASW 944 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 194/706 (27%), Gaps = 169/706 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A I +++ + + Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVL 413 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112 + L +L D + + +++ +F GI + T + + P +L + Sbjct: 414 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + S + GK + Y D + T Sbjct: 472 ALRHVSRSGISYEDLCGKGKNQ---------------IPFAQVSVDKAAAYSCEDSDQTL 516 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ L P + E I G ID + + + KL+ Sbjct: 517 DVHNTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLE 576 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 E+ ++ + L F G+ +V + T + +L Sbjct: 577 EEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 635 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + S + L++ DGR+ A TGR S QN+P Sbjct: 636 LLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 689 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A GK + AD + IE R++A ++G++ Sbjct: 690 -------------------VRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDE 730 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF NG D++ T A+ F +D+VS EQ Sbjct: 731 ALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQ---------------------------- 762 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + L A + A + ++ G Sbjct: 763 ----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYPG 806 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + E RRLV ++ G Sbjct: 807 VKRYMDQTVELAHAQGYVETVF--------------------------GRRLVLPEINGG 840 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 R +Q + D++ + M +++ VHD Sbjct: 841 N---GPRKKAAERAAINAP------MQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHD 891 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V E P++ V + ++M +PL AE + K Sbjct: 892 ELVFELPESARDWVQAEIPAIMAGVAD--LSVPLLAEIGFGSSWEK 935 >gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia stuttgartiensis] Length = 887 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 96/705 (13%), Positives = 197/705 (27%), Gaps = 168/705 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPS 55 ID+ET PL A I +++W+ + + Sbjct: 315 FAIDLETTGTDPLK----------AHIVGLSFSWEQKEAYYVPLMAPENTRHLTADIVLP 364 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 ++ + L DE+ + N ++ ++ KK I + + + + + +L + Sbjct: 365 EIRKVLEDESKKKIGQNIKYDLLVLKKH-NIGLKGI-YFDSMIASYLLNPAKRNHNLDDI 422 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L++ + G +Y +D + T Sbjct: 423 AFEYLSYKTIMIAELIGSGKQQ---------------ITMDKVPVDKVCQYACQDADITF 467 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + + PL + E L + + G I+ D + ++ +A + + L+ Sbjct: 468 RLAETMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLE 527 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLI 278 ++I ++ + + L LF + T ++L+ L Sbjct: 528 KEIYRVAEQEF-NISSHKQLGAILFDKFQLPKLRRTKTGVSTDANVLASLAWRHPLPKLA 586 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + + L ++ D G++ T + TGR S QN+P Sbjct: 587 LEYRQLAKLKSTYADALPNLLNQDTGKIHTTFNQTV-TSTGRLSSSNPNLQNIP------ 639 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 +R I S + AD + IE R+LA + + Sbjct: 640 ------------------VKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDT 681 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF DI+ + ++ P++ V+ E R K + + G Sbjct: 682 ALMEAFREDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGII--------------YG 727 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L+ S L + A+ +QG Sbjct: 728 LNEYGLS------------------------------RDTGLSLNDAKDFIDAYFTLYQG 757 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + + E + + R+ D+ Sbjct: 758 VREFRDKVVEEAKEMGYVKTLFN--------------------------RKRAIPDINAK 791 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 R I+Q + D++ M N ++L +HD Sbjct: 792 NKRFRNLA---ERIAI------NTIIQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHD 842 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 E++ E + M + +P+K K + Sbjct: 843 ELLFEVGVQALEQTRIMVQEEMGHAVT--LRVPVKVNIKTGKNWM 885 >gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4] gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4] Length = 956 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 96/715 (13%), Positives = 185/715 (25%), Gaps = 167/715 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 ID ET S Y QA + ++A T Sbjct: 361 HFVIDTETTSV----------YWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLD 410 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWI-CTSVLARTN 103 + + L L + ++ + + ++ + I W T + + Sbjct: 411 RDTVLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVI 470 Query: 104 GL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 + + L + GK D + +QLF Sbjct: 471 NAAVTRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLF 530 Query: 160 GEYCKRDVEAT--RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + ++ + T +L L E + + G I + +L + +E Sbjct: 531 ELFSQKLADDTNNAKLLHAL------EIPTAEILCQMEAHGILIKRPFLNELSKRFDEEI 584 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 L++ ++ + L LF G+ ++ T +++LS + Sbjct: 585 IALEKRAYEVAGEEF-NLGSPKQLGEMLFDKLGVAGGKKTKTGQYSTGEAVLSKIDHP-- 641 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 D+ L S + L R+ + + TGR S QN+P Sbjct: 642 LVDITLEYRGLSKLKSTYTDALDNVADSETDRVHTSYHQA-LTSTGRLSSTDPNLQNIP- 699 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G+ ++ AD + IE R++A Sbjct: 700 -----------------------IRTATGRLIRQAFIAPEGRVILAADYSQIELRLMAHF 736 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ AF G DI+ T A+ + V+ +R K + Sbjct: 737 SGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAIN--------------FG 782 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + ++ + + + Sbjct: 783 LLYGMS------------------------------AFGLAKQLQMSRSEAQDYIDMYFE 812 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ GV + + R+L D Sbjct: 813 RYPGVKDYMINTRASAYEHGYVETIL--------------------------GRKLYTPD 846 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTV 628 + + R Q + D++ M K + ++L V Sbjct: 847 INHSNRMVKQGA---ERAAINAPL------QGSAADLIKLAMIAVDKVLPKHQAKMLLQV 897 Query: 629 HDEIVSETPDTPYFSVGTLC-SLM-----TKNPS--WAKG--LPLKAEGYEAKRY 673 HDE+V E + L M W +PL E + + Sbjct: 898 HDELVFEVDANKVDEISQLITDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNW 952 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 96/673 (14%), Positives = 178/673 (26%), Gaps = 152/673 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSA-------MPS 55 + ID ET S +A +A + + A ++ + D Sbjct: 318 IAIDTETTSE----------HAVEADLVGISIAIGEQAWYVPIDHAHTDTHRNMPTADVQ 367 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 L+ L ++ V N ++ I+ ++ + +P R T + + L Sbjct: 368 KLITALDRSDLLLVGQNIKYDLIVLQRH-DMALPQPRLFDTMIASYLLDANRRSHGLDQL 426 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L+ K K D R A Y + Sbjct: 427 AVEFLSHEMIAFKDVVPKG------STFRDVDIPTAARYAGEDAAITLALYNLFAPRIEQ 480 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E + + E L + + G +D +++ L E + +L+E I +L G Sbjct: 481 EYHELFHAI---EMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEKIYELA-GE 536 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF GI V ++ T S+L +++ S Sbjct: 537 AFNINSPKQLATLLFEKMGIPPVKKTKTGYSTDVSVLEALAPQYEIANVLTQYRMVSKLL 596 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 +N LSE ++ GR+ + A+ TGR S QN+P Sbjct: 597 STYVNALSELINPWTGRIHTSFNQTVAN-TGRLSSSDPNLQNIP---------------- 639 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 VR + + G V AD + IE R+ A ++G++ Sbjct: 640 --------IRTEEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESM--------- 682 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NV 466 K+ A + Q Sbjct: 683 ----------------------------------------LKSFAEEKDIHAQTADAIFG 702 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 S + +A + + + + + + + ++ ++ GV Sbjct: 703 SSEPNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEGQALIDSYFLRYPGVKAYIDHQIA 762 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR D+ + A + Sbjct: 763 FAREHGYAQTLY--------------------------GRRRYLPDINSRNRNIREAAER 796 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642 +Q S DI+ M + ++L +HDE++ E P Sbjct: 797 N---------AVNMPIQGTSADIIKIAMNRIHQQLAPYQARMLLQIHDELLFEVPFEQAE 847 Query: 643 SVGT-LCSLMTKN 654 L M Sbjct: 848 PFSAFLQEQMESA 860 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 109/712 (15%), Positives = 193/712 (27%), Gaps = 166/712 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------QSAMPSD 56 + +D ET + A + + A P Sbjct: 365 IGVDTETDGLDAIG----------ANLVGVSLALGPNDACYIPLGHTGDGDLLGDGAPEQ 414 Query: 57 ---------LLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN 103 L L D T++ V N ++ +F + L I T +L+ Sbjct: 415 MDMKLALGILKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAAL 474 Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAW 156 + + K G K I ++ Y A+ ++ W Sbjct: 475 EAGQHNHGMDVLSELHFDHKPIPFKEVAGTGKKQITFDKVPVPEATKYAAEDADVTLRLW 534 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 L + AT ER + + + G ++ + + +L AQ Sbjct: 535 ALLKPRLSAEGMATL--------YETIERPMVPVVAQMERAGIFVERETLSRLSGDFAQR 586 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT- 271 + + + +L + L LF + ++ T L Sbjct: 587 MAQYEAEAYELAGREF-NMGSPKQLGEILFGEMELPGGKKTKTGAWATGADALEDLAAEG 645 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 ++L + S + L E ++ GR+ + GA +TGR S QN+ Sbjct: 646 HELPKILLGWRSLSKLKSTYTDALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQNI 704 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R+ +A G L+ AD + IE R+LA Sbjct: 705 P------------------------IRTEEGRKIRAAFVAQEGNVLIAADYSQIELRLLA 740 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 I D AF N DI+ T ++ F PI+ + R K + Sbjct: 741 HIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAIN-------------- 786 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + + KA+ Sbjct: 787 FGIIYGIS------------------------------AFGLARQLGIPRGEASEYIKAY 816 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 AK G+L+ ++ + RR+ Sbjct: 817 NAKFPGILKYMDEMKAFAREKGYVETAF--------------------------GRRIWM 850 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG--YDI 624 + G R+ Q + DI+ M K+G + Sbjct: 851 KGINGK----GPERGFAERQAINAPL------QGSAADIIKRAMVKMPAALEKSGLQAKM 900 Query: 625 VLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 +L VHDE++ E P ++ + +M P +PL E A + Sbjct: 901 LLQVHDELIFEAPKAEAEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSW 952 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 195/694 (28%), Gaps = 142/694 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 351 KIGIDTETTSLD----------AMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQLDLQY 400 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 401 VLGYLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 458 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + D Sbjct: 459 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 517 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E+++++ E + + + G +ID + + + E KL+++ Sbjct: 518 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 570 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 571 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 629 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 630 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 679 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 680 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 724 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + L Y G L + Sbjct: 725 AFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 779 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 780 NLSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNK 830 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G ++ R LV D+K Sbjct: 831 NANARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLVSDDLKSKL--- 875 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 I+Q +VL E P+ Sbjct: 876 --------------------IMQ-------------VHDE---LVL--------EVPEAE 891 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 SV L +M K +PL AE + Sbjct: 892 LDSVKEKLPQIMAKVDDGMLKVPLVAEVGVGMNW 925 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 203/702 (28%), Gaps = 163/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 D ET S P QA + ++A+ A+ + Sbjct: 363 TFCFDTETTSLDP----------YQAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFR 412 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 L T V N ++ ++ +T GI++ T V P ++ Sbjct: 413 PLLESTTQCKVGQNLKYDNLIL-RTYGIEVAP-PIFDTMVAHYLVAPDKPHNMNAIAESY 470 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN++ + G + ++ + +L EY D + T +L + Sbjct: 471 LNYAPIPIEALIGSRKSTQ--------------KSMRMVDVELVKEYACEDADITLQLKR 516 Query: 176 RL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E L + + +G +ID ++ ++ + E L+++I Sbjct: 517 LLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIH 576 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280 +L + L LF I T + +L+ IL+ Sbjct: 577 RLAGHAF-NISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILD 635 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L + +S DG++ + + TGR S QN+P Sbjct: 636 YRELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVT-TGRLSSTNPNLQNIP-------- 686 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + L+ AD + IE R++A + ++ Sbjct: 687 ----------------IRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHM 730 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF G+DI+ T +K F P+++V + R K G+ Sbjct: 731 IEAFKAGKDIHTATASKLFKVPLEQVDESMRRQAKTAN--------------FGIIYGIS 776 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +Q + + + +A+ + + Sbjct: 777 GFGLAQRL------------------------------GISRSEAIATIQAYFQEFHAIK 806 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + R+ D+ S Sbjct: 807 AYMDRVIGQAREQGYVTTLM--------------------------GRKRYLRDINSRNS 840 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632 L + +Q + +++ M + K ++L VHDE+ Sbjct: 841 TLRGFDERN---------AINTPIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDEL 891 Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + P + + M + A G+P++ + K + Sbjct: 892 VFDVPQHEIEIMREHVAYFMKNSLPLA-GVPVEVQIGLGKNW 932 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 108/700 (15%), Positives = 200/700 (28%), Gaps = 154/700 (22%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMP 54 M + + D ET PL A + A++W+ E + Sbjct: 368 MKQNSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIPFPEDKNQAQEII 417 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L + E + + N ++ + K I + K + + + ++ Sbjct: 418 ETLRPFFESEMIEKIGQNLKYDIKVLHKY-NIQVKGK-FFDSMLAHYLINPDMRHNMDVL 475 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN++ GK + + EY D + T Sbjct: 476 SETYLNYTPVSITELIGKKGKNQLS--------------MRDVPLEKQTEYAVEDADITY 521 Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L + P E L + + G +D + + L E + + K+L Sbjct: 522 QLAQHFRPELAEASTEELFNTIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQ 581 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKD 276 I K D + L LF + D ++ T + +LS+ Sbjct: 582 SKIYKEADQEF-NIASPKQLGEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIR 640 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L S ++ L V GR+ A TGR S QN+P Sbjct: 641 NVLEYRGLSKLKSTYVDALPLQVEERTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP---- 695 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 VR + L+ AD + IE R++A ++ Sbjct: 696 --------------------IRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSE 735 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ED I+AF NGEDI+ +T +K F+ P+D+V++EQR+ K + + Y Sbjct: 736 EDTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVS-----AFGLS 790 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 DL + + ++ + + ++ D + ++G R Sbjct: 791 NQTDLSRTEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGR---------RRYL 841 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + + + ++ ++ Sbjct: 842 KDINGSNAIVRGAAERNAVNAPIQGSAADII---------------------KIAMINIH 880 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 S N T ++L VHDE+V Sbjct: 881 KKLSEGNYKTK--------------------------------------MLLQVHDELVF 902 Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + + +L M A +PL E + Sbjct: 903 DVHKAELEELKSLIQSEMENAYKLA--VPLDVELGLGDNW 940 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 101/722 (13%), Positives = 195/722 (27%), Gaps = 184/722 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 + +D ET L A A + + + D Sbjct: 366 IAVDTET---DDLS-------ATHAKLCGISLSTDTNCACYIPLGHLASDGLDFGGGDDL 415 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 +P D L L + ++ V N ++ + K+ GID+ + T +++ Sbjct: 416 KQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVLKRY-GIDVAP--YDDTMLMSYVVEG 472 Query: 105 --LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G ++ A + + Sbjct: 473 GLHGHGMDELSQLHLGHTPIPFKQVAGSGKT---------------LKSFKFVALKEATQ 517 Query: 162 YCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+ L P ER + + G R+D ++ L + Sbjct: 518 YAAEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQ 577 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSH 267 ++++ + L + F + + T +L Sbjct: 578 DFGTRMNAIEQEAHAHLGRPF-NLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKVLED 636 Query: 268 SNIT-------QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 Q L+L+ + + L E + T ++ TGR Sbjct: 637 IAEGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLASTTTGRL 696 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P +R+ IA G KL+ AD Sbjct: 697 ASNEPNLQNIP------------------------IRTGEGRKIRTAFIAKPGCKLISAD 732 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA I + KAF++G+DI+ T ++ F P+ ++ E R K + Sbjct: 733 YSQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINF--- 789 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ + + Sbjct: 790 -----------GIIYGISGFGLANQLGIDQG----------------------------- 809 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 K + + G+ + + Sbjct: 810 -EASRYIKTYFERFPGIKDYMDATKQFLRDNG--------------------------FV 842 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616 R++ ++ G + R +Q + DI+ M Sbjct: 843 QTLMGRKIHIPEINGKGGAIKAFA---ERAAINAP------IQGTAADIIRRAMMRMQPR 893 Query: 617 ATKNGY--DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAK 671 G+ ++L VHDE++ E P+ +V + +M P+ +PL E A Sbjct: 894 LDAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEVMQNAALPAVQISVPLVVEAKAAN 953 Query: 672 RY 673 + Sbjct: 954 NW 955 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 107/706 (15%), Positives = 193/706 (27%), Gaps = 169/706 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S + A I +++ + + Sbjct: 358 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVL 407 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112 + L +L D + + +++ +F GI + T + + P +L + Sbjct: 408 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 465 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + S + GK + Y D + T Sbjct: 466 ALRHVSRSGISYEDLCGKGKNQ---------------IPFAQVSVDKAAAYSCEDSDQTL 510 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ L P + E I G ID + + + KL+ Sbjct: 511 DVHNTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLE 570 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDL 277 E+ ++ + L F G+ +V + T + +L Sbjct: 571 EEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAEDYPLPAK 629 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + S + L++ DGR+ A TGR S QN+P Sbjct: 630 LLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVA-VTGRLSSNDPNLQNIP----- 683 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A GK + AD + IE R++A ++G++ Sbjct: 684 -------------------VRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDE 724 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AF NG D++ T A+ F +D+VS EQ Sbjct: 725 ALLSAFKNGLDVHRATAAEVFGVSVDEVSSEQ---------------------------- 756 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + L A + A + ++ G Sbjct: 757 ----------------RRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYPG 800 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + E RRLV ++ G Sbjct: 801 VKRYMDQTVELAHAQGYVETVF--------------------------GRRLVLPEINGG 834 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 R +Q + D++ + M +++ VHD Sbjct: 835 N---GPRKKAAERAAINAP------MQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHD 885 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V E P+ V + S+M +PL AE + K Sbjct: 886 ELVFELPEAARDWVQAEIPSIMAGVAD--LSVPLLAEIGFGSSWEK 929 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 187/692 (27%), Gaps = 131/692 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMG-----QYGLAKSLGIDNL 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ P L Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 882 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E +T Sbjct: 883 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 902 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 903 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 95/692 (13%), Positives = 187/692 (27%), Gaps = 154/692 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQ 59 D ET S P A + W + + + + L Sbjct: 367 DTETTSLDP----------RDAQLVGIGCCWSEGDIAYLPIGHRQGSNLDWELVKQSLQP 416 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116 D N ++ +F + GI + ++ + + +L + L Sbjct: 417 LWEDPNRPKSLQNCKYDLSIF-RAHGIRLQGIQF-DPMLASYVLDPEASHNLADLAATHL 474 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---EL 173 N K GK D P A+ + + + L Sbjct: 475 NLPTTSYKKLLGKEQ------SIADIPISKVAEYCGTDAYCAYRLVPILTEKLQKTDPRL 528 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + + G R+D + + + + + QE + L++ G Sbjct: 529 WDLF---IQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQELQSLEQKAYAQA-GETF 584 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF +D+ + T S+L + I+ + Sbjct: 585 NLNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGDHPLIETIVQYRTLAKLK 644 Query: 289 ILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L V SD GR+ + TGR S QN+P Sbjct: 645 STYVDALPALVRSDTGRVHTDFNQTV-TATGRLSSSNPNLQNIP---------------- 687 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R I G L AD + IE R+LA ++ E ++ F +GED Sbjct: 688 --------IRTEFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEGFRSGED 739 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ L + + + Sbjct: 740 VHT----------------------------------------------LTARLLLEKQE 753 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 TS + ++ + FA + + + + + ++ G+ + Sbjct: 754 ITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQRFNERYAGIFAYLRSTEAF 813 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR P+ RL + + Sbjct: 814 VEKHGYVETILGRRRYF------------------PNLSRLTGHRKQAELRA-------- 847 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+V E + + + Sbjct: 848 ---------AVNAPIQGSASDIIKVAMVRLRQKLQNFRSRLLLQVHDELVFEVDPSEWQA 898 Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M +PL + ++ Sbjct: 899 LKPLIQREMEGAVP--LSIPLVVDIQIGHNWK 928 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 98/702 (13%), Positives = 193/702 (27%), Gaps = 167/702 (23%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------PSDLL 58 D+ET S + QA ++A + Q+ + + L Sbjct: 328 FDVETDSLNYM----------QAHWVGISFAVEAGEAWYLPLVHQNGINLPFAETLAALK 377 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL- 114 + ++ + + F+R + + GI + T +++ ++ + Sbjct: 378 NLFENASIRKIGQHLKFDRHILARY-GISLNGV-IDDTMLMSYCYNSTATRHNMDDLADF 435 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN + G R + +Y D + T +L+ Sbjct: 436 YLNKQTIRFEDIAGSGAKQR---------------RFDEIDLETAMQYACEDADITLQLY 480 Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + + ER L + + +G +I D + + +A + K L + Sbjct: 481 QFFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQ 540 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNI--TQLAKDL 277 +L G+ + L+ LF + T + +L ++ Sbjct: 541 AYQLAGGVF-NLDSPKQLQEILFERLALPVIHKTPTGQASTNEEVLQKLAELRQSALPEI 599 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ILN A + L E + D + T + TGR S QN+P Sbjct: 600 ILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQNIP------ 653 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G ++ AD + IE R++A ++ ++ Sbjct: 654 ------------------IRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDER 695 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF +DI+ T A+ F+ + V + QR K + G+ Sbjct: 696 LQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAIN--------------FGLIYGM 741 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A + + T + ++ V Sbjct: 742 S------------------------------AFGLARQLNISRTQAAEYIDKYFHRYPQV 771 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 L + + RRL D+ Sbjct: 772 LAYMDSARQTAQQQGYVSTLL--------------------------GRRLYIPDIHNKN 805 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEI 632 R +Q + DI+ M + +++ VHDE+ Sbjct: 806 M---QRRRAAERLAINAP------MQGSAADIIKLAMVQFWQTYGAQKECRLLMQVHDEL 856 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E + +M +PL + +K + Sbjct: 857 VFEVATAALDIWQPRITHIMEHALP--LSVPLIVDCGVSKDW 896 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 187/692 (27%), Gaps = 131/692 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 331 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 380 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 381 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 438 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 439 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 498 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 499 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 552 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 553 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 611 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 612 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 659 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 660 -------------IRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 706 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 707 QNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 761 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 762 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 812 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ P L Sbjct: 813 NARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS------------ 860 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E +T Sbjct: 861 ----------------------------KLIM-QVHDE---LVL--------EVVETELD 880 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 881 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 912 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 187/701 (26%), Gaps = 159/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRDRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE V N ++R + I++ T + + + Sbjct: 402 LALLKPLLEDENAHKVGQNLKYDRGILANY-DIELRGI-VFDTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLSDRWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P L + + G +I ++ K E + Sbjct: 505 TLQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLN 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L++ ++ G + T L+ LF GI + + T + +L + Sbjct: 565 ELEQKAHEIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGL 773 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + Q E + L G L Sbjct: 774 ARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYL-------- 825 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + G A++ + M + P R Sbjct: 826 -PDIKSSNGARRAGAERAAINAPMQGTA--ADIIKRAMIAVDGWLQTEQPRVR------- 875 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 I+Q +V VH Sbjct: 876 --------------------------MIMQ-------------VHDE---LVFEVH---- 889 Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 SV + LM +PL E + + Sbjct: 890 ----KDDLESVSKKIHQLMEN--ETHIDVPLLVEVGSGENW 924 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 113/711 (15%), Positives = 201/711 (28%), Gaps = 174/711 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52 + D ET S +P A + W E + Sbjct: 368 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEE 417 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + L L E N+ F+R++ ++ GI + T + + +L Sbjct: 418 VLPALRPILESENYPKTLQNAKFDRLIL-RSQGITLKGV-VFDTMLASYVINPESSHNLT 475 Query: 111 NACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L L K + YC D Sbjct: 476 DLSLRYLPDLGIVAQSYSQLVPKG------------------KTIADLDINTVANYCGLD 517 Query: 167 VEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 V T ++ +++ + E+ L + + +G RID D + +L + + + Sbjct: 518 VFTTFQITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGE 577 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270 + L++ G + + L LF +D T ++L Sbjct: 578 TLESLEK-ASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKH 636 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + IL S ++ L E V SD GR+ + TGR S QN Sbjct: 637 DHPVINYILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQA-ITSTGRLSSSHPNLQN 695 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P S +R I +G LV AD + IE R+L Sbjct: 696 IP------------------------IRTEFSRQIRKAFIPESGWLLVSADYSQIELRIL 731 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ E I+A+ +D++ T F+ L Sbjct: 732 AHLSQEKMLIEAYNTNQDVHSLTAQLLFDKD--------EITADERRLG--------KII 775 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G+ Q+ FA + + TA + Sbjct: 776 NFGVIYGMGSQR------------------------------FAREVGVSATAGKQFIDR 805 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + +++ GV + + + RR Sbjct: 806 FNSQYPGVFEYLESQKLAAINQGYVETIL--------------------------GRRRY 839 Query: 570 YSDVKG-DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624 + +KG D LN Q++R +Q S DI+ M + + Sbjct: 840 FESLKGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARL 893 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 +L VHDE+V E P + + + + S M +PL + + + Sbjct: 894 LLQVHDELVFEVPLSEWEELQHQIKSTMENC--LFLSVPLVVDIHAGTNWM 942 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 114/711 (16%), Positives = 204/711 (28%), Gaps = 174/711 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ-------SA 52 + D ET S +P A + W E + Sbjct: 173 KPVAWDTETTSLEP----------RDANLVGIGCCWGSELSDLAYIPLNHTQGEMLNIEQ 222 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + L L E N+ F+R++ ++ GI + T + + +L Sbjct: 223 VLEALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGV-VFDTMLASYIINPESSHNLT 280 Query: 111 NACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L L K + YC D Sbjct: 281 DLSLRYLPDLGIVAQSYSQLVPKG------------------KTIADLDINTVANYCGLD 322 Query: 167 VEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 V T ++ +++ + E+ L + + +G RID D + +L + + + Sbjct: 323 VFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGE 382 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNI 270 L++ + G + + L LF +D T ++L Sbjct: 383 TLDNLEKTSHQAA-GEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKH 441 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + IL S ++ L E V SD GR+ + TGR S QN Sbjct: 442 DHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQA-ITSTGRLSSSHPNLQN 500 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P S +R I +G LV AD + IE R+L Sbjct: 501 IP------------------------IRTEFSRQIRKAFIPESGWLLVSADYSQIELRIL 536 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ E I+A+ +D++ T F D ++ E+R + Sbjct: 537 AHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRL--------------GKII 580 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G+ FA + + TA + Sbjct: 581 NFGVIYGMG------------------------------AQRFAREVGVSATAGKQFIDR 610 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + +++ GV + + + RR Sbjct: 611 FNSQYPGVFEYLESQKLAAINQGYVETIL--------------------------GRRRY 644 Query: 570 YSDVKG-DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624 + +KG D LN Q++R +Q S DI+ M + + Sbjct: 645 FESLKGRDRDRLNYQDEQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARL 698 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 +L VHDE+V E P + + + + S M +PL + + + Sbjct: 699 LLQVHDELVFEVPLSEWEELEYQIKSTMENC--LFLSVPLVVDIHAGTNWM 747 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 199/695 (28%), Gaps = 152/695 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET PL A + A++W+ E + L Sbjct: 375 VCFDTETTGLDPLT----------AELVGIAFSWEKGKGFYLPIPEDREAAQVIVDQLKP 424 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + ++ V N ++ + K G+D+ T + ++ L Sbjct: 425 FFESASIEKVGQNLKYDIKVLDKY-GVDVKG-PMFDTMLAHYLINPDMRHNMDVLAETYL 482 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ GK + + EY D + T +L + Sbjct: 483 NYTPQSIVELIGKKGKNQLS--------------MRDVDLEKQKEYAVEDADITLQLKEH 528 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P D E L + + G +D D + L + + +L++DI + Sbjct: 529 FTPELASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYE 588 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNR 281 + + L + LF + D ++ T + +LS+ +L+ Sbjct: 589 VAGEEF-NIGSPKQLGVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQNVLDY 647 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L V R+ A TGR S QN+P Sbjct: 648 RGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVA-ATGRLSSTDPNLQNIP--------- 697 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR I L+ AD + IE R++A ++ E+ I Sbjct: 698 ---------------IRTERGRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMI 742 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF +GEDI+ +T AK FN ++ V++EQR+ K + + Y DL Sbjct: 743 AAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTDL 797 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + + +++ D E + ++G R + + Sbjct: 798 SRGEAKELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGR---------RRYLKDINS 848 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + ++ ++ Sbjct: 849 SNAVVRGAAERNAVNAPIQGSAADII---------------------KIAMINIHKKFEE 887 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 +N + M L VHDE+V + + Sbjct: 888 MNCKSK----------------------------ML----------LQVHDELVFDIHND 909 Query: 640 PYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + L M + +PL E + + Sbjct: 910 ELEDMKKLIQGEMQNA--YKMTVPLDVEVGTGQNW 942 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 111/705 (15%), Positives = 211/705 (29%), Gaps = 168/705 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYL 61 +D+ET S P+ QA + + + + + +P L L Sbjct: 320 IFALDLETTSLNPV----------QAHVVGISLSCEAGVACYIPLAHRYFGVPEQLDLDL 369 Query: 62 RD---------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + V N ++ I+ K + G+++ + T + + ++ Sbjct: 370 VLKKLKPLLEDPKLKKVGQNIKYDLIVLK-SEGVNLVGVAF-DTMLASYILNPSGRRHNM 427 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L ++ K G A +L EY D + Sbjct: 428 NDMARDYLGYTTTKYKEVVGTASK---------------EIGFDKVDIELATEYAAEDAD 472 Query: 169 ATRELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ L PL + E L + + G ++D + KL +LI Q+ + Sbjct: 473 ITWRLYENLSPLLQGDDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLED 532 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276 ++I L + L + LF + ++ ++ T S+L D Sbjct: 533 QQKEIYSLAGEEF-NINSPKQLSVILFEKLELPVIKKTKNGYSTDVSVLEQLAAEHELPD 591 Query: 277 LILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L + L E + ++ GR+ + A TGR S QN+P Sbjct: 592 VVLTYRQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVA-ATGRLSSSNPNLQNIP---- 646 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A L+ AD + +E RVLA ++ + Sbjct: 647 --------------------IRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLAHLSED 686 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + + AF GEDI+ T + F T +++ E R + K + Sbjct: 687 EALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNF--------------GIVY 732 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 GL S+ +K + + + + A ++ Sbjct: 733 GLSAFGLSKQLKI------YPK------------------------DAKKFIDQYFALYK 762 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V + V ++ RR D+K Sbjct: 763 KVKVYMVETVAQAKEVGYTLTLMN--------------------------RRRYLPDLKS 796 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVH 629 R + VQ + D++ M K ++L VH Sbjct: 797 QN---RQVRESAERIAI------NSPVQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVH 847 Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P+ + L M + +PL + + + Sbjct: 848 DELVFECPEDEEQEMRALVTKEMEEVMP--LKVPLIVDIGWGENW 890 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 112/712 (15%), Positives = 209/712 (29%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------- 52 +IET S P+ QA I + A E Sbjct: 380 YFAFNIETTSLNPI----------QAKIIGFSLALQPEKAAYIPLEHTEEGCDLLGGGCV 429 Query: 53 --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + + L L D+ V+ + +N + ++ K+ I ++ + +++ Sbjct: 430 VTQIETQKVLALLKPILEDQAVLKIGYNMKYNWLIMKQYA---IVTQPFDDIMLISYALD 486 Query: 105 LP---SSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157 + L K GK + + + Y A+ ++ WQ Sbjct: 487 AGTSTHNRDILSERWLKHKPIAYKDLTHNGKKITSFAQVDLKQATFYAAEGADITLRLWQ 546 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + ++++RL +R L + + +RG +D ++ +L +AQ Sbjct: 547 VLKPQLVAQGVT--KIYERL------DRPLIEVLAKMEERGILVDRQILSRLSCELAQAA 598 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NIT 271 L+E+I +L G + L LF G+ ++ T IL Sbjct: 599 LSLEEEIYQLV-GERFNIASPKQLSDILFGKMGLPGGVKTKNGQWSTSAQILEELAAEGH 657 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L + ++ R + + L + GR+ + TGR S QN+ Sbjct: 658 TLPRKIVDWRQ-LTKLKSTYTDALPYYILPETGRVHTNYSLAT-TSTGRLSSSEPNLQNI 715 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R+ IA G L+ AD + IE R+LA Sbjct: 716 P------------------------IRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILA 751 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AFA +DI+ T ++ F ++ + + R K + Sbjct: 752 HIANITALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINF------------- 798 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ A + + + Sbjct: 799 -GIIYGIS------------------------------AFGLANQLSISRNEASRYIDIY 827 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + G+ + RR+ Y Sbjct: 828 FERFPGIKDYMETTKSFARQHGYVETIF--------------------------GRRIHY 861 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624 ++K S + T R +Q + DI+ M K + Sbjct: 862 PEIKATNSQIRTF---NERAAINAP------IQGSAADIIRRAMIQMEGALKKEKLSAKM 912 Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 +L VHDE++ E P+T L +M P+ + +PLK + A+ + Sbjct: 913 LLQVHDELIFEVPETESEKTKVLVTKVMENAAMPALSLSVPLKVKVAAAQNW 964 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 94/697 (13%), Positives = 192/697 (27%), Gaps = 153/697 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET S L +A + +++ + + ++ Sbjct: 349 RIVSLDTETTSLNAL----------EAELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398 Query: 62 ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ + + GI + T + L ++ + Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLRNY-GITMKG-PLFDTMIAHYLLQPELRHNMDDMAET 456 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + G K + D Y D + T +L Sbjct: 457 YLRYKTIHIDQLIGAKGKDQLNMRSLAPEQIVD---------------YACEDADITLQL 501 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 P + E L + + G ++D+ + ++ + ++ ++ Sbjct: 502 KNIFEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQK 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF + + ++ T + L D I Sbjct: 562 IYELA-GETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEI 620 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + V+ G + + + TGR S QN+P Sbjct: 621 LKYRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQAT-TATGRLSSSDPNLQNIP------ 673 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 G +R C I + G AD + IE R++A ++G++ Sbjct: 674 ------------------VRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDEN 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF G DI+ T AK + PID+V++++R K + Y L Sbjct: 716 MIEAFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITV-----FGLAERL 770 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++++ F + Q +++ ++ + + + L + Sbjct: 771 NIERNEAKQLIEGYFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLA---------DI 821 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + Sbjct: 822 NSQNATVRGYAERNA----------------------------------------INAPI 841 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 +L R Y E + M L VHDE+ Sbjct: 842 QGSAADIIKLAMVRIYERFNNEG---------IKSKMI----------LQVHDELNFSVL 882 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +A +PL A+ + Sbjct: 883 PNEKEQVEKIVLEEMQNA--FALKVPLIADAGWGANW 917 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 100/697 (14%), Positives = 188/697 (26%), Gaps = 153/697 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSD---L 57 + L +D ET S + A + ++A ++ + Sbjct: 351 NILSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIF 400 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 + ++ V N ++ + GI+I K + T + L ++ Sbjct: 401 KPLYENPEILKVGQNIKYDYEVLINY-GIEIQGKMF-DTMLAHYLIQPELYHNMDYLAEV 458 Query: 116 -LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LN+ + G K + + S Y EY D + T L Sbjct: 459 FLNYQTIHIEELIGPKGKNQKSMRDLAPSDIY---------------EYAAEDADITLRL 503 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L E L + + G ID D + + E + +++ Sbjct: 504 KNVLESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHH 563 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I +L G + + LF I + ++ T + +L D I Sbjct: 564 IYELA-GESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEI 622 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 LN ++ L + ++S G + + + TGR S QN+P Sbjct: 623 LNYRGLKKLLGTYIDALPKLINSRTGHIHASFNQA-ITATGRLSSSDPNLQNIP------ 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C I G AD + IE R++A ++ + Sbjct: 676 ------------------VRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPN 717 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF G DI+ T AK ++ I +V+ QR K + Y T + Sbjct: 718 MVEAFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYG-----ITTFGLAQRM 772 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +++ F + +++ ++ E + L R + Sbjct: 773 NIENREAKQIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHR---------RRYLPDI 823 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + I + R +G Sbjct: 824 NSKNGTVRGFAERNAINAPIQG---------------SEADIIKVAMIRIFNRFRAEGIR 868 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 S + I+Q VHDE+ Sbjct: 869 SKM--------------------IIQ------------------------VHDELNFSVY 884 Query: 638 DTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL A+ + Sbjct: 885 PEEKEKVEKIVVEEMQNA--YQLSVPLVADAGWGNNW 919 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 190/701 (27%), Gaps = 165/701 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + ID ET S + A + +++ +++ + Sbjct: 350 VSIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKP 399 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 + +M + N ++ + + G+ + K + T + L ++ L Sbjct: 400 LYESDKIMKIGQNIKYDYEVLTRY-GVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETLL 457 Query: 117 NFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + G K + + + Y EY D + T L Sbjct: 458 GYQTIHIEELLGPKGKKQKNMRDLSPTDIY---------------EYAAEDADITLRLKN 502 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E L + + G +D + + ++ + K+ +++I Sbjct: 503 VLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIY 562 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 K + + LF I D ++ T + +L ILN Sbjct: 563 KEAGEEF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILN 621 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L + ++ G + + + TGR S QN+P Sbjct: 622 YRGMKKLLSTYIDALPKLINPRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP-------- 672 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R C I +G AD + IE R++A ++ ++ + Sbjct: 673 ----------------VRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMM 716 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G DI+ T AK ++ IDKV+ QR K G+ Sbjct: 717 EAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANF--------------GIIYGITT 762 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +Q + + + + + + V Sbjct: 763 YGLAQRMDIPNG------------------------------EAKELIEGYFRTFPKVQV 792 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + E RR +D+ + Sbjct: 793 YMEHAKEVARAKGYAETLFH--------------------------RRRYLADINSRNA- 825 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 T R +Q DI+ M + ++L VHDE+ Sbjct: 826 --TVRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELN 877 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ K + Sbjct: 878 FSVFPEEREQVERIVIEEMQNAYP--LNVPLIADAGWGKNW 916 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 190/694 (27%), Gaps = 151/694 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----PSDLLQ 59 D ET S L A I + E + L Sbjct: 356 FSFDTETDSKDALR----------ANIVAITLCAESGRAFFIPLPEDEEIGKRRLDLLRP 405 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 D + V N ++ + + GI++ + T + L ++ L Sbjct: 406 LFADTAIGKVGQNMKYDIQVLSRY-GIEVRG-QLFDTMIAHYLLFPDLRHNMDEMAETLL 463 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + G + Q +Y D + T +L++R Sbjct: 464 GYCTVHYSDLVGSDKQEVHIR---------------QVPLQNLADYAMEDADITWQLYER 508 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + + G ++D +++ + + +E ++++++I + Sbjct: 509 LNAMLSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYR 568 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 L G + + LF I + ++ T + IL LIL+ Sbjct: 569 LA-GHSFNINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDY 627 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L E DG+L + A+ TGR S QN+P Sbjct: 628 RGIKKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP---------- 676 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ + + + AD + IE R++A ++ ++ I+ Sbjct: 677 --------------IRTEVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQ 722 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +GEDI+ T +K + P+ +V+ + R K + Y L++ Sbjct: 723 AFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYG-----ISAFGLSERLNIS 777 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + F + +++ + L G L + + Sbjct: 778 RTEAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFL---------RDINSA 828 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + +L + + + Sbjct: 829 NAVVRGYAERNAINAPIQGSAADLI---------------------KLAMIRIHEEITER 867 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 K ++L VHDE+ Sbjct: 868 --------------------------------------KLRSRMILQVHDELNFNVLRPE 889 Query: 641 YFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V L M + +PL AE E + Sbjct: 890 AAEVRELVRSCMEGVMP-SLRVPLIAEIGEGANW 922 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 188/696 (27%), Gaps = 154/696 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----LLQ 59 +D ET S +A + + + + + + P L Sbjct: 379 FALDTETTSLNTF----------EAELVGISISVKPQEAVFIYCSPEGLKPEKALSILKP 428 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116 L + + N ++ ++ K GI + + T + + +L + L Sbjct: 429 VLENPAIEKWGQNLKYDILVLKNY-GIQLAPTGF-DTMLASYVINPEETHNLDDLAQRHL 486 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + G + P + Y +D + L Sbjct: 487 QYRTTTYSELCGTG---------KKAVPLR------QVPLEALKNYACQDADIALRLQNT 531 Query: 177 LIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + RG +D + K +A L E I Sbjct: 532 LEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 + L LF G+ ++ T +L + IL Sbjct: 592 ATAGSTF-NIDSPKQLGEILFTRLGLPAKKTTKTGYSTNVQVLEELAMIHPIAQDILEYR 650 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L + ++ G+L + + + TGR S QN+P Sbjct: 651 SLQKLRSTYIEALPKILNPATGKLHTSFNQH-ITATGRLSSSNPNLQNIP---------- 699 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IAS L+ AD + IE R+ A ++G+ I+ Sbjct: 700 --------------IRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIE 745 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF N EDI+ T F+T + V+ + R K + + Y + L++ Sbjct: 746 AFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYG-----IQPYGLSMRLNIS 798 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 Q + + + Q E L+G + R + Sbjct: 799 QKEAKAIIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGN------ 852 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + Sbjct: 853 ---IRKAAERAAMNTPVQGTAADIIK---------------------------------- 875 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 Y L EN +Q K ++L VHDE+V ET + Sbjct: 876 ------------YAMCLIENTMQ-------------EHKMHSTMLLQVHDELVFETNEEE 910 Query: 641 YFSVGT-LCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 + + T + + M + K +P++ + K + Sbjct: 911 HEKLETMVVASMKEAALVCGLKQVPVEVDTGIGKNW 946 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 108/694 (15%), Positives = 188/694 (27%), Gaps = 135/694 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 352 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQLDLQD 401 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 459 Query: 111 NACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + GK I + Y A+ + + D Sbjct: 460 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAH-LRAQMDA 518 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E+++++ E + + + G +ID + + + E KL+++ Sbjct: 519 K-QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAA 571 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNR 281 + L+ LF GI ++ T +++L +IL Sbjct: 572 AGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQN 630 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L E +S DGR+ T A TGR + QN+P Sbjct: 631 RSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP--------- 680 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR A G +V AD + IE R++A ++G+ I Sbjct: 681 ---------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIA 725 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF NGED++ T A+ F + VS EQR K + L Y G L + Sbjct: 726 AFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGID 780 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S F + + ++Q + L G L + Sbjct: 781 NISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYL---------PDIRNK 831 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + G ++ P L Sbjct: 832 NTNARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQS---------- 881 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 M +VL E +T Sbjct: 882 ------------------------------KLIM-QVHDE---LVL--------EVVETE 899 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 900 LDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 933 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 194/676 (28%), Gaps = 142/676 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 D ET S A + ++++ + Sbjct: 392 FCFDTETTSLD----------TTDAELVGLSFSYLAGEAFYIPVPADRQQAEEIVGYFRA 441 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-AL 116 +E + + N ++ ++ K GI++ K T + + L Sbjct: 442 VFENENIEKIGQNIKYDMLVLKNY-GIEVHGK-LSDTMLAHYLLEPDKRHGMDILAASYL 499 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ GK + D + T+ A F + E + + Sbjct: 500 NYEPVSITSLIGKKGGKQGNM--RDVAIPEITQYAGEDADITFQLHSIFSRELPKVNAAK 557 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E L + ++ + G R+D++ + ++ ++ + ++ + +I + G + Sbjct: 558 LFN--EVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAA-GQSFNIS 614 Query: 237 QTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + + ++ T + ILS L IL+ Sbjct: 615 SPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYRELQKLKSTY 674 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L VSS GR+ + A TGR S QN+P Sbjct: 675 VDALPTMVSSRTGRIHTSYNQAVA-ATGRLSSTNPNLQNIP------------------- 714 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +++ AD + IE R++A +G+ +AF G DI+ Sbjct: 715 -----IRTPRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEAFNQGRDIH 769 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 TT +K F P+++V+ + R K++ G+ Sbjct: 770 ATTASKVFQVPLEEVTSDMRRKSKMVNF--------------GIIYGIS----------- 804 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A + + + +A+ + V + Sbjct: 805 -------------------AFGLAQRLGIPRGEASEIIRAYFEEFPAVKGYMDKVVNDAR 845 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ T R Sbjct: 846 EREYVETIL--------------------------GRRRYLPDINSRNQ---TNRGYAER 876 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + D++ M N K ++L VHDE+V + + Sbjct: 877 NAINAP------IQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVFDAHYSEIDL 930 Query: 644 VGT-LCSLMTKNPSWA 658 + + LM A Sbjct: 931 LKERVDELMRNAIPMA 946 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 107/696 (15%), Positives = 201/696 (28%), Gaps = 152/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 + +D ET S +P+ A + + A+ + + S Sbjct: 411 IGLDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKSS 460 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114 L +L + + + N +++ +F GI + + + L L Sbjct: 461 LQPFLENPQLGKIGQNMKYDQHVFANH-GIALQGIS-GDAMLASYIVESHLGHGLDELSE 518 Query: 115 A-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK I + Y C A+ + D + Sbjct: 519 RWLQLPTITYESLCGKGAKQIPFADVPLDKAAEYACQDADFALRIEQHLRTQMDDKQLAM 578 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E + + + G ID + + + + +E +L+ + L Sbjct: 579 --------YQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFALAGKP 630 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASS 285 + L+ LF G+ + + T +S+L LIL + + Sbjct: 631 F-NLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQHRSLA 689 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L E + GR+ A TGR + QN+P Sbjct: 690 KLKSTYTDKLPEMILPATGRVHTNYAQAVA-ITGRLASNNPNLQNIP------------- 735 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G+ +V AD + IE R++A ++G+ AF N Sbjct: 736 -----------IRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAFQN 784 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 ED++ T A+ F P + ++ EQR K + G+ ++ Sbjct: 785 NEDVHRRTAAEVFGVPPEHITAEQRRYAKTIN--------------FGLIYGMSSFGLAK 830 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + E+ K + A++ GV + + Sbjct: 831 ALGIDNMS------------------------------AEMFIKRYFARYTGVAEYMERT 860 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + + RRL D+ G A Sbjct: 861 KEQARSLGY--------------------------VETLFGRRLYLPDIHGSAIRRAAAE 894 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 + +Q + D++ M +V+ VHDE+V + P+ Sbjct: 895 RAAINA----------PMQGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPE 944 Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M+ +PL AE K + Sbjct: 945 DELAHIKAQLPQWMSDVGEGVLAVPLLAEVGAGKNW 980 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 108/710 (15%), Positives = 190/710 (26%), Gaps = 155/710 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ---------SA 52 + +D ET P A + W + Q Sbjct: 392 VAVDTETTDLNPFK----------AQLVGIGVCWGPWLSDLAYIPVGHQAPEGSQLPLEV 441 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + L +L N+ ++R+ + + T + SL Sbjct: 442 VLEQLAPWLSSPKHPKALQNAKYDRL--ILLRHGLLLGGVVMDTLLADYLRDAAAKHSLD 499 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + + GK + YC DV Sbjct: 500 VMAERDYGITPTVFSDLVGKPKDGKAS-------------CFAEVPIDQAALYCAMDVHL 546 Query: 170 TRELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 TR+L L E L + + G RIDL + L + + + Sbjct: 547 TRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTYLDTLSKEMGETL 606 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQ 272 +L+ + + + L LF G+D T ++L Sbjct: 607 TRLEANAKQAAGVDF-NLASPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDKLADDH 665 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L S ++ L + V + GR+ + TGR S QN+P Sbjct: 666 PVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAV-TATGRLSSSNPNLQNIP 724 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 S +R + L+ AD + IE R+L Sbjct: 725 ------------------------IRTEYSRRIRKAFLPQEHWTLLSADYSQIELRILTH 760 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++GE+ +A+ +G+D++ T D+++ ++R +GK + + Y GA+ F Sbjct: 761 LSGEEVLQQAYRDGDDVHALTARLL--LDKDEITADERRLGKTINFGVIYGMGAQRF--- 815 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + Q + E + + + + + ++G Sbjct: 816 --ARETGVSQAEAKEFLSKYRERYPKVFAFLELQERLALSRGYVETILGRRRPFHFDR-- 871 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 L K I L +RR Sbjct: 872 -----------------------------------NGLGRLLGKDPFEIDLDVARR---- 892 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIV 625 +Q +R +Q S DI+ M ++ Sbjct: 893 ---------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQQSLPARLL 937 Query: 626 LTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRYR 674 L VHDE+V E + V L S M +PL AE + Sbjct: 938 LQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVAETGSGSNWM 985 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 187/701 (26%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + T + Sbjct: 359 FAFDTETTSVHYMK----------AELVGVSFAIEVGKAAYVPLTHDYEDAPEQLDKEWV 408 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L +T+ + N ++ + I + + T + + ++ Sbjct: 409 LAQLKPLLESKTIKKIGQNLKYDANVLS-HYDIALQGIEF-DTMIESYCYNSVATRHNMD 466 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L++ + GK + + G Y D + Sbjct: 467 ALALKYLDYQTVHFEDVAGKGAKQL---------------TFNQIDIEKAGHYAAEDADI 511 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + P + E L + + G ID D++ + + Q Sbjct: 512 TLRLHHAIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLD 571 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ + L G + L+ LF I + T + +L + Sbjct: 572 ELEIEAHNLA-GKSFNLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEVLQELALDYPL 630 Query: 275 KDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL S + L V RL + + TGR S QN+P Sbjct: 631 PKVILENRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAV-TATGRLSSTDPNLQNIP-- 687 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA K+V D + IE R++A ++ Sbjct: 688 ----------------------IRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLS 725 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF+ G+DI+ T A+ F + +V+ +QR K + L Y Sbjct: 726 NDKGLVTAFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMS-----AFGL 780 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + F+ + ++ + Q E + L G L + Sbjct: 781 AKQLHIGRQQAQEYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNG 840 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K +G + + A + + D I Sbjct: 841 MRK-----KAAERAAINAPMQGTAADIIKKAMLAVDSWLLEQNDDRI------------- 882 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH-DEI 632 M ++ +H D Sbjct: 883 -------------------------------------KMTM-QVHDE---LIFEIHQD-- 899 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + E + L +LM +PL AE + Sbjct: 900 IVE------ETTAKLVTLMNDAVE--LSVPLIAEAGIGDNW 932 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 107/692 (15%), Positives = 186/692 (26%), Gaps = 138/692 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 K+ ID ET S A A + + A+ Sbjct: 352 KIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 401 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F I + + + + L L Sbjct: 402 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIA-GDSMLASYIIESHLGHGLD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + T + A +L + Sbjct: 460 ELSERWLGLETITYESLCGKGAKQISFADVAIGQATEYTAQDADFALRLEAHLRAQMDAK 519 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 520 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 573 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 574 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYALPKIILQNRS 632 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E + DGR+ T A TGR + QN+P Sbjct: 633 LAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 680 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 681 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 727 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F + VS EQR K + L Y G L + Sbjct: 728 QNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 782 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 783 SAKTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNT 833 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ R L +K Sbjct: 834 NARAGAERAAINAPMQGTASDLIKRAMIDVS------------RWLDLDGLK-------- 873 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E P Sbjct: 874 ---------------------------TKLIM-QVHDE---LVL--------EVPKAELD 894 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + Sbjct: 895 LVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 115/690 (16%), Positives = 205/690 (29%), Gaps = 132/690 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQS-------AMPSDL 57 D ET + P A + W P V + + L Sbjct: 361 DTETTALNP----------RDAALVGLGCCWGAAPDQVAYLPLGHKEGQNLPLEETLAAL 410 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L + V N+ F+R++ + GI + T + + +LK+ C Sbjct: 411 RPILEGDRYPKVLQNAKFDRLVL-RFQGIQLRGV-VFDTMLASYVINPEASHNLKDLCQR 468 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + GK D P + + + K + + T L Sbjct: 469 YLPLQAQSYRTLVGKDQ------TLADLSPATVAQYCGLDVHTTYLLKEKLEADLTPRLR 522 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E L + + G RID D + +L + + Q+ L + + Sbjct: 523 QL---LLEVELPLEPILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDAVGQPF-N 578 Query: 235 SRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L LF G+D + T + L DLIL+ + Sbjct: 579 LASPKQLSELLFGTLGLDTKKTHKTKLGYSTDAATLEKLRGDHPVIDLILSHRTLAKLKS 638 Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V D GR+ + TGR S QN+P Sbjct: 639 TYVDVLPTLVRPDTGRVHTEFNQAV-TATGRLSSSSPNLQNIP----------------- 680 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R I G LV AD + IE R+LA ++ E + A+ G D+ Sbjct: 681 -------IRTEFSRQIRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLAAYQEGADV 733 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F +S +R +GK++ + Y G + F A + V Sbjct: 734 HRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQRFAREA-----GVSVAEAKVFI 786 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + M+ + ++G ++ Sbjct: 787 QRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAFES------------------- 827 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + + + + V PS + ++ L+ Sbjct: 828 ----------------RELQSLRGKPLDVLADVDPSKLK------------MSNYERGLL 859 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSV 644 R +Q S DI+ M ++L VHDE+V E + + Sbjct: 860 RAAANAP------IQGSSADIIKCAMVKLAPLLPPEKARLLLQVHDELVLEMTPEAWEHL 913 Query: 645 G-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 T+ +M+ +PL + Y A + Sbjct: 914 QTTIPEVMSTAVP--LSVPLAVDIYAAANW 941 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 200/700 (28%), Gaps = 162/700 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQY 60 + D ET + I + A + E++ + Sbjct: 388 EFCFDTETTG-FDIF---------NDRIVGMSLAVNPFEAWYIPFKEENTAEYTEIVRPL 437 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALN 117 ++ + + N F+ ++ + LG++I +++ T +L ++ LN Sbjct: 438 FENDRIAKIGQNIKFDLMVL-RQLGLEIRGRKY-DTMILHYLLDPESRHNMNALAEKYLN 495 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + GK + + EY D + T L L Sbjct: 496 YKPIEIETLIGKGSKQL---------------TMDLVNVERVKEYAAEDADVTLRLKHAL 540 Query: 178 IPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P + E + + I G RID + + +++ +L+ I + Sbjct: 541 YPQIEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEE 600 Query: 228 TDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282 + L LF I + M++ T + L DLIL Sbjct: 601 AGESQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILEYR 660 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L + V+ GR+ + + TGR S QN+P Sbjct: 661 GVKKLLSTYVEALPQLVNRRTGRIHTSFNQAV-TATGRLSSTNPNLQNIP---------- 709 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I L+ AD + +E R++A ++G++ I Sbjct: 710 --------------VREEMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIA 755 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA+GEDI+ T AK FN +D+V+ E+R K G+ Sbjct: 756 AFAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANF--------------GIIYGISAF 801 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 SQ ++ + + + + A + V + Sbjct: 802 GLSQRLE------------------------------IPRKEAKEIIDGYFASYPKVQEY 831 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ + RR +D+ + Sbjct: 832 MDNVVAKAKEEG--------------------------FVSTIFGRRRYLNDIASHNAIA 865 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 + +Q + DI+ M N + ++L VHDE+V Sbjct: 866 RGLAERN---------AVNAPIQGSAADIMKIAMINVHRRFAAEGIRSKVILQVHDELVV 916 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + V + M A + L + + Sbjct: 917 DMLRSEQERVVAIVTEAMESAA--ALKVRLVVDYGVGGNW 954 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 97/702 (13%), Positives = 190/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58 + ID ET S + A + +++ +++ + Sbjct: 349 FVSIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 + +M + N ++ + + G+ + K + T + L ++ Sbjct: 399 PLYESDKIMKIGQNIKYDYEVLTRY-GVTLQGKMF-DTMIAHYLIQPELHHNMDYMAETL 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L++ + G K + + + Y EY D + T L Sbjct: 457 LSYQTIHIEELLGPKGKKQKNMRDLSPTDIY---------------EYAAEDADITLRLK 501 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G +D + + ++ + K+ +++I Sbjct: 502 NVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 K + + LF I D ++ T + +L IL Sbjct: 562 YKEAGEEF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N ++ L + ++ G + + + TGR S QN+P Sbjct: 621 NYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I G AD + IE R++A ++ ++ Sbjct: 673 -----------------VRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF G DI+ T AK ++ IDKV+ QR K G+ Sbjct: 716 MEAFREGHDIHRATAAKIWHVDIDKVTDAQRKKAKQANF--------------GIIYGIT 761 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +Q + + + + + + V Sbjct: 762 TYGLAQRMDIPNG------------------------------EAKELIEGYFRTFPKVQ 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + E RR +D+ + Sbjct: 792 AYMEHAKEVARAKGYAETLFH--------------------------RRRYLADINSRNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 T R +Q DI+ M + ++L VHDE+ Sbjct: 826 ---TVRGFAERNAINAP------IQGTEADIIKVAMVRIWERFKKEGIRSKMILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ K + Sbjct: 877 NFSVFPEEREQVERIVIEEMQNAYP--LNVPLIADAGWGKNW 916 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 210/702 (29%), Gaps = 158/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54 ID ET S P +A + + + + + A + Sbjct: 318 KTFSIDTETTSLDPF----------EAKLVGISISTMEGKAYYIPVSHFGAKNISKSLID 367 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L Q L+++ V N F+ +FK ++G P+ T + A Sbjct: 368 KFLKQILQEKDYNIVGQNLKFDYEIFK-SMGFS-PNVPHFDTMIAAYLLNPDE------K 419 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 N E K G +I+ + + P + + + EY D + T +F Sbjct: 420 RFNLEELSLKYL-GYKMISFDELVNENVPLFGNDFSYVP--LERAVEYSCEDADVTYRIF 476 Query: 175 KRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++L + E L + + G D + + +L + ++ + E + Sbjct: 477 RKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMDGIKEKV 536 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILN 280 ++ G + + + LF I + T +L + L+L Sbjct: 537 FEIA-GETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTNAEVLEELSKEHEIAKLLLE 595 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++++ +++ R+ T G + TGR S QNLP Sbjct: 596 YRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTG-TSTGRLSSSNPNLQNLP-------- 646 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + ++ AD + IE RVLA ++ ++ Sbjct: 647 ----------------TRSEEGKEIRKAVRPQRQDWWILGADYSQIELRVLAHVSKDENL 690 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 +KAF + DI+ T AK F VS++ R +GK++ A+ G+ Sbjct: 691 LKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAII--------------YGVS 736 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 S+ + L + + + + ++GV Sbjct: 737 PYGLSKRI------------------------------GLSVSETKKIIDNYFRYYKGVF 766 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + K + + RR ++ Sbjct: 767 EYLKRMKDEARKKGYVTTLF--------------------------GRRRYIPQLRSKNG 800 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 ++ +Q + DI+ M N ++L VHDE+ Sbjct: 801 NRVQEGERI---------AVNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDEL 851 Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V E PD V + M +PLK + Y K + Sbjct: 852 VFEVPDNELEFVKDIVKDEMENAVK--LDVPLKVDVYCGKEW 891 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 107/688 (15%), Positives = 197/688 (28%), Gaps = 134/688 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDL 57 + +D ET S +A + + A + + + + L Sbjct: 371 RHIAVDTETTSLDTF----------EAELAGISIAVETGKARFISFAQSALDRDKTVEIL 420 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L + ++ + N ++ ++ KK GI++ + T + + +L + Sbjct: 421 KPLLENPSLPKIGQNLKYDMLVLKKY-GIELSPVAF-DTMLASYVLNPEEKHNLDDLAAH 478 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY-CKRDVEATREL 173 L + G + D + A QL G + K D E Sbjct: 479 HLGYRTTTFDELVGTGKTKQHIFEVDPEKLSDYACQDADLALQLEGVFRKKLDGETEL-- 536 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 L + E L + + G ID + K E + +E +L + + G Sbjct: 537 ---LWLCENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKEL-ELLTETIYAAAGSAF 592 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + + ++ T +L +L + Sbjct: 593 NIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYRSLQKLKST 652 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + V+ GRL T + + TGR S QN+P Sbjct: 653 YIDALPKMVNPLTGRLHTTFNQF-ITATGRLSSSNPNLQNIP------------------ 693 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I S L+ AD + IE R+ A I+G+ ++AF N EDI Sbjct: 694 ------IRSPLGKEIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLEAFRNREDI 747 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F+T D+++ + R K + + Y L++ Q Sbjct: 748 HTATAKVIFDT--DEITSDMRRKAKEVNFGVLYG-----IMPFGLSRRLNIPQKEAKAII 800 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + E ++G L R + L + Sbjct: 801 DTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTN---------LKKAA 851 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 +NT Sbjct: 852 ERA-----------------------------------------------AMNTPIQG-- 862 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 K N+ SR M++ ++L VHDE++ ET D + L Sbjct: 863 -TAADIIKCAMNLC--SSR------MRHL-NMKSVMLLQVHDELLFETTDAEKEPLSKLV 912 Query: 649 SL-MTKNPSWA--KGLPLKAEGYEAKRY 673 M K +P+ + K + Sbjct: 913 EQAMIDAAIRCGLKNVPVLVDTGIGKNW 940 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 108/692 (15%), Positives = 188/692 (27%), Gaps = 139/692 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + T+ + N +++ +F I + + + L L Sbjct: 403 VLGRLKPHLENPTLKKIGQNLKYDQHVFANY-DIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL++ Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L E +S DGR+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNI 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ R+ I Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNWLSDGI---------------------- 872 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E+V +T Sbjct: 873 ---------------------GS-----KLVM-QVHDE---LVL----EVV----ETELD 894 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 104/706 (14%), Positives = 209/706 (29%), Gaps = 156/706 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSAM 53 D ET S P+ QA + + A + Sbjct: 380 YFSFDTETTSLDPM----------QAKLVGFSLALQPNKAAYIPLEHIEGGNDLFGGERI 429 Query: 54 PSD---------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 L L ++ V+ + N ++ ++ ++ DI + + T +L+ Sbjct: 430 VGQIETQRALALLKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDTMLLSYVLD 486 Query: 105 LP---SSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQ 157 + L + K GK +++ + Y A+ ++ WQ Sbjct: 487 AGISTHGMDVLSERWLGHTPIAYKNLTCDGKKIVSFAQVDLKQATLYAAEDADITLRLWQ 546 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + ++++RL +R L + + +RG +D ++ L +AQ Sbjct: 547 VLKPQLVAQGMT--KIYERL------DRPLIEVLARMEERGILVDRQILSCLSGELAQAA 598 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS--NIT 271 L+E+I +L G + L LF G+ ++ T IL Sbjct: 599 LSLEEEIYQLA-GEQFNIASPKQLGDILFSKIGLPGGAKTKGGQWSTSAQILEELAAEGH 657 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L + ++ R + + + L +S GR+ + TGR S QN+ Sbjct: 658 MLPRKIVDWRQIAKLKST-YTDALPSYISPKTGRVHTNYSLAT-TSTGRLSSSEPNLQNI 715 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R+ IAS G L+ AD + IE R+LA Sbjct: 716 P------------------------IRTIEGRKIRTAFIASEGCLLLSADYSQIELRLLA 751 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AFA G+DI+ T ++ F I+++S + R K + + Y Sbjct: 752 HIADITALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYG-----ISA 806 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + + FE + +S+ + + + + G Sbjct: 807 FGLANQLGISREEASHYIRVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIH------ 860 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + + + + Sbjct: 861 ---YPEIKARDRQVRAFNERAAINAPIQGSA----------------------------- 888 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + L +E +S + + D Sbjct: 889 --ADIIRRAMIQMEGALEKE-------------GLSA----KMLLQVH-----------D 918 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 E++ E P + +M P+ + +PL+ + A+ + Sbjct: 919 ELIFEIPKAESEKTKAIVKKVMENATMPALSLSVPLEVKVMVAQNW 964 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 195/696 (28%), Gaps = 153/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET L A + +++++ E + Sbjct: 378 VCFDTETTGIDAL----------NAELVGMSFSFEKGKGFYVPFPEDQEEAQTLIEKFRP 427 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + +E + + N ++ + + + K T + ++ L Sbjct: 428 FFENENIEKIGQNMKYDLKILSNY-NMQVKGK-LFDTMIAHYLINPDMRHNMDVLSETYL 485 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++ + GK + + EY D + T +L + Sbjct: 486 KYAPKSIETLIGKKGKNQLS--------------MRDVPLEDIKEYATEDADITFQLKEH 531 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P+ + E L + + G R+D++ + + + +E ++ I + Sbjct: 532 FQPILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYE 591 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILN 280 + L LF I T + +LS+ IL Sbjct: 592 TAGEKF-NLASPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLSYLANEHQIVRDILE 650 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L V GR+ A TGR S QN+P Sbjct: 651 WRQMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVA-ATGRLSSTNPNLQNIP-------- 701 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA L+ AD + IE R++A + GE+ Sbjct: 702 ----------------IRTEKGRLIRKAFIARDENYTLLSADYSQIELRIIAALCGEENM 745 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 IKAF N EDI+ +T AK FN P+D+V+KEQR+ K + + Y + Sbjct: 746 IKAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVS-----AFGLSNQTN 800 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 L + + ++ + + +S D E + + G R + + Sbjct: 801 LSRKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGR---------RRYLKDIN 851 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + G + ++ ++ + Sbjct: 852 SANAIVRGGAERNAVNAPIQGSAADII---------------------KIAMINIHKKLT 890 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N ++L VHDE+V + + Sbjct: 891 SENW--------------------------------------KSKMLLQVHDELVFDVHN 912 Query: 639 TPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + M A +PL E K + Sbjct: 913 SELEKIQPMIKHEMENAFKMA--VPLDVEIGLGKNW 946 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 107/692 (15%), Positives = 189/692 (27%), Gaps = 139/692 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F GI + + + L L Sbjct: 403 VLGRLKPHLGNPALKKIGQNLKYDQHVFANY-GIALNGIA-GDAMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + + A +L + E Sbjct: 461 ELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDEK 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 521 QLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + L+ LF GI ++ T +++L +IL + Sbjct: 575 QPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRS 633 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L + +S D R+ T A TGR + QN+P Sbjct: 634 LAKLKSTYTDKLPDMISPQDNRVHTTYAQAVA-ITGRLASNNPNLQNIP----------- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 682 -------------IRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAF 728 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NGED++ T A+ F T + VS EQR K + L Y G L + Sbjct: 729 QNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMG-----QYGLAKSLGIDNL 783 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S F + + ++Q + L G L + Sbjct: 784 SAKNFIDRYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYL---------PDIRNKNA 834 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + G ++ R+ I Sbjct: 835 NARAGAERAAINAPMQGTASDLIKRAMIDVRNWLSDGIDS-------------------- 874 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 M +VL E+V +T Sbjct: 875 ----------------------------KLVM-QVHDE---LVL----EVV----ETELD 894 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L +M K +PL AE + + Sbjct: 895 FVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 926 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 184/701 (26%), Gaps = 156/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 ++ ID ET S A A + + A++ Sbjct: 354 RIGIDTETTSLD----------AMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQLDLQD 403 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 L +L + ++ + N +++ +F GI + + + L L Sbjct: 404 TLGRLKPHLENGSLKKIGQNLKYDQHVFANY-GIALRGIA-GDAMLASYIVESHLGHGLD 461 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A + EY +D + Sbjct: 462 ELSERWLGLPTITYESLCGKGAKQ---------------ISFADVAVEQAAEYAAQDADF 506 Query: 170 TRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G ID + + KL Sbjct: 507 ALRLEAHLRAQMDEKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLA 274 +E + + L+ LF GI + + T +++L Sbjct: 567 EEQAFQTAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPL 625 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E ++ GR+ T A TGR + QN+P Sbjct: 626 PKIILENRSLAKLKSTYTDKLPEMINPRTGRVHTTYSQAVA-ITGRLASSNPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 683 ----------------------IRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ + AF NGED++ T A+ F + VS EQR K + L Y G Sbjct: 721 GDKTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMG-----QYGL 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + +++ + L G L Sbjct: 776 AKSLGIDNLSAKNFIDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYL-------- 827 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G Sbjct: 828 -PDIRAKNANARAGAERAAINAPMQGTASDLI---------------------------- 858 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + R + G + M +VL E+V Sbjct: 859 ------KRAMIAVSSRLHSDGLES-------------KLIM-QVHDE---LVL----EVV 891 Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +V L +M + +PL AE + Sbjct: 892 ----ENELETVKEMLPQVMAEVAQGRLNVPLLAEVGVGGNW 928 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 193/702 (27%), Gaps = 165/702 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLL 58 L +D ET S + A + +++ +++ + M + Sbjct: 349 ILSLDTETTSVDAI----------DAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFK 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E ++ V N ++ + KK GI + K T + L ++ Sbjct: 399 PLYENEEILKVGQNIKYDYEVLKKY-GITLKGK-LFDTMIAHYLIQPELHHNMDYMAETL 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ + G K + + + D Y D + T L Sbjct: 457 LNYQTVHIEDIIGPKGKKQKNMRDLAPAEVSD---------------YACEDADITLRLK 501 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + E L + + G R+D + + + + + K + +I Sbjct: 502 NALEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 +L G + + LF I + ++ T + +L + IL Sbjct: 562 YELA-GETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKIL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L + V G + + + TGR S QN+P Sbjct: 621 EYRGIKKLLSTYIDALPKLVKPQTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I AD + IE R++A ++ ++ Sbjct: 673 -----------------VRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF G DI+ T AK ++ ++ V+ QR K G+ Sbjct: 716 MEAFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQAN--------------FGIIYGIT 761 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +Q + + + + + V Sbjct: 762 TYGLAQRMDIPNG------------------------------EAKELIADYFKTFPKVQ 791 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 ++ E RR +D+ + Sbjct: 792 AYMEEAKEVARRKGYAETIFH--------------------------RRRYLADINSRNA 825 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 T R +Q DI+ M N + ++L VHDE+ Sbjct: 826 ---TVRGFAERNAINAP------IQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDEL 876 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL A+ K + Sbjct: 877 NFSVYPEEKELVERIVLEEMQNA--YQLRVPLIADAGWGKNW 916 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 187/702 (26%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLL 58 ++ D ET QPL A + + + + + + Sbjct: 327 KQICFDTETTDIQPLK----------AELVGIGFGIHPKKAWYVPLNGKLGKQRVLEGVK 376 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-L 114 + + HN ++ + + GI I + + T + + SL+ Sbjct: 377 PLFENSAIGFYGHNVKYDWHVLQN-EGIQIQNICF-DTILASYILNAHSRQHSLEVLALE 434 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 GK + + EYC DV+ T L Sbjct: 435 YFGKVTIPISELIGKGKNVLSMRDV---------------PIERVTEYCCEDVDFTCRLK 479 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L E L ++ + RG +D+ + +L + + QE K L E I Sbjct: 480 EVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQLSKELTQELKTLQESI 539 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + + LF+ GI + T +L IL Sbjct: 540 YTMAGEEF-NLNSPKQVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAGKILEY 598 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L V R+ T A TGR S QN+P Sbjct: 599 RLLEKLRSTYVDALPSQVIPRTHRIHSTFNQSVA-ATGRLSSQDPNLQNIP--------- 648 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R G + AD + IE R+LA ++ + + Sbjct: 649 ---------------IRTEEGRKIRGAFRPEKEGWSFLSADYSQIELRLLAHLSQDPVLM 693 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF N EDI+ T A F P+++VSKEQR K + + Sbjct: 694 AAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGII------------------- 734 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 Q A + + + ++ + + Sbjct: 735 -------------------------YGQQAFGLARELGIEVKQASKFITMYFQRYPKIKE 769 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 E + R + ++ Sbjct: 770 YLDQSKENARATGKSVTLT--------------------------GRERIIPEILSKNMQ 803 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 + A +L +Q + D++ M + ++L +HDE++ Sbjct: 804 IRAAAERL---------AVNTPLQGTAADLIKMAMLKMDEEIEKQHLKGFMILQIHDELI 854 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 E PD L +M + L + K ++ Sbjct: 855 FEIPDEEISLFSQLVPEVMQSVM--LLNVSLVVDINIGKNWK 894 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 112/710 (15%), Positives = 200/710 (28%), Gaps = 168/710 (23%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE-------QSAMPSDL 57 D ET + +P A + W E Q + + L Sbjct: 391 DTETSALEP----------RDAALVGIGCCWGTETDASAYIPLAHTKGENLNQDIVLAAL 440 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L N+ F+R++F GI++ + + +L + Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINLTGV-VFDPMLASYVLNPDTSHNLTDLTQR 498 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + K + YC V AT +L Sbjct: 499 YLGLTIQNYVDLVPKG------------------KTIADINISAVANYCCLQVYATFQLV 540 Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +L + E+ L + T+ G RI+ + +L + + + KL E Sbjct: 541 AKLREELAKTPNLDKLLREVEQPLESVLATVEYTGVRINSAYLHELSQQLEIDLAKLQEQ 600 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLA 274 +L + L LF G+ TL+ L + T Sbjct: 601 ATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEK-LQEVDDTGFV 658 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I R S ++ L V D R+ A+ TGR S QN+P Sbjct: 659 NAIIEYR-TLSKLKSTYVDALPALVRPDTQRVHTDFNQT-ATSTGRLSSSNPNLQNIP-- 714 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 S +R + +G + AD + IE R+LA ++ Sbjct: 715 ----------------------IRTAFSRQIRKAFLPESGWLMAAADYSQIELRILAHLS 752 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 E ++A+ EDI+ T F + V+ ++R I K + + Y G+ F Sbjct: 753 QEPLLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLKF----- 805 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + N E + + ++ ++ Q + ++G Sbjct: 806 SRSTGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFDFTNN--- 862 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 S R+L S Sbjct: 863 --------------------------------------------------SLRKLKGSKP 872 Query: 574 K----GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIV 625 + L + L+R +Q S DI+ M + ++ Sbjct: 873 EDIDLSKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLL 926 Query: 626 LTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 L VHDE+V E P + + + S+M +PL + + + Sbjct: 927 LQVHDELVFEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 188/703 (26%), Gaps = 139/703 (19%) Query: 2 SKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQSAMPS--- 55 ++ +D ET S PL A + + +E + QS Sbjct: 380 KEIVALDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQ 429 Query: 56 --------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-- 105 +L ++ N F+R +F G+++ + T + Sbjct: 430 LAIEDVFLNLRTWIESPEKEKTLQNCKFDRQIFYNH-GLNLSGVTF-DTLLADYILNNQE 487 Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L C F K GK K + + + Sbjct: 488 KHGLSEICFREFGFKPPSFKETVGKN------KDFSFVDINHASIYCGYDVFLTYKIAKI 541 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +E + + E L + + G ID+ + +L + ++E++ Sbjct: 542 FKERFRKEKKELTKLFKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENV 601 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLIL 279 ++ + L LF +D T +L ++ Sbjct: 602 FEIAKQEF-NLSSPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPYLI 660 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 S ++ L ++ GR+ A+ TGR S QN+P Sbjct: 661 KHRTLSKLLSTYIDALPNLINKKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP------- 712 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 S +R + G KL+ AD + IE R+LA +A E+ Sbjct: 713 -----------------VRTEFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEIL 755 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I AF +DI+ T F ++ ++R +GK + + Y G K A G+ Sbjct: 756 ITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINFGVIYGMG---IKKFARSTGVS 810 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + + + + + G E Sbjct: 811 TT--EAKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKFDK--------- 859 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 L K I L ++R+ Sbjct: 860 ----------------------------NGLGRLIGKEPYEIDLQTARKA---------- 881 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEI 632 +Q +R +Q S DI+ M K ++L VHDE+ Sbjct: 882 ---GMEAQSLRAAANAP------IQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDEL 932 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 + E L M +PL + + Sbjct: 933 LFEVKPDFLEITKQLVKETMEDCVK--LKVPLLVDIGVGNNWM 973 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M+ A +PL E + Sbjct: 886 VDQVSEQIRPHMSGAAELA--VPLLVEVGVGHNW 917 >gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 194/705 (27%), Gaps = 170/705 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S P+ QA + + + + + + Sbjct: 287 VALDTETTSLDPM----------QARLVGLSMSVEAGVACYIPVAHRGPDHAPQLPKQEV 336 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111 L +L D + HN+ ++ + G+ + T + A +++ Sbjct: 337 LDRLRPWLEDSKAHKLLHNAKYDTHVLMN-EGVALAGVA-EDTMLQAYVLESHKRVNMQE 394 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK Y D + T Sbjct: 395 LAERWLGRIGTTYEDLCGKGAKQIG---------------FDEIDVDKASHYACEDADFT 439 Query: 171 RELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P E I G ID L+ + Q+ + Sbjct: 440 LQLHQVLRPKVLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSHELGQKLLEF 499 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKD 276 + +L + L LF + + + T + +L+ Sbjct: 500 EAKAYELAGQPF-NLNSPKQLGEILFQRMQLPIVRKTPSGAPSTDEDVLTKLAHDYPLPA 558 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L + + L + ++ GR+ A TGR + QN+P Sbjct: 559 LLLEYRGLAKLKSTYTDKLPKMINPRTGRVHTRYAQA-AVITGRLASSDPNLQNIP---- 613 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR+ +AS G ++V AD + IE RV+A ++ + Sbjct: 614 --------------------VRTPEGRRVRAAFVAS-GGQIVSADYSQIELRVMAHVSDD 652 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + +AF G+DI+ T A+ F +VS EQR K + Sbjct: 653 ENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINF--------------GLIY 698 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ + N+ + A + A++ Sbjct: 699 GMGEFGLASNL------------------------------GITRDAARAYIDRYFARYP 728 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV + + RRL D++G Sbjct: 729 GVAAYMEQTKRMANELGYVETVF--------------------------GRRLWLPDLRG 762 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYD--IVLTVH 629 ++ R +Q + D++ M G +V+ VH Sbjct: 763 ---------AKGPRRAAAERAAINAPMQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVH 813 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E P + L +LM +PL AE + Sbjct: 814 DELVFEVPADEVDIIKKHLPALMCNVAQ--LSVPLVAEVGVGPNW 856 >gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 138/456 (30%), Positives = 219/456 (48%), Gaps = 21/456 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + G + YA+ + L YA D PVK+ D T+ +PS ++ Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+ E + + +DQ INDRG RID LV + + + + + Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQ--TSQQLTGL 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G++ +++ ++ +L + T ++ R S S++ K Sbjct: 237 ANPNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ DG + G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G VAD + +EARV+AW++GE+W+ AFA EDI Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQ 442 Y + ++ F P ++ E R GK+ ELALGY Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 109/721 (15%), Positives = 199/721 (27%), Gaps = 176/721 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + D ET + A A + A A + + Sbjct: 411 FVAFDTETTALD----------AMSAKLCGVALALEPGRACYIPLAHRAGDGLDFTGAGE 460 Query: 51 ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D++V+ + N ++ ++ ++ DI + T ++A Sbjct: 461 IAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMRRHG--DIRVAPYDDTMLMAYACD 518 Query: 105 LPSS------LKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + L + GK A Sbjct: 519 QGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKG---------------KAQSTFDCIAVD 563 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207 EY D + T L+ E R + + + G +D ++ Sbjct: 564 KATEYAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEVDRTVLS 623 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKS 263 +L AQ +L+++I +L G + + LF G+ + T Sbjct: 624 RLSGDFAQSLARLEDEIYELA-GQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAK 682 Query: 264 ILSHS-------NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGAS 315 +L + +L + ++L + + +D GR+ ++ Sbjct: 683 VLEDLVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSLA-ST 741 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +RS IA+ GKK Sbjct: 742 STGRLSSTEPNLQNIP------------------------IRTREGRMIRSAFIAAPGKK 777 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE RVLA +A AFA G DI+ T ++ F P+ + E R K + Sbjct: 778 LISADYSQIELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAI 837 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + FE + ++ M+ + E Sbjct: 838 NFGIIYG-----ISAFGLSQQLGIPRQEAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHV 892 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + L G + ++ + F Sbjct: 893 ETLFGRKIH---------FPEIKTPKWNMRQFFERAAINAPI------------------ 925 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 TA + R E QA R + Sbjct: 926 ------------------------QGTAADIIRRAMVRVPAALE---QAGVR---ARMLL 955 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672 E+V E D+ ++ + +M + P+ A +PLK + A+ Sbjct: 956 QVHD-----------ELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVDARAAQN 1004 Query: 673 Y 673 + Sbjct: 1005 W 1005 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 98/694 (14%), Positives = 183/694 (26%), Gaps = 146/694 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQ 59 D ET S +A I ++A + + D+ + + Sbjct: 374 FCFDTETTSLDTF----------EAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAP 423 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA-L 116 L D ++ N ++ + GI + R T + L ++ L Sbjct: 424 LLEDASIEKTGQNMKYDISVLGNY-GIGV-GGRMFDTMIAHYLLQPELRHNMDYMAEVFL 481 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + K D + +Y D + T +L Sbjct: 482 GYRTIHFGELFDDDKTKKSGKPIEDIRKVE---------LGKLKDYACEDADITLQLKNI 532 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 D E L + + G ID + E + +E +K++ DI+ Sbjct: 533 FGQKLCESSLKNLFFDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERDILA 592 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 D I + + LF I + ++ T + L LIL Sbjct: 593 YVDLPI-NISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLILEH 651 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + ++ ++ + S TGR S QN+P Sbjct: 652 RGLKKLLSTYVEALPKLINPKTNKIHTSFNQTVVS-TGRLSSSNPNLQNIP--------- 701 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA G L+ AD + +E R++A ++G+ + Sbjct: 702 ---------------VRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLS 746 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA+G+DI+ T A+ F PI++V+ + R K + Y LD+ Sbjct: 747 AFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYG-----ISAFGLSERLDIP 801 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + FE + + + ++ L G L + Sbjct: 802 RKEAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYL---------PDINSQ 852 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + ++ V + Sbjct: 853 NAGVRGFAERIAINAPIQGTAADII---------------------KIAMIKVDEAIRHH 891 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 N + + M HDE+V P Sbjct: 892 NYRS---------------------------QMMLQV-----------HDELVFNVPTEE 913 Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + M S +PL + + Sbjct: 914 VDEFRQSVKHAMETAAS--LRVPLIVDIGIGHNW 945 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 99/698 (14%), Positives = 194/698 (27%), Gaps = 155/698 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSA---MPSDL 57 L +D ET S + A + ++A ++ E+ + + Sbjct: 348 KNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYVAIPAEREKALRIVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 ++ ++ + N ++ + I+I K + T + L ++ Sbjct: 398 KPLYENKKILKIGQNIKYDYEVLLNY-DIEIKGKMF-DTMIAHYLIQPELHHNMDYLAEV 455 Query: 116 -LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LN+ + G K + + Y EY D + T L Sbjct: 456 FLNYQTIHIEELIGPKGKNQKNMRDLNPKDVY---------------EYAAEDADITLRL 500 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E L + + G +D + + + ++ + +K +E Sbjct: 501 KNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERMRKYEEK 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 I + + + LF I + ++ T + +L + I Sbjct: 561 IYEEAAEKF-NISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKNPIVENI 619 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 LN ++ L ++ G + + + TGR S QN+P Sbjct: 620 LNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFNQA-LTATGRLSSSDPNLQNIP------ 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C I G AD + IE R++A ++G++ Sbjct: 673 ------------------VRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDEN 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF G DI+ T AK ++ IDKV+ QR K + Y T + Sbjct: 715 MIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYG-----ITTYGLAQRM 769 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ T F+ + + +++ ++ + + + G L + Sbjct: 770 NISNSEAKDLITDYFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLA---------DI 820 Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + S + V Sbjct: 821 NSHNGTVRGFAERNAINAPIQGSEADIIKV------------------------------ 850 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 R R G + M L VHDE+ Sbjct: 851 -----AMIKIWNRFRQEG---------------IKSKMI----------LQVHDELNFSV 880 Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ + Sbjct: 881 YPEEKEKVEQIVIQEMQNAFH--LDVPLTADAGWGNNW 916 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 100/648 (15%), Positives = 185/648 (28%), Gaps = 152/648 (23%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L DE+V+ VA N ++ +L K+ I ++ + T +++ + Sbjct: 35 RLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPL 91 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K G + Y D + T Sbjct: 92 SEKFLGHTPIPYKDVAGSG---------------KANVTFDLVDIDRATHYAAEDADVTL 136 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L+ L P ER L + + RG +D ++ +L +AQ +L+ Sbjct: 137 RLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLE 196 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKD 276 ++I G + L LF G+ ++ T S+L Sbjct: 197 DEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPR 255 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I++ + + L V + + T ++ TGR S QN+P Sbjct: 256 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIP----- 310 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 311 -------------------VRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 351 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 KAF +G DI+ T ++ F P++ + E R K + G Sbjct: 352 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF--------------GIIYG 397 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + K + + G Sbjct: 398 ISAFGLANQLSIE------------------------------RSEAGDYIKKYFERFPG 427 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + RR+ Y +++ Sbjct: 428 IRDYMESRKAMARDKGYVETIF--------------------------GRRINYPEIRSS 461 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--------KNGYDIVLTV 628 + R +Q + D++ M ++L V Sbjct: 462 NPSVRAF---NERAAINAP------IQGSAADVIRRAMIKMEPALAQAGLAERVRMLLQV 512 Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 HDE++ E D + S+M P+ +PL+ + A + Sbjct: 513 HDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAATNW 560 >gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 971 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 143/474 (30%), Positives = 216/474 (45%), Gaps = 41/474 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ YAE I L YA D V++ D + +P ++L Sbjct: 1 MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98 L D+TV A N+ FER+ + L + W C+ V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQ 154 + GLP SL+ LN KM+EG+ LI FC ++ + + Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W F Y KRDVE + +RL P+ + + + LDQ INDRG IDL+L + + Sbjct: 179 KWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 A+ R+ L + + T + + +L G+ + + +K +L + Sbjct: 239 DAKSRESLMAALKEKTGLE--NPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLKTAQEP- 294 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++ R + S++ K + AV DGR RG QFYGA+RTGR +G Q QNLP+ Sbjct: 295 -LRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + S +R+ + G K VV+D + IEARV Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALG 440 ++W+AGE WK AFA G+DIY +T ++ F P V+ E R GK+ ELA Sbjct: 414 ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACI 467 Score = 187 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 19/204 (9%) Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + A+ + + ++WR+ + ++ W + +++ + Sbjct: 777 YGGSVGALKAMGALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPV-- 834 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------ATSQLMRER 591 V + + I LPS R+L Y + + AT + R Sbjct: 835 ----WVNNIRFVCQSGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLE 890 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +YG K ENIVQ +RDILC M+ IV VHDE++ E SV +C M Sbjct: 891 SYGPKFVENIVQGTARDILCYAMQTL--RCCAIVGHVHDELIIECSKE--VSVDAICEQM 946 Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675 ++ P WA+GL L+A+GYE Y+K Sbjct: 947 SRTPPWAEGLVLRADGYECAFYQK 970 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 105/719 (14%), Positives = 187/719 (26%), Gaps = 184/719 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + D ET + A + + A + Sbjct: 395 VAFDTETDALSSAT----------AGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 444 Query: 50 QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 +P + L L D V+ VA N+ ++ + + I T +++ Sbjct: 445 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 501 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L K G K I+ A Sbjct: 502 AGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHV-----------------ALPE 544 Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L+ L P ER + + + + G R+D + + Sbjct: 545 ATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRL 604 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSI 264 L + + + +L + + LF + G T + Sbjct: 605 LSNEFSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 663 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 L + ++L+ S L A++ GR+ + A+ TGR S Sbjct: 664 LESLALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALA-ATTTGRLSSS 722 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A+ G L+ AD + Sbjct: 723 DPNLQNIP------------------------VRTEEGRKIRKAFVAAPGHVLISADYSQ 758 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA I KAF G DI+ T ++ F+TPI+ + R K + Sbjct: 759 IELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN------- 811 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ A + + Sbjct: 812 -------FGIVYGIS------------------------------AFGLANQLGISQGEA 834 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 K + + G+ Sbjct: 835 GAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIF------------------------- 869 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATK 619 R++ D++ + R +Q + D++ M Sbjct: 870 -GRKINIPDIEAKSAAHRQFA---ERAAINAP------IQGAAADVMRRAMIRMPVALEA 919 Query: 620 NGY--DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 G ++L VHDE+V E P+ + +M K P+ A +PL E A + Sbjct: 920 AGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 978 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 102/686 (14%), Positives = 203/686 (29%), Gaps = 132/686 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 + +D ET S +A + + + D E+ + L Sbjct: 352 HIAVDTETTSLD----------VFEAELAGISLCAEAGKAFFIATTPDALERKEVVKQLK 401 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LA 115 L + + N ++ ++ KK GI++ + T + + +L + Sbjct: 402 PLLENPAITKSGQNLKYDMLVLKKY-GIELAPISF-DTMLASYVLNPDEHHNLDDMALRY 459 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + G R + + A+Q E + ++A +L Sbjct: 460 LGRTTTKYDELTGTGKQRRHIFEVEKEALTNYACQDADVAFQ-LEEVLQAQLQAEPQL-- 516 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E L + T+ G ID + + ++ E E + L ++I G + Sbjct: 517 -LALCTTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYAAA-GSSFNI 574 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF + ++ T +L T +L+ + Sbjct: 575 DSPKQLSHVLFTDLSLPTGKSTKTGFSTDVGVLEELAATYPIASDLLSYRTLQKLKGTYI 634 Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + ++ GR+ + + + TGR S QN+P Sbjct: 635 EALPKIINPRTGRIHTSFNQH-ITATGRLSSSNPNLQNIP-------------------- 673 Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I S L+ AD + IE R+ A ++G++ I AF NGEDI+ Sbjct: 674 ----VRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIHT 729 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T F T +++S + R K + + Y + L++ Q V + Sbjct: 730 ATAQVIFGT--EEISSDMRRKAKEVNFGVLYG-----IQPFGLAKRLNIPQKEAKVIIET 782 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + Q + + ++ E L+G + R + + Sbjct: 783 YKAKYPQLFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNG---------TVQKAAER 833 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + + + Sbjct: 834 AAMNTPIQGTAADIIKCAMNLCYQQ----------------------------------- 858 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649 +QA +++L VHDE++ ET D+ ++ L Sbjct: 859 -----------MQASG-------------MASEMLLQVHDELLFETTDSEKEALTKLVEN 894 Query: 650 LMTKNPSWA--KGLPLKAEGYEAKRY 673 M + K +P++ + K + Sbjct: 895 AMKEAAVLCGMKQVPVEVDCGVGKNW 920 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 107/704 (15%), Positives = 196/704 (27%), Gaps = 156/704 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCA--YAWDDEPVKLWDRTE--QSAMPSD-----L 57 D ET +P A + + + + + D L Sbjct: 391 DTETSGLEP----------RDAALVGIGCCWGTEADASAYIPLAHTKGENLSQDIVLTAL 440 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-L 114 L N+ F+R++F GI++ + + +L + Sbjct: 441 RPILESADYPKTFQNAKFDRLVFL-VQGINLTGV-VFDPMLASYVLNPDTSHNLTDLTQR 498 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + K + YC V AT +L Sbjct: 499 YLGLTIQNYVDLVPKG------------------KTIADINISAVANYCCLQVYATFQLV 540 Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +L + E+ L + T+ G RID + +L + + + KL E Sbjct: 541 AKLREELAKTPNLDKLLREVEQPLESVLATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQ 600 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQL--AKD 276 +L + L LF G+ T + L + Sbjct: 601 ATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQEVDETGFVN 659 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 I S ++ L V D R+ A+ TGR S QN+P Sbjct: 660 AITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFNQT-ATSTGRLSSSNPNLQNIP---- 714 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 S +R + +G + AD + IE R+LA ++ E Sbjct: 715 --------------------IRTAFSRQIRKAFLPKSGWLMAAADYSQIELRILAHLSQE 754 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++A+ EDI+ T F D ++ ++R I K + + Y G+ F Sbjct: 755 PLLVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLKF-----SR 807 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + N E + + ++ ++ Q + ++G + Sbjct: 808 STGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRR------YFN--- 858 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + L+ + I L Sbjct: 859 ----------------------------FDSTSLLNLKGSNPEDIDL------------S 878 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDE 631 L + L+R +Q S DI+ M + ++L VHDE Sbjct: 879 KLKNLGAKDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQARLLLQVHDE 932 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 +V E P + + + S+M +PL + + + Sbjct: 933 LVFEVPPQEWAELQPQIKSVMENAVK--LSVPLVVDVRAGENWM 974 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GI++ R+ T + + + L + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T ++ F ++ V+ + R K + G+ Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L + Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ + M ++L VHDE+V E + Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 188/701 (26%), Gaps = 158/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS--AMPSDL 57 ++ ID ET S P A + + AW + + +P D+ Sbjct: 316 RVAIDTETSSLDP----------HAAELVGFSLAWFEGDRTRAVYVPLGHREGKQIPRDV 365 Query: 58 L-----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLK 110 +L D + +A N+ F+ +F G+ T + + L Sbjct: 366 ALALLGPWLEDGSKAKLAQNAKFDWQIF-WAQGLRPRGLA-RDTLLESYVLDSTAAHDLD 423 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L GK R+ Y D E Sbjct: 424 SLAERYLQHRNISYAELTGKG---------------RQARSFAAVDIASATAYAAEDAEV 468 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + ++ P D E L + + G RID+D++ +L E + Sbjct: 469 CLRVDAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELDTRMA 528 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 ++ + G + ++ LF G+ ++ + T + +L+ Sbjct: 529 TVESEAFAAA-GQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQPSTNEDVLAELAKQADL 587 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LIL+ + + L + + GR+ A TGR S QN+P Sbjct: 588 PRLILDYRGLAKLKNTYADALPQMIQERTGRVHTHYHQAVA-ATGRLSSSDPNLQNIP-- 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G L+ AD + IE R++A ++ Sbjct: 645 ----------------------VRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ +AFA G DI+ T A+ F P+++V+ EQR K + L Y Sbjct: 683 GDAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTP-----YGL 737 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + Q FE + + + + + L G L Sbjct: 738 AQQLGVGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYL-------- 789 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + A++ +L M + R L Sbjct: 790 -PEIRSQNPARRNYAERAAINAPMQGTA--ADLIKLAMIAVDAWLLAQTDHGRML----- 841 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 ++ Sbjct: 842 -----------------------------------------LQVHDE-----------LI 849 Query: 634 SETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ + L M A +PL + Sbjct: 850 LEVPEKAVDAACQMLREKMEGVAELA--VPLTVGLGVGANW 888 >gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] Length = 941 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 93/690 (13%), Positives = 192/690 (27%), Gaps = 135/690 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57 L ID ET S +P+ +A + +++ + E + ++ Sbjct: 369 KILSIDTETTSAEPM----------EAELVGMSFSDTENQAYYVPVPPEREEALKIVNEF 418 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E M V N ++ ++ + G+++ + T + L ++ Sbjct: 419 RPLYENENSMKVGQNIKYDILVLQNY-GVEVKGE-LFDTMLAHYVLQPELRHNMDYLAEI 476 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + D PP + + A + E ++ Sbjct: 477 YLHYQTIHIDELIGPKGKNQKNMR---DLPPEEVYKYACEDADITLKLKNVLEEELKKQG 533 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L + E L + + G RID + + + E ++++++I +L G Sbjct: 534 VEHLF--YEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKEIYELA-GETF 590 Query: 234 SSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF I T + +L IL Sbjct: 591 NIASPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVIGKILEYRGLKKLL 650 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L ++ GR+ + + TGR S QN+P Sbjct: 651 GTYVDALPLLINPRTGRIHTSFNQAV-TATGRLSSSNPNLQNIP---------------- 693 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I + + AD + IE R++A ++ + I AF +G D Sbjct: 694 --------IRDEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGYD 745 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T AK + I V+ + R K + Y +++ + Sbjct: 746 IHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYG-----ISIFGLAERMNVDRKEAKEL 800 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + Q + E + + L + + Sbjct: 801 IDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFL---------PDINSRNATVRGY 851 Query: 528 FAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + SA + V Sbjct: 852 AERNAINAPIQGSAADIIKV-----------------------------------AMARI 876 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R ++Y K + + + P+ V Sbjct: 877 YERFQSYKLKA--------------KMILQVHDE-----------LNFSVPEAEKEFVQQ 911 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + M + + +PL+A+ K + K Sbjct: 912 IVIEEMERA--YRMHVPLRADCGWGKNWLK 939 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 194/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 D ET S + QA + +++ ++ A+ Sbjct: 351 FAFDTETTSLNYM----------QAELVGMSFSIEEGDAAYLPLAHDYVDAPQQLDRSAV 400 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L D+ V + +++ + I++ + T + + + Sbjct: 401 LALFKPLLEDKNKAKVGQHLKYDKNVLANY-DINLQGIAY-DTMLESYVLNSVATRHDMD 458 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L S + GK + +Y D + Sbjct: 459 SLAQYYLGLSTVHFEDIAGKGAKQL---------------TFNQIPLDQAAQYAAEDADI 503 Query: 170 TRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L + + E L + + G ID + + + +A Sbjct: 504 TLRLHNHIWQKLHQTPELASVLTEIEVPLATVLAKMEQFGVLIDSQKLSQQSQDLATRIM 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLA 274 +L+ ++ +L + T L+ LF + + T + +L +T Sbjct: 564 QLEREVHELAGEEF-NLGSTKQLQEILFNKLSLPVLKKTPKGAPSTSEEVLQELALTYPL 622 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L++ S + L + ++ GR+ + + TGR S QN+P Sbjct: 623 PKLLMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYHQA-ITATGRLSSTEPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR IA G K+V AD + IE R++A ++ Sbjct: 680 ----------------------IRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ +KAF+ G+DI+ T A+ FN + +V+ EQR K + L Y Sbjct: 718 QDEGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMS-----AFGL 772 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L++ + FE + + + E + G L Sbjct: 773 SKQLNVSRHDAQHYMDLYFERYPGVLKYMEDSRIVAKENGYVSTVFGRRLYL-------- 824 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI-VLPSSRRLVYSD 572 + +G + K D I LPS + + Sbjct: 825 -PDINASNGLRRKGAERAAINAPMQGTAADI----IKKAMLKVDAWIDTLPSDQTRMIMQ 879 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 V + + + E N + IV Sbjct: 880 VHDELIFE-----------------------------IKEQ--NVENDKNTIV------- 901 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 LM K S +PL E + + Sbjct: 902 ----------------DLMEKAVS--LDVPLIVEAGVGENW 924 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 351 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 410 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GI++ R+ T + + + L + Sbjct: 411 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 469 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 470 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 514 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + E L + I +G +D +L+ + + L+ + + Sbjct: 515 IPTLQPVLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 574 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 575 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 633 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 634 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 677 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 678 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 728 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T ++ F ++ V+ + R K + G+ Sbjct: 729 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 766 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 767 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 804 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L + Sbjct: 805 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 838 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ + M ++L VHDE+V E + Sbjct: 839 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 889 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 890 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 921 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 100/695 (14%), Positives = 188/695 (27%), Gaps = 152/695 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDL 57 +L ID ET S + A A + A++W+ D T + L Sbjct: 354 RLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERL 403 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 LR V N ++ ++ + G+ +P + T V P +L Sbjct: 404 APILRRAQR-KVGQNLKYDLVVLARH-GVQVPP-PYFDTMVAHYLIAPEEPHNLDVLARQ 460 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + G + + G Y D + +L Sbjct: 461 YLRYQMVSITELIGSGRDQKSMRDVS---------------IDEVGPYACEDTDIALQLA 505 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + E L + + G ID ++ ++ + + E +L+ I Sbjct: 506 DVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKI 565 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + L LF G+ T +S+L LIL+ Sbjct: 566 YEVAGVEF-NIGSPQQLADVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILD 624 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ L + GR+ T + TGR S QN+P Sbjct: 625 WRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTV-TATGRLSSSNPNLQNIP-------- 675 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G KL+ AD IE R+LA ++G++ Sbjct: 676 ----------------VRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALR 719 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G+DI+ T A+ F P ++V+ EQR K++ + Y L Sbjct: 720 RAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYG-----ISAWGLAQRLRC 774 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + ++ + + L+G R + Sbjct: 775 STREAQELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGR---------RRYVPNINS 825 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + +L + Sbjct: 826 RNRAERSMAERIAVNMPIQGTQADMI---------------------KLAMVHIYHRLKR 864 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + + E+V E P Sbjct: 865 EGYR---------------------------AKMLLQVHD-----------ELVFEMPPE 886 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V L M + +G+P++ + + Sbjct: 887 EVEPVRQLVEQEMKQALPL-EGVPIEVDIGVGDNW 920 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 185/652 (28%), Gaps = 149/652 (22%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLP 106 ++ + + L +L + + + + ++R +F GI++ T + + P Sbjct: 13 DRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEADKP 70 Query: 107 SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 L + L S + GK + EY Sbjct: 71 HGLASLAERHLGRSGISFEDLCGKGANQ---------------ISFDQVDIAKAAEYACE 115 Query: 166 DVEATRELFKRLIPLSDGERDL----------WLLDQTINDRGYRIDLDLVLKLQELIAQ 215 D + T ++ L P + L I G ID + + Q Sbjct: 116 DSDQTLDVHLVLWPQIEANDKLKFIYELEIASSEALYRIERNGVLIDAPTLAAQSHELGQ 175 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT 271 +L+ + ++ + L F G+ +V + T + +L Sbjct: 176 RILQLETEAYEIAGQPF-NLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKLAED 234 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + L++ GR+ A TGR S QN+ Sbjct: 235 YPLPAKLLEHRSLAKLKGTYTDKLAQLALPRTGRVHTHYAQAVA-VTGRLSSNDPNLQNI 293 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P VR +A+ G + AD + IE R++A Sbjct: 294 P------------------------IRTAEGRRVREAFVAAPGCVIASADYSQIELRIMA 329 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 I+ + ++AF +G D++ T A+ F P+D+VS EQ Sbjct: 330 HISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQ---------------------- 367 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + L A + TA + + + Sbjct: 368 ----------------------RRYAKVINFGLIYGMSAFGLARNLGIDNTAAKNYIQRY 405 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 ++ GV + E RRL Sbjct: 406 FERYPGVKAYMESTRELAKRQGYVETVF--------------------------GRRLQL 439 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624 + +K + + L R +Q + D++ M + Sbjct: 440 AGIK---NAKGAQLAGLERAAINAP------MQGTAADLIKLSMVKVQQVLDAQNKSTKM 490 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ VHDE+V E P V + SLM +PL AE + K Sbjct: 491 IMQVHDELVFEVPQDEVDWVRTEIPSLMAGVAE--LKVPLLAEVGVGPNWDK 540 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 107/722 (14%), Positives = 184/722 (25%), Gaps = 187/722 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 + +D ET S + + A Sbjct: 356 RLVAVDTETTSLD----------CMLCDLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQ 405 Query: 52 ----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106 + L L D+ V+ V N ++ + + I T +++ Sbjct: 406 IGKAEALAALKPLLEDDAVLKVFQNGKYDLNVLARE---GIAVAPIDDTMIISFALDAGR 462 Query: 107 --------SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + L K G Sbjct: 463 SESGIGGGHGMDELAERHLGHPCISFKELCGTG---------------RKAIPFAEVPLD 507 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207 EY D + T L L E R L + + G ++D + Sbjct: 508 KATEYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLA 567 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKS 263 KL E A E K+L+ +I ++ L LF G T +S Sbjct: 568 KLSEEFATETKRLEGEIHEIAGQEFT-VGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQS 626 Query: 264 ILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321 +L + +L + + L EA++ GR+ + GA +TGR S Sbjct: 627 VLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSLVGA-QTGRLS 685 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R +A G L+ AD Sbjct: 686 STDPNLQNIP------------------------IRTEIGRQIRDAFVAEEGNVLLAADY 721 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+ A +A +AFA GEDI+ T + F +V+++ RA K + A+ Y Sbjct: 722 SQIELRLAAHMADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILY 777 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + Sbjct: 778 GISRWGLAG--------------------------------------------RLGVEAD 793 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + G+ + E Sbjct: 794 EAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLF----------------------- 830 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617 R+ + + + R +Q S DI+ M Sbjct: 831 ---GRKTWFPRINSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMVRMNSAL 878 Query: 618 TKNGY---DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAK 671 + G ++L VHDE+V E P+ + + +M P +PL E K Sbjct: 879 EEAGLGHVRMLLQVHDELVFELPEADVAAASAIIERVMAGAAQPYVELSVPLGVEIGTGK 938 Query: 672 RY 673 + Sbjct: 939 SW 940 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPEKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTAPRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPVLSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GI++ R+ T + + + L + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNEIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T ++ F ++ V+ + R K + G+ Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L + Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ + M ++L VHDE+V E + Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISGQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 101/691 (14%), Positives = 203/691 (29%), Gaps = 140/691 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + ID ET S P+ +A + ++ + + + Sbjct: 337 VSIDTETTSLNPM----------EAKLVGLSFCMELGQAAYIPLAHHYPGVPSQLNREQV 386 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 L +L + + + N ++R +F G+ + T + + L L + Sbjct: 387 LQRLKPWLESDEKLKIGQNLKYDRHVFANH-GVMLNGI-VHDTLLQSYVLESHLSHDLDS 444 Query: 112 AC-LALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L GK I + Y A+ Y + Sbjct: 445 LASRHLGIQTISYDEVTGKGAKRIGFEQVEIHRAGIYAAEDADIPLRLHRV-LYPVISQD 503 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 A E E L + I G +D DL+ + Q+ L++ L Sbjct: 504 AHLE-----YIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQQAHSLA 558 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLAS 284 + T ++ LF + ++ + T + +L ++L+ Sbjct: 559 GHAF-NLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEVLQRLASDYPLPKVLLDYRGL 617 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + ++ L + V+ GR+ A TGR + QN+P Sbjct: 618 AKLKSTYIDKLPQMVNKQTGRVHTHYAQAVA-VTGRLASNDPNLQNIP------------ 664 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA +G ++ AD + IE R++A I+G+ I AF+ Sbjct: 665 ------------VRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFS 712 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G+DI+ T A+ F P+++V+ EQR KV+ L Y L +++ + Sbjct: 713 EGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMS-----EFGLATQLGIERTA 767 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 F + + ++ + + ++G +L +++ Sbjct: 768 ARTFIDRYFARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQ------- 820 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + +A + + + + R L + ++ Sbjct: 821 -MGAERAAINAPMQGTAADIIKLAMISVH-------------RWLAEAQLQSKL------ 860 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 I+Q +VL E++ Sbjct: 861 -----------------IMQ-------------VHDE---LVL----EVLV----DELPV 879 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L LM +PLK + K + Sbjct: 880 IKENLPRLMENVLK--LDVPLKVQTGIGKNW 908 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 97/692 (14%), Positives = 189/692 (27%), Gaps = 154/692 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQ 59 D ET S P A + W + V + + L Sbjct: 364 DTETTSLDP----------RDAQLVGIGCCWSERDVAYLPLGHRQGSNLDWDLVKQSLQP 413 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 D N ++ +F+ I + ++ + + +L + L Sbjct: 414 IWEDPNRPKSLQNCKYDLSIFRAHS-IRLQGIQF-DPMLASYVLNPEASHNLADLAASYL 471 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR---EL 173 N + GKA + D P A+ + + + L Sbjct: 472 NLPTTSYEKLLGKA------ESLADLPIAKVAEYCGTDAYCAYRLVPILTEKLQQTDPRL 525 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + + E L + + + G RID + + + + + +E L++ G + Sbjct: 526 WNLFV---QVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQA-GEVF 581 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF +D+ + T S+L + IL + Sbjct: 582 NLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVLEKLEGDHPVIETILQYRTLAKLK 641 Query: 289 ILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L V D GR+ + + TGR S QN+P Sbjct: 642 STYVDALPALVRRDTGRVHTSFNQTV-TATGRLSSSNPNLQNIP---------------- 684 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R + G L AD + IE R+LA ++ E I+ F +GED Sbjct: 685 --------IRSEFSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECFRSGED 736 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ T F + + Sbjct: 737 VHTLTARLLF----------------------------------------------EKQE 750 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 TS + ++ + FA + + + + ++ GV + Sbjct: 751 VTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEFLRRFNERYAGVFAYLRATEAF 810 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR + ++ S L+ Q Sbjct: 811 VEKHGYVETLL--------------------------GRRRYFPNL----SQLSGHRKQA 840 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+V E + + Sbjct: 841 ELRA-----AVNAPIQGSASDIIKVAMVRLQEKLQNFRSRLLLQVHDELVFEVEPSEWQD 895 Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + M + +PL + ++ Sbjct: 896 LRPLIQREMEEAVP--LSIPLVVDIQIGHNWK 925 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 94/703 (13%), Positives = 184/703 (26%), Gaps = 164/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57 D ET L A I ++A++ + + + Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAFEKGKAYYVPTPDSREQALEIVNIF 406 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 L D + V N ++ +L + + + T + + Sbjct: 407 KPVLEDANIEKVGQNIKYDILLLSRY-DVKVKGT-LFDTMLAHYLIDPDTRHGMDVLAEN 464 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + G+ + +L EY D + T +L Sbjct: 465 YLGYIPVSITKLIGEKGKKQG--------------NMRDVEIELIKEYASEDADITLQLK 510 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ PL + E L + I G +ID+D++ + I ++ + L+ I Sbjct: 511 EKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASI 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 + + L LF + T + +L IL Sbjct: 571 YEKAGVKF-NIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDIL 629 Query: 280 NRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L ++ G + + A TGR S QN+P Sbjct: 630 DFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVA-ATGRLSSTNPNLQNIP------- 681 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 VR I ++ AD + IE R++A ++ + Sbjct: 682 -----------------IRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDAN 724 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF G DI+ T AK + +D+VS +QR Sbjct: 725 MLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNA------------------------- 759 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +A + + + + + + ++ G+ Sbjct: 760 -------------------KAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGI 800 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + RR D+ Sbjct: 801 RDYMAKAIASAKENG--------------------------FVETILKRRRYLRDINSAN 834 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631 T R +Q + D++ M + +++ VHDE Sbjct: 835 M---TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDE 885 Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +V + P TL M +P++ E + K + Sbjct: 886 LVFDVPLDEVEKFKTLIQNRMKTAIP--LQVPIEVEIGQGKNW 926 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 101/706 (14%), Positives = 196/706 (27%), Gaps = 158/706 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL----- 57 + +D ET S + A + + + DL Sbjct: 346 YVAVDTETTSLNEMR----------AELVGISLCVKAGQACYIPINHKEGANDDLFGSDK 395 Query: 58 ---------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L+D++++ + N ++ +F + + T +++ Sbjct: 396 LAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIFARC---GVDVAPIDDTMLMSYA 452 Query: 103 NGLP---SSLKNACLAL-NFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ I ++ Y A+ ++ Sbjct: 453 QNAGLHNHGMDTLSDRLLGHTPIPIKSLLGTGKSAITFDRVDVAEAVKYAAEDADITLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ T +++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQHLKPQLHVKGVTT--VYETL------ERPLVPVLAEMEMTGIKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+ +I +L G + L LF GI+ + T +L I Sbjct: 565 KMAGLEAEIHELA-GRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATGADVLEDLAIE 623 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L ++ GR+ + GA+ TGR + QN+ Sbjct: 624 HELPGRVLDWRQLSKLKSTYTDALQNHINAETGRVHTSYSIAGAN-TGRLASTDPNLQNI 682 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA GK LV D + IE R+LA Sbjct: 683 P------------------------IRSEEGRRIREAFIAEEGKVLVALDYSQIELRILA 718 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +A +AFA+G DI+ T ++ F+ P+D+++ + R K + + Y Sbjct: 719 HVADIPSLKQAFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYG-----ISG 773 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + +F FE + ++ E L G Sbjct: 774 FGLARNLRIPRFEAQGFIDRYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRKINT----- 828 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + +A V + M Sbjct: 829 ----PEIGAKGPQAGFAKRAAINAPIQGTAADVIRRAMVRMPDAI--------------- 869 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 D + + Sbjct: 870 ------------------------------------ADQPAKMLLQVHDE---------- 883 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E + + T +M P+ + L A+ E + + Sbjct: 884 -LLFEVENGAQEKLIETARDVMENAAMPAVKLDVTLTADAGEGQNW 928 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 97/718 (13%), Positives = 190/718 (26%), Gaps = 175/718 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 L D E S + + ++A Sbjct: 382 LAFDTEASSLSAMKC----------DLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKA 431 Query: 50 -----QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 +P D L L D+ V+ + N ++ ++ ++ GI + + T ++ Sbjct: 432 VEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAP--FDDTMLI 488 Query: 100 ARTNGLP-----SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + + L K G R Sbjct: 489 SYALDASASLAGHGMDELSERFLGHKPMSYKELCGSG---------------KGARPIAA 533 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDL 203 A Y D + T L++ L P ER L + + +RG ++D Sbjct: 534 CAIDKVTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDR 593 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---- 259 ++ +L AQ++ L+ +I ++ G + L LF G+ ++ Sbjct: 594 QILSRLSGRFAQKQAGLEAEIAEIA-GETFNPGSPKQLGEVLFGKLGLPGGKKTKSGQWS 652 Query: 260 TLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L I++ + +TL + + GR+ + ++ TG Sbjct: 653 TDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSMA-STTTG 711 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R+ +A G LV Sbjct: 712 RLSSSEPNLQNIP------------------------VRTEEGRAIRTAFVAPAGHSLVS 747 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA IA +AF G DI+ T ++ F P++ + E R K + Sbjct: 748 ADYSQIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFG 807 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + FE + + + E + L Sbjct: 808 IIYG-----ISAFGLANQLSIPRDEAGTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETL 862 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G + + + Sbjct: 863 FGRRVH---------YPDIRSPNASVRAFNERAAINAPIQGTAADI-------------- 899 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + A ++ G +R + Sbjct: 900 ---------------------IRRAMIRMEPALADAGL--------SAR-----MLLQVH 925 Query: 619 KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E D ++ + +M + P +P++ + A + Sbjct: 926 DE-----------LIFEVEDDQIDATLPVVRRVMEEAALPVVQLSVPIEVDAKAAANW 972 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 102/721 (14%), Positives = 181/721 (25%), Gaps = 177/721 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + +D ET + A +A + + A Sbjct: 449 IAVDTETDALD----------AAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDLFGDG 498 Query: 50 ---------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 L L D + V N ++ + + GID+ + Sbjct: 499 GAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAP--FD 555 Query: 95 CTSVLARTNGLP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +++ + L G Sbjct: 556 DTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTG---------------RNKVT 600 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYR 200 A Y D + T L++ + P E L + + G Sbjct: 601 FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA 660 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 ID +++ +L +Q +L+E+I + + + LF G+ + Sbjct: 661 IDRNMLSRLSGDFSQILARLEEEIQEDAGEKFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG 719 Query: 260 ---TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T ++L ILN S ++L E T A+ Sbjct: 720 QWATPATLLEELAQAGHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAAT 779 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A GKK Sbjct: 780 TTGRLSSSDPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKK 815 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA IA +AF G DI+ T + F P+D+++ + R K + Sbjct: 816 LISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTI 875 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + FE + + + E Sbjct: 876 NFGIIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKRSCREKGYV 930 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G C + + Sbjct: 931 TTLFGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTAADII---------- 971 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R + ++ ++ + Sbjct: 972 -----------RRAMTRMEDALGAEK-----------------------LAA----RMLL 993 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGL--PLKAEGYEAKR 672 DE+V E PD ++ + +M + P+ A L PL E A Sbjct: 994 QVH-----------DELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLVVEARAAGN 1042 Query: 673 Y 673 + Sbjct: 1043 W 1043 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 105/719 (14%), Positives = 187/719 (26%), Gaps = 184/719 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------- 49 + D ET + A + + A + Sbjct: 380 VAFDTETDALSSAT----------AGLCGVSLAIAPGEACYIPISHCEKADGLAFEAPAD 429 Query: 50 QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 +P + L L D V+ VA N+ ++ + + I T +++ Sbjct: 430 IEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVAPIEDTMLISYVLE 486 Query: 105 LP---SSLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L K G K I+ A Sbjct: 487 AGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHV-----------------ALPE 529 Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L+ L P ER + + + + G R+D + + Sbjct: 530 ATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRL 589 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSI 264 L + + + +L + + LF + G T + Sbjct: 590 LSNEFSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 648 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 L + ++L+ S L A++ GR+ + A+ TGR S Sbjct: 649 LESLALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALA-ATTTGRLSSS 707 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A+ G L+ AD + Sbjct: 708 DPNLQNIP------------------------VRTEEGRKIRKAFVAAPGHVLISADYSQ 743 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA I KAF G DI+ T ++ F+TPI+ + R K + Sbjct: 744 IELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN------- 796 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ A + + Sbjct: 797 -------FGIVYGIS------------------------------AFGLANQLGISQGEA 819 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 K + + G+ Sbjct: 820 GAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIF------------------------- 854 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATK 619 R++ D++ + R +Q + D++ M Sbjct: 855 -GRKINIPDIEAKSAAHRQFA---ERAAINAP------IQGAAADVMRRAMIRMPVALEA 904 Query: 620 NGY--DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 G ++L VHDE+V E P+ + +M K P+ A +PL E A + Sbjct: 905 AGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAVALSIPLTVEARAASNW 963 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 258 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 317 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 318 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 376 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 377 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 421 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 422 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 481 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 482 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 540 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 541 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 584 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 585 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 635 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 636 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 673 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 674 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 711 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 712 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 742 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 743 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 796 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M+ A +PL E + Sbjct: 797 VDQVSEQIRPHMSGAAELA--VPLLVEVGVGNNW 828 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 195/694 (28%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + ++ L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDSVLKTLKPLLEDPGKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+++ R K + G+ Sbjct: 725 DVHRATAAEVFGVELEGVTQDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGIGNNW 917 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 99/716 (13%), Positives = 188/716 (26%), Gaps = 180/716 (25%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------QS- 51 +D ET S A QA + + + Sbjct: 358 AVDTETDSLN----------ARQANMVGLSLSVAPGKACYVPFLHETIRDLLEEDSTGEA 407 Query: 52 --------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L L+D +V+ V N+ ++ +F + GI T +++ Sbjct: 408 FVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVF-RGAGIP-EITPIDDTMLISYAQ 465 Query: 104 GLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 + L + G A + Sbjct: 466 SAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKR---------------IPFAQVAIEAA 510 Query: 160 GEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L++ L P + ER L + + D G ++D + ++ Sbjct: 511 TAYAAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRM 570 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 A+ ++++I + G + L LF G+ ++ T +L Sbjct: 571 SADFAERMGTIEQEIHEQV-GRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGVL 629 Query: 266 SHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 IL + + L + + D + T + TGR S Sbjct: 630 ESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSNE 689 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R +A+ G L+ AD + I Sbjct: 690 PNLQNIP------------------------IRTEEGARIRKAFVATPGCVLLSADYSQI 725 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA +A + ++AF G+DI+ T ++ F P++ + R K + Sbjct: 726 ELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINF------- 778 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ A + ++ Sbjct: 779 -------GIIYGIS------------------------------AFGLAQQLQISPGEAR 801 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 A+ A++ G+ + E P Sbjct: 802 SYIDAYFARYPGIRAYMERTKEEAKKHGYVTT--------------------------PF 835 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RR + R+ Q + DI+ M + + Sbjct: 836 GRRCYVPGITEKNGARRAYA---ERQAINAPL------QGGAADIIKRAMVHLARRLPAT 886 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 +VL VHDE++ E + ++ M + L+ E + Sbjct: 887 GLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAAK--LDVALEVETGIGPSW 940 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKK-------TLGIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIGGDQAHGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPVNF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLSDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++LS +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRVHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELEGVTNDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VEQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 357 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GI++ R+ T + + + L + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPSLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T ++ F ++ V+ + R K + G+ Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L + Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ + M ++L VHDE+V E + Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 357 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GI++ R+ T + + + L + Sbjct: 407 FAINLLANCAIGGDQAQGIELQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QDIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPSLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T ++ F ++ V+ + R K + G+ Sbjct: 725 DVHRATASEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRT 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L + Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNPSLRNGAQR 834 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ + M ++L VHDE+V E + Sbjct: 835 M---------AINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 357 bits (915), Expect = 5e-96, Method: Composition-based stats. Identities = 104/702 (14%), Positives = 195/702 (27%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLL 58 ++ +D ET +PL +A + + + + S L Sbjct: 322 KEICLDTETTDLRPL----------EAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQLK 371 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-L 114 L + ++ HN ++ + + I + + + T + + SL + Sbjct: 372 PLLENPSIGFYGHNFKYDYHVLRNH-NISVANISF-DTILASYLLNSHKRQHSLDHLALE 429 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + + GK K YC DV+ T L Sbjct: 430 LFDKVKIAIQELIGKGKNQLNMKNVALDKIC---------------HYCCEDVDYTIRLK 474 Query: 175 KRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L+ + + L + + G ID + L + I QE L+++I Sbjct: 475 NILLSQLEERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNI 534 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNR 281 L G I + L LF GI T +L + +L Sbjct: 535 YALA-GEIFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEY 593 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +N+L V+ GR+ A TGR S QN+P Sbjct: 594 RTLEKLRSTYVNSLPLQVNAKTGRIHCNFNQSMA-ATGRLSCQDPNLQNIP--------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + AD + IE R+LA ++ + I Sbjct: 644 ---------------VRTEVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVLI 688 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 KAF + EDI+ T + F+ P+ +VS EQR K + L Sbjct: 689 KAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLI------------------- 729 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 Q A + + + + ++ V + Sbjct: 730 -------------------------YGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKE 764 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + R + +++ + Sbjct: 765 FLEACKQSARETGKAVTMY--------------------------GRERLLPEIRSQNAM 798 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633 + + +Q D++ M K ++L +HDE++ Sbjct: 799 IRATADRF---------AVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMILQIHDELI 849 Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 E P+ S+ L M + +PL + K ++ Sbjct: 850 FEVPNQELESISHLVKNTMENIIN--LKVPLIVNIHIGKNWK 889 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 93/703 (13%), Positives = 184/703 (26%), Gaps = 164/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDL 57 D ET L A I ++A + + + + Sbjct: 357 KSFCFDTETTGLDALV----------ADIVGLSFAIEKGKAYYVPTPDSREQALEIINIF 406 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 L D + + N ++ +L + + + T + + Sbjct: 407 KPILEDPAIQKIGQNIKYDILLLSRY-DVKVKG-ALFDTMLAHYLIDPDTRHGMDVLAEN 464 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + G+ + +L EY D + T +L Sbjct: 465 YLGYIPVSITKLIGEKGKKQG--------------NMRDVEIELIKEYASEDADITLQLK 510 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ PL + E L + I G +ID+D++ + I ++ + L+ I Sbjct: 511 EKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASI 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 + + L LF + T + +L IL Sbjct: 571 YEKAGVKF-NIASPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDIL 629 Query: 280 NRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L ++ + G + + A TGR S QN+P Sbjct: 630 DFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVA-ATGRLSSTNPNLQNIP------- 681 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 VR I ++ AD + IE R++A ++ + Sbjct: 682 -----------------IRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDAN 724 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF G DI+ T AK + +D+VS +QR Sbjct: 725 MLEAFQKGYDIHRATAAKVYGLELDEVSSDQRRNA------------------------- 759 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +A + + + + + + ++ G+ Sbjct: 760 -------------------KAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGI 800 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + RR D+ Sbjct: 801 RDYMSKAIASAKENG--------------------------FVETILKRRRYLRDINSAN 834 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631 T R +Q + D++ M + +++ VHDE Sbjct: 835 M---TVRGFAERNAINAP------IQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDE 885 Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +V + P TL M +P++ E + K + Sbjct: 886 LVFDVPLDEVEKFKTLIQNRMKTAIP--MQVPIEVEIGQGKNW 926 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPGKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F +D V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELDNVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 99/703 (14%), Positives = 199/703 (28%), Gaps = 164/703 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 + D ET L A + ++++ + D+ E A+ + Sbjct: 378 KSVCFDTETTDINAL----------HADLVGMSFSYKEREAYYVAVPKDKKEIQAIVDEF 427 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA 115 + +++ +AHN ++ + + G+ T + + Sbjct: 428 KPFFEHKSIEKIAHNMKYDIQVLHRY-GVQFAG-PLFDTMIAHYLIQPESKQGMDFLAEY 485 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN++ + GK + + +Y D + T +L Sbjct: 486 YLNYTPVSIETLIGKKGKGQG--------------NMGDLQPEAISDYACEDADITFQLK 531 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + P + E L + + + G ID+ + + +A+E + L++ I Sbjct: 532 QLFAPQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLAEETEGLEKRI 591 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + L LF I T + IL IL Sbjct: 592 KELAGMDF-NVDSPKQLGDVLFEHMKISSKAKKTKTGQYATSEDILQQHKNDHEIIPCIL 650 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L DGR+ + + TGR S QN+P Sbjct: 651 DYRQMKKLKSTYVDPLPTMKDPVDGRVHTSYMQTV-TATGRLSSNNPNLQNIP------- 702 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +L+ AD + IE R++A +A + Sbjct: 703 -----------------IRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALADDTN 745 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF + DI+ T AK F+ +D V+K+QR+ K + + Sbjct: 746 MIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGII----------------- 788 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + T + + ++ A++ + Sbjct: 789 ---------------------------YGQSAFGLSQNLGISRTEAKQIIDSYFAQYSTI 821 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR D+ Sbjct: 822 KTYMDNAVKDARENGYVETIMQ--------------------------RRRYLPDINSAN 855 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 + + + +Q + DI+ M K ++L VHDE Sbjct: 856 AVVRGFAERN---------AVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDE 906 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + + + L M +P++ E A + Sbjct: 907 LVFDVHNDEQEVMKKLVKEAMENAIQLV--VPMEVEMELANNW 947 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 107/720 (14%), Positives = 203/720 (28%), Gaps = 165/720 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPS 55 + +D ET + +P+ A + ++A + + Sbjct: 379 IAVDTETTAIRPMR----------ADLVGLSFAVEPGSGWYVPVRSPEPETHLDEATVLG 428 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-------KRW--ICTSVLARTNG-- 104 L L D T + HN ++ ++ ++ G+++ W + + + Sbjct: 429 ALRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIASYLVDAS 487 Query: 105 -LPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 S+ +AL G + Y Sbjct: 488 RSSHSMDALAMALLERRNIPISELIGTGKKQ---------------KTFDTVPLDRATPY 532 Query: 163 CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T +L +RL+P E L + + G R+D D + + + Sbjct: 533 AAEDADVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGR 592 Query: 213 IAQERKKLDEDIVKLTDGII---RSSRQTYALRMYLFLI--------------TGIDLVD 255 I K L I G + + L LF G Sbjct: 593 IEGRVKDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGKTGPS 652 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314 L+ + +++ DLIL + L L E + R+ + A Sbjct: 653 TDAEVLEKLSQDASVKTPIPDLILEYRQLTKLVNTYLVNLVEEIDPRTKRIHASFNQTVA 712 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P +R +A G Sbjct: 713 -ATGRLSSSDPNLQNIP------------------------IRTELGREIRKAFVAEPGH 747 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++ + I+AF G+DI+ A+ + P+ +VS+EQR K+ Sbjct: 748 LLVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKM 807 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L + + + Q Sbjct: 808 VNFGIVYG-----VTAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGY 862 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + ++ + R ++ + E +I++ + L+ Sbjct: 863 VETMMKRRRPIPDIDSRDQN--------------RRALAERMAINSVVQGSAADLI---- 904 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 ++ D+ R + I Sbjct: 905 ------------KIAMVDLH---------RRLSPRAAAWREGAGPEI------------- 930 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 G ++L +HDE+V E P +V + + M A +PL A+ + + Sbjct: 931 -----EGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAM--ALDVPLVADASVSGDW 983 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G+Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 193/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G+Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 101/703 (14%), Positives = 195/703 (27%), Gaps = 170/703 (24%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDET 65 + G A++A + ++A T + + L L D Sbjct: 340 IQSNGTD--AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPD 397 Query: 66 VMCVAHNSLFERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CL 114 V ++ F L GID+ R+ T + + + Sbjct: 398 KTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAK 456 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + GK A + G+Y + + T L Sbjct: 457 YLTHTPINFQEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLH 501 Query: 175 KRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + D E L + I +G +D +L+ + + L+ + Sbjct: 502 EVFEARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALERE 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLI 278 + + L + L+ G+ ++ + T +++L+ ++ Sbjct: 562 AFAIAGEEF-NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVL 620 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + S + L E ++ GR+ + A TGR S QN+P Sbjct: 621 MQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP------ 673 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G KL+ AD + IE R++A +A ++ Sbjct: 674 ------------------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AF N D++ T A+ F ++ V+ + R K + G+ Sbjct: 716 LLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGM 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A + + + + A++ GV Sbjct: 762 S------------------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGV 791 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 L + A + RRL D+ Sbjct: 792 LDYMERTRAQAAEQG--------------------------FVETIFGRRLYLPDINAKN 825 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDE 631 L R +Q + DI+ + M ++L VHDE Sbjct: 826 QSLR---KGAERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDE 876 Query: 632 IVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E + + + M+ A +PL E + Sbjct: 877 LVLEVREDLVDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 194/696 (27%), Gaps = 153/696 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET L A + +++++ E + Sbjct: 376 VCFDTETTGIDAL----------NAQLVGMSFSFEKGKAFYVPFPENQEDAQVLADKFKP 425 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + E++ + N ++ + G+ I K T + ++ L Sbjct: 426 FFESESIEKIGQNIKYDLKILS-HYGVQIKGK-LFDTMIAHYLINPDMRHNMDVLSETYL 483 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +S + GK + ++ + + EY D + T +L + Sbjct: 484 KYSPKSIEDLIGKKGKNQ--------------KSMRDVSLEEIKEYAAEDADITYQLKQN 529 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P+ D E L + + G +D+ + + +A E L++ I + Sbjct: 530 FSPILDKAETKKLFEEIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYE 589 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILN 280 + L LF I T + ILS+ IL Sbjct: 590 TAGEKF-NLASPKQLGDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDILE 648 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L V GR+ A TGR S QN+P Sbjct: 649 WRQMVKLQSTYIDALPNQVDKKTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------- 699 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I L+ AD + IE R++A ++GE+ Sbjct: 700 ----------------VRTERGRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEENM 743 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I AF N +DI+ +T AK FN ++ V+KEQR+ K + + Y Sbjct: 744 IAAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVS-----AFGLSNQTS 798 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 L + + + + + +S+ D E ++G R + + Sbjct: 799 LSRKESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGR---------RRYLKDIN 849 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + G + ++ ++ + Sbjct: 850 SANMMVKSGAERNAVNAPIQGSAADII---------------------KIAMINIHKKLT 888 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N + ++L VHDE+V + + Sbjct: 889 QENWQSK--------------------------------------MLLQVHDELVFDVHN 910 Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + + + M +PL E K + Sbjct: 911 SELEKIQPMIKYEMENAFK--IDVPLDVEIGIGKNW 944 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 109/723 (15%), Positives = 190/723 (26%), Gaps = 190/723 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 + ID ET + + A + + A Sbjct: 358 RVVAIDTETSALDAMR----------ADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQ 407 Query: 52 ----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106 + L L + V+ V N ++ + + I T V++ Sbjct: 408 VDRAEALAALKPLLESDAVLKVGQNIKYDLNILARQ---GIMVSPIDDTMVMSFCLDAGR 464 Query: 107 -------SSLKNACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L + K GK I+ D+ Sbjct: 465 SETGLAGHGMDELSERHLLHTTMKFKELCGTGKKAISFAEVPLADAT------------- 511 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLV 206 Y D + T L + P GE R L + + G ++D + + Sbjct: 512 ----RYAAEDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERL 567 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLK 262 L A + +L+ I + G+ + L LF G T + Sbjct: 568 SGLSTEFAAQIARLEGVIHEKC-GMSFTIGSPKQLGEVLFDKLGYKGGKKGKTGQYSTDQ 626 Query: 263 SILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 S+L + L+L S + L A++ GR+ + GA +TGR Sbjct: 627 SVLEGLAAQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYSLVGA-QTGRL 685 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R +A G L+ AD Sbjct: 686 SSNEPNLQNIP------------------------IRTEIGRQIRDAFVAEPGNVLLAAD 721 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+ A +A +AFA GEDI+ T + F T V ++ R K + A+ Sbjct: 722 YSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAIL 777 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ + + Sbjct: 778 --------------YGISRW------------------------------GLGGRLGVSA 793 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + + G+ + + E Sbjct: 794 DEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLF---------------------- 831 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616 R+ + + + R +Q S DI+ M Sbjct: 832 ----GRKTWFPRISSKNQAERQGS---ERAAINAP------IQGTSADIIKRAMARMMPA 878 Query: 617 ATKNGY---DIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWA--KGLPLKAEGYEA 670 T+ G ++L VHDE+V E P + + +M A +PL E Sbjct: 879 LTEAGLGHVRMLLQVHDELVFELPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVEIGTG 938 Query: 671 KRY 673 + Sbjct: 939 LSW 941 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 97/699 (13%), Positives = 183/699 (26%), Gaps = 156/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 321 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIV 370 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D VAHN F+ + K G+ I + T ++A + + Sbjct: 371 LDILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDS 428 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L G + +Y D + T Sbjct: 429 LSKEHLGIEPIAYTTLAGTGRNQL---------------TLDQIDIEKVAKYAAEDADIT 473 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L+ + + E L ++ + G +ID +++ + K+ Sbjct: 474 FRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKE 533 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L+ L + LR LF G+ V + T + +L Sbjct: 534 LEIKCYDLAGQEF-NLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIA 592 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 LI+ S + L + + +GR+ + G + TGR S QN+P Sbjct: 593 ALIMKYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP---- 647 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A +V AD + IE R++A ++ + Sbjct: 648 --------------------IKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKD 687 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +KAF G DI+ T A+ +D V+ EQR K + L Y Sbjct: 688 KNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMS-----AFGLAK 742 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L++ + F + + + ++ + + ++G L Sbjct: 743 QLEIPRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------P 793 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +K Sbjct: 794 DISSKNVIQRNAAERAAINAPMQGTAADI----------------------------IKK 825 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +NT + D + M VHDE+V E Sbjct: 826 AMIDVNTMILREYN------------------DDIKMVM------------QVHDELVFE 855 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + S+M + +PL+ + + Sbjct: 856 VRKAKLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 99/691 (14%), Positives = 189/691 (27%), Gaps = 168/691 (24%) Query: 28 AVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSLFER 77 A + ++A T + + L L D V ++ F Sbjct: 350 AQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAKFAI 409 Query: 78 ILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLTKME 126 L GID+ R+ T + + + L + + Sbjct: 410 NLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEI 468 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----- 181 GK A + G Y + + T L + Sbjct: 469 AGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPT 513 Query: 182 ------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 D E L + I +G +D +L+ + + L+ + + + Sbjct: 514 LQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NL 572 Query: 236 RQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290 L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 573 GSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKST 632 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L E ++ GR+ + A TGR S QN+P Sbjct: 633 YTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP------------------ 673 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ Sbjct: 674 ------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVH 727 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T A+ F ++ V+ + R K + G+ Sbjct: 728 RATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS----------- 762 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A + + + + A++ GVL + A Sbjct: 763 -------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RRL D+ L R Sbjct: 804 EQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KGAER 834 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ + M ++L VHDE+V E + Sbjct: 835 MAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQ 888 Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 889 ISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 138/456 (30%), Positives = 220/456 (48%), Gaps = 21/456 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELF 174 GK L+ F CK + + + WQ F +Y +RDVE E+ Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ E + + +DQ INDRG RID LV + + + +LT + Sbjct: 179 QKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI +S+ ++ +L + T ++ R S S++ K Sbjct: 237 ANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVKQGNVPA 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S VAD + +EARV+AW++ E W+ ++FA EDI Sbjct: 354 LAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI 413 Query: 409 YVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQ 442 Y + ++ F P ++ E R GK+ ELALGY Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 195/706 (27%), Gaps = 164/706 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--- 57 D+ET S + A I + D + P L Sbjct: 339 RSFVFDLETTSLDYM----------NAAIVGWVFLVDKDS-FYVPVGHDYLDAPKQLDFD 387 Query: 58 ------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 L+DE++ V N ++ + ID+ T V + + Sbjct: 388 DALLTLKPILQDESINKVGQNLKYDAHVLANYQ-IDLNGIS-DDTMVKSYVLNSVATRHN 445 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN GK + + Y DV Sbjct: 446 MDDLSMHYLNHQTIHFSDVAGKGKKQ---------------ITFNQVGLEAAFPYACEDV 490 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 T EL K L E L + + G ID L+ Q + ++ Sbjct: 491 IVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQ 550 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNI 270 ++ +L G + ++ LF G+ + T + L + Sbjct: 551 MNEIQSQAFELA-GDAFNLESPKQIQQILFSEEGLGLEAKKKTPKGAPSTNEEALKLLDH 609 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 DLIL+ + L L + + + + T + TGR S QN+ Sbjct: 610 P--LVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLSSSNPNLQNI 667 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G ++ AD + IE R++A Sbjct: 668 P------------------------IRTELGARIRGAFIAGKGNVIIAADYSQIELRIMA 703 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 I+ + I+AF N D++ T + FN PI++V+K+ R K + L Y Sbjct: 704 HISQDKSLIEAFNNDVDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMS-----A 758 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 +++ + + FE++ ++ +++ + ++G L Sbjct: 759 FGLAKQINVSRTEAKQYIDAYFENYPGVLNYMDNIREAAKVQGYVETIMGRRLYL----- 813 Query: 511 RAKHQGVLQLWKDLTEGF-ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + K L + + S+ + L + D + Sbjct: 814 ----PQINAKNKMLQQHALRTAINAPMQGSSADIIKKAMLDVHEWIGDGN---------- 859 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 D + M VH Sbjct: 860 --------------------------------------DEIKMIM------------QVH 869 Query: 630 DEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 DE+V E + + LM + +PL + ++ Sbjct: 870 DELVFEVNASKADEFANKIQELMANA--YQLDIPLVVDVGIGDSWQ 913 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 193/689 (28%), Gaps = 133/689 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55 +D+ET S P+ A I + + + + + + Sbjct: 318 YFVLDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALN 367 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 +L L +++ + N ++ + K GI+ P + T + A +L Sbjct: 368 NLKSILENQSAKIIGQNLKYDYSVLKMH-GIE-PVRPSFDTMIAAYLLNPDEKRFNLDEL 425 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN+ + D D T+ + A Y +++ Sbjct: 426 AMKFLNYKMISFEELFKDTSPLFGAVTFADVSVEDATKYSAEDADITRRLYEILNIKLHE 485 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L E L + + G +++D + L A +L + I G Sbjct: 486 A--DLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQIYNHA-GE 542 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I + T +L + LIL Sbjct: 543 AFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRADVLEELSEEHPIVRLILEYRKYQKI 602 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L+ L + V GR+ + G + TGR S QNLP Sbjct: 603 KSTYLDVLPKLVHPETGRIHSSFHQTG-TATGRLSSSDPNLQNLPS-------------- 647 Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R ++ + K++ AD + IE RVLA ++ + I+AF Sbjct: 648 ----------KQEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFKKD 697 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T ++ F P ++V+ + R+IGK++ ++ Y L Sbjct: 698 EDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSP-----YGLSQRTGLSYDQAQ 752 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 F + + + + + G R + + + Sbjct: 753 KFIGEYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGR---------RREVPQLRSKNASVR 803 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + + +L ++ + Sbjct: 804 QEGERIAINTPIQGTAADI---------------------MKLAMINLYDKIKQMR---- 838 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 ++L VHDE+V E PD V Sbjct: 839 ----------------------------------LQSKMILQVHDELVFEVPDEEVEIVK 864 Query: 646 TLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L M +PLK + + + Sbjct: 865 NLVRDSMENVVR--LSVPLKVDLKISDSW 891 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 110/702 (15%), Positives = 194/702 (27%), Gaps = 155/702 (22%) Query: 1 MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TE 49 M +++ID+ET S A +A I A A + Sbjct: 353 MKDCEEIYIDLETTSVT----------AMEADIVGWAVAAKPGEAFYIPVRGPAGQQTMD 402 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + L + + N ++ +++K+ GI++ V Sbjct: 403 NQEVLDIFRPLLENPRIAISNQNIKYDLLVWKRH-GIELQKIGM-DPMVGHYLLDAGARS 460 Query: 107 SSLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 L + L GK Y A+ Sbjct: 461 HGLSSLADEFLKHRMIPISELIGTGKNQKRMDEIDIDQVAEYASEDADAALQIADI---- 516 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 RD +EL+ D ER L + + G R+D + + + EL+ + ++L E+ Sbjct: 517 IRDKLHEQELWNL---YQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVEELLEE 573 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILN 280 + + D + LR LF G+ T +S+L I+ Sbjct: 574 LEGMADRPF-NPDSPKQLREVLFDEIGLPVQKRTKTGPSTDQSVLEKLAPLHPLPAKIIE 632 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L++L + ++ GR+ + A TGR S QN+P Sbjct: 633 YRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVA-ATGRLSSSDPNLQNIP-------- 683 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR I G +L+ D + IE RVLA +G+ Sbjct: 684 ----------------IRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAAL 727 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 +AF +G+DI+ A+ F V + R + K + G Sbjct: 728 QEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVN--------------FGVIYGQS 773 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + + ++ GV Sbjct: 774 PYGLAAA------------------------------LNIPQEQAAEFIDDYFMRYPGVS 803 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 Q ++ E A + RR I R Sbjct: 804 QFIEETLEQCARSGYAYTMLGRRRPITG-------------IKNTGGRNRNMP------- 843 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 R ++Q + D++ M N + ++L +HDE+ Sbjct: 844 ---------ERTAI------NTVIQGSAADLIKLAMLNVHRELATSGLSARMLLQIHDEL 888 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V ETP + L M +PL + + + Sbjct: 889 VFETPVEELEPLRELVHREMVNAHP--LSVPLVVDMKHGENW 928 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 183/699 (26%), Gaps = 156/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S +A + ++ + + + Sbjct: 321 FAFDTETDSLN----------TYEANLVGLSFCAKEGRAYYIPLQHRYLGVPQQLELEIV 370 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 L D VAHN F+ + K G+ I + T ++A + + Sbjct: 371 LDSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHDMDS 428 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L G + +Y D + T Sbjct: 429 LSKEHLGIEPIAYTTLAGTGRNQL---------------TLDQIDIEKVAKYAAEDADIT 473 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L+ + + E L ++ + G +ID +++ + K+ Sbjct: 474 FRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKE 533 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L+ L + LR LF G+ V + T + +L Sbjct: 534 LEIKCYDLAGQEF-NLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQLAEEYEIA 592 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 LI+ S + L + + +GR+ + G + TGR S QN+P Sbjct: 593 ALIMKYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP---- 647 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA +V AD + IE R++A ++ + Sbjct: 648 --------------------IKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKD 687 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +KAF G DI+ T A+ +D V+ EQR K + L Y Sbjct: 688 KNLLKAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMS-----AFGLAK 742 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L++ + F + + + ++ + + ++G L Sbjct: 743 QLEIPRGEAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYL---------P 793 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +K Sbjct: 794 DISSKNVIQRNAAERAAINAPMQGTAADI----------------------------IKK 825 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +NT Q D + M VHDE+V E Sbjct: 826 AMIDVNTMILQEYN------------------DDIKMVM------------QVHDELVFE 855 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + S+M + +PL+ + + Sbjct: 856 VRKAKLNEITTKIKSIMETSVK--LDVPLEVNVDSGESW 892 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 107/688 (15%), Positives = 207/688 (30%), Gaps = 138/688 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 L +D ET S QA + + + + + L Sbjct: 375 LAVDTETTSLDTF----------QAELVGISLSIKPKQAWFVYFGKGGVDRRVALDMLKP 424 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116 L + ++ N ++ ++ KK GIDI + T + + +L + L Sbjct: 425 VLENPSLRKTGQNLKYDLLVLKKY-GIDINPVAF-DTMLASYVLDPEAKHNLDDLALRHL 482 Query: 117 NFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATREL 173 + GK ++ + Y C A+ ++ ++F E ++ + Sbjct: 483 SIKTTTYDELVADGKKKMSILDVPPGELSDYACQDADLALRLQEVFKEKLLQEKDL---- 538 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 L + E L + T+ G ID D + K + ++++ +L E I + + G + Sbjct: 539 ---LWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFEAS-GRVF 594 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF I G+ ++ T +L +L + Sbjct: 595 NLDSPKQLAHILFDILGLPSGKATKTGFSTNVQVLEDLAPIHPVAQDLLEYRSLQKLRNT 654 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + ++ G+L + + + TGR S QN+P Sbjct: 655 YIEALPKMINPLTGKLHTSFNQHV-TATGRLSSSHPNLQNIP------------------ 695 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 L +R I S L+ AD + IE RV A I+G++ ++AF N EDI Sbjct: 696 ------IRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEAFRNREDI 749 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T FNT +++ E R K + + Y L++ + Sbjct: 750 HSATARTIFNTT--EITPEMRRKAKEVNFGVLYG-----IMPFGLSRRLNISRNEAKNII 802 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + E + + + E L+G R + K++ + Sbjct: 803 DTYTEKYPGIFNALQQIISDGKERGYVSTLLGR---------RRYIPDLNSRNKNMQKAA 853 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + + + +H Sbjct: 854 ERAAMNTPIQGTAADIIKCAMNLCSTQLRLHK---------------------------- 885 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 + M L VHDE++ ETP+ + TL Sbjct: 886 ---------------------MKSVML----------LQVHDELLFETPENEKHRLKTLV 914 Query: 649 -SLMTKNPSWAK--GLPLKAEGYEAKRY 673 +M +P++ + K + Sbjct: 915 EEVMIDAAKRCGLHNVPVEVDTGIGKNW 942 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 194/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D + V ++ Sbjct: 248 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAK 307 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 308 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 366 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 367 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 411 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 412 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 471 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 472 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 530 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 531 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 574 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 575 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 625 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 626 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 663 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 664 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRA 701 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 702 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 732 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 733 AERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL 786 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 787 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 818 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 100/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLHDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKTQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 103/685 (15%), Positives = 189/685 (27%), Gaps = 132/685 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET PL A + A++W+ E + L Sbjct: 382 VCFDTETTGLNPLT----------AELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRC 431 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + E + + N ++ + K +++ T + ++ L Sbjct: 432 FFEAENIQKIGQNLKYDIKVLAKY-NVEVKG-PLFDTMLAHYLINPDMRHNMDVLAETYL 489 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N++ GK + D P T A + E ++ Sbjct: 490 NYTPVSITELIGKKGKNQLSM--RDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQK 547 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L D E L + + G +D D + L + ++ + L I + + Sbjct: 548 LFD--DIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVAGEEF-NIA 604 Query: 237 QTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF + D ++ T + ILS IL + Sbjct: 605 SPKQLGIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEIIRNILEYRGLAKLKSTY 664 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L V GR+ A TGR S QN+P Sbjct: 665 VDALPLQVEESTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------- 704 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 VR I + L+ AD + IE R++A ++ E+ I+AF NGEDI+ Sbjct: 705 -----IRTERGRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKNGEDIH 759 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 +T +K F PI++V++ QR+ K + + Y DL + Sbjct: 760 ASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVS-----AFGLSNQTDLSRGEAKELID 814 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +E + + + + + ++ L R + Sbjct: 815 TYYETYPKLKKYMSEQVHFARDNGYVKTILDRRRYLKDINSRNAV---------VRGAAE 865 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + ++ ++ N T Sbjct: 866 RNAVNAPIQGSAADII---------------------KIAMINIYNKLEAGNYKTK---- 900 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V + + TL Sbjct: 901 ----------------------------------MLLQVHDELVFDVYKPELEKMTTLIK 926 Query: 650 L-MTKNPSWAKGLPLKAEGYEAKRY 673 M +PL E + Sbjct: 927 TEMENAFK--MEVPLDVEVDTGLNW 949 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 192/694 (27%), Gaps = 168/694 (24%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G+Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVG-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + G+ Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINF--------------GLIYGMS-------- 762 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + + A++ GVL + Sbjct: 763 ----------------------AFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A + RRL D+ L Sbjct: 801 QAAEQG--------------------------FVETIFGRRLYLPDINAKNQSLR---KG 831 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M ++L VHDE+V E + Sbjct: 832 AERMAINAP------MQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL 885 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M+ A +PL E + Sbjct: 886 VDQISEQIRPHMSGAAELA--VPLLVEVGVGNNW 917 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 102/696 (14%), Positives = 185/696 (26%), Gaps = 173/696 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 ++ D ET A A I ++A+ E A+ + Sbjct: 362 EICFDTETT----------DIDALDAQIVGLSFAYRPREAFYIPFSPKFEEAKAVLIEFK 411 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 +E + VA N ++ + G+++ + T + + Sbjct: 412 PLFENENIRKVAQNIKYDLTILATY-GVEVKGE-IYDTMLAHYILEPDQRHGMDYLAETY 469 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ GK + + EY D + T +L Sbjct: 470 LSYKPIPISDLIGKGKKQLNMRDV---------------PLEQIKEYAAEDADITLQLKH 514 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E L + + G +ID++ + L + ++ K EDI Sbjct: 515 VLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIF 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280 +L + L LF I T + IL + IL+ Sbjct: 575 QLAGMEF-NVGSPKQLGEILFEHMKIDEKPKKTPTGQYATGEDILVNYEADHEIVRKILD 633 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++ L +S GR+ T A TGR S QN+P Sbjct: 634 FRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVA-ATGRLSSTNPNLQNIP-------- 684 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I ++ AD + IE R++A +G++ Sbjct: 685 ----------------IRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESM 728 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++AF NG DI+ T +K F +++V+ + R G+ Sbjct: 729 LEAFDNGMDIHAATASKVFGVSLEEVNSDMRRKA--------------KMVNFGIIYGIS 774 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + + + A+ + V Sbjct: 775 ------------------------------AFGLAQRLGIPRGEAKNIIDAYFTQFPKVK 804 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 E + + RR D+ Sbjct: 805 SYMDQTIEKARELEYVETIL--------------------------GRRRYLRDINSRNQ 838 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632 T R +Q + D++ M ++L VHDE+ Sbjct: 839 ---TNRGFAERNAINAP------IQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDEL 889 Query: 633 VSETPDTPYFSVGTLCSL---MTKNPSWAKGLPLKA 665 V + + + + M LPLK Sbjct: 890 VFDAHHSEVEFLKE--KIDYYMVNA------LPLKV 917 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 110/701 (15%), Positives = 186/701 (26%), Gaps = 157/701 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + ID ET S A A + + A+ Sbjct: 353 TIGIDTETTSLD----------AMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQD 402 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLK 110 + L +L + + + N +++ +F I + + + + L L Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY-DIALNGIA-GDSMLASYIIESHLGHGLD 460 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + GK + A EY +D + Sbjct: 461 ELSERWLGLETITYESLCGKGAKQ---------------ISFADVAIGQATEYAAQDADF 505 Query: 170 TRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L D E + + + G +ID + + + E KL Sbjct: 506 ALRLEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKL 565 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE---GTLKSILSHSNITQLA 274 +++ + L+ L GI ++ T +++L Sbjct: 566 EQEAYAAAGQPF-NLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL 624 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +IL + + + L E +S DGR+ T A TGR + QN+P Sbjct: 625 PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA-ITGRLASNNPNLQNIP-- 681 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR A G +V AD + IE R++A ++ Sbjct: 682 ----------------------IRTAEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+ I AF NGED++ T A+ F + VS EQR K + L Y G Sbjct: 720 GDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMG-----QYGL 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S F + + ++Q + L G L Sbjct: 775 AKSLGIDNISAKNFIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYL-------- 826 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + G +++ + M R + L S Sbjct: 827 -PDIRNKNANARAGAERAAINAPMQGTA--SDLIKRAMIDVSRWLSYDLKS--------- 874 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 M +VL V Sbjct: 875 -------------------------------------KLIM-QVHDE---LVLEV----- 888 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ V L +M K +PL AE + Sbjct: 889 ---PEAELDLVKEKLPQIMAKVDEGMLNVPLVAEVGVGMNW 926 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 183/702 (26%), Gaps = 164/702 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + ++A + + + Sbjct: 343 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 393 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 495 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P + E + L+ + + G ID + IA L Sbjct: 496 QLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + L G + + F + + T + +L Sbjct: 556 EAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G ++V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 710 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 764 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + E + + G L Sbjct: 765 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWL---------P 815 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + A++ +L M + Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 857 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632 RD M +VL Sbjct: 858 -------------------------------RD--KLASRMIMQVHDE---LVL------ 875 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L +M +PL AE + Sbjct: 876 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 913 >gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259] gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259] Length = 907 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 113/706 (16%), Positives = 193/706 (27%), Gaps = 170/706 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDL----- 57 +D+E S PL Q + A+A + A P+ L Sbjct: 332 FALDVEASSASPL----------QCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAA 381 Query: 58 ----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 L + V N + R + GI + T + + P L + Sbjct: 382 FARIKPLLEERAAKIVGQNLKYARHVLANC-GIALGGAA-DDTLLQSYVLEAHQPHELAS 439 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK A + GEY + T Sbjct: 440 LANRHLGLATLACDELTGKG---------------AARIGFDQVAVERAGEYAAEQADVT 484 Query: 171 RELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + +L + E + + + G +D L+ + ++ + Sbjct: 485 LRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLE 544 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 L++ + + + LF G+ ++ + T + L + Sbjct: 545 LEQRAFQEAGQPF-NLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIA 603 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL+ + + L + V GRL + A TGR + QN+P Sbjct: 604 RAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATA-VTGRLASVEPNLQNIP--- 659 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G LV AD + IE R++A ++ Sbjct: 660 ---------------------ARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSD 698 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AFAN DI+ T A+ F P+D VS EQR I KV+ Sbjct: 699 DAGLLHAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVIN--------------FGLI 744 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + L +A + + ++ Sbjct: 745 YGMS------------------------------AFGLASQLNLERSAAQAWIDRYFTRY 774 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GV E RRL ++ Sbjct: 775 PGVANYMLRTRESARAQGYVETVF--------------------------GRRLYLPEIN 808 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTV 628 R +Q + D++ M + G ++L V Sbjct: 809 ARNPQRRQGA---ERAAINAP------MQGTAADLIKLAMIAVQRWIDSERLGTRLLLQV 859 Query: 629 HDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE++ E P+ V L S M A +PL+ + Sbjct: 860 HDELILEVPEHELERVRAELPSHMCDVA--ALKVPLRVGVGVGGNW 903 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 87/704 (12%), Positives = 181/704 (25%), Gaps = 166/704 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 D ET A + +++ + + + Sbjct: 355 KSFCFDTETTGTD----------ANCCELVGLSFSVEKGQAWYVPASADQKEAHALVQQF 404 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + + + N F+ ++ + + + T + + Sbjct: 405 KPVFENPAIGKIGQNLKFDILVLSWY-DVKVAGE-LFDTMLAHYLIDPETRHGMDVLSEN 462 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L ++ G K + + +Y D + T +L Sbjct: 463 YLGYTPVSITTLIGPKGKGQLNMRDVDP---------------KTVSDYAAEDADITLQL 507 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + P+ + E L + + G RID+ + I E + L+ Sbjct: 508 KEIFEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEAR 567 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLI 278 I + + L LF +D ++ T + +L I Sbjct: 568 IYEKAGVPF-NIASPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLMALANKSDIVQDI 626 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L ++ L + ++ GR+ + A TGR S QN+P Sbjct: 627 LEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQAVA-ATGRLSSNNPNLQNIP------ 679 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 VR IA + ++ AD + IE R++A I+ + Sbjct: 680 ------------------IRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDA 721 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + AFA G DI+ T AK + +++V+ QR Sbjct: 722 NMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNA------------------------ 757 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 +A + + + + + + + ++ G Sbjct: 758 --------------------KAVNFGIIYGQSAFGLSQSLGIPRREAADMIEQYFIQYPG 797 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + + RR D+ Sbjct: 798 IRDYMNNTIAFAKEHGYVETLLK--------------------------RRRYLRDINSA 831 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHD 630 + T R +Q + D++ M + + + VHD Sbjct: 832 NA---TVRGFAERNAINAP------IQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHD 882 Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E+V + P + + M +P+ E E + + Sbjct: 883 ELVFDVPRNEVAAFKEIIEARMKGALK--TEVPIVVEIGEGQNW 924 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 100/690 (14%), Positives = 192/690 (27%), Gaps = 141/690 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59 ID ET S QA + +++ + + + L Sbjct: 371 FAIDTETTSLDTF----------QAELAGISFSLKPKEARFIYFGKGGLDIGNTLERLKP 420 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116 L + + N ++ ++ K GI + + T + + +L + L Sbjct: 421 VLENPDIRKTGQNLKYDLLVLKNY-GISLTPVAF-DTMLASYVLDPEEKHNLDDLAARHL 478 Query: 117 NFSEHLTKME---EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + EGK S Y C A+ + + E Sbjct: 479 SIRTTTFDELTAGEGKKRTHILDVPSAQLSDYGCQDAD-----IALRLQEVFEAKL-LED 532 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L E L + + +G ID + K +L+ + L I Sbjct: 533 QRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHAAAGTPF- 591 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF G+ ++ T +L +L + Sbjct: 592 NLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVEVLEELAPLHPIIGDLLEYRSLQKLKTT 651 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GRL + + + TGR S QN+P Sbjct: 652 YIDALPKMINPGTGRLHTSFNQHV-TATGRLSSSNPNLQNIP------------------ 692 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R I S ++ AD + IE R+ A I+G++ I+AF N EDI Sbjct: 693 ------VRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIEAFRNREDI 746 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F D+++ + R K + + Y + L++ Q Sbjct: 747 HRATAKVIF--STDEITSDMRRKAKEVNFGVLYG-----IQPYGLSKRLNIPQSEAKAII 799 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + L + ++ L+G R + ++ + Sbjct: 800 ETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGR---------RRYIPDLNSRNGNIQKAA 850 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 +NT Sbjct: 851 GRA-----------------------------------------------AMNTPIQG-- 861 Query: 589 RERTYGGKLTENIV--QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 K N+ Q + + ++L VHDE++ ET + Sbjct: 862 -TAADIIKCAMNLCDRQ------IKK-----NNMNSVMLLQVHDELLFETTAEEKNRLSK 909 Query: 647 LCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673 L M + + K +P++ + K + Sbjct: 910 LVETAMIEAAVYCGLKKVPVEVDTGTGKNW 939 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 192/707 (27%), Gaps = 174/707 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 D ET S PL QA + + A Sbjct: 380 FFAFDTETTSLDPL----------QAKLVGFSLALQPGKAAYVPLEHFEGGGDLLGGGRI 429 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D+ V+ + N ++ ++ K+ GI I + T +L+ Sbjct: 430 VGQIETRKALTLLKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIR--CFDDTMLLSYALD 486 Query: 105 ---LPSSLKNACLA-LNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L ++ L K GK + + + Sbjct: 487 AGALTHNMDALSERWLGHKPIAYKDLTHNGKKITSF-----------------AQVDLKQ 529 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L++ L P +R L + + +RG +D ++L+ Sbjct: 530 ATLYAAEDADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLR 589 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSI 264 L +AQ L+E+I +L + L LF + T Sbjct: 590 LSGELAQAAFILEEEIYQLAGEKF-NLASPKQLGGILFGKMSLPGGTRTKSGQWSTSAQT 648 Query: 265 LSHS--NITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 L L + +I R + + L + S GR+ + TGR S Sbjct: 649 LEELAAEGHILPRKIIDWRQ-LAKLKSTYADALPSYILSKTGRIHTNYSLA-ITSTGRLS 706 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R+ IA G L+ AD Sbjct: 707 SSEPNLQNIP------------------------VRTTEGRKIRTAFIAPKGHMLLSADY 742 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA IA +AFA G+DI+ T ++ F I+ ++ + R K + + Y Sbjct: 743 SQIELRILAHIADIIALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIY 802 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L L + + FE + + + ++ + + G Sbjct: 803 G-----ISAFGLANQLGLSRQEASHYIQLYFERFPGIKDYMEMTKNFACRNGYVETIFGR 857 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + Sbjct: 858 RIH---------YPEIKAANLQVRSFNERAAINAPIQGSA-------------------- 888 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + L +E+ + + Sbjct: 889 -----------ADIIRRAMIQMENALEKEKLSA-----------------KMLLQVHD-- 918 Query: 622 YDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN--PSWAKGLPLKA 665 E++ E P+ ++ + +M P + +PL+ Sbjct: 919 ---------ELIFEVPEDESERTMALVKKVMENATMPVLSLSVPLEV 956 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 188/706 (26%), Gaps = 169/706 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMP 54 ID+ET S P A I + + D+ + + Sbjct: 324 IFAIDLETSSLDP----------HCAKIVGVSISIDEGSGYYIPIAHESDGWQADRDYVL 373 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111 +L + L D + + N F+ + GI P T + A + +L Sbjct: 374 KNLKKLLEDRSTKIIGQNLKFDYSVLA-VNGIH-PVVPDFDTMLAAYLLSPDAKRFNLDE 431 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + K + + Y D + + Sbjct: 432 LAMKFLGYKTIKFEDLMKKNQLG---------------DDFTKVPLEEAARYSVEDADIS 476 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L E L + + G D+ + L E + K+ Sbjct: 477 LRLSSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPSLKNLSEKYGKILDKI 536 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276 E++ LT G + + LF G+ ++ T L A Sbjct: 537 LEELFDLT-GEQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQ 595 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L+ L++L E V+ GR+ + G + TGR S QNLP Sbjct: 596 KLLDYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTG-TGTGRLSSSNPNMQNLP---- 650 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R C+I G K+V AD + IE R+LA ++ Sbjct: 651 --------------------IRDEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQ 690 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + AF N +D++ T + + +VS+EQR I + Sbjct: 691 DKQLLDAFKNDKDVHSLTASNLYGIKESEVSEEQRRI--------------GKMINFSII 736 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ + ++ E + + Sbjct: 737 YGISSYGLASR------------------------------LRIPTNVAEEMISNYFKAF 766 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 V +D + R+ K Sbjct: 767 PEVRAFIRDTISEAKEKC--------------------------FVRTMFGRKREIPQFK 800 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTV 628 + R +Q + DI+ M + +L V Sbjct: 801 TKN---RNVIQEGERIAI------NTPIQGTAADIMKMAMIKIYNLLKEKEMESFAILQV 851 Query: 629 HDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E P+ + + M++ +PL E + Sbjct: 852 HDEMVYEAPEKEIEKLKEILKEGMSEVVE--LSVPLDIEISVGDYW 895 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 353 bits (905), Expect = 7e-95, Method: Composition-based stats. Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 143/695 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55 +L ID ET S A Q + + + + + Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGKACYIPIGHKFKGCLKKETVIK 394 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L D++V + N F+ I+ K GI++ T +++ ++ Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKH-GINMN--SMEDTMLMSYVLDAGKNRHNMDTL 451 Query: 113 CL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K GK I + Y A+ + Y Sbjct: 452 SEIHLQHKTISFKEIVGTGKKEINFSDVELDKAMEYAAEDAD-----ITYRLYKIFSKNL 506 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E + + E+ L + + G +ID + L E ++ KL++++ K++ Sbjct: 507 KLEKLTNIYEI--FEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISK 564 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLAS 284 + L ++ I ++ + T S+L LIL+ Sbjct: 565 KKF-NIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQV 623 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 S + L E ++ + + T A+ TGR + QN+P Sbjct: 624 SKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIP------------- 670 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G L+ AD IE R+LA +A KAF+N Sbjct: 671 -----------IKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSN 719 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T ++ FN I KV ++ R K + + Y +++ Sbjct: 720 NEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYG-----ISQYGLAKQINVSNHEA 774 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + F + + + + + + G R+ G+ ++ Sbjct: 775 DEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR---------RSHFNGINDKNFNV 825 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + + Sbjct: 826 RNFQERAAINAPIQGSASEIM-------------------------------RLAMIRLN 854 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + + K+ +L +HDE++ E P ++ Sbjct: 855 KKFESIKNNKSKI---------------------------LLQIHDELIFEVPVKEVKNI 887 Query: 645 GTLCS-LMTKNPSWAKGL-----PLKAEGYEAKRY 673 + MT L PL + + Sbjct: 888 TEIIKDEMTSVTE--SDLHTFSTPLTVDVNTGDNW 920 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 102/697 (14%), Positives = 198/697 (28%), Gaps = 152/697 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--------EQSAMP 54 + +D+ET +P +A I A +W+ + + Sbjct: 319 EFCVDLETTGLKP----------AEAEIVGWAISWEKHRGFYIPVEGPSGQLALDPQYVL 368 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 L L D ++ N ++ ++ + +G+ + V + SL Sbjct: 369 EHLKPILEDPEILITNQNIKYDMVVLMR-VGVFLQGVSI-DPMVASYLISAGERGHSLDK 426 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEA 169 LN + G + + + AWQL + Sbjct: 427 LSERYLNHTMIPISELIGSGKQQKKMFEVDVDKVAEYAVEDAEIAWQLSRILQDELKHAG 486 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 EL+ L ER L + + G ++D + + +L+ + L +I ++ Sbjct: 487 LWELYWEL------ERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIAG 540 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + LR LF + + ++ T +S+L I S Sbjct: 541 HEF-NIASPLQLRTVLFEELNLPVFKKTKTGPSTDQSVLEKLAPLHALPARITEHRHLSK 599 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L+ L V+ GR+ + A TGR S QN+P Sbjct: 600 LKSTYLDALPGLVNPETGRIHASFNQVVA-ATGRLSSSDPNLQNIP-------------- 644 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I +L+ AD + IE R+LA ++ + +AF Sbjct: 645 ----------VRTQEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFRE 694 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G DI+ + F P D+V + R K + G S+ Sbjct: 695 GADIHTAVASDIFRVPHDQVDSDMRRTAKAVN--------------FGVIYGQSPFGLSE 740 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD- 523 + + + + + ++QGV + Sbjct: 741 AI------------------------------GIPQSEAAGFIEDYFVRYQGVREFLDQI 770 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 L + + R+ V+G Sbjct: 771 LEDCAKQK---------------------------FVETICGRKREIQGVRGGVQKQLNM 803 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 R ++Q + D++ + M N ++ +++ +HDE+V E P Sbjct: 804 ---PERTAI------NTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQIHDELVFEVP 854 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 T ++G + M +PL + + Sbjct: 855 LTALDTLGLIVREEMESAMD--LEVPLIVDMSSGLNW 889 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 185/700 (26%), Gaps = 158/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S P+ A + ++A + + Sbjct: 343 VAFDTETTSLDPM----------SARLVGMSFALAQGEAAYLPLAHRGTDVPQQLPLDEV 392 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKN 111 + L +L + + N ++ + GI + T + + P + + Sbjct: 393 LARLKPWLESDRHAKLGQNLKYDAHVLLNH-GIRLGGIT-HDTLLESYVLESDKPHDMDS 450 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK A Y D + T Sbjct: 451 LAKRHLGLTTIPYTEVCGKGAKQIG---------------FDEVALDCAAAYAAEDADVT 495 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + E + + G ID L+ + E + + Sbjct: 496 LRLHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLG 555 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAK 275 L+ + L + L LF + ++ + T + +L+ Sbjct: 556 LEAEAHVLAGQPF-NLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQLAEDYPLP 614 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L + + + L V+ GR+ A TGR + QN+P Sbjct: 615 KLLLEHRSLAKLKSTYADKLPRMVNPKTGRVHTCFSQATA-VTGRLASTDPNLQNIP--- 670 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R+ IA +V AD + IE R++A ++G Sbjct: 671 ---------------------IRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSG 709 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + ++AFA GED++ T A+ F +VS EQR KV+ L Y A Sbjct: 710 DARLLEAFAEGEDVHRATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAH-----GLA 764 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L +++ + F + + ++ + + + + G L Sbjct: 765 KNLGIERGAAQAWIDRYFARYPGVADYMERIKAEAKDKGYVETVFGRRLHL--------- 815 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + ++ Sbjct: 816 PDIRAQQAGRRQAAERAAINAPMQGTAADLIKKAMI------------------------ 851 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 A S +R +L +VL Sbjct: 852 --------AVSGWLRASGLKSRLV----------------LQVHDE---LVL-------- 876 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P ++ L LM A +PL E + Sbjct: 877 EVPVAEVETLRAALPGLMGGVA--ALSVPLLVEVGVGNNW 914 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 352 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 206/700 (29%), Gaps = 158/700 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 + D ET S + +A + A ++ + A+ + Sbjct: 370 EFCFDTETTSLVAI----------EAELVGLALSYYAGEAYYVPFPADKAQTQAILEEFR 419 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L E + + N ++ + KK I+I + + T + + S+ Sbjct: 420 GVLESENIKKIGQNLKYDITVLKKY-NIEIKGECF-DTMLASYLLDPDNRHSMDAMAEKY 477 Query: 116 LNFSEHLTKMEEGKA------LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN+S GK Y A+ EY V A Sbjct: 478 LNYSPVKIDTLIGKKSTKNTTQGNMRDVEVQKVVEYAGEDADITL---QLKEYFAPKV-A 533 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R + ++L E L + I G RID + + E++ ++ K L++ I Sbjct: 534 ERPILEKLFKTV--EMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIY-TLS 590 Query: 230 GIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 G + + L LF + T + +L+ ++ + ++ R Sbjct: 591 GEVFNIASPQQLGKVLFEKLNLMKNPPKTKTGQYATGEEVLTKLTDNEIVQQILEIR-EL 649 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ L VS DGRL + TGR S QN+P Sbjct: 650 QKLKSTYVDALPALVSKIDGRLHTSYNQAVV-ATGRLSSTNPNLQNIP------------ 696 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I + ++ AD + IE R++A + ++ ++AF Sbjct: 697 ------------IKTAKGREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMMEAF 744 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 NG DI+ T +K + I +V+ + R + Sbjct: 745 NNGTDIHTATASKIYKIDIQEVTADMRRMA------------------------------ 774 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + + + K+ + + + ++ + V + Sbjct: 775 --------------KTANFAILYGSSAFNLSAQLKISTSEAKKLIDSYYGEFSAVKKFKD 820 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ + + RR + + G Sbjct: 821 EMIQKARQ--------------------------FEYAETFLGRRRYLAGINGGAMVSGQ 854 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSET 636 A + +Q + D++ M + K ++L VHDE+V + Sbjct: 855 AER----------NAVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVFDA 904 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLK--AEGYEAKRY 673 + + + LM A LP++ E K + Sbjct: 905 HKSEIDFLKENVIKLMEN----ALLLPVRIGVEAGVGKNW 940 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 352 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 107/704 (15%), Positives = 190/704 (26%), Gaps = 165/704 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP----S 55 K+ +D+ET S P + I + A D+ +P Sbjct: 325 KKIALDLETTSLDPF----------EGKIVGISIAVDEGKAFYIPIAHVGAKNIPIESVK 374 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNA 112 L+ L + HN F+ + LGI+ + + + A +L Sbjct: 375 KFLRDLFNSGKTVGGHNIKFDLKFISR-LGIEPQIPSF-DSMIEAYLLNPNEKKFNLDEL 432 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K I F +Y D + + Sbjct: 433 SLKLLGHKMISYEDLV-KDTIPLFAG------------DFSYIPVDTAVKYSCEDADMSL 479 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + L PL E + L+ + G D+ + L + + ++ L Sbjct: 480 RIHNLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALS 539 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----MSEGTLKSILSHSNITQLAKDL 277 I ++T G + L LF + V + T +L + L Sbjct: 540 NRIFEIT-GEAFNLNSPKQLGYILFEKLKLPSVKSTSTGAYSTDVEVLEYLANEYEIAKL 598 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL ++ + V+ + R+ + G + TGR S QNLP Sbjct: 599 ILEYRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTG-TATGRLSSSDPNLQNLP----- 652 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395 +R + +G ++ AD + IE RVLA I + Sbjct: 653 -------------------GRSDEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHITED 693 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I AF +DI++ T K F + +++ R I A Sbjct: 694 PNLINAFKENKDIHLETAKKLFGVSEEFITENMRRI--------------GKMVNFAIVY 739 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ A + L + + +A+ ++ Sbjct: 740 GVSPY------------------------------GLAKRTGLDVKDTKKMIEAYLDYYK 769 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V + ++ E R+ + Sbjct: 770 NVQEYMANIKEFAKKNGYVRTMF--------------------------GRKRDIPQINS 803 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629 + R +Q + DI+ M + ++L VH Sbjct: 804 KDQNIRAEG---ERIAI------NTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVH 854 Query: 630 DEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 DE+V E P+ V L M +PL + Y K Sbjct: 855 DELVFEVPENEVEYVKKLVKEEMENAVK--LRVPLLVDIYVEKY 896 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 107/717 (14%), Positives = 196/717 (27%), Gaps = 185/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDL 57 ++ +D ET + A QA + + + + P + Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389 Query: 58 ---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 L D +++ + N ++ I+ + GI + + T +L+ Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQP--FDDTMLLSYDLDAGRH 446 Query: 107 -SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + L + K GK+ I + Y Sbjct: 447 GHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAAT-----------------RY 489 Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T L+ L P + +R L + + G +D + L Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSH 267 A + +L+E+I L L LF G+ S+ + + Sbjct: 550 FAHDISRLEEEIYALAGCRFL-ISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERL 608 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 + ++ IL S + L ++ GR+ + GA +TGR S Sbjct: 609 AAEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGA-QTGRLSSTDPN 667 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G L+ AD + IE Sbjct: 668 LQNIP------------------------IRTEIGREIRNAFIAKKGHLLLSADYSQIEL 703 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+ A +A E ++AF EDI+ T + F V +E RA K + A+ Y Sbjct: 704 RLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARAKTINFAILYG---- 755 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L++ +FS + + Sbjct: 756 -ISAWGLAARLEIDRFS---------------------------------------AQEM 775 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + + + P R Sbjct: 776 IDRYFERFPAIRHYIDRTLDFVRLHGY--------------------------VETPFGR 809 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD--- 623 + +K A R+ +Q +S DI+ M Sbjct: 810 KTHLPAIKSRKVTERQAA---ERQAINAP------IQGMSADIIKRAMVRMEPALAKVGL 860 Query: 624 ----IVLTVHDEIVSETPDTPYFSVGTLCSL--MTKN-PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + M P + L+ E + Sbjct: 861 SSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSW 917 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 193/699 (27%), Gaps = 153/699 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----TEQSAMPSDL 57 + D ET ++ + +++ + +L Sbjct: 340 YIAFDTETSGKN----------VMESDLVGVSFSPKAGIAYYVPINGFSDDGTKDLLDEL 389 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LA 115 L +AHN+ F+ + K GI + + TS+ A S LK+ Sbjct: 390 SPLLE-GGPKKIAHNAKFDYMALYKH-GIRVSPL-YFDTSIAAFLLNETSVGLKDLAATR 446 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L GK + A+ ++LF R+L Sbjct: 447 LGIQMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMTFRLFT--MLEKEIVERKLQD 504 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 E L + + G ID D + L + ++ + ++ I ++ + Sbjct: 505 LFY---TLEMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEIAGYEF-NL 560 Query: 236 RQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +LF G+ T + L + DLIL+ + + Sbjct: 561 KSPQQLSKFLFQDLGLKGIRKTSKGYSTDAATLEALSGQHPVIDLILSYRQLTKLKDTYV 620 Query: 293 NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L VS S GRL A TGR + QN+P Sbjct: 621 DALPLMVSRSTGRLHTNFSQTSA-VTGRLASSDPNLQNIP-------------------- 659 Query: 352 TIADPLGLASDCVRSCIIA----------SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR +A L+ AD + IE RVLA + E +A Sbjct: 660 ----IRSSLGKEVRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEA 715 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F+ DI+ T ++ F PI+ V R +GK + + G+ + Sbjct: 716 FSRDIDIHALTASRLFGVPIESVDDNMRRMGKTINFGII--------------YGMSGFR 761 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A L L K + + V + Sbjct: 762 L------------------------------ARDTGLEQREANLFVKRYMDQFPRVKAYF 791 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + L + + P RR D+ Sbjct: 792 EQLIKEAEKKGY--------------------------VETPLGRRRYLPDITSSNPQRR 825 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 A + +Q ++ DI+ + M + ++L VHDE++ E Sbjct: 826 EAARRAA---------INMPIQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFE 876 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + M+ +PL E + Sbjct: 877 VAESQLDRAAEVIVREMSTAFD--LSVPLVVEAEYGPNW 913 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 110/717 (15%), Positives = 198/717 (27%), Gaps = 185/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDL 57 ++ +D ET + A QA + + + + P + Sbjct: 340 QVAVDTETDNLD----------ATQAQLVGVSLSTEAGKACYIPCGHGGHDLLDQKPDQM 389 Query: 58 ---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 L D +++ + N ++ I+ + GI + + T +L+ Sbjct: 390 DLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQP--FDDTMLLSYDLDAGRH 446 Query: 107 -SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + L + K GK+ I + Y Sbjct: 447 GHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAAT-----------------RY 489 Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T L+ L P + +R L + + G +D + L Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSH 267 A + +L+E+I + G L LF G+ S+ + + Sbjct: 550 FAHDISRLEEEIY-VLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERL 608 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 + + IL S + L V+ GR+ + GA +TGR S Sbjct: 609 AAEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPN 667 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ IA G L+ AD + IE Sbjct: 668 LQNIP------------------------IRTEIGREIRNAFIAKKGHLLLSADYSQIEL 703 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+ A +A E ++AF EDI+ T + F V +E RA K + A+ Y Sbjct: 704 RLAAHVADEKALLQAFREKEDIHALTAKQLFG----HVDRESRARAKTINFAILYG---- 755 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L++ +FS + + Sbjct: 756 -ISAWGLAARLEIDRFS---------------------------------------AQEM 775 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + + + P R Sbjct: 776 IDRYFERFPAIRHYIDRTLDFVRLHGY--------------------------VETPFGR 809 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGY 622 + +K A R+ +Q +S DI+ M K G Sbjct: 810 KTHLPAIKSRKVTERQAA---ERQAINAP------IQGMSADIIKRAMVRMEPALAKAGL 860 Query: 623 ---DIVLTVHDEIVSETPDTPYFSVGTLCSL--MTKN-PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + M P + L+ E + Sbjct: 861 SSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSVDLEVEIGTGTSW 917 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 194/699 (27%), Gaps = 155/699 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMP 54 ++ +D ET S P+ A + + A+ + Sbjct: 352 RQIGLDTETNSLDPMT----------AKLVGISMAFAAGDAVYIPVAHTLAEQLDWQEIS 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNA 112 L +L D+ + + N +++ +FK GID+ + + L +L + Sbjct: 402 GSLKPFLEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIA-GDAMLASYIVESHLSHNLDDL 459 Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + L + GK + EY +D + Sbjct: 460 AMRWLGLETISYESLCGKGAKQ---------------ISFADVNVAQATEYACQDADFAL 504 Query: 172 ELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L D E + + + G +D + + + E +L++ Sbjct: 505 RIEQHLRTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQ 564 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKD 276 L + L+ LF GI T +S+L Sbjct: 565 QAYDLAGQPF-NLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPK 623 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 LIL + + + L E ++ GR+ A TGR + QN+P Sbjct: 624 LILQNRSLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVA-ITGRLASNNPNLQNIP---- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR A +G +V AD + IE R++A ++G+ Sbjct: 679 --------------------IRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGD 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 AF N ED++ T A+ F +K++ EQR K + L Y G Sbjct: 719 ATLQAAFQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMG-----EYGLAK 773 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + S + F + + ++ +F + L G L Sbjct: 774 SLGIDNVSAAMFIKRYFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYL---------P 824 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + G + + + Sbjct: 825 DIHSNHAMKRAGAERAAINAPMQGTASDL-----------------------IKKAMIDV 861 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +N + ++Q +VL VH Sbjct: 862 SKFLMNQKSRL--------------VMQ-------------VHDE---LVLEVH------ 885 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + L +M++ + +PL AE K + Sbjct: 886 --ESELDWIQIKLPEIMSQVGAEVLNVPLLAEVGVGKNW 922 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 183/702 (26%), Gaps = 164/702 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + ++A + + + Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 396 ARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P + E + L+ + + G ID + IA L Sbjct: 499 QLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIATRLVDL 558 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + L G + + F + + T + +L Sbjct: 559 EAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 618 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 672 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G ++V AD + IE R++A I+G+ Sbjct: 673 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 712 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 713 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 767 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + E + + G L Sbjct: 768 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWL---------P 818 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + A++ +L M + Sbjct: 819 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 860 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632 RD M +VL Sbjct: 861 -------------------------------RD--KLASRMIMQVHDE---LVL------ 878 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L +M +PL AE + Sbjct: 879 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 182/702 (25%), Gaps = 164/702 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + ++A + + + Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFAVEPGKAAYLPVAHRGPDMPEQLPLDDVL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 396 ARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 454 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID + IA L Sbjct: 499 QLHCALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMRLVDL 558 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + L G + + F + + T + +L Sbjct: 559 EAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 618 LLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 672 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G ++V AD + IE R++A I+G+ Sbjct: 673 --------------------VRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGD 712 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 713 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 767 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + E + + G L Sbjct: 768 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWL---------P 818 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + A++ +L M + Sbjct: 819 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 860 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632 RD M +VL Sbjct: 861 -------------------------------RD--KLASRMIMQVHDE---LVL------ 878 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L +M +PL AE + Sbjct: 879 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 916 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 104/702 (14%), Positives = 184/702 (26%), Gaps = 164/702 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A + +++ + + + Sbjct: 67 AFDTETTSLDPMV----------AQLVGLSFSTEPGKAAYLPVAHRGPDLPEQLPLDDVL 116 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 117 ARLKPWLESAERKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 174 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 175 ALRHLGVKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 219 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P + E + L+ + + G ID + IA +L Sbjct: 220 QLHHALYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIEL 279 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 280 EGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 338 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L V+ GR+ A TGR + QN+P Sbjct: 339 LLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 393 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 394 --------------------VRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGD 433 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 434 ASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMS-----AFGLAS 488 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + + + E + + G L Sbjct: 489 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRTVAKEKGYVETVFGRRLWL---------P 539 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + A++ +L M + Sbjct: 540 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLT---------------- 581 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-NATKNGYDIVLTVHDEI 632 RD M +VL Sbjct: 582 -------------------------------RD--KLASRMIMQVHDE---LVL------ 599 Query: 633 VSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L +M +PL AE + Sbjct: 600 --EVPDDELSLVREKLPEMMCGVAK--LKVPLVAEVGAGANW 637 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 92/703 (13%), Positives = 187/703 (26%), Gaps = 169/703 (24%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---------MPSD 56 +D ET S + +A + + A+ Q + + Sbjct: 329 LDTETDSLNFM----------EARLVGVSLAYQAGKACYIPLQHQDMSIPQLPLNLVLNK 378 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114 + +E + V N ++ + K + T +++ + Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNY-DVTFKG-PIEDTMIMSYVIDSTESHGMDKLAK 436 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ + GK + + Y D + T +L Sbjct: 437 KYLDHDCISFESVVGKGVKQL---------------TFDQVSIDDAYLYASEDADVTLQL 481 Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 ++ L + E L I G I ++ + + + L+ Sbjct: 482 YEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLEN 541 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILSHSNITQLAKDLI 278 + ++ + + LR LF I + T + +L + +I Sbjct: 542 EAYQIAEQPF-NLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEELSHDHALPKVI 600 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + S + L + ++ + R+ + A TGR + QN+P Sbjct: 601 LEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVA-ITGRLASSEPNLQNIP------ 653 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 VR IA+ ++V D + IE R++A ++ + Sbjct: 654 ------------------IKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKDPG 695 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + AF EDI+ +T + FNT VS EQ Sbjct: 696 LLDAFNQNEDIHRSTASAIFNTNDASVSSEQ----------------------------- 726 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + L + + + + + K+ GV Sbjct: 727 ---------------RRFAKVINFGLIYGMSAFGLSQTLNIDRNSAKNFIDQYFEKYPGV 771 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 RRL + Sbjct: 772 KNYMDQGKLVAKEQGYVETVF--------------------------GRRLWVPLINSSN 805 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDE 631 A + +Q + D++ M N K +++ VHDE Sbjct: 806 GIQRAAAERAAINA---------PMQGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDE 856 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V E P+ + + +M+ + +PL A+ + Sbjct: 857 LVLEVPNAELDIIKTEIPKIMSNVAT--LDVPLIADLGSGINW 897 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 192/701 (27%), Gaps = 158/701 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPS 55 + +D ET S PL + + A + ++ Sbjct: 358 IALDTETTSTDPL----------NGALVGISLAVEPGTGYYLPVGHLTGEPQLPLESIRD 407 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L +L D V N ++ + + G++ + T + LK Sbjct: 408 ALAPFLGDPRKPKVGQNLKYDLLAL-RLAGMEAQGLAF-DTLLAEWLVDPASRALGLKEM 465 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + G R + Y D E T Sbjct: 466 AERYLGVQMTRIEELIGTGKNQR---------------TMAQVSVAQVAPYAAADAEITL 510 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L D E L + + G +D+ + ++ ++Q +++ Sbjct: 511 RLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIE 570 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLA 274 ++I L + T L LF ++ D + T +L Sbjct: 571 KEIYALVGHPF-NINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPV 629 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 DLIL S ++ L + V+ GR+ G S TGR + QN+P Sbjct: 630 LDLILENRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTG-SVTGRLASSDPNLQNIP-- 686 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 VR+ IA G L+ D + IE R++A +A Sbjct: 687 ----------------------TRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVA 724 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ + AF G+DI+ T A + P++ V++E R K + L Y Sbjct: 725 NDEAMLAAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMS-----AFGL 779 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 DL + FE + + ++ + + L+G Sbjct: 780 SRSADLTLAEAENFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLK-NPA 838 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + +A + + I LP + R S Sbjct: 839 NPALKA------REEREAINAPIQGTAADIIKLAM-----------IRLPEALRAAGSRA 881 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + ++L VHDE+V Sbjct: 882 R-------------------------------------------------LLLQVHDELV 892 Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E P L +M +PL E K + Sbjct: 893 LEVPREEMPGTAKLVQHVMETAYP--LQIPLTTEARWGKNW 931 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 100/701 (14%), Positives = 190/701 (27%), Gaps = 156/701 (22%) Query: 1 MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----EQSAMP 54 M + +D ET S L +A + + + + Sbjct: 364 MKATLVAVDTETTS---LKTC-------EAELAGISLSATPATASFISFARTGLSREKTI 413 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L L + + N ++ ++ K G+++ + T + + +L + Sbjct: 414 ELLRPLLENPAIAKTGQNLKYDLLVLKNY-GLELSPISF-DTMLASYLLNPETTHNLDDL 471 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L G D P T Y +D + Sbjct: 472 AARHLKLRTTKYDELTGTGKTKLH---IDDVEPRKLTD------------YACQDADIAL 516 Query: 172 ELFKRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L E L + + +G ID + E + + +L Sbjct: 517 RLTAILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQL 576 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277 E I G + L LF + G+ ++ T +L Sbjct: 577 KETIH-SAAGESFNIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVGN 635 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + ++ L + ++ GR+ + + + TGR S QN+P Sbjct: 636 LLEYRSLQKIKTTYIDALPKMLNPRTGRVHTSFNQH-ITATGRLSSSNPNLQNIP----- 689 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395 +R I L+ AD + IE R+ A I+G+ Sbjct: 690 -------------------IRTPLGREIRKAFIPTDPRNLLLSADYSQIELRIAAEISGD 730 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I+AF N EDI+ T F+TP ++ + R K + + Y + Sbjct: 731 GKLIEAFRNREDIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYG-----IQPFGLSK 783 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L++ + ++ + ++ E L+G R Sbjct: 784 RLNIPRSEAADIISTYTAKYPGLFEALDTIKTTGREKGFVTTLLGR---------RRYLP 834 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +L + ++L S R Sbjct: 835 NLSSRNGNLQKAAERAAMNTPIQGTAADIIKC-----------AMILCSKR--------- 874 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + E+ +Q+ M L VHDE+V E Sbjct: 875 ---------------------MKEHDMQSS--------ML----------LQVHDELVFE 895 Query: 636 TPDTPYFSVGTLCSL-MTKNPSWA--KGLPLKAEGYEAKRY 673 T ++ L M + K +P++ + K + Sbjct: 896 TTPEEQENLSALVEEAMIEAAGMCGMKTVPVEVDCGTGKNW 936 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 104/694 (14%), Positives = 201/694 (28%), Gaps = 131/694 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQS-------AMP 54 + D ET P + A + + W +E + + + Sbjct: 367 IAWDTETTGLNP----------QTAKLVGISCCWGEEVNNIAYIPIEHKEGEQLSKEKVL 416 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L L ++ V N+ F+R++ GI + T + + L + Sbjct: 417 EKLRPILENKCYPKVFQNAKFDRLVLLNQ-GIQLNGV-VFDTMLASYVINPDKSHKLSSL 474 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 C + ++ L + D + A+ F Sbjct: 475 CKQY-LTNISSQDYL--ELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKRLAEI 531 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + ++L + E+ L + + ++G ID++ + L E L+E I + Sbjct: 532 PILEKLF--LEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIYEEAKEK 589 Query: 232 IRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + T +IL D +L S Sbjct: 590 F-NLESPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLKYRTLSK 648 Query: 287 SAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V + R+ + + TGR S QN+P Sbjct: 649 LQSTYIDNLPTLVSNQTHRIHTSFNQSV-TSTGRLSSSKPNLQNIP-------------- 693 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I+ LV AD + IE R+LA ++ E +KA+ + Sbjct: 694 ----------IRTELSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDC 743 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +DI+ + F+ ++++ E+R +GK + + Y G++ F A + Sbjct: 744 QDIHTLSAQLLFDK--EEITIEERNLGKTINFGVIYGMGSQRFAREA-----GVTPTKGK 796 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + +++ ++ + ++G + + Sbjct: 797 DFIKKYHQRYKKVFQFLENLKIEAITKGYVTTILGRRR------YFNFYSD--------- 841 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 L I L + YSD + S Sbjct: 842 ----------------------SLRNLYGCNPDEINL-DELKYSYSDSQLLRSA------ 872 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641 +Q S DI+ M K ++L VHDE+V E P Sbjct: 873 ------------ANAPIQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDELVFEIPLEEL 920 Query: 642 FSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + +M + +PL E + Sbjct: 921 EELQSEIKQIMENSVK--LTIPLLVEINSGINWM 952 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 110/704 (15%), Positives = 199/704 (28%), Gaps = 162/704 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPS 55 + +D+ET S P+ A + A A + + Sbjct: 334 IALDVETTSTDPMT----------ARLVGIALATSGQRSFYVPVNHANDDEQLDADEVRE 383 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC- 113 L L D + AH+ ++ ++ ++ G P + T + A G + LK+ Sbjct: 384 ALSPLLADPNTVVYAHHGKYDALVLERA-GYPRPRIAF-DTMIAAYLLGENALDLKSLAF 441 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L G+ + Q G+Y DVEAT L Sbjct: 442 NRLGMEMTEITTLIGRGRNQL---------------TMDLTDVQAAGDYACADVEATYRL 486 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P + E L + + G +D+DL+ L + + +L+ + Sbjct: 487 VEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELERE 546 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILN 280 I L + T L LF G+ + +L + D IL Sbjct: 547 IYGLAKHEF-NINSTRQLATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCILE 605 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L E V+ GR+ + A TGR S QN+P Sbjct: 606 YRQLLKLKSTYVDALPEQVNPETGRIHTSFNQTIA-ATGRLSSTDPNLQNIP-------- 656 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGK-------KLVVADLAGIEARVLA 390 VR IA G L+ AD + IE R++A Sbjct: 657 ----------------VRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G++ + AF G+DI+ T A F P+++V+ + R + K + + Y + Sbjct: 701 HLSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGM-----QA 755 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + + Q + + G Sbjct: 756 YGLARDTGMSRQDAQRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYT----- 810 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + + + ++ Sbjct: 811 ----PDIDSSNVNRRLAAERMA---------------------INMPLQGSAADIMKIAM 845 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 V + + +R R M L VHD Sbjct: 846 IRVHDE------MRRRGLRSR----------------------ML----------LQVHD 867 Query: 631 EIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P + ++ L +M K + +PL E + Sbjct: 868 ELLFEVPRSELRTMADLAVDVMEKVVT--LNVPLVVEVAAGANW 909 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 99/696 (14%), Positives = 185/696 (26%), Gaps = 159/696 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 D ET + P QA + ++A + L D Sbjct: 364 FAFDSETTALNP----------RQAELVGLSFATKAHSGWWVPASS--EALDALRPLFAD 411 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-ALNFSE 120 ++ + HN F+ + + T + +L L +S Sbjct: 412 NSITKIGHNLKFDLAILAAQS-CPVDG-PCYDTMLAHALIEPEQRHNLDTLAEDYLRYST 469 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + P D + + Q +Y D + T +L++ P Sbjct: 470 IRFSEL---------MPDAKKGSPLDYSSVD----PQALADYATEDADVTLQLWECFKPK 516 Query: 181 SDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + + G R+ + + + ++ + L + + Sbjct: 517 LEESGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVLEGQIATLKDAVYAAAGR 576 Query: 231 IIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285 + L LF + D ++ T + +LS +L S Sbjct: 577 EF-NLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSLAPKHPIVADLLEYRQLS 635 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L AV GR+ + TGR S QN+P Sbjct: 636 KLKSTYIDALPNAVDPVSGRVHTHYGQVQ-TATGRLSSNDPNLQNIP------------- 681 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G L+ AD + IE R+LA + ++ + AF Sbjct: 682 -----------VRSAQGREIRKAFVPREGWTLLAADYSQIELRILAALTADEGLLTAFRE 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G DI+ T AK F D VS++QR+ K++ + Y L Sbjct: 731 GRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYG-----ISAFGLAQRLG------ 779 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + T + + + A+ G+ + Sbjct: 780 --------------------------------TVSRTEAQNIIDNYFAQFPGIPGYMQAQ 807 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E RR D+ T Sbjct: 808 QESARAKGYVATV--------------------------CGRRRYLRDINSGN---GTIR 838 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 + R +Q + D++ M ++L VHDE++ + Sbjct: 839 AAAERNAI------NMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAP 892 Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++ L + M A P++ E + Sbjct: 893 GEESALRQLVTGGMQDALQLA--CPIEIEIGTGMNW 926 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 114/690 (16%), Positives = 213/690 (30%), Gaps = 137/690 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MPSD 56 +D+ET S P I + ++ + ++A + S Sbjct: 320 FALDLETSSLDPF----------NCEIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L + L D + V N ++ + GI P T + A +L++ Sbjct: 370 LKEILEDPSSKIVGQNLKYDYKVLM-VKGIS-PVYPHFDTMIAAYLLEPNEKKFNLEDLS 427 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L + + + F D P + A + Y ++ Sbjct: 428 LKFLGYKMTSYQELMSFS-SPLFGFSFADVPVDKAANYSCEDADITYRLYKILSMKLHEA 486 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 EL + E L + + G +D + + KL E ++ ++L E I ++ Sbjct: 487 ELENVFYRI---EMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQIAGEP 543 Query: 232 IRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF GI ++ T +L LIL Sbjct: 544 F-NINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILEYRKIQK 602 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++TL + V+ GR+ + G + TGR S QNLP Sbjct: 603 LKSTYIDTLPKLVNPKTGRIHASFHQTG-TATGRLSSSDPNLQNLP-------------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ +V AD + IE R+LA ++G++ +KAF Sbjct: 648 ----------TKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEE 697 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ +N ++V++E R +GK++ ++ Y L + Sbjct: 698 GIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTP-----YGLSVRLGIPVKEA 752 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 S F + + S+ + + E L G ++ + R K+ Sbjct: 753 EKMIISYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKN--------TQ 804 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 +EG + +A + +L D+ + N Sbjct: 805 SEGERIAINTPIQGTAADII----------------------KLAMIDIDEELRKRN--- 839 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS- 643 + M + VHDE+V E PD Sbjct: 840 -------------------------MKSRMI----------IQVHDELVFEVPDEEKEEL 864 Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + + MT +PL+ + K + Sbjct: 865 VDLVKNKMTNVVK--LSVPLEVDISIGKSW 892 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 143/695 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55 +L ID ET S A Q + + + + + Sbjct: 345 ELAIDTETSSLD----------AHQTDLVGISLSTKIGQACYIPIGHKFKGCLKKETVIK 394 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L D++V + N F+ I+ K GI++ T +++ ++ Sbjct: 395 KLKPLLEDKSVKKIGQNIKFDFIVLYKQ-GINMN--SMEDTMLMSYVLDAGKNRHNMDTL 451 Query: 113 CL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K GK I + Y A+ + Y Sbjct: 452 SEIHLQHKTISFKEIVGTGKKEINFSDVELDKAMEYAAEDAD-----ITYRLYKIFSKNL 506 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E + + E+ L + + G +ID + L E ++ KL++++ K++ Sbjct: 507 KLEKLTNIYEI--FEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEVFKISK 564 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLAS 284 + L ++ I ++ + T S+L LIL+ Sbjct: 565 KEF-NIASPKQLGEIIYNDLKIAVLKKTRKGSFATNASVLEDLAFKGHEFPKLILDWRQV 623 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 S + L E ++ + + T A+ TGR + QN+P Sbjct: 624 SKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIP------------- 670 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G L+ AD IE R+LA +A KAF+N Sbjct: 671 -----------IKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSN 719 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T ++ FN I KV ++ R K + + Y +++ Sbjct: 720 NEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYG-----ISQYGLAKQINVSNHEA 774 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + F + + + + + + G R+ G+ ++ Sbjct: 775 DEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGR---------RSHFNGINDKNFNV 825 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + + Sbjct: 826 RNFQERAAINAPIQGSASEIM-------------------------------RLAMIRLN 854 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + + K+ +L +HDE++ E P ++ Sbjct: 855 KKFESIKNNKSKI---------------------------LLQIHDELIFEVPVKEVKNI 887 Query: 645 GTLCS-LMTKNPSWAKGL-----PLKAEGYEAKRY 673 + MT L PL + + Sbjct: 888 TEIIKDEMTSVTE--SDLHTFSTPLTVDVNTGDNW 920 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 110/717 (15%), Positives = 189/717 (26%), Gaps = 184/717 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + ID ET S A QA + + Sbjct: 339 FIAIDTETSSTD----------ATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQI 388 Query: 52 ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 + D +V+ + N F+ I+ GI I T V++ Sbjct: 389 PVAEALERIKALCEDPSVLKIGQNLKFDMIVLG-ERGISIAPH--DDTIVMSFDLDAGLH 445 Query: 107 -SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L+ + K G H + Y Sbjct: 446 GHGMDELAATHLSHTCLAFKEVVGTGKKQLG---------------FHEVDLKTATRYAA 490 Query: 165 RDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L+KR E R L + + RG ++D + + +L A Sbjct: 491 EDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLSTEFA 550 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSH 267 + L+ +I L L LF G+ + T L+ Sbjct: 551 GQIAGLEGEIHTLAGTPFT-IGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVTELERLAR 609 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ + ++ R S + L ++ GR+ + GA +TGR S Sbjct: 610 DGGEEIVRKILEWRQ-LSKLKSTYTDALQAQINPKTGRVHTSYSLTGA-QTGRLSSTEPN 667 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R IA +G L+ AD + IE Sbjct: 668 LQNIP------------------------IRTEVGRQLREAFIAEDGHVLIAADYSQIEL 703 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+ A +A AFANG+DI+ T + F +V+++ R K + A+ Y Sbjct: 704 RLAAHMADVPALRDAFANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILYG---- 755 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 LD + + + Sbjct: 756 -ISRWGLAGRLD---------------------------------------VSADEAQAM 775 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + G+ + + R Sbjct: 776 IDRYFERFPGINRYIAETLSSVREKG--------------------------FTETLFGR 809 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---- 622 + + + R +Q S DI+ M Sbjct: 810 KTHFPRIASRNQGERQGA---ERAAINAP------IQGTSADIIKRAMVRMEPALAAAGL 860 Query: 623 ---DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA--KGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ + G + +M A +PL E K + Sbjct: 861 GHVRMLLQVHDELVFEAPEADAEAAGAVIREVMAGAAEPAVKLSVPLGVEIGVGKNW 917 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 105/714 (14%), Positives = 183/714 (25%), Gaps = 170/714 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + ID ET S P+ QA + + + Sbjct: 423 IIAIDTETSSLDPM----------QAELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGAD 472 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L V+ +A N+ F++++ + I T +L+ Sbjct: 473 LVPGQLDSDETLARLKPMLEAPDVLKIAQNAKFDQLVLAQR---GIRLAPVDDTLLLSYV 529 Query: 103 NGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + G A Sbjct: 530 LDAGRTDHGMDVLAEKYFGHRPIQFGAVAGSGRTFIG---------------FARVALDK 574 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLK 208 EY D + T L++ L P ER + + RG ID ++ + Sbjct: 575 ATEYSAEDADVTLRLWRVLKPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSR 634 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSI 264 L AQ+ +L+ I +L G + L LF G+ + T + Sbjct: 635 LSGEFAQDMARLEAVIFELA-GESFNLGSPKQLGDILFGKMGLAGARKTATGAWSTAAGV 693 Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 L IL+ S + L V+ GR+ + A+ TGR S Sbjct: 694 LDDLAEQGVPLAARILDWRQLSKLKSTYTDALPSYVNPETGRVHTSYALA-ATTTGRLSS 752 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P A +R IA G+KL+ AD + Sbjct: 753 SEPNLQNIP------------------------VRNEAGRKIRKAFIAPPGRKLISADYS 788 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA IA AFA DI+ T ++ F P++ + E R K + + Y Sbjct: 789 QIELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYG 848 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + FE + ++ + E + G Sbjct: 849 -----ISAFGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRK 903 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 C + + + Sbjct: 904 CH---------YPRITASNPSERAFNERAAINAPIQGSA--------------------- 933 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 + L + +S + + Sbjct: 934 ----------ADIIRRAMVRMDEALEKA-------------GLSA----QMLLQVHDE-- 964 Query: 623 DIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPS--WAKGLPLKAEGYEAKRY 673 +V E PD ++ + +M P +PL+ + A+ + Sbjct: 965 ---------LVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNW 1009 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 102/700 (14%), Positives = 186/700 (26%), Gaps = 160/700 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S P+ A I + + + + Sbjct: 343 SFDTETTSLDPMV----------AQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLPRDEVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L + V + ++ + I + T + + + + Sbjct: 393 AKLKPWLENPARKKVGQHLKYDAQVLANY-DIALNGVE-HDTLLESYVLESHRTHDMDSL 450 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A + Y D + T Sbjct: 451 ALRHLGVKTIKYEDVAGKGAQQIG---------------FDEVALDVAAAYAAEDADITL 495 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + + P ++ E + + + + G ID + IA +L Sbjct: 496 QLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGRLEAQSREIAVRLVEL 555 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + + L G + + F + + T + +L Sbjct: 556 EREAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 614 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L S + L ++ S GR+ A TGR + QN+P Sbjct: 615 LLLEHRGLSKLKSTYTDKLPRMINASTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G K+V AD + IE R++A I+G+ Sbjct: 670 --------------------VRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGD 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + ++AF+ GEDI+ T A+ F +VS +QR I KV+ L Y Sbjct: 710 ESLLRAFSQGEDIHRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMS-----AFGLAS 764 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + + F + ++ + + + G L Sbjct: 765 NLGITRDAAKLYIDRYFARYPGVANYMETTRASAKAQGYVETVFGRRLWL---------P 815 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + A++ +L M + Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTA--ADLIKLSMIAVDGWLE---------------- 857 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATKNGYDIVLTVHDEIVS 634 RD L M +VL Sbjct: 858 -------------------------------RDGLRSRMIMQVHDE---LVL-------- 875 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E PD V L +M+ +PL AE + Sbjct: 876 EVPDAELALVREKLPEMMSGVAK--LKVPLVAEVGAGTNW 913 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 108/706 (15%), Positives = 199/706 (28%), Gaps = 158/706 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET L A + + + + T + Sbjct: 346 YVAVDTETTGLDELT----------AELVGVSLSVEPGQACYIPLTHKASRSDDLFGSDD 395 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L D ++ + N ++ +F + LGI + T +++ Sbjct: 396 LAPGQMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAP--IDDTMLMSYA 452 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ + D+ PY A+ ++ Sbjct: 453 MHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKSAVTFDKVPMEDAVPYAAEDADVTLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W+LF R E T ++++ L ER L + + G +D D + ++ AQ Sbjct: 513 WKLFKPQLHR-AEVT-KVYETL------ERPLVPVLAQMERAGILVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNIT 271 + L+ DI +L G + L LF G+D T +L Sbjct: 565 KMAGLEADIHELA-GETFNVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLEDLATE 623 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L+ S + L + V+++ GR+ GA TGR + QN+ Sbjct: 624 HDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIAGA-ATGRLASTDPNLQNI 682 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 683 P------------------------IRSEEGRRIREAFVAPEGKVLVALDYSQIELRILA 718 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA D +AF G+DI+ T ++ F+ P+D+++ E R K + + Y Sbjct: 719 HIAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYG-----ISG 773 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + FE + ++ + E L G Sbjct: 774 FGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINT----- 828 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + Sbjct: 829 ----PNIGAKGPQAGFAARAAINAPIQ--------------------------------- 851 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 TA + R + D+ + + D Sbjct: 852 ----------GTAADVIRRAMIRMPEAI--------ADLPAKMLLQVH-----------D 882 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 E++ E ++ +M P + L + + Sbjct: 883 ELLFEVEKGAEDALIAAAREVMENANDPVVKLDVKLTVDAGVGANW 928 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 109/718 (15%), Positives = 199/718 (27%), Gaps = 171/718 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQ---- 50 + D ET S A QA + A A D + Sbjct: 401 IAFDTETTSLD----------AMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVG 450 Query: 51 ---------SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + +P L L DE+V+ VA N ++ +L K+ + +K + T Sbjct: 451 DLLGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDT 507 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 508 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------KANITFD 552 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + Y D + T L+ L P ER L + + RG +D Sbjct: 553 LVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVD 612 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ +L +AQ +L+++I G + L LF G+ ++ Sbjct: 613 RQILSRLSGELAQGAARLEDEIY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQW 671 Query: 259 GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T S+L I++ + + L V + R T ++ T Sbjct: 672 STSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETRRVHTSYSLASTTT 731 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ I++ G KL+ Sbjct: 732 GRLSSSEPNLQNIP------------------------VRTAEGRKIRTAFISTPGHKLI 767 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAF +G DI+ T ++ F P++ + E R K + Sbjct: 768 SADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINF 827 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L +++ FE + + + + + Sbjct: 828 GIIYG-----ISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVET 882 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + G + R+ + V +G + R A + Sbjct: 883 IFGRRINYPEI--RSSNPSVRAFN---ERAAINAPIQGSAADVIRRAMIKMEPALAEAGL 937 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + + Sbjct: 938 -----------------AERVRM---------------------------------LLQV 947 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ V DE ++ + S+M P+ +PLK + A + Sbjct: 948 HDE---LIFEVEDE-------DVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNW 995 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 117/699 (16%), Positives = 198/699 (28%), Gaps = 156/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----SD 56 D E S L VG + A A +P + Sbjct: 359 FAFDTECTS---LQAVGSH-------LVGIALAIAPNDAYYVPVGHEEGEQLPLADVVAA 408 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLA 115 L D + AHN+ F+ + G+ I T + A G LK+ Sbjct: 409 LGPLFADPNIPKFAHNAKFDAEVLA---GVGIQVAGLAFDTMIAAAMLGKRQGLKDLAFY 465 Query: 116 ---LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + G+ I+ + PY A H A Sbjct: 466 ELKLPEPPTTIEDLIGRGSKQISFAAVPIEQAAPYAAADALHTLLLTETLRGQLTTDTAL 525 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R+L+ R+ E L + + G +D + + +L + AQ +L E I G Sbjct: 526 RDLYYRV------ELPLIDVLTDMELTGILLDHEYLRELGKRFAQRIAELTEQIYAKAGG 579 Query: 231 IIRSSRQTYALRMYLFLITGI--------DLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + L LF GI L +L + IL Sbjct: 580 PF-NINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELSQLYPIAADILAYR 638 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++ L + V+ GR+ + GA TGR S QN+P Sbjct: 639 QLTKLKSTYIDALPQLVNPRTGRIHTSYNQIGA-ATGRLSSNNPNLQNIP---------- 687 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A+ G + V AD + IE RVLA I+G++ I A Sbjct: 688 --------------VRTEEGREIRRAFVAAPGHRFVAADYSQIELRVLAHISGDENLIAA 733 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G DI+ T ++ F D+V K QR + K + G+ Sbjct: 734 FQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVF--------------GVIYGIS--- 776 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + + + + G+ + Sbjct: 777 ---------------------------AFGLAQRLGIERDLARQLIDNLFEQFPGIRRYI 809 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + ++ ++ RR V D++ + Sbjct: 810 DQ--------------------------TLAFGRQHGYVQTLFGRRRVMEDLRASGARRA 843 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 A + +Q + DI+ M + ++L VHDE+++E Sbjct: 844 AAERE----------AINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAE 893 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ + L +M+ +PL + Sbjct: 894 APEEEVPAAAHLLREVMSNTYQLV--VPLGVNLETGPNW 930 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 100/699 (14%), Positives = 200/699 (28%), Gaps = 149/699 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAM-- 53 + D ET S +A + + + + + Sbjct: 349 KIVAFDTETDSLN----------THEANLVGFSLSVEKGKGIYVPVILSGGMFAPETISK 398 Query: 54 ---PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGL---- 105 + L + ++ + V HN F+ + G+ ++ + T + A Sbjct: 399 KDCLAVLEKLFAEKELTLVMHNGKFDLEVLA-ANGMSAKTECKIFDTMIAAWLLNPAASG 457 Query: 106 --PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 P SL+ L K K + Y ++ Y Sbjct: 458 KSPYSLEFLAETKLGLKGIEFKDIVQKNQ-TFADVPLEKAFKYGAEDSDF-----TLQLY 511 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 E + ++L + E + + ++ +G +D + + ++ +A + ++ Sbjct: 512 YLLKDEIKKSNLEKLF--YEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAVLISEKEK 569 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS--NITQLAKDL 277 +I K + L+ LF + ++ T ++L + + Sbjct: 570 EIYKEAGCEF-NIASPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFSTNDPLPKM 628 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 IL+ + + + L +GR+ + G + TGR S QN+P Sbjct: 629 ILDYRSYTKLQSTYVEALPLLADKNGRIHTSFLQTG-TATGRLSSRDPNLQNIP------ 681 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + +RS A G L+ AD + IE VLA ++G+ Sbjct: 682 ------------------VRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKN 723 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 AF NG D++ +T A + ++V EQR K + + Y A L Sbjct: 724 LCSAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANE-----L 778 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + F + + + E + + G R + Sbjct: 779 NISRTEAKNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGR---------RRYIPEI 829 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 K + +G + Sbjct: 830 KSSSKIVLQGAERI---------------------------------------------- 843 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSE 635 +NT K VQA K+G ++L VHDE++ E Sbjct: 844 -AINTPIQG---SAADIVKTAMIKVQA-----------ALEKSGTGAKMLLQVHDELIFE 888 Query: 636 TPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ ++ + M +PL+ K + Sbjct: 889 CPEDNAGNAISIIQREMENAVQ--LKIPLRVSVERGKNW 925 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 101/716 (14%), Positives = 185/716 (25%), Gaps = 179/716 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 + D ET + A + + A Sbjct: 380 VAFDTETDALSSAT----------AGLCGVSLAIAPGEACYIPVGHCEKEGLALEAAADL 429 Query: 53 -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + + L L D V+ VA N+ ++ + + I T +++ Sbjct: 430 VQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH---GIQVSPIEDTMLISYVLEA 486 Query: 106 P---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L K G K Sbjct: 487 GLHGHGMDELSELWLGHKPIPFKQVAGTGKAQISFKHVA---------------LSEATA 531 Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P E R + + + + G ++D + + +L Sbjct: 532 YAAEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSN 591 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF----LITGIDLVDMSEGTLKSILSH 267 + + + +L + + LF + G T +L Sbjct: 592 EFSLRMAEFEARATELVGRPF-NLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDVLES 650 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 + ++L+ S L A++ GR+ + A+ TGR S Sbjct: 651 LALEHELPRVLLDWRQLSKLKGTYTENLVAAIAERTGRVHTSYALA-ATTTGRLSSSDPN 709 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R IA GK L+ AD + IE Sbjct: 710 LQNIP------------------------VRTEEGRKIRKAFIAPQGKVLISADYSQIEL 745 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA I +AF G DI+ T ++ F+TPI+ + R K + Sbjct: 746 RLLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAIN---------- 795 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ A + + Sbjct: 796 ----FGIVYGIS------------------------------AFGLANQLGIPQGEAGAY 821 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + + G+ R Sbjct: 822 IKTYFERFPGIQAYMDATKAFVREHGYVTTIF--------------------------GR 855 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG- 621 ++ +++ R +Q + D++ M G Sbjct: 856 KINIPEIQAKSVGQRQFA---ERAAINAP------IQGAAADVMRRAMIRMPEALQAAGL 906 Query: 622 -YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ + + ++M K P+ A +PL E A + Sbjct: 907 SARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAVALSVPLTVEVRAAHNW 962 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 100/686 (14%), Positives = 195/686 (28%), Gaps = 133/686 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET L A + +++++ E + + Sbjct: 377 VCFDTETTGIDAL----------HAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVP 426 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + +E + + N ++ + G+ + K T + ++ L Sbjct: 427 FFENENIEKIGQNLKYDLKILSNY-GVTVKGK-LFDTMIAHYLINPDMRHNMDILAETYL 484 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +S + GK + D P D A E + K+ Sbjct: 485 KYSPKSIETLIGKKGKNQLSM--RDVPLEDIKEYAAEDADVTLQLKEIFTAELEKTETKK 542 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E L + + G R+D++ + ++ + + E K L+E I + + Sbjct: 543 LFD--EIEIPLVSVLADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYETAGEKF-NLA 599 Query: 237 QTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF I T + +L++ IL+ Sbjct: 600 SPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQMVKLQST 659 Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L E V R+ A TGR S QN+P Sbjct: 660 YILALPEQVDKKTLRVHTDYMQTVA-ATGRLSSNNPNLQNIP------------------ 700 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A L+ AD + IE R++A ++GE+ I AF NGEDI Sbjct: 701 ------IRTERGRQIRKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGEDI 754 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T AK F+ +++VS+EQR+ K + + Y L + Sbjct: 755 HRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVS-----AFGLSNQTSLSRSESAALI 809 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + ++ + + +S+ D E ++G R + + + Sbjct: 810 DAYYKTYPRLKSYISEQVDFAREKGYVQTILGR---------RRYLKDINSANAVVRSAA 860 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + ++ ++ N + Sbjct: 861 ERNAVNAPIQGSAADVI---------------------KIAMINIHKKLREENWKSK--- 896 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-L 647 ++L VHDE+V + + + + Sbjct: 897 -----------------------------------MLLQVHDELVFDVHNDELEKIQPMI 921 Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ E K + Sbjct: 922 KHEMENAFK--MSVPLEVELGLGKDW 945 >gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterococcus sp. 7L76] Length = 545 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 137/439 (31%), Positives = 213/439 (48%), Gaps = 20/439 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ Y+E I L AY+ D PV++ D +P+++L Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L DETV+ A N+ FER+ + LG+D + + W CT V T GLP SL L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 + K+ EGK LI FC + + +H W F Y RDVE Sbjct: 121 GLN--KQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ D + LDQ INDRG ID D V +L + L++ + +LT Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTGL 238 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + +R +L G++ + + + +L L + L+L R + S++ Sbjct: 239 E--NPNSVLQMRGWLLDH-GLETESLGKKAVDELLEQPIDENLKQVLVL-RQQLAKSSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + SD R RG QFYGA+RTGR++G QNLP+ S+ +++ + Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNF 354 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + + S+ +R+ + G K +V+D + IEARV+AW++GE W+ + F NG Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414 Query: 407 DIYVTTYAKAFNTPIDKVS 425 DIY + ++ F P++K Sbjct: 415 DIYCASASQMFGVPVEKHG 433 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 101/721 (14%), Positives = 176/721 (24%), Gaps = 185/721 (25%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------------- 49 D ET + A + + A T Sbjct: 372 FDTETDALSST----------HAGLCGVSLAVGPNEACYIPLTHEHEPTGDGGLDFGDGG 421 Query: 50 ----------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + L L D +V+ V N ++ + + + ++ Sbjct: 422 DARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKYDLAVMARR---GVRVAPIDDVMLI 478 Query: 100 ARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + + L K G + K Sbjct: 479 SYVLEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQKSFKHV---------------E 523 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDL 205 + Y D + T L + L P E R + + + G R+D D Sbjct: 524 LKSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDR 583 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TL 261 + L Q +L+E+ KL + + LF + + T Sbjct: 584 LRSLSSTFGQRMAELEEEAHKLAGRPF-NVGSPRQIGEILFGEMNLPGGKKTASGQWGTD 642 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 S+L + IL+ S + L A+ T A+ TGR + Sbjct: 643 ASVLEDLAQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRLA 702 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IAS G L+ AD Sbjct: 703 SSDPNLQNIP------------------------IRTETGRQIRQAFIASPGHVLISADY 738 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA I +AF +G DI+ T ++ F P++ + E R K + Sbjct: 739 SQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINF---- 794 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ + + Sbjct: 795 ----------GIIYGISAFGLAAQ------------------------------LGIDQG 814 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + G+ + Sbjct: 815 EAGAYIKTYFERFPGIRDYMDRTKALVKEQG--------------------------FVT 848 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----A 617 RR+ + R +Q + DI+ M Sbjct: 849 TVFGRRIHIPAIHSKSGAERQFG---ERAAINAP------IQGAAADIIRRAMIRMPGAL 899 Query: 618 TKNGY--DIVLTVHDEI-VSETPDTPYFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKR 672 + G ++L VHDE+ +V + +M P+ A +PL E A Sbjct: 900 AEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIMEGAALPAVALSVPLDVEAKAAGN 959 Query: 673 Y 673 + Sbjct: 960 W 960 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 100/712 (14%), Positives = 183/712 (25%), Gaps = 168/712 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 L ID ET S L A + + A Sbjct: 379 LAIDTETDSLDAL----------NANLVGLSLAVAPGRACYVPLRHGPPPGSGDLLAEAP 428 Query: 53 ----------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L D V+ + HN+ ++ + + + T +++ + Sbjct: 429 AAPAQLSQAEVVEALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYS 488 Query: 103 NGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + L G A Sbjct: 489 MDAGRHGHGMDELSLRHLGHRPIPFDEVTGTG---------------RARIPFSQVALDK 533 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L++ L P ER + + + + G ++D + + Sbjct: 534 ATAYAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELAR 593 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSI 264 + E +Q L+++I +L + L LF + + T S+ Sbjct: 594 IGEDFSQRMVVLEQEIHELAGKPF-NVGSPKQLGEILFDEQKLPGGKRGKNGAWGTDASV 652 Query: 265 LSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 L +L+ + + L+ + DGR+ + TGR S Sbjct: 653 LEDLAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSMAV-TSTGRLSS 711 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R +A G L+ AD + Sbjct: 712 TEPNLQNIP------------------------IRTEEGVRIRRAFVAEPGHVLLAADYS 747 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A AFA GEDI+ T A F DKV KE R K + + Y Sbjct: 748 QIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYG 807 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + F + ++ + E G Sbjct: 808 MS-----AFGLAARLGIGPGEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGRK 862 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + +GG+ + A + + Sbjct: 863 LWIDGIQAKEQ-----ARRGNAERAAINAPFQGGAAEIIKRAM--------------VRM 903 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 P++ R +S + Sbjct: 904 PAALRAA----------------------------------GLSA----RMLLQVHDE-- 923 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E P+ + + +M + +PLKAE + Sbjct: 924 ---------LLFEVPEAEVDATAECVRQVMESVAT--LRVPLKAEIGHGANW 964 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 184/659 (27%), Gaps = 147/659 (22%) Query: 32 LCA---YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + A ++ + L + P+ L + + H++ + GI Sbjct: 348 GISRIFVAVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAK-SALWMLHHHGI 406 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ S + T V A +S G LI + P + Sbjct: 407 ELKSLAF-DTMVAAYLLNPTAS-------------------GYDLIDLALEHLGIVLPVN 446 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +A + + + + RL + E L + + G +D + Sbjct: 447 GEVSLAAKADAILKLAGELVKKLHLQEEDRLY--FEVELPLVQVLADMEMAGVTVDKQGL 504 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++ + + L I L + L LF + + ++ T Sbjct: 505 KEMSAELHDMIESLAHRIHTLAGEDF-NINSPKQLGHILFEKLKLPVYKKTKTGYSTDAE 563 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 +L LIL + + L+ V GRL T + TGR S Sbjct: 564 VLEKLAEEHEIVALILEYRQLAKLKSTYTDGLAALVDPQTGRLHSTFHQTV-TATGRLSS 622 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P + +R + G ++ AD Sbjct: 623 AEPNLQNIP------------------------IRLESGRRIRKVFVPRQKGNLILTADY 658 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++ + ++AF G+DI+ T A+ F P+++V+ + R+ K + + Y Sbjct: 659 SQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVY 718 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 A K+ Sbjct: 719 -----GISDFGL---------------------------------------ARDLKVSRR 734 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + A+ GV + + ++ Sbjct: 735 EAKSYIDNYFARCPGVKDYIDRVIKEAKHTGYVTTLLN---------------------- 772 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 RR D+ A S R +Q + DI+ M + Sbjct: 773 ----RRRYLPDLFSPN---YNARSFGERAAM------NTPIQGSAADIIKLAMVRVAREL 819 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +VL VHDE++ + P++ + L M +PL + + Sbjct: 820 RERNLQAKLVLQVHDELIFDVPESEVNELVDLVRDCMENALP--LDVPLVVDVKLGPNW 876 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 109/684 (15%), Positives = 197/684 (28%), Gaps = 131/684 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 + D ET PL A + A++WD E + +L Sbjct: 386 VCFDTETTGLNPLT----------AELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRP 435 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + +E + V N ++ + K I++ T + ++ L Sbjct: 436 FFENEDIQKVGQNLKYDIKVLHKY-DIEVRG-PLFDTMLAHYLINPDMRHNMDVLAETYL 493 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+S + GK + K D P D T A + E ++ Sbjct: 494 NYSPVSIETLIGKK--GKNQKSMRDVPLEDQTEYAVEDADITLQLKEHFEKELGDANTQK 551 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L D E L + + G +D + L E + + L+ I K + Sbjct: 552 LFD--DIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAGEEF-NIG 608 Query: 237 QTYALRMYLFLITGI-DLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + + + T + +LS+ +L+ + Sbjct: 609 SPKQLGEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTIIQNVLDYRGLAKLKSTY 668 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L E V DGR+ A TGR S QN+P Sbjct: 669 VDALPEQVEEDGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------------- 707 Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR + L+ AD + IE R++A ++ ED I+AF NGEDI+ Sbjct: 708 ----IRTERGRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNGEDIHA 763 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 +T AK FN PI++V++EQR+ K + + Y DL + + Sbjct: 764 STAAKVFNVPINEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTDLTRSESKDLIDT 818 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 ++ + + ++ + D E ++G R + + + Sbjct: 819 YYKTYPKLRNYMSNLVDDAREDGYVSTVLGR---------RRYLKDINSSNGVVRGAAER 869 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ ++ + N T Sbjct: 870 NAVNAPIQGSAADII---------------------KVAMINIHKKLAEGNFKTK----- 903 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + +V + P + TL Sbjct: 904 ----------------------MLLQVHDE-----------LVFDVPKNELEDIKTLVKT 930 Query: 651 -MTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL E + Sbjct: 931 EMESA--YTLSVPLDVEVGVGNDW 952 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 105/718 (14%), Positives = 191/718 (26%), Gaps = 168/718 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSA 52 ++ D ET L A + + A Sbjct: 395 RVAFDTETTDLSAL----------DAELVGISLAVAPGEACYIPLGHTGPSGDLFGGDDN 444 Query: 53 MPSDLL---------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 P L L D +V+ + N ++ ++ K+ GI+I + T +L+ Sbjct: 445 RPQQLAANEALALIGPLLEDPSVLKIGQNIKYDALVMKR-RGIEI--VSFDDTMLLSYAL 501 Query: 104 GLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + G + + Sbjct: 502 DGGRGQHGMDALAERH----------LGHMCMTFAQAMGHAPGAKKSDKTFAAMPLDKAT 551 Query: 161 EYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQ 210 EY D + T L+ L P ER L + + G ++D D++ +L Sbjct: 552 EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLS 611 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266 AQ +L+E+I G + L LF + ++ T ++L Sbjct: 612 HAFAQRTVRLEEEI-NGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLD 670 Query: 267 HSNITQLA-------KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTG 318 + + +L + + L ++ GR+ + GA+ TG Sbjct: 671 DLAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAETGRIHTSYA-LGATTTG 729 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R + QN+P +R+ IA G +L+ Sbjct: 730 RLASSDPNLQNIP------------------------IRTKEGREIRTAFIADKGMQLIS 765 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA +A KAFA G DI+ T ++ F P+ + E R K + Sbjct: 766 ADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFG 825 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + F+ + + + Q + + Sbjct: 826 IIYG-----ISAFGLANQLSISREEASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETI 880 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G + + + I + R ++R V Sbjct: 881 FGRRIH---------YPEINTKNPSMRGFLERAAIN-APIQGSAADIIRRAMIRMPAALV 930 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L S+R L Sbjct: 931 DAKLSSARML----------------------------------------------LQVH 944 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGL--PLKAEGYEAKRY 673 +V E D ++ T +M A L P+ + A + Sbjct: 945 DE-----------LVFEVADNEASALITTARRVMETAAEPALKLAVPIHVDAKAANNW 991 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 93/702 (13%), Positives = 179/702 (25%), Gaps = 159/702 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SA 52 + D ET S PL QA + + A + + Sbjct: 349 QFAFDTETDSLDPL----------QANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQ 398 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSL 109 + L L D + + + ++ + ++ G+++ T + + + Sbjct: 399 ALAQLAPLLTDPALRKLGQHGKYDLHVMRRH-GVELAGYA-DDTLLESFVLNSGSARHDM 456 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + GK + + Y D + Sbjct: 457 DSLAKRYLGYDTVKYEDVCGKGAKQ---------------IKFAQVSLEDATRYAAEDAD 501 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E L + I G +D + + +++ Sbjct: 502 ITLRLHQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRM 561 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + +L G + L+ LF + T + L Sbjct: 562 LAAQQKATELA-GRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAIADQHE 620 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ + GA TGR S QN+P Sbjct: 621 LPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA-ATGRLSSSDPNLQNIP- 678 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G+KL+ D + IE R++A + Sbjct: 679 -----------------------IRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHL 715 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F ID VS ++R K + L Y Sbjct: 716 SGDPGLVSAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMS-----AFG 770 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + F + + Q + + + G L Sbjct: 771 LARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDF----- 825 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + G + D I + R L+ Sbjct: 826 ----INAGSQGQRAGAERAAINAPMQGTAADI----IKRAMVSVDGWIAEHAQRALMILQ 877 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 V + + DI Sbjct: 878 VHDELVFE--------------------------ADI----------------------- 888 Query: 633 VSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + + M +PL + + Sbjct: 889 ------DFVDTLLSEVTARMATAAQ--LRVPLVVDSGVGDNW 922 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 193/706 (27%), Gaps = 158/706 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 + +D ET + A + + + Sbjct: 345 YVAVDTETTGLDEMV----------AELVGISLCVQPGKACYIPLIHKTHTGDDLFGSED 394 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L L D ++M + N ++ +F + LGI + T +L+ Sbjct: 395 LAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ-LGITVAP--IDDTMLLSYV 451 Query: 103 NGLP---SSLKNACL-ALNFSEHLTK--MEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 + L + K + GK+ + + PY A+ ++ Sbjct: 452 MHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQAVPYAAEDADITLRL 511 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R ++++ L ER L + + G ++D D + ++ AQ Sbjct: 512 WQLFKPQLHRIQVT--KVYETL------ERPLVPVLAAMERSGIKVDRDTLSRMSNAFAQ 563 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT 271 + L+++I +L + L LF G++ + T +L Sbjct: 564 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGKTGAYATGADVLEDLATE 622 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL+ S + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 623 HDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 681 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R +A GK LV D + IE R+LA Sbjct: 682 P------------------------IRSEEGRRIREAFVAEEGKVLVALDYSQIELRILA 717 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF +G DI+ T ++ F P+D+++ + R K + + Y Sbjct: 718 HIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIYG-----ISG 772 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + FE + ++ + E L G Sbjct: 773 FGLARNLRIPRAEAQGFIDRYFERFPGIRTYMDNTKAFAKEHGFVQTLFGRKINT----- 827 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + Sbjct: 828 ----PEIGAKGPRAGFAQRAAINAPIQ--------------------------------- 850 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 TA + R + DI + Sbjct: 851 ----------GTAADVIRRAMIRMPAAIK--------DIPATMLLQVHDE---------- 882 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++ E ++ +M P + L + + + Sbjct: 883 -LLFEVEKGAEDALIKAARDVMENASEPVVKLDVKLIVDAGKGANW 927 >gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3] Length = 502 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 198/506 (39%), Positives = 278/506 (54%), Gaps = 19/506 (3%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+D Sbjct: 62 QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359 GRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y YA Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 242 RAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGV 301 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC---SYLNT--ATSQLMR 589 G +L +RR K + I LPS R L Y + + +Y+ T + + R Sbjct: 361 PGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWER 415 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +TYGGK+ ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L Sbjct: 416 LKTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSK 475 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 L++ N WA LPL A G+E RYRK Sbjct: 476 LLSFNSDWAWDLPLSANGFETYRYRK 501 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 116/698 (16%), Positives = 197/698 (28%), Gaps = 153/698 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSD 56 D E S QP+ + + A + V Q + + Sbjct: 361 FAFDTECTSLQPVAS----------DLVGISIAIAPDTVCYIPVGHQSETQVPCGEVVTA 410 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115 L + + AHN+ F+ + GI + + T + A G LK+ Sbjct: 411 LAPFFANPQQPKFAHNAKFDMEVLAGA-GIKVSGLAF-DTMIAAAMLGKRQGLKDLAFYE 468 Query: 116 --LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + G+ I+ + PY A + E +R +EA Sbjct: 469 LKLPEPPTTIEDLIGRGNKQISFAEVPVEQAAPYAAADALYTL---RLTERLQRQLEAEP 525 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + + G R+D + + +L AQ L E I + G Sbjct: 526 ALHDLYYRV---ELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGP 582 Query: 232 IRSSRQTYALRMYLFLITGI--------DLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L LF GI L +L + IL Sbjct: 583 F-NINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADILTYRQ 641 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + ++ L + V+ GR+ + GA TGR S QN+P Sbjct: 642 LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGA-ATGRLSSNNPNLQNIP----------- 689 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G + V AD + IE RVLA ++G++ I AF Sbjct: 690 -------------VRTEEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDENLIAAF 736 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DI+ T ++ F V K QR + K + G+ Sbjct: 737 QQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVF--------------GVIYGIS---- 778 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + + A+ G+ + Sbjct: 779 --------------------------AFGLAQRLGIERDLARQLIDNLFAQFPGIRRYID 812 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 E + RR V D++ + Sbjct: 813 QTLEFGRQHGY--------------------------VQTLFGRRRVMEDLRASGARRAA 846 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 A + +Q + D++ M N + ++L VHDE+++E Sbjct: 847 AERE----------AINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEA 896 Query: 637 PDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 P+ L +M+ +PL + Sbjct: 897 PEDEVEPAARLLRDVMSSVYR-DLVVPLSVNLEVGPNW 933 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 346 bits (887), Expect = 9e-93, Method: Composition-based stats. Identities = 95/692 (13%), Positives = 183/692 (26%), Gaps = 135/692 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------M 53 +L D ET S P A + +++WD + Sbjct: 297 KRLSFDTETTSTNP----------RWADLVGISFSWDQGEGVYIPIRSPEGDVKLDESLV 346 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L + + V N ++ ++ + +G+++ + T V L Sbjct: 347 LEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGASF-DTMVAHYLLEAGARSHGLD 404 Query: 111 NAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L GK I Y A+ + Sbjct: 405 ELSLRYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPL---RLDPILSERI 461 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 EA L L +D E L + + G R+D++ + +L + + L+ +I +L Sbjct: 462 EAE-GLGDLL---TDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLEREIYQL 517 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L LF + ++ ++ T +L I+ Sbjct: 518 AGRDF-NINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAKIVQFRQY 576 Query: 285 SGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + ++ L + R+ + A TGR S QN+P Sbjct: 577 AKLKGTYVDALPVLICSKTDRVHTSFNQVVA-ATGRLSSNDPNLQNIP------------ 623 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 S +RS I KL+ AD + IE RVLA +G+ ++++ Sbjct: 624 ------------IRTQESREIRSAFIPGTPDWKLLCADYSQIELRVLAHFSGDPALMESY 671 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 EDI+ ++ + P+D+V+ R K + + Y LD+ + Sbjct: 672 QKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSP-----FGLAKSLDIDKD 726 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + F+ + + + ++G R Sbjct: 727 EAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGRRRA--IDGVRTA--------- 775 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D + + + V + +L V + Sbjct: 776 DKRDRLKRQLTMPERTAINTVIQGSAADII--------------KLAMLRVHRRLEKEGS 821 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + +V ETP Sbjct: 822 PAKL---------------------------LLQIHDE-----------LVFETPPEYLE 843 Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M + A +PL + + Sbjct: 844 QLAQLVREEMESARNLA--IPLVVDIKSGDNW 873 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 105/712 (14%), Positives = 192/712 (26%), Gaps = 168/712 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + D ET + A + + A Sbjct: 356 IVAFDTETDALSSAT----------AGLCGVSLAVAPGEACYIPLGHCEAEGLQLEAAAD 405 Query: 50 -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L D +V+ VA N+ ++ + + I T +++ Sbjct: 406 LTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY---GIEVGPIDDTMLISYVLE 462 Query: 105 LP---SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L+ K G + K Sbjct: 463 AGLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQKSFKYVG---------------LSEAT 507 Query: 161 EYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P E R + + + G ++D + + +L Sbjct: 508 CYAAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQLS 567 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILS 266 Q +L+ + +L + + LF G+ ++ T S+L Sbjct: 568 NEFGQRMAELEAEAHRLAGRPF-NLGSPKQIGEVLFKEMGLASGRVTATGAFSTDASMLE 626 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 ++L+ S + L A+S GR+ + ++ TGR S Sbjct: 627 DLAAQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLA-STTTGRLSSSD 685 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 N+P +R +A GK L+ AD + I Sbjct: 686 PNLMNIP------------------------IRTEEGRKIRRAFVAEPGKVLISADYSQI 721 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA I +AF G DI+ T ++ F P++ + E R K + + Y Sbjct: 722 ELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYG-- 779 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + Q + FE + ++ + + G Sbjct: 780 ---ISAFGLANQLGIPQDEAGAYIKTYFERFPGIRAYMDRTKQAARSQGFVHTIFGRKVN 836 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + V + +I+A + + Sbjct: 837 I---------PAVKS-----KSQAERAFGDRAAINAPIQGSAADV--------------- 867 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 R + G +R M Sbjct: 868 -MRRAMIRMPGALKAEGL----------------------TAR------ML--------- 889 Query: 625 VLTVHDEIVSETPDTPYFSVGTL-CSLMTKN--PSWAKGLPLKAEGYEAKRY 673 L VHDE+V E P+ +V + ++M K P+ A +PL E A + Sbjct: 890 -LQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPAVAISVPLVVEARAAPNW 940 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 198/701 (28%), Gaps = 164/701 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQ 59 L D ET + P+ +A + ++A+ E A+ Sbjct: 453 LCFDSETTAIDPV----------EADLVGLSFAYRAGEAFYVPVPADRAEAQAIVDQFKP 502 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNAC-LAL 116 + T+ V N ++ ++ KK G+++ K T + ++ L Sbjct: 503 VFENPTIEKVGQNLKYDLLMLKKY-GVEVQGK-LFDTMIAHYLIEPEMRHNMDMMAMTYL 560 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+S + GK + Q +Y D + T +L Sbjct: 561 NYSPVEIEALIGKKGKGQL--------------TMRDVDIQKVVDYAGEDADITLQLKHA 606 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P + E L + + G +ID + + +L + + +++ ++I + Sbjct: 607 FAPRLEKDNLHKLFDQVEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFE 666 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + G + L LF + T + ILS IL+ Sbjct: 667 IA-GESFNIGSPKQLGEVLFDKLKLDKNAKKTKTGQYATGEEILSKLEAEHEIARKILDY 725 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L +S GR+ + A TGR S QN+P Sbjct: 726 RELIKLKNTYVDALPLLISKRTGRIHTSFNQAVA-ATGRLSSTNPNLQNIP--------- 775 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + ++ AD + IE R++A +G+ + Sbjct: 776 ---------------IRTPRGQEIRKAFVPRGPEFVIMSADYSQIELRIMAAFSGDQTML 820 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF NG DI+ T +K F+ +D+V+ + R K + G+ Sbjct: 821 EAFNNGVDIHTQTASKVFHVGLDEVTSDMRRKAKTINF--------------GIIYGISS 866 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +Q +K + + + + A V Sbjct: 867 FGLAQRLK------------------------------IPRKEAGQIIEEYFAGFPAVKD 896 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 E + RR D+ Sbjct: 897 YIDQCIEKAR--------------------------GFGYAETILGRRRYLRDINSRNQ- 929 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIV 633 T R +Q + D+L M + ++LTVHDE+V Sbjct: 930 --TDRMFAERNA------VNAPIQGSAADMLKIAMIQIHEFMQAERLKSKMILTVHDELV 981 Query: 634 SETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M G+ ++ + + Sbjct: 982 FDAHRDEIDLLRVRVDEIMKNAIP--MGVKMETGIGTGENW 1020 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 98/696 (14%), Positives = 193/696 (27%), Gaps = 144/696 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 D+ET S + A I + D Sbjct: 332 KTFVFDLETTSLDYM----------NATIVGWVFLVDKNS-FYVPVGHDYLNAPKQLDFK 380 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 + L L D ++ V N ++ + ID+ T V + + Sbjct: 381 DVLDQLKLILEDVSIGKVGQNLKYDAHILANYQ-IDLQGIS-DDTMVKSYCLNSVATRHN 438 Query: 109 LKNACLA-LNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + LN GK I + PY C + Sbjct: 439 IDDLSEYYLNHKTIHFDDIAGKGKKQITFNQVDLETAFPYACEYVIVTDLLNHVLDEEIV 498 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L++ L E L + + G +D++ + Q I Q+ K + + Sbjct: 499 QYPKLVKLYQNL------ELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKDIQAQVF 552 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L G I + ++ LF G+ + T + L + DLIL Sbjct: 553 ELA-GDIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLLDHP--LVDLIL 609 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L L + + + T + TGR S QN+P Sbjct: 610 SYRTLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIP-------- 661 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A ++ AD + IE R++A ++ + + Sbjct: 662 ----------------IRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLL 705 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF + +D++ T + FN PI++V+K+ R K + L Y +D+ Sbjct: 706 DAFNHDKDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMS-----AFGLTKQIDV 760 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + F+++ + +++ + + ++G L + Sbjct: 761 SIIEAKQYIDTYFDNYPGVLHYMDSIKESAKVWGYVETVMGRRLYL---------PQINS 811 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 K L + + Sbjct: 812 KNKILQQHALRTA----------------------------------------INAPMQG 831 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + + + N DI +++ VHDE+V E ++ Sbjct: 832 SSADIIKKSMLDIHAWIGENNP------DI-------------RMIMQVHDELVFEVSES 872 Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + LM + +PLK ++ Sbjct: 873 KADEFAHKIQGLMANV--YLLDIPLKVNVGIGTSWQ 906 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59 + +D ET S P+ QAV+ ++A + P L + Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQ 393 Query: 60 -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109 L D V V + ++ + ++ GI + T + + + Sbjct: 394 ALALLQPLLEDPAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + T +Y D + Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDAD 496 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P + E L + + I G +ID + + K +++ Sbjct: 497 ITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + + G + L++ LF + T + L Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ GA TGR S QN+P Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A +G+KL+ D + IE R++A + Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ A+ F ID+V+ +R K + Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------G 756 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV ++ + RRL + Sbjct: 787 RFAGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624 + T + R +Q + DI+ M + + Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871 Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E + + V + + M +PL + + Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 97/722 (13%), Positives = 178/722 (24%), Gaps = 186/722 (25%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------------- 49 D ET + A A + + A T Sbjct: 401 FDTETDALS----------ATHAGLCGVSLAIGPNDACYVPLTHEHPPVEGAGGLDFGGD 450 Query: 50 -----------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 + + + L L D V+ V N ++ + + I T + Sbjct: 451 TDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMARR---GIRVAPIDDTML 507 Query: 99 LARTNG---LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 ++ + L K G ++ Sbjct: 508 ISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTG---------------KAQKSFKHV 552 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLD 204 + Y D + T L++ L P ER + + + RG R+D Sbjct: 553 ELKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPA 612 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----T 260 + +L +L+ ++ + + LF + + T Sbjct: 613 RLRRLSSEFGLRMAELEAQAHEIAGRPF-NVGSPRQIGEILFGELNLPGGKKTASGQWET 671 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + L T ++L+ S + L A+ T A+ TGR Sbjct: 672 GAATLEGLAETHALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRL 731 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P +R IA +G L+ AD Sbjct: 732 ASSDPNLQNIP------------------------IRTETGRQIRQAFIAKDGHVLISAD 767 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA I +AF G DI+ T ++ F P+ + E R K + Sbjct: 768 YSQIELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAIN---- 823 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ A + + Sbjct: 824 ----------FGIVYGIS------------------------------AFGLANQLGIDQ 843 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 K + + G+ + + Sbjct: 844 GEAGAYIKTYFERFPGIRTYMDATRAEVRSLG--------------------------FV 877 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616 R++ + R +Q + DI+ M Sbjct: 878 STVFGRKIHIPAIASKSGAERQFG---ERAAINAP------IQGAAADIIRRAMIRMPGA 928 Query: 617 ATKNGY--DIVLTVHDEIVS-ETPDTPYFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAK 671 G ++L VHDE+V ++ + +M P+ A +PL + AK Sbjct: 929 LEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEPAVALSVPLVVDARAAK 988 Query: 672 RY 673 + Sbjct: 989 NW 990 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 190/703 (27%), Gaps = 162/703 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPS----- 55 + +D ET S PL A + + AW D + A P Sbjct: 321 VALDTETTSLDPL----------HADLVGISCAWQAGGDYQAVYVPVGHRDAGPQLDRQT 370 Query: 56 ---DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---L 109 L +L D +A N+ ++ +F + GI T + + + L Sbjct: 371 VLTALRPWLEDPQAAKLAQNAKYDWRVFWRH-GIHPAGLA-RDTLLESYVLNSSHNGHDL 428 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK R Y D + Sbjct: 429 DTLAERYLQHQNIRYEEVVGKG---------------KSARNFADVPVAEALPYAAEDAD 473 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + L P + E L L+ + + G +ID + L ++++ Sbjct: 474 VCLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDM 533 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQL 273 ++ + G + ++ LF + ++ + T + +L+ + Sbjct: 534 ADCEQKAF-VLAGQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVLAQLAVHAD 592 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL+ + + L + ++ D GR+ Q A TGR S QN+P Sbjct: 593 LPRLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVA-ATGRLSSNDPNLQNIP- 650 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A G L+ AD + IE R+LA + Sbjct: 651 -----------------------VRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHL 687 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ ++AFA GEDI+ T A+ F+ + V R K + L Y Sbjct: 688 SGDARLLQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTP-----YG 742 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + Q + FE + + + + + L G + Sbjct: 743 LAQQLGIDQAAARQYMDRYFERYLGVLEYMAQTRALAKKQGYVETLFGRRLYV------- 795 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + A++ ++ M + R Sbjct: 796 --PEIRSSNPARRTYAERAAINAPMQGTA--ADLIKMAMIAVDAWLQERPERGR------ 845 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATKNGYDIVLTVHDE 631 M ++L Sbjct: 846 -----------------------------------------MILQVHDE---LIL----- 856 Query: 632 IVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ + L + M A +PL K + Sbjct: 857 ---EVPEAGLEAAKSALKARMEGVAELA--VPLLVGLGIGKHW 894 >gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] Length = 419 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 125/405 (30%), Positives = 204/405 (50%), Gaps = 19/405 (4%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S L K GV+AYA+ I L AY++DDE K+ D + + ++ Sbjct: 7 KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D ++ A N+ FER K +G+ + + W+CT+V + LP SL+ L S Sbjct: 67 ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126 Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175 E K EGK LI F CK + + H + W+ F YC RDV+ + + + Sbjct: 127 EQKLK--EGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQ 184 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L P+ + E + LDQ INDRG +D +LV + + + ++T Sbjct: 185 KLHKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTGLE-- 242 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+ +L G+++ +S+G + ++ ++ + + RL + +++ K Sbjct: 243 NPNSVSQLKGWLSER-GVEIDSLSKGAVAELIEDADG--EVLEALKLRLLMAKTSVKKYE 299 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET- 352 + +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ S+ L +++ + E Sbjct: 300 AIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEEL 359 Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + S+ +R+ I G + +VAD + IEARVLAW++G Sbjct: 360 ELFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 108/714 (15%), Positives = 184/714 (25%), Gaps = 172/714 (24%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------------- 51 +E ++ + V QA +T A A + Sbjct: 428 LEAKATFDIKSAVVDP--MQAELTGLALALGPNEACYVPLGHRQSGDAAGLFASGLEPDQ 485 Query: 52 ----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106 L L V+ + N F + GI + + +++ Sbjct: 486 IAARDALEALRPILESPGVLKIGFNIKF-TAVLLAQHGITLQNA--DDVQLMSYALDAGR 542 Query: 107 --SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 L L G + A Y Sbjct: 543 HAHGLDALAETWLGHKTLSYGEVIGSG---------------KAKLSFDQVAIDRATCYA 587 Query: 164 KRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + L++ L P ER L + + RG ID ++ +L Sbjct: 588 AEDADVALRLWRVLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDF 647 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSN 269 AQ +++ +I ++ I + L LF + ++ T +L Sbjct: 648 AQTAARIEAEIREIAGEEI-NIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELA 706 Query: 270 IT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 IL+ S + L V T A+ TGR S Q Sbjct: 707 EQGHEFPRKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQ 766 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R IA+ G KLV AD + IE R+ Sbjct: 767 NIP------------------------VRTEDGRKIRRAFIAAPGHKLVSADYSQIELRL 802 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA IA +AF +G DI+ T ++ F PI + E R K + Sbjct: 803 LAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINF----------- 851 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ A + + K Sbjct: 852 ---GIIYGIS------------------------------AFGLANQLGIPREEAGAYIK 878 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + G+ + + R+ Sbjct: 879 KYFERFPGIRAYMDATRDFCRAHG--------------------------FVETLFGRKC 912 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGY 622 Y D+K + + R Q + DI+ M K Sbjct: 913 HYPDIKASNASVRAF---NERAAINARL------QGTAADIIRRAMVRMEDALAEKKLSA 963 Query: 623 DIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E D ++ + +M P+ +PL+ + A + Sbjct: 964 QMLLQVHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNW 1017 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 105/691 (15%), Positives = 196/691 (28%), Gaps = 136/691 (19%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMP 54 M + + D ET PL QA + A++W+ E + Sbjct: 372 MKQTSVCFDTETTDLDPL----------QAELVGIAFSWEKTKGFYVPFPSEKEEVQKLI 421 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L + E + + N ++ + K +++ K T + ++ Sbjct: 422 EALRPFFEAEEIEKIGQNLKYDIKVLAKY-DVEVKGK-LFDTMIAHYLINPDMRHNMDVL 479 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN++ + GK + K D P T A E Sbjct: 480 AETYLNYTPVSIEELIGKK--GKNQKSMADVPVDQQTEYAVEDADVTLQLKEHFQKELGE 537 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++L + E L + + G +D + + L E + + L++ I + Sbjct: 538 ANTQKLFD--EIEIPLVQVLADMELEGINLDQEFLGSLSEALNNDIASLEKSIYEEAGEE 595 Query: 232 IRSSRQTYALRMYLFLITGI--DLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + T + +LS+ +L+ S Sbjct: 596 F-NIGSPKQLGEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAPDHEIVQHVLDYRGLSK 654 Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V+ GR+ A TGR S QN+P Sbjct: 655 LKSTYVDALPAQVNAKTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------- 699 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR + L+ AD + IE R++A ++ E+ +KAF Sbjct: 700 ----------IRTERGRQVRKAFVPRNEDYVLLAADYSQIELRIIAALSQEETMMKAFQE 749 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GEDI+ +T AK FN PID+V++EQR+ K + + Y DL + Sbjct: 750 GEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTDLTRSES 804 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + ++ + + ++ D E ++G R + + + Sbjct: 805 KELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGR---------RRYLKDINSSNAVV 855 Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 V SA + + + + KG + + Sbjct: 856 RGAAERNAVNAPIQGSAADIIKIAMIKIHHKL----------------KDKGLRTKM--- 896 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 + +V + + Sbjct: 897 ------------------------------LLQVHDE-----------LVFDVYKSELEE 915 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + S M +PL E + Sbjct: 916 VQELIKSEMEHAFK--LDVPLDVEVGLGDNW 944 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 342 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59 + +D ET S P+ QAV+ ++A + P L + Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQ 393 Query: 60 -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109 L D V V + ++ + ++ GI + T + + + Sbjct: 394 ALALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + T +Y D + Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDAD 496 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P + E L + + I G +ID + + K +++ Sbjct: 497 ITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + + G + L++ LF + T + L Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ GA TGR S QN+P Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A +G+KL+ D + IE R++A + Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ A+ F ID+V+ +R K + Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------G 756 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV ++ + RRL + Sbjct: 787 RFSGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624 + T + R +Q + DI+ M + + Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871 Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E + + V + + M +PL + + Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 92/686 (13%), Positives = 195/686 (28%), Gaps = 132/686 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----EQSAMPSDLL 58 K+ +D ET S +A + + + + + ++ L Sbjct: 373 KIAVDTETTSLDTF----------EAELAGISISAEPAKARFISFAGTGLDRGRSIEILR 422 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L + + N ++ ++ K G+++ + T + + +L + Sbjct: 423 PLLENPAIPKTGQNLKYDILVLKNY-GLELGPVGF-DTMLASYVLDPDGKHNLDDMAALH 480 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L G + D + A QL G + R++EA L + Sbjct: 481 LRLKTTKYDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLEGAF-TRNLEAEPRLME 539 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E L + + +G ID + + + + + L E I + Sbjct: 540 LCQTI---EFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHAAAGTDF-NI 595 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF + G+ ++ T +L +L + + Sbjct: 596 DSPKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYRSLQKLKTTYI 655 Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + V+ GR+ + + + TGR S QN+P Sbjct: 656 DALPKMVNPRTGRVHTSFNQHV-TATGRLSSSNPNLQNIP-------------------- 694 Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I + L+ AD + IE R+ A I+G+ I+AF NG DI+ Sbjct: 695 ----IRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGLDIHA 750 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T F+T + ++ + R K + + Y + L++ + + Sbjct: 751 ETARVIFDT--EDITADMRRKAKEVNFGVLYG-----IQPFGLSKRLNIPRNEAREIIDT 803 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E + S + ++ + L+G L R + + + Sbjct: 804 YREKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSN---------VQKAAER 854 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 +N + ++ Sbjct: 855 AAMNTPIQGTAADIIKC-------------------------------AMNLCSRRID-- 881 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + + + DE+V ET + + +L Sbjct: 882 ---------------AASMQSVMLLQVH-----------DELVFETTEDEKEGLKSLVEE 915 Query: 651 -MTKNPSWA--KGLPLKAEGYEAKRY 673 M + + K +P+ + K + Sbjct: 916 AMIEAAALCGLKNVPVAVDTGIGKNW 941 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 98/709 (13%), Positives = 188/709 (26%), Gaps = 167/709 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSAM 53 D ET S +A + ++A + + Sbjct: 455 HFAFDTETTSED----------QRKADLVGLSFAMAPGEAYYIPVGHTTTVDGQEPGTQL 504 Query: 54 PS-----DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 P L D ++ HN+ ++ + + GI + + + + A Sbjct: 505 PLSHVLVQLKPIFEDASIGKYMHNAKYDIAVMLRY-GIQVEGLSF-DSMLAAYLIEPGR- 561 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDV 167 L E ++ + + + +Y D Sbjct: 562 -----RGLGLKEQAF------QRLSILMTPITELIGSGSKIISMAQVPIRRAADYAGSDA 610 Query: 168 EATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L L E L + + G +D + + + E + ++ Sbjct: 611 DMTLRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQL 670 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 +K ++ I G + L LF+ + ++ ++ + A Sbjct: 671 RKAEQTIYDAV-GHHFNVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPA 729 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 D +L S ++ L + GR+ + AS GR S QN+P Sbjct: 730 IDSLLEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIASS-GRLSSSNPNLQNIP-- 786 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA L+ AD + IE R+LA I Sbjct: 787 ----------------------VRTELGRQIRRAFIADPSYVLLTADYSQIELRILANIT 824 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 E ++AF GEDI+ T A F+ P+++V+++QR + K + A+ Sbjct: 825 NEPRLVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVL------------- 871 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + K + Sbjct: 872 -------------------------------YGQSAYGLSQVTGMRPGDAADFIKRYHET 900 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + E R+ D+ Sbjct: 901 FPNIKVYVESTLEQARRQGYVNTCF--------------------------GRKRFIPDM 934 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 + A L RE +Q + D++ M ++L Sbjct: 935 RVLSHVERQA---LEREA------VNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQ 985 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMT--KNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E P + +M + +P+K + K + Sbjct: 986 VHDELVFEVPVEELERAKRIVKAVMEGIGALLVPQKVPIKVDMKSGKNW 1034 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 94/700 (13%), Positives = 185/700 (26%), Gaps = 168/700 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---SDLLQYL 61 D+ET + A + ++ W++ ++ + L Sbjct: 382 AFDLETTGLDEML----------AQVIGFSFCWEEGKSYYVPLVHETKELVDREQVRSLL 431 Query: 62 R----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACL- 114 + V N ++ + + GI +P + T V A S ++ Sbjct: 432 EEYLGSGRLSLVGQNIKYDYKVL-RQWGI-MPKNIYFDTMVAAWLLDSTSVFNMDYLAEK 489 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L++ K + + Y D + T L+ Sbjct: 490 YLDYKTVHYTDIVPKDKL------------------LSDIPLEQAVFYGAEDADVTFRLY 531 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 K L + E L ++ + G ++ L+ L + I Sbjct: 532 KLFSELLGARNLRSLLDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFEGRIDAIRNQI 591 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNR 281 + + L+ LF+ I + T +L +LIL Sbjct: 592 FAICGHAF-NLNSPQQLQEVLFVERNIPTGAKTRSGFSTSTDVLEPLRDDYPEVELILQY 650 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ L ++ R+ + G + TGR S QN+P Sbjct: 651 RTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTG-TETGRLSCKDPNLQNIP--------- 700 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +RS + G + AD + IE VLA +A + Sbjct: 701 ---------------VRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKG 745 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AFA G D++ +T + F+ P+D+V+ QR I K + G+ Sbjct: 746 AFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINF--------------GVMYGMG-- 789 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ K+ + + + ++ V Sbjct: 790 ----------------------------THSLAMDLKIPHSEAKQFIDQYFERYSSVRSF 821 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + V + R Sbjct: 822 VEATKTMSQQVGSVSTLLGHVRTITEINSRSAVE-------------------------- 855 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634 ++ R ++Q + DI+ M K G ++L +HDE++ Sbjct: 856 ---RAKAERIA------VNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIF 906 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E P+ + + +PL+ + Sbjct: 907 EVPEAEIEETKAVVKEALEHAVK--LSVPLRTSIEVGSNW 944 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59 + +D ET S P+ QAV+ ++A + P L + Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFASEVGCAAYLPFGHDYPGAPVQLDRGQ 393 Query: 60 -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109 L D V V + ++ + ++ GI + T + + + Sbjct: 394 ALALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + T +Y D + Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDAD 496 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P + E L + + I G +ID + + K +++ Sbjct: 497 ITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + + G + L++ LF + T + L Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ GA TGR S QN+P Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A +G+KL+ D + IE R++A + Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ A+ F ID+V+ +R K + Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------G 756 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV ++ + RRL + Sbjct: 787 RFAGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624 + T + R +Q + DI+ M + + Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871 Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E + + V + + M +PL + + Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 103/710 (14%), Positives = 192/710 (27%), Gaps = 173/710 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQ-- 59 + +D ET S P+ QAV+ ++A + P L + Sbjct: 344 QFALDTETDSLDPM----------QAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQLDRGQ 393 Query: 60 -------YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109 L D V V + ++ + ++ GI + T + + + Sbjct: 394 ALALLQPLLEDAAVRKVGQHGKYDMHVLRRY-GIVLAGYA-DDTLLESFVLTSGHARHDM 451 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + GK + TR Y D + Sbjct: 452 DTLARRHLGYETMKYVDLVGKGAKQ---IPFSHVGVQEATR------------YAAEDAD 496 Query: 169 ATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L P + E L + + I G +ID + + K +++ Sbjct: 497 ITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRM 556 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQL 273 + + G + L++ LF + T + L Sbjct: 557 V-IAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHA 615 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +IL + + L E + GR+ GA TGR S QN+P Sbjct: 616 LPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP- 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A +G+KL+ D + IE R++A + Sbjct: 674 -----------------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHL 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ A+ F ID+V+ +R K + Sbjct: 711 SGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINF--------------G 756 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A + + + + Sbjct: 757 LIYGMS------------------------------AFGLARQLGISRGEAQDYIALYFD 786 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV ++ + RRL + Sbjct: 787 RFAGVRDFMENTRQQARDRGYVETVF--------------------------GRRLYLNS 820 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDI 624 + T + R +Q + DI+ M + + Sbjct: 821 IASGNQ---TQRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALM 871 Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E + + V + + M +PL + + Sbjct: 872 ILQVHDELVFEADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 919 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 111/699 (15%), Positives = 205/699 (29%), Gaps = 164/699 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDLLQ 59 D E S P+ A + +++ + E D T A+ L Sbjct: 381 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 430 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 L + HN ++ +L K+ G+++ T V +L + L Sbjct: 431 VLA-RDTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARSVL 487 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ G + + Y D + + L Sbjct: 488 NYKMVPIADLIGDETDR---------------DSMREVDVETAAPYACEDADISYRLADE 532 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + T+ G R+D D++ ++ + + ++E++ + Sbjct: 533 LEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFE 592 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRL 282 L + T L LF + +V + T +S+L + L+L+ Sbjct: 593 LAGEEF-NINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWR 651 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ L++L E V GRL + + TGR S QN+P Sbjct: 652 STYKLKSTYLDSLGELVHPETGRLHTSFNQT-RTATGRLSSSDPNLQNIP---------- 700 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + +G L+ AD A IE R+LA ++G+D Sbjct: 701 --------------IRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRAT 746 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G DI+ A+ + + V+ EQR+ K + G+ Sbjct: 747 FQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWG 792 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 +Q ++ + + K +R + GV QL Sbjct: 793 LAQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLL 822 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 +L E + RR D+ S Sbjct: 823 NELVEKAQDKGYAETLL--------------------------GRRRYLPDIDSSNSNAR 856 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSE 635 +A ++ +Q D++ M ++L VHDE+V E Sbjct: 857 SAAERV---------AVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFE 907 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P + T+ M +P+ + + Sbjct: 908 VPPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 945 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 109/720 (15%), Positives = 191/720 (26%), Gaps = 168/720 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ--------- 50 + ID ET S P A + + + + + Q Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKI 434 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L + N+ ++R++ + GI + I T + Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRH-GIILNGV-VIDTLLADYI 492 Query: 103 NG--LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L SL F K + Sbjct: 493 FDATLKHSLDEIAYREFGFKPKSFSDVVKKG------------------EDFSYVDIKSA 534 Query: 160 GEYCKRDVEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVL 207 YC DV TR+L I + E+ L + I G ID + Sbjct: 535 SMYCGMDVYLTRKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLK 594 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLK 262 L + ++ +++++ + + L LF +D T Sbjct: 595 DLSLELTKKLNTIEKEVYNIAGSEF-NLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDV 653 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 ++L +I+ S ++ L + + GR+ + TGR S Sbjct: 654 AVLEKLESDHPIVKMIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLS 712 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P S +R + KL+ AD Sbjct: 713 SSNPNLQNIP------------------------VRTEFSRRIRKAFLPQKDWKLLSADY 748 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+L ++GE+ A+ ED++ T F D + ++R IGK + + Y Sbjct: 749 SQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKDAIDADERRIGKTINFGVIY 806 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GA + A G+ L + E + + + + + L+G Sbjct: 807 GMGA---QRFARSTGVSL--IEAKYFLSKFKERYPAVFNFLEYQERLALSQGFVETLLGR 861 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + ++ L I Sbjct: 862 RR------YFHFNKN-------------------------------GLGRLLGTPPNEID 884 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 L ++RR +Q +R +Q S DI+ M Sbjct: 885 LTTARRA-------------GMEAQQLRAAANAP------IQGSSADIIKLAMIQLHSAL 925 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 I+L VHDE+V E L M +PL E + Sbjct: 926 RETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENAVK--LSVPLIVETGVGVNWM 983 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 113/697 (16%), Positives = 198/697 (28%), Gaps = 155/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + +D ET S + QA + + A + + + Sbjct: 332 VALDTETTSLDEM----------QARLVGLSMAVEPGVACYIPLAHRGPEAGTQLPKQEV 381 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 L +L D T + H++ ++ +F GI + T + A L + Sbjct: 382 LERLRGWLEDATRSKLLHHAKYDTHVFAN-EGIALRGVT-EDTMLQAYVLESHRGVGLND 439 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A G Y D + T Sbjct: 440 LAQRYLGRSGVNYEDLCGKGAKQIG---------------FDEVAVDRAGFYAAEDADFT 484 Query: 171 RELFKRLIP--------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +L + L P + E ++ + I G ++D + + + + +E L++ Sbjct: 485 LQLHQALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQ 544 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLI 278 +L + L LF G+ +V + T + +LS ++ Sbjct: 545 RAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVL 603 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L S + L ++ GR+ A TGR + QN+P Sbjct: 604 LEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIP------ 656 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 LA VR +A LV AD + IE R++A ++ + Sbjct: 657 ------------------VRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDAN 698 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AFA GEDI+ T A+ F P+ +V+ EQR K + L Y G L Sbjct: 699 LQRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGV-----FGLASNL 753 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + F + + + E + + G +L + Sbjct: 754 GITRDAAQAYIDRYFARYPGVARYMDDTRRLAREQGYVETVFGRRLQL---------PDI 804 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 +G +V + L S R Sbjct: 805 RAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQD------WLVSQRL---------- 848 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 +R I+ +VL E P Sbjct: 849 ---------------------------SARLIM-----QVHDE---LVL--------EVP 865 Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + LM++ A +PL AE + Sbjct: 866 AVELDLVRETVPRLMSEVA--ALRVPLIAEVGVGHNW 900 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 113/704 (16%), Positives = 213/704 (30%), Gaps = 157/704 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ID ET S ++A + + A ++ + Sbjct: 342 YFAIDTETNSLNS----------QKADLVGISLAINENEAYYVPVGHKNKQDPNLKKQIK 391 Query: 51 -SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106 + L YL DETV V N ++ +F K GI++ + T +L+ + Sbjct: 392 IKELVKVLKPYLEDETVKKVGQNIKYDLKIFLKY-GIELK--SFEDTMLLSYSLDAGVNR 448 Query: 107 SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 +L L+ K GK+ + ++ Y C A+ Y Sbjct: 449 HNLDLLAKTHLDHDNIKFKDVVGTGKSEVTFDEVLIDNAYRYACEDADV-----TLKLYN 503 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +E ++ E L + + + G +ID ++ KL + + K L++ Sbjct: 504 LFKDRIVKEKCFQIYETL--EIPLVDVLARMENNGIKIDQVILKKLSNSFSADLKTLEKK 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLI 278 I KL+ + T L L+ I ++ T ++L L+ Sbjct: 562 IYKLSGEEF-NIASTKQLGDILYEKLKISGTKKTKKGNFATNVNVLEDLASKGNEFPKLV 620 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L S ++L E + + + T A+ TGR + QN+P Sbjct: 621 LEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQNIP------- 673 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +RS ++ G ++ AD + IE RVLA +A Sbjct: 674 -----------------IKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKEL 716 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 KAF N EDI+ T ++ F I K++++ R K + G+ Sbjct: 717 KKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINF--------------GIIYGIS 762 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 ++ + + E ++ K + Sbjct: 763 SYGLAKQIS------------------------------VSNPEAEQFLFSYFKKFPEIR 792 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 ++ E + +R+ + ++ Sbjct: 793 DYMQETLEFCRKNG--------------------------FVQTMFNRKCHFPNINDKNH 826 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632 T S R +Q + DI+ M N K +++ +HDE+ Sbjct: 827 ---TLKSFQERAAINAP------IQGAAADIIRFAMINIDKKILSKKIKSRLLVQIHDEL 877 Query: 633 VSETPD-TPYFSVGTLCSLMTKNP--SWAKGLPLKAEGYEAKRY 673 + ET D + + + M + +PL + AK + Sbjct: 878 LLETKDMDLKKEIQKIKNEMENAIDGDYNFSVPLIVDANSAKNW 921 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 105/708 (14%), Positives = 190/708 (26%), Gaps = 144/708 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE--PVKLWDRTEQ--------- 50 + ID ET S P A + + + + + + Sbjct: 385 KPIAIDTETTSLNPFK----------AELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEI 434 Query: 51 --------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L + N+ ++R++ + GI + + T + Sbjct: 435 NQINQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRH-GIILNGV-VMDTLLADYI 492 Query: 103 NG--LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L SL F K + Y + + Sbjct: 493 CDATLKHSLDEIAYREFGFKPKSFSDIV-KKGEDFSYVDIKSASMYCGMDVYLTRKLAII 551 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 Y R E + +L L + E+ L + I G ID + L + + Sbjct: 552 --YINRLKETSIKLINLLK---EVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNT 606 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLA 274 +++++ + + L LF +D T ++L Sbjct: 607 IEKEVYNIAGSEF-NLSSPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESDHPI 665 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +I+ S ++ L + + GR+ + TGR S QN+P Sbjct: 666 VKIIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAV-TATGRLSSSNPNLQNIP-- 722 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 S +R + KL+ AD + IE R+L ++ Sbjct: 723 ----------------------VRTEFSRRIRKAFLPQKDWKLLSADYSQIELRILTHLS 760 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 GE+ A+ ED++ T F D + ++R IGK + + Y GA + A Sbjct: 761 GEEVLKNAYLKNEDVHSLTAKILF--EKDAIDADERRIGKTINFGVIYGMGA---QRFAR 815 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ L + E + + + + L+G + Sbjct: 816 STGVSL--IEAKYFLSKFKERYPAVFKFLEYQERLALSQGFVETLLGRRR------YFHF 867 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++ L I L ++RR Sbjct: 868 NKN-------------------------------GLGRLLGTPPNEIDLTTARRA----- 891 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 +Q +R +Q S DI+ M I+L Sbjct: 892 --------GMEAQQLRAAANAP------IQGSSADIIKLAMIQLHSALRETGLAAKILLQ 937 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 VHDE+V E L M +PL E + Sbjct: 938 VHDELVLEVNPKDLEETKLLVQNTMENAVK--LSVPLIVETGVGVNWM 983 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 99/695 (14%), Positives = 179/695 (25%), Gaps = 151/695 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLL 58 K+ +D ET + + A + +++ + + A L Sbjct: 350 KVALDTETTDKEAIK----------AKLVGMSFSTAPGRAWYIPVSRETDTVKARLELLR 399 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-A 115 + V+ V N ++ + G+ P R T + L ++ Sbjct: 400 PFWEKADVLIVGQNLKYDLTVLASY-GVK-PKGRLFDTMLSHYVVQPELAHNMDYLASVY 457 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN+ + G P R + EY D + T L Sbjct: 458 LNYRPIPIEQLIG--------------PKGRGQRNMGDLDPKDVFEYACEDADVTLRLMA 503 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + + G +D + + ++ KL+ +I Sbjct: 504 PLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIY 563 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280 +L + LF I T + +L + IL Sbjct: 564 QLAGHPFM-ITSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILA 622 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L + V+ G L T + TGR S QN+P Sbjct: 623 HRGLKKLLSTYVEALPKLVNPQTGHLHTTFNQAV-TSTGRLSSSNPNLQNIP-------- 673 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G +R I G AD + IE R++A ++ + I Sbjct: 674 ----------------VRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLI 717 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF GEDI+ T A+ F + +VS+++R K + Y +D+ Sbjct: 718 EAFKKGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYG-----ISAFGLAERMDV 772 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + F + + + + ++ + G R + Sbjct: 773 SRTEARELIDNYFSTYPKVKEYMDSSIEKARRRGYIETAFGR---------RQYLADINS 823 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + V +L + Sbjct: 824 HNAVVRGYAERVAVNAPIQGTAADII---------------------KLAMIRIDQRLRA 862 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 L M L VHDE+ P Sbjct: 863 EG----------------------------LKTKMI----------LQVHDELNFSIPPA 884 Query: 640 PYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + S M + +PL+A+ K + Sbjct: 885 ELECAKAIIVSEMESA--YQMSVPLEADCGTGKNW 917 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 340 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 117/705 (16%), Positives = 200/705 (28%), Gaps = 161/705 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55 D ETR PL + A A + + + Sbjct: 380 FAFDTETRGTNPLRD----------DLVGIALATIPGSGWYVPLGHTTGEAQLPRERVIA 429 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + D +AHN+ F+ + ++ GI + + T + A +LK+ Sbjct: 430 ALRPFFADPARSRIAHNAKFDIEVLERA-GIPVAGVAF-DTMLAAALLDKRRNLKDLAFY 487 Query: 116 -LNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 LN + GK D P T A + + R Sbjct: 488 ELNLAAPLESIEALIGKGKNQ---VTFADVPIARATPYAAADADMTLRLKPALEAKL-RA 543 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + G +D+ + L E + +E +++++ I + Sbjct: 544 AGSVADVFYRLEMPLVPVLVRMEQAGILLDVPYMRALGERMGRELEQIEQQIYAIAGQTF 603 Query: 233 RSSRQTYALRMYLF------LITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNR 281 + L LF TG+D + L+ + ++ T +LIL Sbjct: 604 -NINSGDQLSEVLFGPKINLPTTGLDRTRTGRYSLTAQALEEL--QASDTTGIIELILRH 660 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L V+ GR+ GA TGR S QN+P Sbjct: 661 RRLSKLKSTYVDELPALVNPETGRVHTDYNQLGA-ATGRLSSNSPNLQNIP--------- 710 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR IA+ G L+ AD + IE RVLA + G+ I+ Sbjct: 711 ---------------TRTEEGREVRRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQ 755 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 F G DI+ T A+ F V K QR I K + + G+ Sbjct: 756 TFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVI--------------YGISPF 801 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +Q + + + + + Sbjct: 802 GLAQR------------------------------LGISREQARGLIDSLFDQFPRIRDY 831 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + + ++ RR D++ Sbjct: 832 IDR--------------------------TLDIGRSEGYVQSLFGRRRPMFDLRVS---- 861 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 RE + +Q+ + DI+ M ++L VHDE++ Sbjct: 862 GPRRQAAEREAI------NHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIF 915 Query: 635 ETPDTPYFSVGTLC-SLMTKN-----PSWAKGLPLKAEGYEAKRY 673 E P+ V L M P +A +PL+ E + Sbjct: 916 EAPEAEVDDVVALVRERMEGVLHGMEPPFA--VPLRVEIETGPNW 958 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 112/712 (15%), Positives = 186/712 (26%), Gaps = 178/712 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------S 51 +D ET A+Q + + A Q + Sbjct: 354 FAMDTETDGLD----------AQQCRLVGISLAIAPGKACYIPLDHQTTLDQPVRQPAIA 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-RWICTSVLARTNGLP---S 107 + + L L D TV+ + N F+ + ++ +P T +++ Sbjct: 404 EIAAALNPILADPTVLKIFQNGKFDLAVLRRH---QMPVIAPIDDTMLISYAQEAGAHGH 460 Query: 108 SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L L S G P T Y D Sbjct: 461 GMDELSVLHLGHSPISYDQVTGTGRNRL---PFPQVPIDKATA------------YAAED 505 Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L+ L P ER L + + G R+D + ++ A Sbjct: 506 ADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFALR 565 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--------MSEGTLKSILSHS 268 ++ +I +L + L LF G+ TL++I S Sbjct: 566 MADMETEIHQLAGRPF-NLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADES 624 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 A+ IL+ + + L E V+ T + TGR S Q Sbjct: 625 GHALPAR--ILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNLQ 682 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R IA G L+ AD + IE R+ Sbjct: 683 NIP------------------------IRTEEGSRIRRAFIADPGHVLISADYSQIELRL 718 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA +A +FANGEDI+ T ++ F P+ + R K + Sbjct: 719 LAHVADIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAIN------------ 766 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ A + Sbjct: 767 --FGIIYGIS------------------------------AFGLARSLAISPGEARQYID 794 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 A+ A++ G+ + E +V P RR Sbjct: 795 AYFARYPGIRDYMERTKEEARING--------------------------FVVTPFGRRC 828 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------ 622 + R+ Q + DI+ M Sbjct: 829 WVPGIADRNPARRGYA---ERQAINAPL------QGGAADIIKRAMVRLPAVLADNSFQT 879 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ +V L + M +PL E + Sbjct: 880 RMLLQVHDELLFEAPEAEAEAVARLVTTTMQDAAR--ISVPLVVETGIGTNW 929 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 89/697 (12%), Positives = 179/697 (25%), Gaps = 154/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 D ET PL A + ++A + S + Sbjct: 353 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEAAKVVERFS 402 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K + + T + + Sbjct: 403 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 460 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + EY D + T +L Sbjct: 461 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADVTLKLK 505 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P E L + + G +D + + + KL++++ Sbjct: 506 NYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQEV 565 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + T + LF + T + +L +L Sbjct: 566 YELAGAEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 624 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L E ++ G++ + + TGR S QN+P Sbjct: 625 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 676 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I N AD + IE R++A ++G+ Sbjct: 677 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 719 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G DI+ T AK + P+++V+ + R K + Y L Sbjct: 720 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERL 774 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + F + + + + E + + L + Sbjct: 775 GIPRSESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFL---------PDI 825 Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + SA + + + + ++R L S L D Sbjct: 826 NSHNAVVRGYAERNAINAPIQGSAADIIKLAMVRI--YERFEEEGLKSKMILQVHDELNF 883 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 Y +++ IVL Sbjct: 884 NVYKEE------------------------AEVVK-----------KIVL---------- 898 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL A+ E + + Sbjct: 899 ------------EEMENVMK--LQVPLIADCGEGENW 921 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 89/533 (16%), Positives = 162/533 (30%), Gaps = 87/533 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 ID ET S P+ A + + + + Sbjct: 361 AIDTETDSLDPMR----------ARLVGISLSVAPGEAAYLPLAHAYPGAPEQLPMAEVL 410 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L +L + + N+ ++R +F G+ I T + + P SL + Sbjct: 411 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 468 Query: 113 -CLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK A + Y D + T Sbjct: 469 VSRHLGRDDTLSYEQVCGKGTK---------------AITFDQVALDVATRYSGEDADLT 513 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ +RL P E + + Q I G +D DL+ + + + L Sbjct: 514 LQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTL 573 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 + +L G + + LF + + + T + +L Sbjct: 574 EAQAFELAGGAF-NLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPR 632 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +IL+ + S L + ++ D GR+ A TGR + QN+P Sbjct: 633 VILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 687 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G + +D + IE R++A ++ + Sbjct: 688 --------------------VRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQD 727 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AFA GEDI+ T A+ F +VS +QR + KV+ L Y Sbjct: 728 AGLLAAFAAGEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMS-----AFGLAR 782 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 L L++ + + F + ++ + E + + G L Sbjct: 783 NLGLERSAAQLYIDRYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDI 835 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 111/699 (15%), Positives = 205/699 (29%), Gaps = 164/699 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDLLQ 59 D E S P+ A + +++ + E D T A+ L Sbjct: 358 AFDAEATSRDPMT----------ADLVGLSFSSEAERATYVPTPLPDDTPTDAVLDVLGP 407 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 L + HN ++ +L K+ G+++ T V +L + L Sbjct: 408 VLA-RDTEKLGHNLKYDLLLLKQH-GVEV-GGTLFDTMVAHYLVAPEENHNLDDVARSVL 464 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ G + + Y D + + L Sbjct: 465 NYKMVPIADLIGDETDR---------------DSMREVEVETAAPYACEDADISYRLADE 509 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + T+ G R+D D++ ++ + + ++E++ + Sbjct: 510 LEAQLEDGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFE 569 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRL 282 L + T L LF + +V + T +S+L + L+L+ Sbjct: 570 LAGEEF-NINSTQQLGEILFEKLDLPVVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWR 628 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ L++L E V GRL + + TGR S QN+P Sbjct: 629 STYKLKSTYLDSLGELVHPETGRLHTSFNQT-RTATGRLSSSDPNLQNIP---------- 677 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + +G L+ AD A IE R+LA ++G+D Sbjct: 678 --------------IRTEMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRAT 723 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G DI+ A+ + + V+ EQR+ K + G+ Sbjct: 724 FQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNY--------------GIPYGISPWG 769 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 +Q ++ + + K +R + GV QL Sbjct: 770 LAQR------------------------------MRMPVDEAQDIIKQYRKSYPGVSQLL 799 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 +L E + RR D+ S Sbjct: 800 NELVEKAQDKGYAETLL--------------------------GRRRYLPDIDSSNSNAR 833 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSE 635 +A ++ +Q D++ M ++L VHDE+V E Sbjct: 834 SAAERV---------AVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFE 884 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P + T+ M +P+ + + Sbjct: 885 VPPDELDAAQTMIDDEMRDALPL-DDVPVTVDMDTGDNW 922 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 91/692 (13%), Positives = 179/692 (25%), Gaps = 156/692 (22%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 D ET PL + ++ + + A + L Sbjct: 382 FDTETTGLNPLMDN----------LLGVSFCAEPHKAWYMPVS-GPADLEAVRPLLEGPA 430 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-ALNFSEHL 122 + H+ F+ + + GI + + T + G+ + L +S Sbjct: 431 -EKIGHHLKFDLEVL-RANGIHVKG-PFFDTLLAHALIAPGMKHGMDVLAENLLQYSTIK 487 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K ++ G+Y D + T +L L Sbjct: 488 LKD-------------IAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVK 534 Query: 183 G----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + G R+ + + K + L E I + + Sbjct: 535 ESGMEKLFRTVELPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPL 594 Query: 233 RSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287 + L +LF + ++ T + LS IL + Sbjct: 595 -NLNSPKQLGDFLFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYRENMKL 653 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L+ L + + DGR+ + TGR + QN+P Sbjct: 654 KSTYLDALPKYICPRDGRIHTQFHQ-MLTATGRLASQDPNLQNIP--------------- 697 Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R+ + S ++ AD + IE R++A ++G+ AF G Sbjct: 698 ---------VRTEQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREG 748 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T A+ + P D+V R K + G+ Sbjct: 749 RDIHTETAARVYGIPRDQVDAVMRRAAKTVN--------------FGIIYGIS------- 787 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + + + V +DL Sbjct: 788 -----------------------AFGLSQRLGCPRGEAATLIENYFTQFPVVKSFMEDLV 824 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + RR + ++ T S Sbjct: 825 HKAEQAGYAETLL--------------------------GRRRMIPEINSAN---KTIKS 855 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPY 641 R +Q + D++ M + K ++L +HDE++ + Sbjct: 856 AAERTAI------NTPIQGTAADMIKIAMIHVDKLLKGTRSRLILQIHDELLVDLHRDEL 909 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M G+P+ E + Sbjct: 910 DLIPKIEEAMVSALPLPNGVPILVEARTGGNW 941 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 340 bits (871), Expect = 6e-91, Method: Composition-based stats. Identities = 95/697 (13%), Positives = 193/697 (27%), Gaps = 152/697 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDL 57 +++ D ET S PL +A + A++W+ E + +L Sbjct: 369 NRVCFDTETTSLDPL----------EAELVGIAFSWEAHKGFYLPVPEGREAAGEVLEEL 418 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + +T+ V N ++ + GI + T + ++ Sbjct: 419 RPFFESDTIEKVGQNLKYDIKVLSTY-GIPVRG-PLFDTMLAHYLINPDMRHNMDVLAET 476 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN++ GK + + EY D + T +L Sbjct: 477 YLNYTPVPISDLIGKKGKNQLS--------------MRDVPLEDQTEYAVEDADITLQLA 522 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + P + E L + + G +D + KL + ++ + L I Sbjct: 523 QLFGPELREAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKI 582 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI--DLVDM---SEGTLKSILSHSNITQLAKDLIL 279 + + L LF + T + +LS ++L Sbjct: 583 YEAAGEEF-NIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVL 641 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + ++ L + V+ GR+ A TGR S QN+P Sbjct: 642 DYRGLTKLKSTYVDALPQQVAPSTGRVHTDYMQTVA-ATGRLSSNNPNLQNIP------- 693 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R I +L+ AD + IE R++A ++ ED Sbjct: 694 -----------------IRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDT 736 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I++F GEDI+ T A+ F P+++V++EQR+ K + + Y Sbjct: 737 MIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQT 791 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +L + + ++ + + ++ D E ++G R + + Sbjct: 792 NLSRTEAKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGR---------RRYLKDI 842 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + ++ + Sbjct: 843 NGSNAVVRGAAERNAVNAPIQGSAADII---------------------KIAMIRIYQKL 881 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N T + +V + Sbjct: 882 REGNFKTR---------------------------MLLQVHDE-----------LVFDCY 903 Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + S M A +PL + + + Sbjct: 904 RGEADTVSALIKSEMESAYELA--VPLVVDMGFGETW 938 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 88/533 (16%), Positives = 162/533 (30%), Gaps = 87/533 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MP 54 ID ET S P+ A + + + + Sbjct: 349 AIDTETDSLDPMR----------ARLIGISLSVTPGEAAYLPLAHAYPGAPEQLPMAEVL 398 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L +L + + N+ ++R +F G+ I T + + P SL + Sbjct: 399 ERLRPWLENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSL 456 Query: 113 -CLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK A + Y D + T Sbjct: 457 VSRHLGRDDTLSYEQVCGKGAK---------------AITFDQVALDVATRYSGEDADLT 501 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ +RL P E + + Q I G +D DL+ + + + L Sbjct: 502 LQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 + +L G + + LF + + + T + +L Sbjct: 562 EAQAFELAGGAF-NLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEEVLEKLAEDYPLPR 620 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +IL+ + S L + ++ D GR+ A TGR + QN+P Sbjct: 621 VILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVA-VTGRLASNDPNLQNIP---- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G + +D + IE R++A ++ + Sbjct: 676 --------------------VRTAEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQD 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AFA GEDI+ T A+ F +VS +QR + KV+ L Y Sbjct: 716 AGLLAAFAAGEDIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMS-----AFGLAR 770 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 L L++ + + F + ++ + E + + G L Sbjct: 771 NLGLERSAAQLYIDRYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDI 823 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 107/721 (14%), Positives = 184/721 (25%), Gaps = 177/721 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 + ID ET A ++ + + A Sbjct: 372 YIAIDTETVIEP---GAPFDVDALRSRLVGLSIAVAPGEAYYLPFAHRRDDGSGNLALLA 428 Query: 50 -------------------------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 S + L L D +V +A N+ ++ ++ ++ Sbjct: 429 GDTGTGIVGRRINAGAPEPVNLPPFDSDACAPLRAMLEDPSVTKIAQNAKYDLLVL-RSS 487 Query: 85 GIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSI 140 G+ + + T + + L L + GK Sbjct: 488 GVRVAGVGF-DTMLASYVLDPGRRSHGLDLLALEQLGHTMTAYDTLVGKGKTQL------ 540 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLL 190 V +Y DV+ T L +L P+ + E L + Sbjct: 541 ---------PFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSV 591 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G IDLD L+ A ER ++++ I + LR LF G Sbjct: 592 LAEMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAGEEF-NINSNPKLRAILFEKLG 650 Query: 251 IDLVDMS---EGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 + + + T S+L + L++ ++ L V R Sbjct: 651 LPVKKKTATGPSTDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRL 710 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T S TGR S QN+P +R Sbjct: 711 HTSYSQTVSATGRLSSHDPNLQNIP------------------------IRRELGRDIRR 746 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G +L+ AD + IE RVLA ++ + + AF G DI+ T A F P++ V+ Sbjct: 747 GFVPREGWRLLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTS 806 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 E RA K + A Y GA L + + FE + Sbjct: 807 EMRARAKTINFATIYGQGAHAL-----SRQLRITNAEAKAFIETYFERFAGVRGFLDQCV 861 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + L R + + ++ V Q + Sbjct: 862 VDARARGYVETLFKR---------RRYIPELKERNFNIRAFGERVAQNAPIQGSAADLI- 911 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 ++ +V+ A+ Sbjct: 912 --------------------KIAMINVRNAIDAEGLASR--------------------- 930 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 + E+V E P ++ L M +PL Sbjct: 931 ------MLLQVHD-----------ELVFELPVEEADTLSALVKREMEGAA--VLNVPLLV 971 Query: 666 E 666 E Sbjct: 972 E 972 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 339 bits (870), Expect = 8e-91, Method: Composition-based stats. Identities = 109/696 (15%), Positives = 199/696 (28%), Gaps = 151/696 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 + D ET + + A + ++++ +E Sbjct: 377 KAVAFDTETTTLNEM----------DAELVGLSFSYRKGLAYYIPLSEDRSEAIQTLEIF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 ++ E V VAHN F+ + ++ G + T + + Sbjct: 427 REFFEKEDVSKVAHNLKFDYKILQQY-GFSLKGL-LFDTMIAHYLLNPDGKHVIDYLSEI 484 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+ + GK + + Y D + T +L+ Sbjct: 485 YLNYKPVALESLIGKKGKNQL--------------TFRSLTVEEQTNYAAEDADITWQLY 530 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + P E L + + G +D + + + + + L+ I Sbjct: 531 EVFAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVALDEKWLAQESIDLENDLRGLEAKI 590 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLIL 279 +L D + L LF +D ++ T + +L + IL Sbjct: 591 FELADVEF-NVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQKLSAKHDIIKYIL 649 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L + D R+ + A TGR + QN+P Sbjct: 650 EYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTA-ATGRLASVNPNLQNIP------- 701 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 L +R +A+ GKK++ AD + IE R++A I+ E+ Sbjct: 702 -----------------IRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENM 744 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I AF NGEDI+V+T A+ F+ P+++V+K QR K + + Y G A Sbjct: 745 ILAFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQG-----AFALAEQTG 799 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 L + S FE++ + + + + E + ++ L + + Sbjct: 800 LSRTEAKQMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHL---------KDIN 850 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + +L + S Sbjct: 851 SANFVVKAHAERNAVNAPIQGSAADVI---------------------KLAMIKIDQKLS 889 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 LN L M L VHDE++ E P Sbjct: 890 ELN----------------------------LKTKML----------LQVHDELLFEAPQ 911 Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V L M +PL E + Sbjct: 912 EEVEMVMKLIKTEMESAFE--TKVPLLVEVGVGDNW 945 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 339 bits (870), Expect = 8e-91, Method: Composition-based stats. Identities = 106/697 (15%), Positives = 191/697 (27%), Gaps = 154/697 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPS--DL 57 D ET S PL A + + A + + P Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411 Query: 58 LQY------LRDETVMCVAHNSLFERIL-FKKTLGIDIPSKRWICTSVLARTNGL---PS 107 L D + + HN F+ L I T + A Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 470 Query: 108 SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L K K ++ PY A+ F Y K Sbjct: 471 GMDKLAESILGVKTIRFKDLV-KQGQNFSDIPLKEACPYAAEDAD-----ITFRFYKKFL 524 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++L D E + L + +G + + + + + +E + ++DI + Sbjct: 525 PLLKKNNLEKLF--FDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYR 582 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L+ LF + ++ T S+L + IL+ A Sbjct: 583 LVGHEF-NIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKILDYRA 641 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + +TL + +GR+ + G + TGR S QN+P Sbjct: 642 LAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIP------------ 688 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G +R A G+ L+ AD + IE +LA ++ + ++AF Sbjct: 689 ------------IRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFN 736 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D++ T + F I VS++ R I K + G+ Sbjct: 737 TGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINF--------------GVMYGMS----- 777 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A ++ + KA+ A + GV + Sbjct: 778 -------------------------AFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAN 812 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + + RR + Sbjct: 813 VCQEAEQRGYVETLM--------------------------GRRRYLPAINSKNKVEKAG 846 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 ++ +Q + DI+ M K I+L VHDE++ E Sbjct: 847 AERI---------AVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAA 897 Query: 638 DTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++ V +L M +PL+ + Sbjct: 898 ESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSW 932 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 89/697 (12%), Positives = 179/697 (25%), Gaps = 154/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLL 58 D ET PL A + ++A + S + Sbjct: 349 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPANSVEVAKVVERFS 398 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K + + T + + Sbjct: 399 PALQNPKSLKIGQNIKFDILVLRKY-NVKVAG-PLFDTMIAHYLLNPELRHGMDYLAETY 456 Query: 116 LNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + G K + + EY D + T +L Sbjct: 457 LKYQTVHIEELIGPKGKNQLSMRNV---------------PVEQIAEYAAEDADITLKLK 501 Query: 175 KRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P E L + + G +D + + + KL++++ Sbjct: 502 NYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQEV 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +L + T + LF + T + +L +L Sbjct: 562 YELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGKLL 620 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ L E ++ G++ + + TGR S QN+P Sbjct: 621 EYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV-TSTGRLSSTNPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I N AD + IE R++A ++G+ Sbjct: 673 -----------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +G DI+ T AK + P+++V+ + R K + Y L Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERL 770 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + F + + + + E + + L + Sbjct: 771 GIPRSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFL---------PDI 821 Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + SA + + + + ++R L S L D Sbjct: 822 NSHNAVVRGYAERNAINAPIQGSAADIIKLAMVRI--YERFEEEGLKSKMILQVHDELNF 879 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 Y +++ IVL Sbjct: 880 NVYKEE------------------------AEVVK-----------KIVL---------- 894 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL A+ E + + Sbjct: 895 ------------EEMENVMK--LQVPLIADCGEGENW 917 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 338 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 104/700 (14%), Positives = 198/700 (28%), Gaps = 154/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP--------S 55 L ID ET S +A + + AW P Sbjct: 449 LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 498 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L + V HN F+ I+ ++ G+ + T V L + Sbjct: 499 ILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDDL 556 Query: 113 C-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ + K GK I D P Y DV+ Sbjct: 557 AQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSP-----------------YACEDVDV 599 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L + E L + + G ++ D + K+ E ++ Sbjct: 600 PIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIAD 659 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276 L + + L + LF G+ ++ ++ T +LS + + Sbjct: 660 LRALVFSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAE 718 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L ++ ++ L + + GR+ + + A TGR S QN+P Sbjct: 719 HVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVA-ATGRLSSSEPNLQNIP---- 773 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R+ A G L+ AD + IE RVLA +G Sbjct: 774 --------------------IRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 813 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ I A+ + DI+ A+ +V+ + R I K + + Y Sbjct: 814 DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLA 868 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + F+ + E+ + + ++G E+ Sbjct: 869 KTLGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREI--------- 919 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 K + + LP S+R ++ + Sbjct: 920 -------KGVRDLAK--------------------------------LPESKRRSLTEPE 940 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + + ++ E + Q D+ + ++ Sbjct: 941 RIAINMPIQGTAADLIKLAMLRVHEQLKQ---SDLQARLLLQIHDE-----------LLL 986 Query: 635 ETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+PD ++ T+ MT +PLK + + + Sbjct: 987 ESPDEELDALSDTIREAMTSVME--LDVPLKVDVAHGRTW 1024 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 191/691 (27%), Gaps = 137/691 (19%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMP 54 M + + D ET + L + + A++++ D+ E + Sbjct: 405 MKQTAVCFDTETTGLKAL----------EVELIGIAFSYETGKGYYVSFPEDQAETQRIL 454 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGL--PSSLKN 111 D + E + + HN ++ + +P K T + ++ Sbjct: 455 EDFRPFFESE-IEKIGHNLKYDIKVLSTY---KMPVKGKLFDTMIAHYLINPDMRHNMDV 510 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 LN+ GK + P + T A F E Sbjct: 511 LAETYLNYQPISIAELIGKKGKNQLSM--RSVPLKEQTEYAVEDADITFQLKQLFTGELE 568 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +L D E L + + G ++ D + +L + + +L++ I + Sbjct: 569 NGNVTKLFN--DIELPLVSVLTAMEIEGINVNTDFLKELSVALTADIDRLEKSIYEQAGE 626 Query: 231 IIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285 + L + LF + ++ T + ILS+ I Sbjct: 627 EF-NIASPKQLGIVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEHDIIKDIQEYRQYK 685 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L V+ GR+ A TGR S QN+P Sbjct: 686 KLQSTYVDALPNEVNPKTGRIHTQYMQAVA-ATGRLSSNNPNLQNIP------------- 731 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR + L+ AD + IE R++A ++ E+ I AF Sbjct: 732 -----------IRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAALSEEENMINAFK 780 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 NGEDI+ +T AK FN P+++V+++QR+ K + + Y DL + Sbjct: 781 NGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVS-----AFGLSNQTDLSRSE 835 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + +E + + +++ D E + ++ L R Sbjct: 836 AKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAV--------- 886 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + G + +L +++ Sbjct: 887 VRNGAERNAVNAPIQGSAADII---------------------KLAMINIQKRFEKEGFR 925 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 + + +V +T Sbjct: 926 SR---------------------------MLLQVHDE-----------LVFDTHKDELEI 947 Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + + M +PL E + + Sbjct: 948 IKPIIKYEMEHAFK--MSVPLDVEVGIGENW 976 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 108/717 (15%), Positives = 191/717 (26%), Gaps = 171/717 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL------ 57 + ID ET S + A +A + + A L Sbjct: 328 VAIDTETDSLK----------ARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAA 377 Query: 58 ----------------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 LRD V+ V HN F+ + D+ T VL+ Sbjct: 378 PPVANIEDKAAALALLGDLLRDPGVLKVGHNLKFDLHVLANAGLSDVAP--VDDTMVLSY 435 Query: 102 TNG---LPSSLKNACL-ALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQA 155 + L + GK I + Y A+ Sbjct: 436 VLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLR 495 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 L + E + + L +R + + + G R+D + L A+ Sbjct: 496 LYLLLR-DRLLKEHMVRVHETL------DRPMVRILTDMEAAGVRVDALRLKALSGDFAK 548 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNI 270 L++ I L + L LF + + T +L Sbjct: 549 RMGDLEDQIHALAGHAF-NVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQLAA 607 Query: 271 T-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 +L+ + + L + GR+ T + TGR S Q Sbjct: 608 EGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTV-TATGRLSSNDPNLQ 666 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P A +R IA+ G L+ AD + IE R+ Sbjct: 667 NIP------------------------VRSEAGRKIREAFIAAPGHLLISADYSQIELRL 702 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A +AG +AFA G+DI+ T ++ F P++ + R K + Sbjct: 703 VAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAIN------------ 750 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ A + + Sbjct: 751 --FGIIYGIS------------------------------AHGLAQQLGVGRPEAAAFIT 778 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 A+ A+ + + + E V + P RR+ Sbjct: 779 AYFARFPEIRSYMETVKEEARTVG--------------------------WVATPFGRRI 812 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGY-- 622 ++ R+ +Q + DI+ M + G Sbjct: 813 PIPGIQDKNPAARAFA---ERQAINAP------IQGGAADIIKRAMIALPPALEQAGLAT 863 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG-----LPLKAEGYEAKRY 673 ++L VHDE++ E P+ + L +M + +PL+ + A + Sbjct: 864 RMLLQVHDELIFEAPEAEAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASW 920 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 97/697 (13%), Positives = 192/697 (27%), Gaps = 152/697 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----L 57 ++ D ET S + +A I A +++ E ++ L Sbjct: 356 KEICFDTETTSLNEM----------EAQIVGLALSYEIHKGYYILFPEDFSLAKQWFLLL 405 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL- 114 + +E+++ + N ++ + GI++ + + T + ++ Sbjct: 406 KPFFENESILKIGQNLKYDFKILANY-GIEVKGE-FFDTMIAHYLLNPDMRHNMDLLSEA 463 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L +S + GK + +L EY D + T +L Sbjct: 464 YLGYSPISIETLIGKKGKGQL--------------TMRAVPAELQKEYAVEDTDVTLQLK 509 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +PL + E L + + G R+D + +L + IA + L++ I Sbjct: 510 HVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTI 569 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSILSHSNITQLAKDLIL 279 + L LF + T + +LS +L Sbjct: 570 F-SQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVL 628 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 A + L V+ GR+ T + TGR S QN+P Sbjct: 629 EFRALQKLQSTYIEALPREVNPHTGRIHTTFMQAV-TATGRLSSNQPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R + L+ AD + IE R++A ++ ED Sbjct: 681 -----------------IRTPRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDH 723 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF G+DI+ +T AK F P++ V+KEQR+ K + + Y + Sbjct: 724 MIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVS-----AIGLSQQT 778 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 L + + ++ + + +++ E ++G R V Sbjct: 779 SLSRSQSKELIDTYYQTYPKLKTYIEKQIFFAREHGYVQTILGR---------RRYLPDV 829 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + ++ + Sbjct: 830 YSRNQVVRGAAERNAVNAPIQGSAADII---------------------KIAMVRIAQRI 868 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + ++ + P Sbjct: 869 QKEGLATR---------------------------MLLQVHDE-----------LLFDVP 890 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M + +PL E + Sbjct: 891 KKELEVAKALIREEMENAYTLI--VPLIVEIGTGNNW 925 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 98/693 (14%), Positives = 194/693 (27%), Gaps = 139/693 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPS 55 +L +D ET S P QA + + + + + + Sbjct: 345 ELAVDTETNSLDP----------HQADLVGISLSSKVGKACYIPIGHKSSKCINKNDVIK 394 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L D +V + N F+ I+ K GI++ T +++ ++ Sbjct: 395 KLKPLLEDPSVKKIGQNIKFDFIVLFKQ-GIEM--TSMEDTMLMSYVLDAGKNRHNMDTL 451 Query: 113 CL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K GK I + Y A+ F Y K Sbjct: 452 SEIHLGHKTISFKEIVGTGKKEINFSDVEIERAKDYAAEDAD-----ITFRLYKKFSKNL 506 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E + + E+ L + + G +D + L ++ K L+++I K++ Sbjct: 507 KLEKMINIYEI--FEKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLEKEIFKISK 564 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLAS 284 + L ++ I + ++ T S+L L+L+ Sbjct: 565 KDF-NIASPKQLGEIIYNDLKIAELKKTKKGSFATSASVLEDLAFKGHKFPKLVLDWRQV 623 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 S ++L E ++ + + T A+ TGR + QN+P Sbjct: 624 SKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIP------------- 670 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + L+ AD IE R+LA +A KAF N Sbjct: 671 -----------IKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKN 719 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T ++ FN I KV ++QR K + + Y +++ + Sbjct: 720 DEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYG-----ISQYGLAKQINVSNYEA 774 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + F + + + + + + + G R+ G+ ++ Sbjct: 775 EEFLDAYFAKFPEIKIYMNDTIKFCRKSGYVNNIFGR---------RSHFNGINDKNFNV 825 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + RL + S Sbjct: 826 RNFQERAAINAPIQGSASEI---------------------MRLAMIRLNKKLSDKKN-- 862 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 +Q+ + + E++ E P ++ Sbjct: 863 -----------------IQS-------KMLLQIHD-----------ELIFEVPKNNEKTM 887 Query: 645 -GTLCSLMTKNPS---WAKGLPLKAEGYEAKRY 673 + M + +PL + + Sbjct: 888 IKLIKDEMASVVKSDHHSFSIPLTVDINVGDNW 920 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 106/684 (15%), Positives = 189/684 (27%), Gaps = 146/684 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA + A A + L L Sbjct: 435 MQAELCGLALALTPNEACYIPLGHKQSGDGDGLFAAGLAPDQIGTRDALEALRPLLESPG 494 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEH 121 V+ + N F +L + + + +++ L L Sbjct: 495 VLKIGFNIKFTAVLLAQH---GLTLQNHDDVQLMSYALDAGRHAHGLDALAENWLGHKAL 551 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLI 178 G KA + + Y A+ ++ W++ E +++ L Sbjct: 552 SYGEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLT--AERMMTVYETL- 608 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +++ +I ++ + + Sbjct: 609 -----ERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAGEEL-NIGSP 662 Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHS--NITQLAKDLILNRLASSGSAILKL 292 L LF G+ ++ T SIL Q + ++ R S + Sbjct: 663 KQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRST-YT 721 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L V T A+ TGR S QN+P Sbjct: 722 DALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP--------------------- 760 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA+ G KLV AD + IE R+L+ +A AF +G DI+ T Sbjct: 761 ---VRTEDGRKIRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMT 817 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 ++ F P+ + E R K + + Y L + + F Sbjct: 818 ASEMFGVPVKDMPGEVRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAGAYIKKYF 872 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 E + + ++ + L G C +A + + Sbjct: 873 ERFPGIRDYMDATKEFCRAHGYVETLFGRKCHYPDI--KASNPSIRAFN---ERAAINAR 927 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 +G + R A V Sbjct: 928 LQGTAADIIRRAMVRMED------------------------------------------ 945 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 A++ L M L VHDE++ E PD ++ + +M Sbjct: 946 -----------ALAAKQLSAQML----------LQVHDELIFEVPDDEVAATLPVVQQVM 984 Query: 652 TKN--PSWAKGLPLKAEGYEAKRY 673 P+ +PL+ + A + Sbjct: 985 QDAPFPAVLLSVPLQVDARAADNW 1008 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 178/699 (25%), Gaps = 171/699 (24%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQ 59 D ET + P A + AW+ Q A+ + L Sbjct: 375 DTETNNLDP----------RHARLVGIGCAWEPGVAYYLPLAHQQGSNLETDAVVAALTP 424 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 Y +D V N+ ++ ++ + G+ + + + + +L L Sbjct: 425 YWQDRERPKVLQNAKYDWLVLRNY-GVALAGIAF-DPMLASYVLDPEGKHNLMTLAQNHL 482 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + K YC D T L Sbjct: 483 QITMGSYEALVPKGQ------------------TIDAVEIAAVSRYCGEDAAVTLRLVPV 524 Query: 177 LIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + + +RG RID + +L + + ++ + L+++ Sbjct: 525 LQAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAY 584 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILN 280 L + L LF G+ + T ++L + IL+ Sbjct: 585 TLAGSKF-NLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEKLRDDHPIVEAILS 643 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ L V R+ + TGR S QN+P Sbjct: 644 YRTLAKLKSTYVDALPLLVDPRTDRVHTDFNQTV-TTTGRLSSSNPNLQNIP-------- 694 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 S +R + G LV AD + IE R+LA + E + Sbjct: 695 ----------------VRTSFSRRIRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLL 738 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G ++ Sbjct: 739 EAFQT-------------------------------------GGDVHTLTARLLLGREEV 761 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ + FA + + T E KA+ ++ V Sbjct: 762 TSEE---------RRLAKIINYGVVYGMGARRFARETGVSATEAEDFIKAFYRRYPAVFG 812 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + RR + +R + Sbjct: 813 FMEQTRRMAVEQGYVETLLGRRRYFRGLGQLNQRDRE----------------------- 849 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSE 635 +R +Q + DI+ M + ++L VHDE+V E Sbjct: 850 ------GALRAA------FNAPIQGTAADIIKIAMVRLEQTLAGRRTRLLLQVHDELVFE 897 Query: 636 TPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 P V L M +PLK E + Sbjct: 898 MPPEERPEVEPLIRSGMENALDLL--VPLKVELNAGPNW 934 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 98/709 (13%), Positives = 184/709 (25%), Gaps = 169/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 + +D ET + A + + A Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLP 395 Query: 53 ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106 + + L L D++V+ + N ++ + ++ GI+I + T V++ Sbjct: 396 LPLVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAP--YDDTIVMSFDLDAGQSL 452 Query: 107 --SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 + A LN K G + EY Sbjct: 453 AGHGMDEAARVHLNHVCISFKDVCGTGRSQ---------------ISFAEVPLDKATEYA 497 Query: 164 KRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L++ E R L + + G ++D + + +L Sbjct: 498 AEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGIKVDREALSRLSAEF 557 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHS 268 L+ +I L + T L LF G + + + Sbjct: 558 TAGIAALEGEIHALAGQPF-AIGSTQQLGAILFDKMGYKGGRKGKSGAYSTDVTILEQLK 616 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 +L+ S + L ++ D GR+ + GA +TGR S Sbjct: 617 AQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGA-QTGRLSSTDPNL 675 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R +A G ++ AD + IE R Sbjct: 676 QNIP------------------------IRTEVGRQIRHAFVAEPGNVILAADYSQIELR 711 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 + A +A +AFANGEDI+ T + F +V+++ R K + A+ Y Sbjct: 712 LAAHMADVPALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG----- 762 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 L++ + +E + + ++ + L G Sbjct: 763 ISRWGLAGRLEISADEAQDMISRYYERFPGISLYITDTIEKARSRGYTETLFGRK----- 817 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + +G + Sbjct: 818 ----TWFPRIKAPVQHERQGAERAAINAPIQGTSADII---------------------K 852 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + + + M L Sbjct: 853 RAMARMGPALAAEGLHRVK---------------------------ML----------LQ 875 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ + +M P +PL E + Sbjct: 876 VHDELVFELPEGDVEHAGAVIRRVMEGAAEPIVKLSVPLGVEIGHGSSW 924 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 109/707 (15%), Positives = 202/707 (28%), Gaps = 171/707 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------AM 53 L ID ET P+ A + ++ + Sbjct: 317 LAIDTETTGTDPMR----------ADLVGVSFCLKEGKAFYLPVGHHYLGVPAQVSWPDA 366 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L L D+ V+ V N ++ + K+ G+ + + T + + +L Sbjct: 367 RDVLKDVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGISF-DTMIASYVINPGLRQHNLD 424 Query: 111 NAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LN K GK AR + + EY D + Sbjct: 425 ALAQRYLNHKMISYKDVVGKGKNARGFEEVS---------------LEKACEYSCEDADM 469 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L + E L + + G +ID L + A+E K+ Sbjct: 470 TFRLRRILAKQIRDEKNEALFNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQ 529 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLA 274 +++ I + L LF + + + T +L + Sbjct: 530 VEKKIQADAGMEF-NLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRI 588 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL + + L+ L V+ R+ + A TGR S QN+P Sbjct: 589 AREILRFRSLAKLKSTYLDALVRMVNPETKRVHTSFNQTVA-ATGRLSSSDPNLQNIP-- 645 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 G A +R +A +GK LV AD + IE RV A + Sbjct: 646 ----------------------IRGDAGKNIRKGFMAGSGKILVAADYSQIELRVFAHYS 683 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + + AF +DI+ T + +V+ E R I K + Sbjct: 684 QDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINF--------------GI 729 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ Q+ S+ + + A + A+ + Sbjct: 730 IYGMGPQKLSEELS------------------------------ISKEAAQDYINAYYDR 759 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++GV + + E + RR D+ Sbjct: 760 YKGVKRFKEKAIETALEKGYVTTLFN--------------------------RRRYLPDI 793 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 + + + + ++ +Q + D++ + M ++L Sbjct: 794 SHNNNRIRSEAERM---------AVNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKMLLQ 844 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ + + M +PLK + + + Sbjct: 845 VHDELLLEVPEEEADDLINMIREEMEGVYP--LRVPLKVDIGKGLNW 889 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 185/658 (28%), Gaps = 151/658 (22%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAM--PSDLLQYLR---DETVMCVAHNSLFERI-LF 80 A I A++ + + L + L H++ R + Sbjct: 347 SAGILGLAWSAEPGSGGYL---AGEELQPADKLTRILDTVLWTKGWVCFHDAK--RTDIL 401 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 + LG P + T + A S + I + Sbjct: 402 LRRLGNK-PVRAGFDTMLAAYLLDPSVSNLDLAAL---------------SIKYLGQELS 445 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 Y A +L ++ E L D E L + + G + Sbjct: 446 PGEDYRSFCAQADIILRLVPVLHEKLAELNM-----LDLYFDVEMPLLHILADMEFSGVK 500 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + + + ++ E ++ DI +L + T L LF G+ ++ ++ Sbjct: 501 LDKEYLEAMSVDLSTEIDRITGDIYRLAGEEF-NINSTRQLGTILFEKLGLPVIKKTKTG 559 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 T +L +L+ ++ L ++ G++ T + Sbjct: 560 YSTDVEVLETLAERHEIVARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFNQTV-TA 618 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R + G Sbjct: 619 TGRLSSTEPNLQNIP------------------------IRMEEGRRIRKAFVPSEPGWI 654 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + IE R+LA ++G++ ++AF N EDI+ T A+ F +++V+ E R+ K + Sbjct: 655 ILSADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAV 714 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y + + + + F + + + E Sbjct: 715 NFGIVYG-----ISDFGLAKNISVSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYV 769 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L+ R +L +++ Sbjct: 770 TTLLNR---------RRYLPDILSPNRNIRSF---------------------------- 792 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 G+ + +NT +Q + DI+ M Sbjct: 793 -------------------GERTAMNTP------------------IQGSAADIIKLAMV 815 Query: 616 NATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 ++L VHDE++ E P V + M +PLK + Sbjct: 816 RVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIVRECMENTVK--LTVPLKVD 871 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 191/707 (27%), Gaps = 165/707 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------- 50 ID ET S + A + + ++ Q Sbjct: 357 FAIDTETNSLDTMV----------ANLVGISLSYRPGEAFYIPIGHQNKSDPSIKKQLKL 406 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---S 107 + S + YL D TV V N ++ +F K I T +++ + Sbjct: 407 KDVLSVIKPYLEDPTVKKVGQNIKYDYRIFLKH---GIQMNSIEDTMLMSYSLDAGKNRH 463 Query: 108 SLKNACL-ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + LN K G K+ + + +Y Sbjct: 464 GMDLLSELHLNHKTISFKDVAGIGKSQVTFDFVDI-----------------EQAKDYAC 506 Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L+K + E+ L + ++ + G +ID +++ KL + Sbjct: 507 EDADITLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFE 566 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSN 269 E + L++ I K+ + L ++ I ++ + + ++ Sbjct: 567 IEIQNLEKKIFKIAKEEF-NIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLEDLAS 625 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+LN S +TL +++ + T A+ TGR + QN Sbjct: 626 QGHEFPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQN 685 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +RS ++ KL+ AD + IE R+L Sbjct: 686 IP------------------------IKNIEGKEIRSAFVSDKNSKLISADYSQIEMRIL 721 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A + KAF N EDI+ T ++ F+ + KV ++ R K + + Y Sbjct: 722 AHMGDVKELKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYG-----IS 776 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + S F + + + L C Sbjct: 777 SYGLAKQISVSNSEAENFLKSYFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCH----- 831 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + L RL Sbjct: 832 ----FPNINDKNHTLRTFQERACINAPIQGTAADL---------------------LRLA 866 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + S S ++Q VH Sbjct: 867 MIQIDKKISAKEIPASL--------------LIQ------------------------VH 888 Query: 630 DEIVSETPDTPYFSV-GTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 DE++ E + SV + M P +PL + K + Sbjct: 889 DELLLECKEKDVSSVQQKIAHEMENASEPLVKFSIPLTVDVKSGKNW 935 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 99/687 (14%), Positives = 200/687 (29%), Gaps = 134/687 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 + D ET PL A I + ++A ++ + + L Sbjct: 366 KQFAFDTETDGLNPLT----------ASIVVASFAPEEGEAYYLPLPQDFDEACAILQPL 415 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +R+ ++ +A N+ F++ L + G+ + T V +L Sbjct: 416 DALMRNSEILKMAQNAKFDQKLLARY-GVS-SATPLFDTLVAHYLIAPDQRHNLDTLAEQ 473 Query: 115 ALNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + E K R Y A+ V+ Y + +E Sbjct: 474 YLGYRTIAYSDLSEKKNFDLRRDVAEELLVDYAAEDADVVR-----RLYPLLREKLEQEQ 528 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + + G ++D+ + ++ E + + ++ ++ I G Sbjct: 529 QEKLF--WEVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIF-HWAGHSF 585 Query: 234 SSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + LF G+ + T + +LS IL+ Sbjct: 586 NVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKILDYRGLKKLI 645 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L E V DGRLR + + TGR S QN+P Sbjct: 646 GTYTEALPELVYPDGRLRTSYNQAV-TVTGRLSSSDPNLQNIP----------------- 687 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +RS + + + AD + IE R++A + ++ IKAF GED Sbjct: 688 -------IRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGED 740 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ +T A+ +N ++V+ QR+ K + Y L++ + Sbjct: 741 VHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYG-----ISAYGLSQRLNIDPSEASSL 795 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 +S FE++ ++ + + + L+G R + + + Sbjct: 796 ISSYFENYPAVRAYMDECVQKARKLGYTETLLGR---------RRYLPDINSRSATVRQF 846 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 ++ + N Sbjct: 847 AERNAVNAPIQGTAADLI---------------------KVAMIRIDAKMRERN------ 879 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 + M + VHDE+ + + L Sbjct: 880 ----------------------MKSRMI----------MQVHDELNFDAYLPEVDELRAL 907 Query: 648 C-SLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL+ E + Sbjct: 908 VHQEMCQAIP-NLRVPLEVEIGVGSSW 933 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 106/697 (15%), Positives = 190/697 (27%), Gaps = 154/697 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPS--DL 57 D ET S PL A + + A + + P Sbjct: 370 AYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 419 Query: 58 LQY------LRDETVMCVAHNSLFERIL-FKKTLGIDIPSKRWICTSVLARTNGL---PS 107 L D + + HN F+ L I T + A Sbjct: 420 KDAQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGIS-ANLFDTMIAAWLLDPARSSY 478 Query: 108 SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L K K ++ PY A+ F Y K Sbjct: 479 GMDKLAESILGVKTIRFKDLV-KTGQNFSDIPLNEACPYAAEDAD-----ITFRFYKKFL 532 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++L D E + L + +G + + + + + +E + ++DI + Sbjct: 533 PLLKKNNLEKLF--FDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYR 590 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L+ LF + ++ T S+L + IL+ A Sbjct: 591 LVGHEF-NIASPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDPVPAKILDYRA 649 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + +TL + +GR+ + G + TGR S QN+P Sbjct: 650 LAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIP------------ 696 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G +R A G+ L+ AD + IE +LA ++ + ++AF Sbjct: 697 ------------IRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFN 744 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D++ T + F I VS++ R I K + G+ Sbjct: 745 KGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINF--------------GVMYGMS----- 785 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A ++ + KA+ A + GV Sbjct: 786 -------------------------AFRLASSLRIPRKRADEFIKAYFATYSGVSGFMAQ 820 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + + RR + Sbjct: 821 VCQEAEQRGYVETLM--------------------------GRRRYLPAINSKNKVEKAG 854 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 ++ +Q + DI+ M K I+L VHDE++ E Sbjct: 855 AERI---------AVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAA 905 Query: 638 DTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++ V +L M +PL+ + Sbjct: 906 ESEREKVMSLVKEKMEGVIK--LSVPLRVSIESGMSW 940 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 337 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 93/705 (13%), Positives = 183/705 (25%), Gaps = 170/705 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 D +T S P+ QA + + A Sbjct: 380 YFSFDTKTISLDPM----------QAKLVGFSLALQPGKAAYVPLEHVAEEENLLGGGRI 429 Query: 50 -----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 + L L ++ V+ + N ++ ++ K+ +I + T +L+ Sbjct: 430 VPQIETQKALALLKPILENQAVLKIGQNIKYDWLVMKQY---NIVMCSFDDTMLLSYALE 486 Query: 104 --GLPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + L K + + Sbjct: 487 AGISTHGMDVLSKRWLGHKPISYKDLTHSG---------------RKIVSFAQVDLKQAT 531 Query: 161 EYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T L++ L P +R L + + +RG +D ++ +L Sbjct: 532 LYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEERGILVDRQILSRLS 591 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKSILS 266 +AQ L+E+I +L + L LF G+ T L Sbjct: 592 GELAQAALNLEEEIYQLVGEKF-NIASPKQLGDILFGKMGLLGGAKTKSGQWSTSAQTLE 650 Query: 267 HS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 L + +I R + + L + GR+ + TGR S Sbjct: 651 ELAAEGHILPRKIIDWRQ-LTKLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSS 708 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +AS G L+ AD + Sbjct: 709 EPNLQNIP------------------------VRTAEGRKIRKAFVASKGYLLLSADYSQ 744 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA +A +AF G+DI+ T ++ F ++ ++ E R K + + Y Sbjct: 745 IELRILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGI 804 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + + FE + E + + + + G Sbjct: 805 SP-----FGLASQLGISRKEASDYIQLYFERFPGIEDYMERTKIFARHHGYVETIFGRRI 859 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + + Sbjct: 860 H---------YPEIKTAKSQIRAFNERAAINAPIQGSA---------------------- 888 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 + + L +ER + + Sbjct: 889 ---------ADIIRRAMIQMENALEKERLSA-----------------KMLLQVHD---- 918 Query: 624 IVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKA 665 E++ E P + + + +M P+ + +PL+ Sbjct: 919 -------ELIFEVPKSESTKTAILIKKVMENATMPALSLSVPLEV 956 >gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 108/703 (15%), Positives = 200/703 (28%), Gaps = 144/703 (20%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSD 56 +S + D ET L A I + D++ E + + S Sbjct: 356 ISVVAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSP 405 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL 114 L ++DE V+ VAHN+ F+ + + G+ + T + SL Sbjct: 406 LKDLMQDERVLKVAHNAKFDLEVLTRY-GLP-EAHPLYDTMLAHYLIDADQGHSLDELAG 463 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + K P + +L +Y D T L Sbjct: 464 GLLRYDTIRYKDLA----------------PQESFALRTDVDPKLLCDYASEDAYVTLRL 507 Query: 174 FKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L + E L + + RG +D++ + + ++ + + +L+++I Sbjct: 508 YHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEI 567 Query: 225 VKLT-DGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 + G+ + LF I + ++ T + L LI Sbjct: 568 QSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALI 627 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L+ + ++ L + DG+L + + TGR S QN+P + Sbjct: 628 LDYREARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGR 686 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 L + A G L+ AD + +E RV+A ++ + Sbjct: 687 PLRRAFVADPYYTPRLSACTPVDHTHEE----PIGAVLLSADYSQVELRVMAHLSQDPAM 742 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I +F +G+DI+ T AK F ++V+ R+ K + + G+ Sbjct: 743 IHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGIT 788 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 SQ + + K + A + Sbjct: 789 PYGLSQR------------------------------LNIPVGEAAELIKEYFATFTHIQ 818 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + RR ++ + Sbjct: 819 AFMNEAIALATERGYTETAFGRRR-----------------------------QLRNLRT 849 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEI 632 R +Q + DI+ M + +VL VHDE+ Sbjct: 850 ARGAQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDEL 903 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRY 673 V V L M W + +PL E K + Sbjct: 904 VLNVYLDELDRVTALVREAMEGA--WPECSVPLVVEIGTGKDW 944 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 110/683 (16%), Positives = 189/683 (27%), Gaps = 141/683 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-------- 56 D ET PL + + + + + Sbjct: 376 AFDCETTGLNPLYDS----------LVGFSLSLKAGTGIYVPLKAPAPELGEQPFAVMPL 425 Query: 57 --LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPS 107 + L ++ + V HN F+ + + R T + A L Sbjct: 426 AAAKKLLARLWNNKELTLVLHNGKFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSF 485 Query: 108 SLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L+N A L K K T A Y Sbjct: 486 GLENLTEAQLGLQGLDYKDVVPKGC------TFAAVSLPQATAYAAEDADFTLQLYHVYK 539 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + L E L L + +G + + + E +A + + +I K Sbjct: 540 PALEQANLTTLFETL--EMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLARDEAEIYK 597 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L+ LF + ++ T S+L IL+ A Sbjct: 598 LVGHPF-NIASPKQLQEVLFTERKLPTGKKTKTGYSTDISVLEELAAIDELPAKILDYRA 656 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S+ + L ++GR+ + G + TGR S QN+P Sbjct: 657 SAKLKSGYADALPLLADANGRIHTSFIQTG-TATGRLSSRDPNLQNIP------------ 703 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G +R A++G KL+ AD A IE +LA + ++ +KAF Sbjct: 704 ------------IRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFR 751 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D++ T A FN P++ V + R I KV+ + Y A L + + Sbjct: 752 QGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLAN-----QLRISRTE 806 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 T F + + +++ E + L+G R + + + Sbjct: 807 AADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGR---------RRYIRAINSRNQT 857 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + + + Sbjct: 858 QRAAAERIAINTPIQGSA-------------------------------ADIVKTAMLHV 886 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 L R Q +S ++L VHDE++ E PD+ S Sbjct: 887 DRALKR-------------QHLSA---------------HLLLQVHDELILEAPDSEVDS 918 Query: 644 VGT-LCSLMTKNPSWAKGLPLKA 665 V L M A +PL+ Sbjct: 919 VKALLKQEMEHVVKLA--VPLRV 939 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 107/699 (15%), Positives = 187/699 (26%), Gaps = 156/699 (22%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPS 55 L V QA +T A A + Sbjct: 440 LEAVATSIDPMQAELTGVALALGPNDACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDALD 499 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 L L + V F +L + + + +++ L Sbjct: 500 ALKPVLESAGIAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSHGLDAL 556 Query: 113 CLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168 + L + H G K I G + Y RA+ ++ ++ Sbjct: 557 SESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERADVSLRLARVLKPRLVAGSM 616 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +++ L ER L + + RG ID ++ +L AQ +++ +I +L Sbjct: 617 T--AVYETL------ERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELA 668 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLA 283 G + L LF G+ ++ T +L IL Sbjct: 669 -GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKKILEWRQ 727 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L V T A+ TGR S QN+P Sbjct: 728 VSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP------------ 775 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A+ G KLV AD + IE R+L+ +A KAF Sbjct: 776 ------------VRTEDGRKIRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQ 823 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +G DI+ T ++ F P++ + E R K + G+ Sbjct: 824 DGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS----- 864 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + + K + + G+ + Sbjct: 865 -------------------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDE 899 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + R+ Y D+K + Sbjct: 900 TRDFCRAHGYVTTLF--------------------------GRKCHYPDIKASNPSIRAF 933 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETP 637 R Q + DI+ M K ++L VHDE++ E P Sbjct: 934 ---NERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVP 984 Query: 638 DTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 + + + +M P+ +PL+ + A + Sbjct: 985 EAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1023 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 193/689 (28%), Gaps = 156/689 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSA--------------------MPSDLLQYLRDET 65 QA + A + + + L L Sbjct: 455 MQAELCGIALSLGPNDACYIPLGHRQTGDGSGLFAAGLAPDQLGARDVLDALRPLLDSAG 514 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121 + + N F + G+ + +++ L + L + H Sbjct: 515 LAKIGFNIKF-TAVLLAQHGVTLR--NIDDVQLISYVLDAGRGSHGLDALSESNLGHTLH 571 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLI 178 + G KA IA + Y R++ ++ W++ E +++ L Sbjct: 572 VLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLV--AERMMAVYETL- 628 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +++ +I +L G + Sbjct: 629 -----ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELA-GEDINIGSP 682 Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293 L LF G+ ++ T +L IL+ S + Sbjct: 683 KQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTD 742 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L V + T A+ TGR S QN+P Sbjct: 743 ALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 780 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R +A+ G +LV AD + IE R+L+ +A KAF +G DI+ T Sbjct: 781 --VRTEDGRKIRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTA 838 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F P++ + + R K + G+ Sbjct: 839 SEMFGVPVEGMPSDIRRRAKAINF--------------GIIYGIS--------------- 869 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + K + + G+ + + Sbjct: 870 ---------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGY 914 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + R+ Y D+K + R Sbjct: 915 --------------------------VETLFGRKCHYPDIKASNPSIRAF---NERAAIN 945 Query: 594 GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPY-FSVGT 646 Q + DI+ M K ++L VHDE++ E P+ ++ Sbjct: 946 ARL------QGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDELIFEVPEDEVTATLPV 999 Query: 647 LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL+ + A + Sbjct: 1000 VSHVMQDAPFPAVILNVPLQVDARAADNW 1028 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 99/683 (14%), Positives = 189/683 (27%), Gaps = 156/683 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTE--------------------QSAMPSDLLQYLRDETVMCV 69 + A A + A + L L D+++M V Sbjct: 364 LVGLALAVEPGQAGYLPLRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKV 423 Query: 70 AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLAL-NFSEHLTKM 125 A ++ L + I T +L+ +L L K Sbjct: 424 AQDAKAAMKLLGRH---GIALAPVDDTHLLSYALNSGLHGHTLDTLSDRLLGHRPIELKS 480 Query: 126 E--EGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 GK+ PY A+ ++ WQ + R +++ L Sbjct: 481 VVGTGKSARTFDRVPVEAVTPYAAEEADIVLRLWQALKQQLFRKQVT--RVYETL----- 533 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 ER L + + G R+D D + ++ +Q+ L+ ++ +L + L Sbjct: 534 -ERPLIPVLAGMERAGIRVDRDTLSRMSNAFSQKMAGLEAEVYELAGREF-NLGSPKQLG 591 Query: 243 MYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF G+ + T +L IL+ S ++L Sbjct: 592 EILFDELGLPGGKKGKTGAYGTGADVLEDLATEHDLPGRILDWRQISKLKSTYTDSLQGY 651 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + R+ + GA TGR + QN+P Sbjct: 652 IQPETSRVHTSYSQAGA-ATGRLASTEPNLQNIP------------------------VR 686 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A GK LV D + IE R+LA +AG D +AF +G+DI+ T ++ F Sbjct: 687 TEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAATASEMF 746 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 N P+++++ + R K + G+ Sbjct: 747 NVPLEEMTPDVRRQAKAINF--------------GVIYGISGF----------------- 775 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 A ++ + + + G+ + Sbjct: 776 -------------GLARSLRIPREEAQGFINRYFERFPGIRDYMDETVAFAKEHG----- 817 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + R++ + + R Sbjct: 818 ---------------------FVQTLFGRKIHTP----EINAKGPGAGFARRAAINAP-- 850 Query: 598 TENIVQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 +Q + D++ M ++L VHDE++ E + + V +M Sbjct: 851 ----IQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELLFEVEEGAVEALVAAAREVME 906 Query: 653 KN--PSWAKGLPLKAEGYEAKRY 673 P +PL + + + Sbjct: 907 AAAMPVVQFTVPLVVDAGQGTNW 929 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 106/699 (15%), Positives = 201/699 (28%), Gaps = 160/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 +D ET S +A + +++ + E + L Sbjct: 379 FSVDTETTSLDTF----------EAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLKP 428 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALN 117 L + + N ++ ++ K G+++ + T + + +L + AL+ Sbjct: 429 LLENPEIGKTGQNLKYDILVLKNY-GVELQPVEF-DTMLASYVLDPESRHNLDDMA-ALH 485 Query: 118 FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 S K +E GK+ I F Q +Y +D + T +L Sbjct: 486 LSRQTVKYDELVGTGKSAIGIFEVEP-----------------QKLSDYACQDADITLKL 528 Query: 174 FKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L + E L + + +G ID + + KL + +E L E Sbjct: 529 RGELAAKLEATPELLEVCRTLEFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTE 588 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + G + L LF + + ++ T +L + +L Sbjct: 589 RIHEAA-GETFNIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVL 647 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + + + GRL + + TGR S QN+P Sbjct: 648 EYRSLQKLKGTYIEALPKLLHAATGRLHTSFNQS-ITATGRLSSSNPNLQNIP------- 699 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R I S L+ AD + IE RV A ++G+ Sbjct: 700 -----------------IRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPM 742 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF N EDI+ T F+T D+V+ + R K + + Y + L Sbjct: 743 LIEAFRNHEDIHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYG-----IQPFGLSQRL 795 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + Q + + S ++ + L+G R + Sbjct: 796 GIPQKEAKEIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGR---------RRYVPDL 846 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 ++ + V Sbjct: 847 NSPNGNIRKAAERVTMNTPIQGTAADIIKY------------------------------ 876 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + T + +L ER +++ + DE++ ETP Sbjct: 877 -AMCTISRRLKEER------LNSVM-----------LLQVH-----------DELLFETP 907 Query: 638 DTPYFSVGTLCS-LMTKNPSWA--KGLPLKAEGYEAKRY 673 + L M S + +P++ E K + Sbjct: 908 ADEQSRLTELVEKCMVDAASKCGVRNVPVEVETGVGKNW 946 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 99/690 (14%), Positives = 191/690 (27%), Gaps = 151/690 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDL 57 + D ET + A A I ++A ++ + + Sbjct: 323 VAFDTETNALD----------AYNAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEA 372 Query: 58 LQYLRDETVMCV-AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACL 114 + L+ + N ++ + + G+ + + T ++A S+ L Sbjct: 373 KEALKKLFKHKIVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDTLAK 431 Query: 115 AL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 N K K + P AW Y K L Sbjct: 432 RFFNHDMVKFKDVVSKN------ENFSHVPLDKACEYASEDAWMTLKLYNKLHDMLEPRL 485 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 L + E L + G +ID L + L +I L D Sbjct: 486 ---LEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHEIFTLCDAQF- 541 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L LF G+ V ++ T +++L+ + IL Sbjct: 542 NLNSTQQLGTVLFEQLGLPPVKKTKTGYSTDENVLNELLDKHPSIAKILEYRELYKLRST 601 Query: 291 KLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + S GR+ + G + TGR S QN+P Sbjct: 602 YIEPLLKLSKESPLGRVHTSFIQTG-TSTGRLSSKDPNLQNIP----------------- 643 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 VR +A G L+ D + IE R+LA + ++ +KAF +G+DI Sbjct: 644 -------VKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDI 696 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T K F ++ + +R++ K + L Y G Sbjct: 697 HYETALKLFG---EQEAASKRSVAKSINFGLLYGMGP----------------------- 730 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + +++ A + ++ E Sbjct: 731 ---------------------KRLSETLGISMAEAKRYIESYFATFPTIKAYVMEVAEQA 769 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + +R + ++ + Sbjct: 770 KTTGYVETLLGRKRFFDFEHANAMQYAGYLR----------------------------- 800 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 + + Q + D++ M ++L +HDE++ E ++ S Sbjct: 801 -------EAVNTVFQGSAADLIKLSMNKIMATLIHDEAKLLLQIHDELIFEVVESQAQSF 853 Query: 645 G-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + +A +PLK K + Sbjct: 854 ALEAQKVMEEI--YALRIPLKVSIAMGKNW 881 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 197/700 (28%), Gaps = 154/700 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP--------S 55 L ID ET S +A + + AW P Sbjct: 397 LAIDTETTST----------HARGCDLVGISIAWQPGEAAYIPVRAPDGDPAINELIVIE 446 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 L L + V HN F+ I+ ++ G+ + T V L + Sbjct: 447 TLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQLGGITM-DTMVADYLLNSGGRNHGLDDL 504 Query: 113 C-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ + K GK I D P Y DV+ Sbjct: 505 AQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSP-----------------YACEDVDV 547 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L + E L + + G ++ D + K+ E ++ Sbjct: 548 PIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIAD 607 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276 L + + L + LF G+ ++ ++ T +LS + + Sbjct: 608 LRALVFSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAE 666 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L ++ ++ L + + GR+ + + A TGR S QN+P Sbjct: 667 HVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVA-ATGRLSSSEPNLQNIP---- 721 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R+ A G L+ AD + IE RVLA +G Sbjct: 722 --------------------IRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSG 761 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ I A+ + DI+ A+ +V+ + R I K + + Y Sbjct: 762 DEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSP-----FGLA 816 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + F+ + E+ + + ++G E+ Sbjct: 817 KTLGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREI--------- 867 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 K + + LP S+R ++ + Sbjct: 868 -------KGVRDLAK--------------------------------LPESKRRSLTEPE 888 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + + ++ E + Q D+ + ++ Sbjct: 889 RIAINMPIQGTAADLIKLAMLRVHEQLKQ---SDLQARLLLQIHDE-----------LLL 934 Query: 635 ETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+PD ++ + MT +PLK + + + Sbjct: 935 ESPDEELDALSDMIREAMTSVME--LDVPLKVDVAHGRTW 972 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 102/699 (14%), Positives = 192/699 (27%), Gaps = 158/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------M 53 + +D ET S + QA + + A + + Sbjct: 375 VALDTETTSLDEM----------QASLVGISMALAPGVACYIPLAHRGPDSAEQLPKREV 424 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111 + +L+D + H++ ++ +F G+ + + T + A L + Sbjct: 425 LERMRAWLQDPARPKLLHHAKYDAHVFAN-EGVALAGIQ-DDTMLQAYVLESHRGVGLND 482 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + GK A + G Y D + T Sbjct: 483 LAQRYLGRGGITYEELCGKGAKQIG---------------FDEVAVEQAGHYACEDADFT 527 Query: 171 RELFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L L P E + + + G ++D + + + QE +L Sbjct: 528 LQLHHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQL 587 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF + +V + T + +L+ Sbjct: 588 EQRAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRLAQDYPLPQ 646 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L ++ GR+ A TGR + QN+P Sbjct: 647 VLLEYRGLSKLKSTYTDKLPRMINARTGRVHTHYSQA-AVVTGRLASSDPNLQNIP---- 701 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR +A +G LV AD + IE R++A ++ + Sbjct: 702 --------------------VRTEAGRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDD 740 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AFA G+DI+ T ++ F +D+V +QR K + L Y G Sbjct: 741 ANLQQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGV-----FGLAS 795 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + F + + + + + + G +L Sbjct: 796 NLGITRDAAQAYIDRYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQL---------P 846 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G ++ V+ Sbjct: 847 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 885 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 AT I+Q ++L E Sbjct: 886 WLDAERLATR--------------MIMQ-------------VHDE---LIL--------E 907 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD +V L LM +PL AE + Sbjct: 908 VPDGELDAVRARLPELMCGVAR--LRVPLVAEVGVGPNW 944 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 107/700 (15%), Positives = 198/700 (28%), Gaps = 144/700 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET L A I + D++ E + + S L Sbjct: 359 VAFDTETDGLDALC----------AGIVGMSLCADEQQAYFIPLPESAEEAAHILSPLKD 408 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 ++DE V+ VAHN+ F+ + + G+ + T + SL L Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRY-GLP-EAHPLYDTMLAHYLIDADQGHSLDELAGGLL 466 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + K P + +L +Y D T L+ Sbjct: 467 RYDTIRYKDLA----------------PQESFALRTDVDPKLLCDYASEDAYVTLRLYHA 510 Query: 177 LIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L + E L + + RG +D++ + + ++ + + +L+++I Sbjct: 511 LHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQSY 570 Query: 228 T-DGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 + G+ + LF I + ++ T + L LIL+ Sbjct: 571 SSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKTGNYVTNEETLLPLRSLHPVVALILDY 630 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++ L + DG+L + + TGR S QN+P + L Sbjct: 631 REARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPLR 689 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + A G L+ AD + +E RV+A ++ + I + Sbjct: 690 RAFVADPYYTPRLSACTPVDHTHEE----PIGAVLLSADYSQVELRVMAHLSQDPAMIHS 745 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F +G+DI+ T AK F ++V+ R+ K + + G+ Sbjct: 746 FLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPYG 791 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 SQ + + + K + A + Sbjct: 792 LSQRL------------------------------NIPVGEAAELIKEYFATFTHIQAFM 821 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + RR ++ + Sbjct: 822 NKAIALATERGYTETAFGRRR-----------------------------QLRNLRTARG 852 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSE 635 R +Q + DI+ M + +VL VHDE+V Sbjct: 853 AQRGNEERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVLN 906 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRY 673 V L M W + +PL E K + Sbjct: 907 VYLDELDRVTALVREAMEGA--WPECSIPLVVEIGTGKDW 944 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 110/689 (15%), Positives = 189/689 (27%), Gaps = 156/689 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA + A A + L L Sbjct: 456 MQAELCGIALALAPNDAAYIPLGHRQTGDGSGLFAAGLAPDQLGAREALDALKPLLESAG 515 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121 + + N F + GI + +++ L + L + H Sbjct: 516 LAKIGFNIKF-TAVLLAQHGITLR--NIDDLQLMSYALDAGRGSHGLDALSESNLGHTLH 572 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLI 178 G KA I + Y RA+ ++ W++ E +++ L Sbjct: 573 ALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLV--AERMMAVYETL- 629 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +++ +I +L G + Sbjct: 630 -----ERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELA-GEDINIGSP 683 Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293 L LF G+ ++ T +L IL+ S + Sbjct: 684 KQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTD 743 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L V + T A+ TGR S QN+P Sbjct: 744 ALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 781 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R IAS G KLV AD + IE R+L+ +A KAF +G DI+ T Sbjct: 782 --VRTEDGRKIRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTA 839 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F P++ + E R K + G+ Sbjct: 840 SEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS--------------- 870 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + K + + G+ + + Sbjct: 871 ---------------AFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGY 915 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + R+ Y D+K + R Sbjct: 916 --------------------------VETLFGRKCHYPDIKASNPSIRAF---NERAAIN 946 Query: 594 GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 Q + DI+ M K ++L VHDE++ E PD + + Sbjct: 947 ARL------QGSAADIIRRAMGRMEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPV 1000 Query: 648 CS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 +M P+ +PL+ + A + Sbjct: 1001 VRHVMQDAPFPAVLLNVPLQVDARAADNW 1029 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 100/693 (14%), Positives = 197/693 (28%), Gaps = 147/693 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56 + ID ET I ++A D + ++ + D Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIDKDKCMNL 399 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113 + L E + + HN +E + + +G I + T V A ++ + Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMM-RAIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L+++ A D Y C A+ F Y T Sbjct: 458 IAYLSYNTIKYADLTDNAKKTLLDAPLKDVVEYACEDADV-----TFRFYECFAPLLKTH 512 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + + G I + + L + + +K E I K Sbjct: 513 NLEDLFFNI---EMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYKEAGEE 569 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L LF GI ++ T + +L+ + + +L + Sbjct: 570 F-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLK 628 Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L+ ++ GR+ + + TGR S QN+P Sbjct: 629 NTYLDVFPTLINEKTGRIHASFNQTV-TATGRLSSSEPNLQNIP---------------- 671 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G +R+ I G L+ AD + IE R+LA + + ++AF N +D Sbjct: 672 --------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNNDD 723 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T K ++ + V+ R I Sbjct: 724 IHRKTAMKIYSVSKEHVTASMRNIA----------------------------------- 748 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + E K + + + V +++ E Sbjct: 749 ---------KIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEEVVEE 799 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + R S + + A ++ Sbjct: 800 VRNKG--------------------------FVRTMCGRIRDLSKTINSSNAM--ARNEA 831 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641 R ++Q + D++ M K IV+ VHDE+V E + Sbjct: 832 ERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEA 885 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 T+ +M + +P+ + ++ + Sbjct: 886 DKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSW 916 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 109/714 (15%), Positives = 190/714 (26%), Gaps = 180/714 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY------------------AWDDEPVKLW 45 L ID ET S PL QA + + A ++ Sbjct: 317 LVIDTETTSLDPL----------QAELVGISLTLAAPGSDESEAKASRTAAGENGACWYL 366 Query: 46 DRTEQ--------SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + + +P L L D+ + + HN ++ + + D+P Sbjct: 367 PIAHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRH---DLPLAP 423 Query: 93 -WICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T + + L L L R + + Sbjct: 424 PLADTMIASYLIDPSRRSHGLDVLSEEL--------------LQRRLTSFAEVTDRDRRP 469 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRG 198 A A Y DV ATR L++ P E L + + G Sbjct: 470 EAFAHVAPAAAAAYSCEDVAATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVG 529 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D ++ +L +QE ++L I +L + L LF + ++ Sbjct: 530 ILLDGQVLKELAAEFSQELERLSSKIYQLAGVEF-NINSPRQLGEVLFERLKLPHGRKTK 588 Query: 259 -----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 T L I+ + S ++ LS ++ DGR+ + Sbjct: 589 GKTGYSTDIRELERLAAYHDLPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFNQT 648 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P +R IA+ Sbjct: 649 V-TATGRLSSSNPNLQNIP------------------------VRTQEGRRIRGAFIAAP 683 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G + + AD + I+ RVLA + + ++AF +DI+ T A+ F V+ + R + Sbjct: 684 GHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVA 743 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y L + V FE + ++ + +Q Sbjct: 744 KTINFGIIYGMS-----AFGLAEQLRCSRKEAQVFIDRYFELYRGVKTFMEEIVEQARRD 798 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 L+ R + + K E Sbjct: 799 GFVRTLLKR---------RRQLPEINSSNKLRREFAERTAINTPIQGTAADII------- 842 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 +L + N T E Sbjct: 843 --------------KLAAIACDRELRRKNFNT---------------------------E 861 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 + HDE++ E P+ +VG L M +PL+ Sbjct: 862 ALLQI-----------HDELIFEVPEDEQAAVGKLVQQAMENVME--LTVPLRV 902 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 200/701 (28%), Gaps = 146/701 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET L A I + D++ E + + S L + Sbjct: 359 VAFDTETDGLDALC----------AGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKE 408 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGL--PSSLKNACL-A 115 ++DE V+ VAHN+ F+ + + +P R T + SL Sbjct: 409 LMQDERVLKVAHNAKFDLEVLTRY---GLPEARPLYDTMLAHYLIDADQGHSLDELAGGL 465 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + K P + +L +Y D T L++ Sbjct: 466 LRYDTIRYKDL----------------SPLEIFALRTDVDPKLLCDYASEDAYVTLRLYQ 509 Query: 176 RLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + + RG +D++ + + ++ + + +L+++I Sbjct: 510 ALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIVLDIEALQRSRQELLESVLRLEKEIQS 569 Query: 227 LT-DGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + G+ + LF I + ++ T + L LIL+ Sbjct: 570 YSSRGLNLKVNSPKQIGELLFDELQIMEKPRKTKTGSYVTNEETLLPLRSLHPVVALILD 629 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ L + DG+L + + TGR S QN+P + L Sbjct: 630 YREARKLLNTYIDPLPKMCYPDGKLHTSYNQAV-TATGRLSSSNPNLQNIPIRSDLGRPL 688 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + A G L+ AD + +E RV+A ++ + I Sbjct: 689 RRAFVADPYYTPRLSACAPVDHTHEK----PIGAVLLSADYSQVELRVMAHLSQDPAMIH 744 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +F +G+DI+ T AK F ++V+ R+ K + + G+ Sbjct: 745 SFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFGI--------------NYGITPY 790 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 SQ + + K + A + Sbjct: 791 GLSQR------------------------------LNIPVGEAAELIKEYFATFTHIQAF 820 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + RR ++ + Sbjct: 821 MNEAIALATERGYTETAFGRRR-----------------------------QLRNLRTAR 851 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVS 634 R +Q + DI+ M + +VL VHDE+V Sbjct: 852 GAQRGNAERNAINAP------IQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDELVL 905 Query: 635 ETPDTPYFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRY 673 V L M W + +PL E K + Sbjct: 906 NVYLDELERVTALVREAMECA--WPECSVPLVVEIGTGKDW 944 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 333 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 192/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 96/697 (13%), Positives = 177/697 (25%), Gaps = 154/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 D ET PL A + ++A + E + + Sbjct: 368 FFAFDTETDGIDPLK----------AGLVGMSFAVKENEAWYVPVPAAREEADKILAHFS 417 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-A 115 L++ + + N F+ ++ +K GI I T + + Sbjct: 418 PALQNPKSLKIGQNIKFDILVVRKY-GIRIAG-PLFDTMIAHYLLNPELRHGMDYLAETY 475 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + + G P EY D + T +L Sbjct: 476 LKYKTVRIEELIG--------------PRERKQLTMRDVPVVQVAEYAAEDADITLKLKN 521 Query: 176 RLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 P + E L + + G +D + + E + KKL+++I Sbjct: 522 YFTPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIY 581 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILN 280 +L + + LF I S T + IL +L Sbjct: 582 ELAGMKF-NINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHPVVGKLLE 640 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ L E ++ G++ + + TGR S QN+P Sbjct: 641 YRGLKKLLSTYIDALPELINPETGKIHTSYNQAV-TSTGRLSSTNPNLQNIP-------- 691 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R A AD + IE R++A ++ + Sbjct: 692 ----------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHM 735 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G DI+ T AK + P+++V+ + R K + Y L Sbjct: 736 IEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISV-----FGLAERLS 790 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + F+ + ++ + E + + L + Sbjct: 791 IPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFL---------PDIN 841 Query: 519 QLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + SA + V + + R L S L D Sbjct: 842 SHNAIVRGYAERNAINAPIQGSAADIIKVAMVRI--FNRFETEGLKSKMILQVHDELNFN 899 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 Y DE+ Sbjct: 900 VYK-------------------------------------------------DEL----- 905 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL A+ E + Sbjct: 906 ----EKVKQIVLDEMENAIK--LQVPLIADCGEGVNW 936 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 193/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + ++ + ++ + + Sbjct: 749 SDFRL------------------------------AKELRITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 333 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 95/700 (13%), Positives = 195/700 (27%), Gaps = 164/700 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LL 58 + ID ET S A + + ++ + + + + ++ Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 59 QYLRD---ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113 Q + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K + ++ Y D + T Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADITFR 490 Query: 173 LFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 LF + + E + + + G +D + + + + + +E + ++ Sbjct: 491 LFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAIEN 550 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLILN 280 +I+K + + LF + L + + T +L + + ++ Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIK 609 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L E ++ RL + + TGR + QN+P Sbjct: 610 YRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP-------- 660 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R NG + AD + IE +LA ++ ++ I Sbjct: 661 ----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLI 704 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 KAF N +DI+ T +K F +++ R I K + + Sbjct: 705 KAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSD 750 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A + + + ++ + + + Sbjct: 751 FRL------------------------------AKELGITKEEAKGFINSYFDSYPKIKE 780 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + RR Y +Y Sbjct: 781 FIINQINFVKNAGYSETILKRRR---------------------------YIKEINSNNY 813 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633 L S R +I+Q + DI+ M K I+L VHDE++ Sbjct: 814 L--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDEML 865 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+P V + +M + ++ LPL+A K + Sbjct: 866 IESPIEEENEVKKILKIMMET-AYILNLPLRANIETGKSW 904 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 333 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 92/685 (13%), Positives = 182/685 (26%), Gaps = 132/685 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 + D ET + L + + A++++ E + + Sbjct: 374 VCFDTETTGLKAL----------EVELIGIAFSYEIGKGYYVSFPENQEETKAILEEFRP 423 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACL-AL 116 + E + V HN ++ + + + K T + ++ L Sbjct: 424 FFESEMIEKVGHNLKYDIKVLSNY-NMPVKGK-LFDTMIAHYLINPDMRHNMDVLAETYL 481 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N+ GK + P D T A + E Sbjct: 482 NYHPVSITELIGKKGKNQLSM--RVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTE 539 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E L + + G +D + + +L + + +L+++I + + Sbjct: 540 LFN--KVELPLVSVLTAMEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQAGEEF-NIA 596 Query: 237 QTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF + D ++ T + ILS I Sbjct: 597 SPKQLGIVLFENMKLVDKPKKTKTGQYKTGEDILSFLAKEHKIIRDIQEYRQYKKLQSTY 656 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L ++ GR+ A TGR S QN+P Sbjct: 657 VDALPNEINKKTGRIHTQYMQAVA-ATGRLSSNNPNLQNIP------------------- 696 Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 VR + L+ AD + IE R++A ++ E+ I AF NGEDI+ Sbjct: 697 -----IRTERGREVRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIH 751 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 +T AK F I+ V++EQR+ K + + Y DL + Sbjct: 752 ASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVS-----AFGLSNQTDLSRGEAKELID 806 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +E + + +++ D E + ++ L R + G Sbjct: 807 TYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNA---------MVRSGAE 857 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + +L ++ + Sbjct: 858 RNAVNAPIQGSAADII---------------------KLAMINIHNRFIQEGFKSK---- 892 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + +V + ++ + Sbjct: 893 -----------------------MLLQVHDE-----------LVFDAHKDELETIKPIIK 918 Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL E + + Sbjct: 919 NEMENAFK--MTVPLDVEMGIGQNW 941 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 100/702 (14%), Positives = 193/702 (27%), Gaps = 163/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLL 58 ++ D ET + +A + + + L Sbjct: 314 KEICFDTETT----------HWHPLKAELVGIGFCIKQGAAWYIPMNGKLGLEKALKKLA 363 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-L 114 + + AH+ ++ + K GI + + + T + + SL Sbjct: 364 PLFENSRIGFYAHHLKYDLHILKNY-GISLANISF-DTILASYILTPHLRQHSLDALTLE 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 ++ T GK + YC DV+ T L Sbjct: 422 HFGKTKIPTSDLIGKGKNQITMLEV---------------PIEKVCAYCCEDVDYTYRLK 466 Query: 175 KRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + L + + G +D ++ L++ + + ++L+ +I Sbjct: 467 QIFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEI 526 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + D + + L LF I + T +L +L Sbjct: 527 HAIADEPF-NLKSPKQLSGILFEKMKIPPPKKTATGYSTSAEVLETLQNEYAIAKKMLEF 585 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + TL + ++ GR+ T A TGR S Q +P Sbjct: 586 RSLEKLRSSYIETLPKEINPKTGRIHPTFNQSVA-ATGRLSCQDPNLQQIP--------- 635 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399 VR G + AD + IE R+LA + + I Sbjct: 636 ---------------IRTPLGREVRKAFRPEKQGWSYLSADYSQIELRLLAHFSEDPTLI 680 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF N EDI+ T A N P+++V+KEQR Sbjct: 681 SAFENNEDIHTHTAATVLNIPLEQVTKEQRRQA--------------------------- 713 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +A + + Q + + + K + ++Q V Sbjct: 714 -----------------KAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQRYQRVKD 756 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + E + I R ++ Sbjct: 757 FVESCKEKTRKTGRAMTII--------------------------GRERPIPEIDSKNPQ 790 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIV 633 + A +L +Q + D++ + M + ++L +HDE++ Sbjct: 791 IRGAAERL---------AVNTPLQGTAADLIKKAMIVIDEKLMRGQHLGFMILQIHDELI 841 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 E PD ++ L S M + +PL + K ++ Sbjct: 842 FEIPDFEITAIEQLVISSMEGV--YQLRVPLTVDVSIGKNWK 881 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 332 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 191/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 102/701 (14%), Positives = 190/701 (27%), Gaps = 152/701 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSDLL 58 D+ET L + A + A A + + L Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LAL 116 +LR AH+ ++ ++ ++ G P + T + A G + LK L Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERA-GFPRPHIDF-DTMIAAYLLGENAVGLKELAFTKL 440 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + G+ +Y DVEAT L + Sbjct: 441 GWEMEEITELIGRGKKQL---------------TMDRAEIARVTQYACADVEATYRLVEV 485 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G ID+ + +L ++ + L+ I + Sbjct: 486 LRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYE 545 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L LF G+ ++ + +L + T + IL Sbjct: 546 LAGHPF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ 604 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ L V GR+ A TGR S QN+P Sbjct: 605 LLKLKSTYVDALPRQVHPQTGRVHTIFHQTVA-ATGRLSSSDPNLQNIP----------- 652 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-------LVVADLAGIEARVLAWIA 393 G VR IA G + L+ D + IE R++A + Sbjct: 653 -------------ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFS 699 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AFA G+DI+ T ++ F P+D V+ E R I KV+ + Y + Sbjct: 700 QDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGL 754 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + F+ + + + + E + L G R Sbjct: 755 ARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR---------RRY 805 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + +L V Sbjct: 806 LPEITSSNPARRQAAERMAVNMPLQGTAADI---------------------MKLAMIAV 844 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + + +V Sbjct: 845 HRALAERGLRSR---------------------------MLLQVHDE-----------LV 866 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E P++ + L + M++ +PL+ + + Sbjct: 867 LEVPESELATTTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 191/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGCYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVKNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 332 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 101/691 (14%), Positives = 189/691 (27%), Gaps = 148/691 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDL 57 + D ET S + A + +++ + E + + Sbjct: 331 VAFDTETDSLE----------TRSAKLVGFSFSLEGEVGYYVPVAHSYLGAGDQVSLEEA 380 Query: 58 LQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN-AC 113 + + V HN F+ + LG P R + +LA + L Sbjct: 381 RGAIEKIFSAQVVGHNLKFDLEILHGALGFY-PKGRIGDSMILAWLLDSGAPVGLDFQMK 439 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + K + + A + Y + + E + Sbjct: 440 RWFGHEMIPFEKMVKKG------ETFAQVALEEAAEYAGEDALATYRLYFRLEEELKKRG 493 Query: 174 FKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + L+ L++ E + +RG R+D + +L + ++L ++ G Sbjct: 494 CESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHAGGEF 553 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L LF + ++ T + +LS + IL Sbjct: 554 -NLNSTQQLGGVLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYRELFKLKS 612 Query: 290 LKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L+ D R F + + TGR S QN+P Sbjct: 613 TYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNPNLQNIP----------------- 655 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R IAS G L+ D + IE R+LA + + + AF G DI Sbjct: 656 -------VKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADI 708 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T K F ++ +K R I K + L Y G+ Sbjct: 709 HYETAKKIFG---EREAKAHRGIAKTINFGLIYGMGS----------------------- 742 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + ++ + ++ A V K E Sbjct: 743 ---------------------RKLSETLRISPKEAKGYIDSYFASFPTVKSFLKAQEEFA 781 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + RR + + Sbjct: 782 LEHGYTETLLGRRRYFEFQQAPEYQK---------------------------------- 807 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSETPDTPYFS 643 Y + I Q + D++ M + ++L VHDE++ E P + Sbjct: 808 --AAYLREAVNCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDELIFEAPKEHAEA 865 Query: 644 VG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PL+ + + Sbjct: 866 LARELALVMEGIHP--LRVPLQCGISLGEHW 894 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 106/704 (15%), Positives = 187/704 (26%), Gaps = 156/704 (22%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------------- 51 L V QA + A A + Sbjct: 433 TGIVALETVATSIDPMQAELIGLALALGPNDACYIPLLHKQSGDGDGLFAAGLAPDQIGP 492 Query: 52 -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PS 107 L L V V F +L + + + +++ Sbjct: 493 RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549 Query: 108 SLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYC 163 +L + L + H G K I + Y RA+ ++ ++ Sbjct: 550 ALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRL 609 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +++ L ER L + + RG ID ++ +L AQ +++ + Sbjct: 610 VAGSMT--AVYETL------ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAE 661 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLI 278 I +L G + L LF G+ ++ T +L I Sbjct: 662 IRELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKI 720 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L+ S + L V T A+ TGR S QN+P Sbjct: 721 LDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP------- 773 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A+ G KLV AD + IE R+L+ +A Sbjct: 774 -----------------VRTEDGRKIRRAFVATPGNKLVSADYSQIELRLLSEVADVPAL 816 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 KAF +G DI+ T ++ F P++ + E R K + G+ Sbjct: 817 RKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS 862 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + K + + G+ Sbjct: 863 ------------------------------AFGLANQLSIPREEAGAYIKRYFERFPGIR 892 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + R+ Y D+K Sbjct: 893 AYMDETRDFCRNHGYVTTLF--------------------------GRKCHYPDIKASNP 926 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632 + R Q + DI+ M K ++L VHDE+ Sbjct: 927 SIRAF---NERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDEL 977 Query: 633 VSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 + E P+ + + +M P+ +PL+ + A + Sbjct: 978 IFEVPEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDARAADNW 1021 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 193/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELEAI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEI 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + ++ + ++ + + Sbjct: 749 SDFRL------------------------------AKELRITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 98/702 (13%), Positives = 194/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 322 KYISIDTETSSLD----------IYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 371 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 372 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDF 427 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 428 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 469 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + E + + + G +D + + + + + QE + + Sbjct: 470 FRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELI 529 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K GI + + LF + L + + T +L + + I Sbjct: 530 ENEIIKSI-GINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENI 588 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 589 IKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 641 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 642 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEA 683 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ + R I K + + Sbjct: 684 LIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRM 729 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 730 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 759 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 760 KEFITNQINFVRNTGYSETILKRRR---------------------------YIKEINSN 792 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 793 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDE 844 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 845 MLIESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSW 885 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 193/677 (28%), Gaps = 137/677 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57 +DIET S + + A + + A+ L Sbjct: 344 ALDIETDSLDAMLANP----------VGFSLAVSPKQAAYLPLIAEGQRKFDDDAVRERL 393 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL 114 ++ +V + HN ++ + ++ + T V A + Sbjct: 394 VRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLA--FDTMVAAWLLDTTANSYGMDPLAA 451 Query: 115 -ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + K K + D TR A F Y + Sbjct: 452 SLLGYKTISFKDVVPKDGL------FQDISVETATRYAAEDADITFRFYELFRRQLKERG 505 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G + D + + ++ +++DI + G Sbjct: 506 LEKLF--FELEMPLVPILAEMECAGITLLSDRLEAYGRELEKDLGTIEDDIWQAC-GHSF 562 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L+ LF + + ++ T S+L + L+L + + Sbjct: 563 NINSTKQLQQVLFEERKLTPIKKTKTGYSTDISVLEELAREDVVPLLVLRHRSLAKLKST 622 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + V+ GR+ L G + TGR S QN+P Sbjct: 623 YVDALPKLVNPETGRIHTQLIQTG-TATGRLSSKDPNLQNIP------------------ 663 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +RS + + G + AD + IE VLA ++ + +AF +G D++ Sbjct: 664 ------IRDEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRSGGDVH 717 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T + F+ VS EQR I K + + Y L + + + + Sbjct: 718 RRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMS-----AFRLSRELGISRSRADSFIS 772 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + F + + +S + + + V L+G + K G Sbjct: 773 AYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRE---------RSIPAINSRNKTEKAGAE 823 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + +L SRR+ ++K Sbjct: 824 RIAVNTPIQGTAADIVKL------------AMLAVSRRMASEELKSK------------- 858 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLC 648 M L +HDE++ E P + L Sbjct: 859 ------------------------MV----------LQIHDELLFEVPFDEADRMEGLLK 884 Query: 649 SLMTKNPSWAKGLPLKA 665 M +PL+ Sbjct: 885 EEMESAVK--LSVPLRV 899 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 98/702 (13%), Positives = 194/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLD----------IYTARLIGISISFKEFEGYYIPIEAKGKIYIEKHYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + E + + + G +D + + + + + QE + + Sbjct: 489 FRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K GI + + LF + L + + T +L + + I Sbjct: 549 ENEIIKSI-GINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENI 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEA 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ + R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFITNQINFVRNTGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIKEKNEVEKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 97/696 (13%), Positives = 199/696 (28%), Gaps = 151/696 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQ-- 59 + D ET Y + + +++++D+ +P + + Sbjct: 336 IVAFDTETTGLD---------YEKD-KLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKD 385 Query: 60 -YLRDETV---MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113 L + + V HN F+ + L D+ + + +LA L Sbjct: 386 AALAMKKIFNSKVVGHNIKFDLHFVSRFLNDDM-LNIYSDSMILAWLINPESALGLDKLS 444 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L+ + K K + D ++ A+ + + + + Sbjct: 445 DKLLDHTMLGFKDTVKKG------ETFASVELEDASKYAAEDAYITLKLFNLFNEKLKLQ 498 Query: 173 LFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 LI S E + G R+D + + + + L + I + Sbjct: 499 DATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTIYEQAGTE 558 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + T L + LF G+ + ++ T +++LS +L Sbjct: 559 F-NINSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEYREIYKLY 617 Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + D GR+ + G + TGR S QN+P Sbjct: 618 STYIEPLLKLSLEDKEGRIHTSFVQTG-TATGRLSSKNPNLQNIP--------------- 661 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A GKKL+ D + IE R+LA + + + AF + Sbjct: 662 ---------ARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANK 712 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI++ T F ++ + +RA+ K + L Y G Sbjct: 713 DIHLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQ--------------------- 748 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + + + V ++ + + Sbjct: 749 -----------------------KKLSETLGITTKEAKEIIEKYFESFPTVKTYFRSIVD 785 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + RR Y + T+ Sbjct: 786 NSKEMGYVETLLKRRR------------------------------------YFDYETAS 809 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP 640 M Y + ++ Q + D++ M K ++L +HDE++ E Sbjct: 810 PMFRAAYDRESVNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADE 869 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +G +M +PL+A + K Sbjct: 870 AEMLGNRFKEIMENIYE--LNIPLEASMNIGDNWGK 903 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 100/693 (14%), Positives = 196/693 (28%), Gaps = 147/693 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56 + ID ET I ++A D + ++ + D Sbjct: 350 KLVCIDFETTGLDTFKDT----------IIGISFAIKSNEAFYLDLSGRTKIGKDKCMNL 399 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113 + L E + + HN +E + K +G I + T V A ++ + Sbjct: 400 VFDTLEKEDIKVIGHNLKYEYKMMK-AIGKSI-GNMYFDTMVAAYLINPTRGRYNMDDLA 457 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L+++ A D Y C A+ F Y T Sbjct: 458 IAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADV-----TFRFYECFAPLLKTH 512 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + + E L + + G I + + L + + +K E I Sbjct: 513 NLEELFFNI---EMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEE 569 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L LF GI ++ T + +L+ + + +L + Sbjct: 570 F-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLK 628 Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L+ ++ GR+ + + TGR S QN+P Sbjct: 629 NTYLDVFPTLINEKTGRIHASFNQTV-TATGRLSSSEPNLQNIP---------------- 671 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G +R+ I G L+ AD + IE R+LA + + ++AF N +D Sbjct: 672 --------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDD 723 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T K ++ + V+ R I Sbjct: 724 IHRKTAMKIYSVSKEHVTASMRNIA----------------------------------- 748 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + E K + + + V ++ E Sbjct: 749 ---------KIINFSIIYGKTAFGLSKELGIKKKEAEDFIKGYSSTYSRVKPFCDEVVEE 799 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + R S + + A ++ Sbjct: 800 VRNKG--------------------------FVRTMCGRIRDLSKTINSSNAM--ARNEA 831 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641 R ++Q + D++ M K IV+ VHDE+V E + Sbjct: 832 ERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEA 885 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 T+ +M + +P+ + ++ + Sbjct: 886 DKAMTIMKEIMEHSVK--ANVPIIVDIHKGNSW 916 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 107/722 (14%), Positives = 186/722 (25%), Gaps = 177/722 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------ 49 + +D ET + A QA + + A Sbjct: 357 RLVAVDTETSALD----------AMQADLVGVSLAIGPNQACYIPLGHFNEGGGGDDMFA 406 Query: 50 -------QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + L L + V+ V N ++ + + I T +++ Sbjct: 407 EKPQQIETEVALAKLKPLLESDAVVKVGQNIKYDLNVLARH---GIAVAPIEDTMIVSFA 463 Query: 103 NGLP---------SSLKNAC-LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRA 150 + L + K GK I + Sbjct: 464 LDAGRSQDGIGGGHGMDELAQRHLGHTCLTFKEICGTGKKAIPFGEVPIDRAT------- 516 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYR 200 EY D + T L+ L P E R L + + G + Sbjct: 517 ----------EYAAEDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIK 566 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---- 256 +D + L E A+E +L+ +I ++ L LF G Sbjct: 567 VDRQQLAALSERFARETARLEGEIHEIAGQEFT-VGSPKQLGDILFDKMGYKGGKKGKSG 625 Query: 257 SEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314 T +S+L + T +L + + L +A++ R+ + GA Sbjct: 626 QYSTDQSVLEKLDATGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTNRVHTSYSLVGA 685 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 +TGR S QN+P +R +A G Sbjct: 686 -QTGRLSSTDPNLQNIP------------------------IRTEIGREIRQAFVADEGN 720 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R+ A +A +AFA GEDI+ T + F V ++ RA K Sbjct: 721 VLLAADYSQIELRLAAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKT 776 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + A+ Y L ++ F + + + + + E Sbjct: 777 INFAILYG-----ISRWGLAGRLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGY 831 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 L G + + +G + Sbjct: 832 SQTLFGRK---------TWFPRINSKNQAERQGSERAAVNAPIQGTSADIIKRAMAR--- 879 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 L + +K D ++Q Sbjct: 880 ---------MGPALAEAGLKPD-----------------APDGVRMLLQ----------- 902 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAK 671 VHDE+V E P+ + +M P+ +PL E K Sbjct: 903 -------------VHDELVFEMPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVEIGTGK 949 Query: 672 RY 673 + Sbjct: 950 NW 951 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 117/705 (16%), Positives = 199/705 (28%), Gaps = 161/705 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPS 55 + D ETR PL + + A + + + Sbjct: 388 VAFDTETRGMNPLRD----------DLVGLSLATVPGRAWYIPVGHTTGEMQLPRDRVIA 437 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + D VAHN+ F+ + ++ G+ + + T + A +LK+ Sbjct: 438 ALRSFFADPARPKVAHNAKFDIEVLERA-GMPVAGLSF-DTMLAAGLLDKRRNLKDLAFY 495 Query: 116 ---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L GK + P TR A + + R Sbjct: 496 ELELAEPLDAIGDLIGKGKNQ---VTFAEVPIARATRYAAADADMTLRLQPALEAKL-RA 551 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + G +D+ + L E + +E ++++ I + Sbjct: 552 AGSLADMFYRLEMPLVPVLVRMEQSGILLDVPYMRALGERMGRELAQIEQQIFAIAGKPF 611 Query: 233 RSSRQTYALRMYLF------LITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNR 281 + L LF TG++ + L+ + ++ T +LIL Sbjct: 612 -NINSGDQLSEVLFGPKINLPTTGLERTRTGRYSLTAQALEEL--QASDTTGIIELILRH 668 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L V+ GR+ GA TGR S QN+P Sbjct: 669 RRLSKLKSTYVDELPALVNPETGRVHTDYNQLGA-ATGRLSSNSPNLQNIP--------- 718 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR IA+ G L+ AD + IE RVLA I G+ I+ Sbjct: 719 ---------------TRTEEGREVRRGFIAAPGHVLIAADYSQIELRVLAHITGDPNLIQ 763 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 F G DI+ T A+ F + V K QR I K + + G+ Sbjct: 764 TFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVI--------------YGISPF 809 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +Q + + + + + Sbjct: 810 GLAQR------------------------------LGISREQARNLIDSLFNQFPRIRDY 839 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + EG ++ RR D++ Sbjct: 840 ---IDRTLETGRNEG-----------------------YVQSLFGRRRPMFDLRTS---- 869 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL------TVHDEIVS 634 RE + +Q+ + DI+ M L VHDE++ Sbjct: 870 GPRRQAAEREAI------NHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIF 923 Query: 635 ETPDTPYFSVGTLC-SLMTKN-----PSWAKGLPLKAEGYEAKRY 673 E P+ V L M P +A +PL+ E + + Sbjct: 924 EAPEAEVDEVVALVRERMEGVLSDMHPPFA--VPLRVEIEKGSNW 966 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 101/685 (14%), Positives = 185/685 (27%), Gaps = 151/685 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDL 57 + D ET A + ++A+++E + Sbjct: 336 VAFDTETTGLD----------TRSAKMVGFSFAFEEEKAYYVPVAHSYLGVGPQVSLEAA 385 Query: 58 LQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNAC- 113 + + V N F+ L L ++ P + T +LA S L Sbjct: 386 KKAIEKLMRHRIVGQNLKFDLSLLYSHLEME-PIEPEADTMILAWLLDPGSRVGLDILAQ 444 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE- 172 L + K K + + AW Y + + Sbjct: 445 KFLGYQMKSFKETVKKG------EDFSSVALEEAAFYAAEDAWATRQLYFRLTELFKKGG 498 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L L + E + + G R+D + L+E ++ E +L ++I L Sbjct: 499 LEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLAGTEF 558 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + T L LF G+ ++ T +S+L + + IL Sbjct: 559 -NIKSTQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYREHQKMLS 617 Query: 290 LKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L + D GR+ T G + TGR + QN+P Sbjct: 618 TYVDPLLKLAEKDPEGRIHTTFVQTG-TATGRLASKDPNLQNIP---------------- 660 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 VR +A G +L D + IE R+LA +G+ +AF GED Sbjct: 661 --------VRSELGRRVRRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGED 712 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I++ T K F A G+ Sbjct: 713 IHMATAIKLFGPE---------EAAAKRNFA--------KSINFGLLYGMGS-------- 747 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + A + + + + +A+ A V + + + Sbjct: 748 ----------------------RKLADELGITTKEAKEIIEAYFAAFPTVRSYLEQIQQQ 785 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RRV + + Sbjct: 786 AKEQGYVETLLRRRRVFDYEGASGMMKAAILR---------------------------- 817 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDEIVSETPDTPY 641 + + Q + D++ M + + G ++L +HDE++ E P+ Sbjct: 818 --------EAVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQA 869 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKA 665 M +PLK Sbjct: 870 EETAARFRHTMEHIYP--LEVPLKC 892 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 96/693 (13%), Positives = 196/693 (28%), Gaps = 147/693 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56 + +D ET I ++A D + ++ + D Sbjct: 356 KLVCVDFETTGLDVFKDT----------IIGISFAIRSNEAFYLDVSGRTNIDKDKCIDM 405 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113 + + L E + + HN +E + + + + T V A ++ + Sbjct: 406 VFETLAKEDIKVIGHNLKYEYKMM-RAINKSF-GNMYFDTMVAAYLINPTRGRYNMDDLA 463 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L+++ A D Y C A+ F Y T Sbjct: 464 IAYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDAD-----ITFRFYECFAPLLKTH 518 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + + E L + + G I + + L + + +K + I Sbjct: 519 NLEELFFNI---EMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEAGEE 575 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L LF GI ++ T + +L+ + + +L + Sbjct: 576 F-NIQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLK 634 Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L+ ++ GR+ + + TGR S QN+P Sbjct: 635 NTYLDVFPTLINEKTGRIHASFNQTV-TATGRLSSSEPNLQNIP---------------- 677 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G +R+ IA G L+ AD + IE R+LA + + ++AF N +D Sbjct: 678 --------VRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDD 729 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T K ++ + V+ R I Sbjct: 730 IHRKTAMKIYSVSKEHVTASMRNIA----------------------------------- 754 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + E K + + + V +++ E Sbjct: 755 ---------KIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEEVVEE 805 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 R S + + A ++ Sbjct: 806 VRNKGYVRTM--------------------------CGRIRDLSKTINSSNAM--ARNEA 837 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641 R ++Q + D++ M K IV+ VHDE+V E + Sbjct: 838 ERMA------LNTLIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEA 891 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 T+ +M + +P+ + ++ + Sbjct: 892 DKAMTIMKEIMEHSVK--TNVPITVDIHKGNSW 922 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 95/715 (13%), Positives = 181/715 (25%), Gaps = 171/715 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 +D ET S A + + + + + QS Sbjct: 361 FAVDTETDSLS----------ATASGLVGVSLSCAPGSGVYIPLSHQSDDGGLALSGDEF 410 Query: 52 ------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 ++L L D TV+ V N ++ +F + I + T +++ Sbjct: 411 KQIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFARY---GIRVAPYDDTMLISYVLEG 467 Query: 105 --LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L + K G ++ + E Sbjct: 468 GLHGHGMDELSELHLGHTPIPFKQVAGTG---------------KSAKSFKFVDLKPATE 512 Query: 162 YCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+ L P ER + + + G RID ++ L + Sbjct: 513 YAAEDADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQ 572 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKS 263 +++ + + + L F + + L+ Sbjct: 573 DFGVRMGEIETEAHTVAGHPF-NLNSPQQLGAIFFDEMALPGGKKTATGQWATDVKVLEE 631 Query: 264 ILSHSNITQ--LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 I Q L+L+ + + L E + T ++ TGR S Sbjct: 632 IAEKGTHDQGQRLARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLS 691 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P L +R+ +A G KL+ AD Sbjct: 692 SNEPNLQNIP------------------------IRTLEGRKIRTAFVARAGHKLISADY 727 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA I KAF +G DI+ T ++ F P++ + E R K + + Y Sbjct: 728 SQIELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIY 787 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + FE + +++ ++Q + + G Sbjct: 788 G-----ISAFGLGNQLGIDNQEAGRYIKTYFERFPGIKAYMDAAKEQVKATGYVETIFGR 842 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + Sbjct: 843 RIHI---------PDIHAKSAGQRAFAERAAINAPI------------------------ 869 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 TA + R E + + + Sbjct: 870 ------------------QGTAADIIRRAMIRMPGALE------AAGLTTTMLLQVH--- 902 Query: 622 YDIVLTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 DE++ + + +M A +PL+ E A + Sbjct: 903 --------DELIFEAPEAEVEAAKAVIVEVMKHAALPALDISVPLEVEAKAADNW 949 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 90/712 (12%), Positives = 181/712 (25%), Gaps = 175/712 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------------ 50 ++ +D ET + P+ A + + + Sbjct: 360 RIAVDTETDNVDPVR----------ANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQI 409 Query: 51 --SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-- 106 A + L L ++ + N ++ ++ K + + T +L+ Sbjct: 410 AMDAALAKLKPLLEAAHILKIGQNIKYDMVVLAKY---GVDVAPYDDTMLLSYDLDAGLG 466 Query: 107 -SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L+ K G + + EY Sbjct: 467 GHGMDELAQRHLDHGCIEFKTVCGTGKSQ---------------ISFDKVTLDVATEYAA 511 Query: 165 RDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L++ L E R L + + G ++D + + +L + Sbjct: 512 EDADVTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFS 571 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSN 269 E +L+ I L LF G+ + + + + Sbjct: 572 GEATRLEAAIHAEAGTPFT-VGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELERLAG 630 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+L+ + + L + ++ GR+ A +TGR S Q Sbjct: 631 DGVAIARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVA-QTGRLSSTDPNLQ 689 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R +A GK ++ AD + IE R+ Sbjct: 690 NIP------------------------IRSDHGRRIRDAFVAEPGKLILSADYSQIELRL 725 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 A +A AFA G+DI+ T + F +V+++ RA K + ++ Y Sbjct: 726 AAHMADVPALKDAFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSILYG-----I 776 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 L++ + F + + Q + L G L Sbjct: 777 SAWGLAGRLEVSREEAQGMIDRYFSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHL--- 833 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + + Sbjct: 834 ------PWIRSAKQGERQSAERQ------------------------------------- 850 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR----DILCEGMKNATKNGYDI 624 +N + + N A++ D+ + + Sbjct: 851 ----------AINAPIQGTSADIIKRAMVRMNP--ALAAAGLGDV--KMLLQVH------ 890 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 DE+V E + +M P +PL E + Sbjct: 891 -----DELVFELAPEQVEPASAVIRAVMAGAAEPIVRLSVPLGVEIGTGPSW 937 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 110/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET S + QA + + A + + Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111 + L +L D + H++ ++ +F G+ + T + A L + Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A L G Y D + T Sbjct: 439 LAQRFLGRSGVNYEDLCGKGAKQIG---------------FDEVAVALAGHYSCEDSDFT 483 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P E + + + G ++D + + + QE L Sbjct: 484 LQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLAL 543 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF G+ +V + T + +LS Sbjct: 544 EQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 602 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L ++ GR+ A TGR + QN+P Sbjct: 603 VLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 657 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR IA G KL+ AD + IE R++A ++ + Sbjct: 658 --------------------VRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDD 696 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AFA GEDI+ T ++ F P+ +V EQR K + L Y G Sbjct: 697 ANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLAS 751 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + F + + + + + + G +L Sbjct: 752 NLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------P 802 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G ++ V+ Sbjct: 803 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 841 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T I+Q +VL E Sbjct: 842 WLDAERLRTR--------------MIMQ-------------VHDE---LVL--------E 863 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD +V L LM + +PL AE + Sbjct: 864 VPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 329 bits (844), Expect = 8e-88, Method: Composition-based stats. Identities = 105/703 (14%), Positives = 184/703 (26%), Gaps = 154/703 (21%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------------- 51 L QA + A A + Sbjct: 433 TGIVALEAAATSIDPMQAELIGLALALGPNDACYIPLPHKQSGDGDGLFAAGLAPDQIGP 492 Query: 52 -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PS 107 L L V V F +L + + + +++ Sbjct: 493 RDALDALKPILESAGVAKVGFAIKFAAVLLAQH---GLTLRNIDDPQLMSYALDAGRGSH 549 Query: 108 SLKNACLA-LNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +L + L + H G K I + Y RA+ + Sbjct: 550 ALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARV-LKPR 608 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + +++ L ER L + + RG ID ++ +L AQ +++ +I Sbjct: 609 LVAGSMTAVYETL------ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEI 662 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLIL 279 +L G + L LF G+ ++ T +L IL Sbjct: 663 RELA-GEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKIL 721 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + S + L V T A+ TGR S QN+P Sbjct: 722 DWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIP-------- 773 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A+ G KLV AD + IE R+L+ +A Sbjct: 774 ----------------VRTEDGRKIRRAFVATPGNKLVSADYSQIELRLLSEVADVPALR 817 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 KAF +G DI+ T ++ F P++ + E R K + G+ Sbjct: 818 KAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINF--------------GIIYGIS- 862 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A + + K + + G+ Sbjct: 863 -----------------------------AFGLANQLSIPREEAGAYIKRYFERFPGIRA 893 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + R+ Y D+K Sbjct: 894 YMDETRDFCRTHGYVTTLF--------------------------GRKCHYPDIKASNPS 927 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIV 633 + R Q + DI+ M K ++L VHDE++ Sbjct: 928 IRAF---NERAAINARL------QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELI 978 Query: 634 SETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 E P+ + + +M P+ +PL+ + A + Sbjct: 979 FEVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNW 1021 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 107/689 (15%), Positives = 192/689 (27%), Gaps = 150/689 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYLR 62 + D ET S + A I ++A+++E P+ + Sbjct: 377 VSFDTETTSIDS----------KSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAA 426 Query: 63 DETV------MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC- 113 + V N ++ + K I+ P R+ T VLA + + Sbjct: 427 KAAIDSLFRGYVVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISP 485 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + K + T AW Y K L Sbjct: 486 RYLGYETVHFGDVVKKG------ETFASVELDAATIYASEDAWVTLRLYFKLKGLLEPAL 539 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 FK + E + + G +ID++++ +L + + L ++I +L G Sbjct: 540 FKL---AQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELC-GEQF 595 Query: 234 SSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF G+ T +S+L A IL+ Sbjct: 596 NINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYRELFKLQST 655 Query: 291 KLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L + +D R+R G + TGR + QN+P Sbjct: 656 YCEPLLQLALADAQNRVRSNFLQTG-TATGRLASKNPNLQNIP----------------- 697 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G + VR C +A G L+ D + IE R+LA + + + AF EDI Sbjct: 698 -------ARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFRADEDI 750 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F R I K + L G+ Sbjct: 751 HARTAISIFG----DAQPAHRTIAKSINFGLI--------------YGMG---------- 782 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + + + A + + + + Sbjct: 783 --------------------AGKLSDSLGIARAEAKGYIERYFAAFSTIKEFLQSIKSDA 822 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 D ++ RR + + + Sbjct: 823 K--------------------------ADGYVSTLFGRRRYFDFANARNNMVY------- 849 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDTPYFSV- 644 +Y + Q + DI+ + M + + ++L +HDE++ E D Sbjct: 850 --ASYEREAVNTKFQGSAADIIKKAMVDISPLLNGEARLILQIHDELIFEVRDDLAQGFG 907 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M S +PLK AKR+ Sbjct: 908 ARAQEIMQSAAS--LNVPLKTSLNIAKRW 934 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 110/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET S + QA + + A + + Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111 + L +L D + H++ ++ +F G+ + T + A L + Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A L G Y D + T Sbjct: 439 LAQRFLGRSGVNYEDLCGKGAKQIG---------------FDEVAVPLAGHYSCEDSDFT 483 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P E + + + G ++D + + + QE L Sbjct: 484 LQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLAL 543 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF G+ +V + T + +LS Sbjct: 544 EQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 602 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L ++ GR+ A TGR + QN+P Sbjct: 603 VLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 657 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR IA G KL+ AD + IE R++A ++ + Sbjct: 658 --------------------VRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDD 696 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AFA GEDI+ T ++ F P+ +V EQR K + L Y G Sbjct: 697 ANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLAS 751 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + F + + + + + + G +L Sbjct: 752 NLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------P 802 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G ++ V+ Sbjct: 803 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 841 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T I+Q +VL E Sbjct: 842 WLDAERLRTR--------------MIMQ-------------VHDE---LVL--------E 863 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD +V L LM + +PL AE + Sbjct: 864 VPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 189/707 (26%), Gaps = 173/707 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--------------EQ 50 D ET PL +A + + A E Sbjct: 367 AFDCETTGLNPL----------EAELAGFSLALKAEEAFYIPVKLPPPELQSQAPQPMPL 416 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 S+L + + + + + HN F+ + + T + A + Sbjct: 417 EKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSF 476 Query: 111 NACLALNF----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + + K K I ++ Y D Sbjct: 477 SLDSLASSLLKLQTIAYKDVVPKGKI------------------FSDVPYEQAVAYAAED 518 Query: 167 VEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T + ++ L+P E L L + G + + + + E + +E Sbjct: 519 ADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKKEELAEFSEELGKE 578 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 + +I + + L+ LF + ++ T S+L + Sbjct: 579 IIVHEREIFDIVGHEF-NIASPKQLQEVLFTELKLPTGKKTKTGYSTDTSVLEVLASEHV 637 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL A + + L +GR+ + G + TGR S QN+P Sbjct: 638 IPAKILEYRALTKLKSTYTDALPALADKNGRVHTSFIQTG-TATGRLSSRDPNLQNIP-- 694 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 A +R A GK L+ AD A IE +LA ++ Sbjct: 695 ----------------------IRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHLS 732 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AF G D++ T A F PI +V + R I K + Sbjct: 733 QDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINF--------------GV 778 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + S ++ + + Sbjct: 779 MYGMSAFRLSNA------------------------------LRIPRRQAADFIETYFKT 808 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV ++L E + RR + + Sbjct: 809 YSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQ------------------ 850 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 + R +Q + DI+ M K ++L Sbjct: 851 -----------AGAERVAI------NTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQ 893 Query: 628 VHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ +V TL M +PL+ K + Sbjct: 894 VHDELICEAPEKETETVKTLLRQEMESVVKLL--VPLRVNIESGKTW 938 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 328 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 94/702 (13%), Positives = 191/702 (27%), Gaps = 168/702 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 ID ET S A + + ++ + + + Sbjct: 341 KYTSIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKIYIEKNYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFESNPKI--IGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSSEDADIT 488 Query: 171 RELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ENEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + + TGR + QN+P Sbjct: 608 IKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTK-TATGRITSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEA 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFINSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNAGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERIAI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + +M + ++ LPL+A K + Sbjct: 864 MLIESPIEEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 177/451 (39%), Positives = 255/451 (56%), Gaps = 13/451 (2%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 4 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 63 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ R +S ++ K L + Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMK 302 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 303 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 362 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----EDIY 409 + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF D+Y Sbjct: 363 NIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLY 422 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 YAKA+ +++V+K+QR IGKV+ELA Sbjct: 423 KLAYAKAYGIEVERVTKDQRQIGKVLELACI 453 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 11/242 (4%) Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 GY GG F T A LDL + + + +A+S + + + + +++ Sbjct: 739 CGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERV 798 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 AC+ +K+ WR H W +L + ++ L +RR + Sbjct: 799 FI-ACDSLKRLWRRAHPATCDFWYELERTVRTAIATP-----QKTLYCGYLKIRRDGAWL 852 Query: 559 HIVLPSSRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 I LPS R + Y KG+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+L Sbjct: 853 RIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGN 912 Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 M GY IVLTVHDEI+SE PD+P +S + L+ P WA +PL A G+E+ RY Sbjct: 913 MPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRY 972 Query: 674 RK 675 RK Sbjct: 973 RK 974 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 93/690 (13%), Positives = 190/690 (27%), Gaps = 134/690 (19%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMP 54 M + + D ET PL A + A++W+ + Sbjct: 373 MKQPSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIAFPKEKEAAQEII 422 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 L + + + N ++ + +K I + + T + ++ Sbjct: 423 ELLRPFFEATEIEKIGQNLKYDLKVLRKY-DIVVKG-QLFDTMLAHYLINPDMRHNMDIL 480 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LN++ GK + K D P D T A E Sbjct: 481 AETYLNYTPVSITELIGKK--GKNQKSMRDVPVADQTEYAVEDADITLQLKEHFSKELGE 538 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++L +D E L + + G +D + L + + + L+++I Sbjct: 539 ANTQKLF--TDIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKNIYAEAGEE 596 Query: 232 IRSSRQTYALRMYLFLITGI-DLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + + ++ T + +LS +L + Sbjct: 597 F-NIASPKQLGEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADVLEYRGLAK 655 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V R+ A TGR S QN+P Sbjct: 656 LKSTYVDALPLQVEPATQRVHTDYMQTVA-ATGRLSSNNPNLQNIP-------------- 700 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR + L+ AD + IE R++A ++ E+ ++AF N Sbjct: 701 ----------IRTERGRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEETMMEAFKN 750 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GEDI+ +T +K F+ P+++V++EQR+ K + + Y L + Sbjct: 751 GEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVS-----AFGLSNQTSLSRGEA 805 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + +E + + + + + + + ++G R + + Sbjct: 806 KELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGR---------RRYLNAINGSNAIV 856 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + ++ ++ N T Sbjct: 857 RGAAERNAVNAPIQGSAADII---------------------KIAMINIYRKLEEGNYKT 895 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + +V VH + Sbjct: 896 K---------------------------MLLQVHDE---LVFDVH--------KDELDEM 917 Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 T + M + +PL E + + Sbjct: 918 KTMIKHEMENA--YLMDVPLDVEVGIGQNW 945 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] Length = 904 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 111/699 (15%), Positives = 193/699 (27%), Gaps = 158/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET S + QA + + A + + Sbjct: 331 VALDTETTSLDEM----------QARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEV 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111 + L +L D + H++ ++ +F G+ + T + A L + Sbjct: 381 IARLRGWLEDAGRAKLLHHAKYDTHVFAN-EGVSLAGVA-EDTMLQAYVLESHRGVGLND 438 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L S + GK A L G Y D + T Sbjct: 439 LAQRFLGRSGVNYEDLCGKGAKQIG---------------FDEVAVPLAGHYSCEDSDFT 483 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P E + + + G ++D + + + QE L Sbjct: 484 LQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLAL 543 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKD 276 ++ +L + L LF G+ +V + T + +LS Sbjct: 544 EQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQ 602 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S + L +S GR+ A TGR + QN+P Sbjct: 603 VLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQA-AVITGRLASSDPNLQNIP---- 657 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A VR IA G KL+ AD + IE R++A ++ + Sbjct: 658 --------------------VRTEAGRRVREAFIAEQG-KLLSADYSQIELRIMAHVSDD 696 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AFA GEDI+ T ++ F P+ +V EQR K + L Y G Sbjct: 697 ANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV-----FGLAS 751 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + F + + + + + + G +L Sbjct: 752 NLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQL---------P 802 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + +G ++ V+ Sbjct: 803 DIRAASGPRRQGAERAAINAPMQGTAADLI---------------------KMAMVAVQD 841 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T I+Q +VL E Sbjct: 842 WLDAERLRTR--------------MIMQ-------------VHDE---LVL--------E 863 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD +V L LM + +PL AE + Sbjct: 864 VPDEELAAVAEALPRLMCDVAT--LRVPLVAEVGMGTNW 900 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 99/679 (14%), Positives = 175/679 (25%), Gaps = 153/679 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLF 75 A + A A + + + + + L D + V H+ F Sbjct: 340 MSAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAVMGPLLADPELPKVGHDVKF 399 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLA-LNFSEHLTKMEEGKALI 132 ++ + I + + T + + L L K Sbjct: 400 CEVILLRHR-IGLVGVSF-DTMLASYLLDPEGKNQLHELAERELGAKMQTLDEVAPKRRG 457 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------D 182 RA Y + L RL P Sbjct: 458 Q-------------AQRALDEIELGEASSYGAAFADVALSLTDRLRPRLRAEKLEDLLVQ 504 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G +D + +L + E L++ ++ I + L Sbjct: 505 IELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDI-NLASPKQLE 563 Query: 243 MYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + T +L + ++L A + ++ L V Sbjct: 564 AVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLV 623 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 GR+ A TGR S QN+P Sbjct: 624 HPGTGRIHTRWGQAVA-ATGRLSSQDPNLQNIP------------------------IRT 658 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G +V AD + IE RVLA ++ + + AF G+D++V T + F Sbjct: 659 ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFG 718 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ E R K + + Y G+ ++ + Sbjct: 719 VDQAGVTAEMRRRSKTINFGVIY--------------GMGESALAKRLD----------- 753 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + A+ A+++GV + + + Sbjct: 754 -------------------ISRAEAARFIDAYFARYRGVHEFMEGTMAEAKRSESVRTLL 794 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 RR+ R R +Q R Sbjct: 795 GRRRLLPDLRSSDRMR-----------------------------RAQAERIAQ------ 819 Query: 599 ENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 +Q + D+L M + G +VLTVHDE+ E P + M Sbjct: 820 NTPIQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESV 879 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL + + Sbjct: 880 FP--LDVPLVVDVGHGPTW 896 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 101/696 (14%), Positives = 193/696 (27%), Gaps = 158/696 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET K A + ++A+ +E Sbjct: 321 VAFDTETD-DLDTKK---------ANLVGFSFAYSEEKAYYVPIGHNYLGVGDQVGLDKA 370 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 + + + HN F+ L + GID K + T +LA SS L++ Sbjct: 371 LEAISKIFEH---TIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLES 425 Query: 112 ACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ K K + + A + Y K Sbjct: 426 VAKRFLDHDMIAYKETVKKG------EDFSQVSIDAACKYASEDAVITYMVYFKLLDALR 479 Query: 171 RELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++ LI + E + G +ID+ +L+ + + ++ + I + Sbjct: 480 KQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEITQKIYEYAG 539 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSG 286 G + T L LF + + ++ T ++ L L+L Sbjct: 540 GEF-NINSTKQLAAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPLLLEYRELYK 598 Query: 287 SAILKLNTLSEA--VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L R+ + G + TGR + QN+P Sbjct: 599 LKSTYIDPLINYAKRDPKHRIYTSFIQTG-TATGRLASKNPNLQNIP------------- 644 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G+ L+ D + IE R+LA + + ++AF Sbjct: 645 -----------IKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQK 693 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G DI++ T K F +KE+R I K + L Y G+ Sbjct: 694 GRDIHMETAIKLFGKEH---AKEKRNIAKSINFGLIYGMGS------------------- 731 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + A + + + +++ A V + + Sbjct: 732 -------------------------RKLAETLGISTKEAKAIIESYFASFPTVKSYLESV 766 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + RR Y + A Sbjct: 767 ENFAKTHGYVETLLKRRR------------------------------------YFDFAH 790 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 + + Y + T + Q + D++ M I+L +HDE++ E + Sbjct: 791 ASGAQLAAYLREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQE 850 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +P++ A+ + Sbjct: 851 NQAQELAEEFKQIMQTIHP--LNVPIECSVQIARNW 884 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 191/701 (27%), Gaps = 152/701 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSDLL 58 D+ET L + A + A A + + L Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LAL 116 +LR AH+ ++ ++ ++ G P + T + A G + LK L Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERA-GFPRPHIDF-DTMIAAYLLGENAVGLKELAFTKL 440 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + G+ +Y DVEAT L + Sbjct: 441 GWEMEEITELIGRGKKQL---------------TMDRAEIARVTQYACADVEATYRLVEV 485 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G ID+ + +L ++ + L+ I + Sbjct: 486 LRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYE 545 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L LF G+ ++ + +L + T + IL Sbjct: 546 LAGHPF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ 604 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ L V GR+ A TGR S QN+P Sbjct: 605 LLKLKSTYVDALPRQVHPQTGRVHTIFHQTVA-ATGRLSSSDPNLQNIP----------- 652 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-------LVVADLAGIEARVLAWIA 393 G VR IA G + L+ D + IE R++A + Sbjct: 653 -------------ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFS 699 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AFA G+DI+ T ++ F P+D V+ E R I KV+ + Y + Sbjct: 700 QDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGL 754 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + F+ + + + + E + L G R Sbjct: 755 ARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR---------RRY 805 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + +L V Sbjct: 806 LPEITSSNPARRQAAERMAVNMPLQGTAADI---------------------MKLAMIAV 844 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + + +VL Sbjct: 845 HRPLAERGLRSR---------------------------MLLQVHDE---LVL------- 867 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E P++ + L + M++ +PL+ + + Sbjct: 868 -EVPESELATTTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 98/696 (14%), Positives = 184/696 (26%), Gaps = 157/696 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET P + +++ D + A Sbjct: 341 IAFDTETTGLDPSKDH----------LVGFSFSTDGKTGYYVPMMHSYLGVGDQVSTEAA 390 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKN 111 + + HN F+ + LG+D + T VLA S + N Sbjct: 391 AKAIRLIFEH---RVIGHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDN 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ K K + D + A+ + Y + Sbjct: 447 LSQSLLHHEMIHFKDTVKKG------ENFASVAIEDACKYAGEDAYITYRLYEVLKEQLL 500 Query: 171 REL-FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + + L D E L + G +D ++ ++ +A E L E I Sbjct: 501 LKGGQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATLTEQIH-SAC 559 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 G + + L + LF G+ ++ T + +L ++L Sbjct: 560 GTVFNLNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPMLLQYREYHK 619 Query: 287 SAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L +D R+ + G + TGR S QN+P Sbjct: 620 LYSTYIEPLIALAQNDPSSRIYTSFVQTG-TATGRLSSKNPNLQNIP------------- 665 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +A GKKL+ D + IE R+LA + + + AF Sbjct: 666 -----------VKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNE 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G DI++ T F + +R I K + L Y G Sbjct: 715 GHDIHMQTAIALFGAE---DASRKRNIAKTVNFGLLYGMGQ------------------- 752 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + + + V + + Sbjct: 753 -------------------------KKLSDTLGITTKEAKEIIERYFETFPSVKGYFNGI 787 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + + RR Y + + Sbjct: 788 VEQAKEIGYVETLLHRRR------------------------------------YFDFGS 811 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 + M + Y + + Q + D++ M ++L +HDE++ E Sbjct: 812 ATPMLKAAYERESVNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDA 871 Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PLK + + Sbjct: 872 DVAEEYAVRFVDAMERILE--LRVPLKTSMHIGNHW 905 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 99/694 (14%), Positives = 199/694 (28%), Gaps = 151/694 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET S + A I ++ +++ + Sbjct: 332 SIVAFDTETTSLD----------TKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQVSIE 381 Query: 56 DLLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112 D + + N ++ + K I++ + T +LA S L Sbjct: 382 DAKSAINKLNNFKLIVQNFKYDFDIIKFNFDIELNL--FADTIILAWLLDSSSKVGLDAL 439 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + K K + A + Y K E + Sbjct: 440 AKNYFDHTMIAFKDVVKKG------DDFSTVDISNACNYAAEDALMTYKIYFKLLEEFKK 493 Query: 172 ELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + L+ + +D E + + + G +ID ++ L+ + ++L + I +L Sbjct: 494 QNCEHLLKIANDYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHELAGT 553 Query: 231 IIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF G+ T + +L+ + +IL+ + Sbjct: 554 KF-NINSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVILDYREAYKL 612 Query: 288 AILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L E S+D ++ + G + TGR S QN+P Sbjct: 613 QSTYIEPLLELASNDSENKIYTSFLQTG-TATGRLSSKNPNLQNIP-------------- 657 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 A +R IA +G KLV D + IE R+LA + + + AF + Sbjct: 658 ----------VKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSD 707 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T K F ++ + ++R I K + L Y G+ Sbjct: 708 LDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGS-------------------- 744 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + A K+ ++ ++ V + K + Sbjct: 745 ------------------------KKLADTLKITPKEAKVYIDSYFEAFTNVKEYMKSIE 780 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + I RR+ + + + Sbjct: 781 DFALENGYVETLIKRRRIFDFNAANTMQRIGYLR-------------------------- 814 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTP 640 + Q + D++ M ++L +HDE++ E + Sbjct: 815 ----------EAVNTKFQGSAADLIKLSMIKIFEKYKNNEDLKMILQIHDELIFEVKNEK 864 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M + +PLK + Sbjct: 865 QDEITNDLKKIMENIFT--LEIPLKVSVAVGNSW 896 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 102/709 (14%), Positives = 185/709 (26%), Gaps = 169/709 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 + +D ET G+ + A Sbjct: 346 VAVDTETDML-DCVSCGL---------VGISLAVAPNAACYIPVGHGGTDMFAERPAQLD 395 Query: 53 ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG----- 104 + + L L D+ V+ V N ++ + ++ I + T V++ Sbjct: 396 KALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH---GIEVVPYDDTIVMSFDLEAGKSL 452 Query: 105 LPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 + A L K G + EY Sbjct: 453 SGHGMDEAARQHLGHECISFKDVVGTGKNQ---------------ISFAEVPLPRATEYA 497 Query: 164 KRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L+KR E R L + + +G ++D + + +L Sbjct: 498 AEDADVTLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREALSRLSAEF 557 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSN 269 L+ +I ++ + T L LF G + T +IL Sbjct: 558 TAGIAALETEIHEIAGQPF-AIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLK 616 Query: 270 ITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 +L S + L ++ D GR+ + GA +TGR S Sbjct: 617 AQGAPIAAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGA-QTGRLSSTDPNL 675 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R +A G ++ AD + IE R Sbjct: 676 QNIP------------------------IRTEVGRQIRHAFVAEPGHVILAADYSQIELR 711 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 + A +A +AFA GEDI+ T + F +V++E R K + A+ Y Sbjct: 712 LAAHMADVPALKEAFAAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYG----- 762 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 L++ + +E + + ++ E + L G Sbjct: 763 ISRWGLAGRLEISADEAQDMISRYYERFPGISIYINETIEKARERGYTETLFGRK----- 817 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + +G A++ + M R + S R Sbjct: 818 ----TWFPRIKASIQHERQGAERAAINAPIQGT--SADIIKRAMVRMGPALEAAGLSGVR 871 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + Sbjct: 872 M---------------------------------------------LLQVH--------- 877 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 DE+V E P+ + + +M P +PL E + Sbjct: 878 --DELVFEVPEGDVDAASAVVRRVMETAAEPIVTLSVPLGVEIGTGPSW 924 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 97/680 (14%), Positives = 180/680 (26%), Gaps = 149/680 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYL 61 + D ET + A + ++ ++DE P + Sbjct: 318 IIAFDTETT----------DIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDF 367 Query: 62 RD---ETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNAC 113 + V N ++ + K+ LG++ P ++ T VLA + Sbjct: 368 AAWAVGQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDALA 426 Query: 114 LAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L N+ + + + P + + AW Y Sbjct: 427 KRLYNYDTIKFEDVVRRG------ETFASVPLENAAKYAAEDAWITLKFYKSFLNLLDPA 480 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L + + E L + G I+ + L + K L +I +LT G Sbjct: 481 L---IELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIYELT-GEN 536 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + + ++ T +++L+ L +L Sbjct: 537 FNINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEYRELYKLQS 596 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L + D R F + TGR + QN+P Sbjct: 597 TYCEPLLNLANKDENSRIYTNFVQTGTSTGRLASKNPNLQNIP----------------- 639 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G + VR A G V D + IE R+LA + ++ +KAF N EDI Sbjct: 640 -------ARGSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDI 692 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F + RA+ K + L Y G+ Sbjct: 693 HARTAISIFG----SADGQNRAVAKSINFGLIYGMGSSKLAG------------------ 730 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + + + + + Sbjct: 731 --------------------------QVNISRAEAKEYIERYFKAFPTIKGFLEGIKTAA 764 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + R+ + + M Sbjct: 765 KNEG--------------------------FVRTLLGRKRFFD----------FTNATPM 788 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSV- 644 + Y + I Q + DI+ M ++L +HDE++ E D Sbjct: 789 QTAMYEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEVADEHAAEFG 848 Query: 645 GTLCSLMTKNPSWAKGLPLK 664 +M + + +PLK Sbjct: 849 EAAQKIMQEI--YKLNVPLK 866 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 102/690 (14%), Positives = 190/690 (27%), Gaps = 153/690 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD------L 57 + D ET S A+ A I ++ ++++ Sbjct: 315 ISFDTETTSTD----------AKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQISMNSA 364 Query: 58 LQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112 + + + N ++ + GI+ P K + T +LA + SS + N Sbjct: 365 KWAI--SQIYKGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMDNL 421 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L N+ + K + ++ AW Y + Sbjct: 422 AKKLYNYETIKFESVVKKG------EDFSSVDLQSASKYASEDAWITLKFYKTFTNKLE- 474 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + G R++L+ + L + L +I +L + Sbjct: 475 --ESMLNIAKNVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIYELCEQR 532 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L LF + ++ T +S+LS + + IL Sbjct: 533 F-NINSSKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYRELYKLQ 591 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L D R F + TGR S QN+P Sbjct: 592 STYCEPLLNLAIKDENHRVYTNFIQTGTATGRLSSKNPNLQNIP---------------- 635 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G + +R+ +G L+ D + IE R+LA + + I+AF NG+D Sbjct: 636 --------ARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDD 687 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T F + + + RAI K + L Y G+ Sbjct: 688 IHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSN----------------- 726 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + + Sbjct: 727 ---------------------------ELSIDKKSAKEYIDRYFKAFSTIKDFLDSIKNR 759 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 D + R+ + G + + Sbjct: 760 AK--------------------------NDGFVETLIGRKRYFD--FGGATPM------- 784 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSV 644 + + + Q + DI+ M ++L +HDE++ E D S Sbjct: 785 -QLAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDELIFEVRDEIAPSF 843 Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + LM A +PL A AK + Sbjct: 844 AKNVQELMQTVV--ALNVPLVANWGMAKNW 871 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 103/701 (14%), Positives = 192/701 (27%), Gaps = 152/701 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMPSDLL 58 D+ET L + A + A A + + L Sbjct: 323 DLETCQAFALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDIEQVLQRLA 382 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC-LAL 116 +LR AH+ ++ ++ ++ G P + T + A G + LK L Sbjct: 383 PFLRHPEKQRYAHHGKYDALVLERA-GFPRPHIDF-DTMIAAYLLGENAVGLKELAFTKL 440 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + G+ +Y DVEAT L + Sbjct: 441 GWEMEEITELIGRGKKQL---------------TMDRAEIARVTQYACADVEATYRLVEV 485 Query: 177 LIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G ID+ + +L ++ + L+ I + Sbjct: 486 LRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYE 545 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + + L LF G+ ++ + +L + T + IL Sbjct: 546 LAGHPL-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQ 604 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ L V GR+ A TGR S QN+P Sbjct: 605 LLKLKSTYVDALPRQVHPQTGRVHTIFHQTVA-ATGRLSSSDPNLQNIP----------- 652 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-------LVVADLAGIEARVLAWIA 393 G VR IA G + L+ D + IE R++A + Sbjct: 653 -------------ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFS 699 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++AFA G+DI+ T ++ F P+D V+ E R I KV+ + Y + Sbjct: 700 QDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGM-----QAYGL 754 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + F+ + + + + E + L G R Sbjct: 755 ARDTGMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGR---------RRY 805 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + +L V Sbjct: 806 LPEITSSNPARRQAAERMAVNMPLQGTAADI---------------------MKLAMIAV 844 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + + +VL Sbjct: 845 HRPLAERGLRSR---------------------------MLLQVHDE---LVL------- 867 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E P++ + L + M++ +PL+ + + Sbjct: 868 -EVPESELATTTELVTTRMSRVVE--LSVPLEVDAKAGPNW 905 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 95/694 (13%), Positives = 179/694 (25%), Gaps = 158/694 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------- 51 S++ ID ET S A A + + + + Sbjct: 314 SRIVIDTETTSLD----------ARTAGLVGISLCAELDRAWYIPLAHIEATGTPVPGQL 363 Query: 52 ---AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLP 106 + + L L ++ V HN ++ + K G++I T V A G Sbjct: 364 PISEVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLA--DTMVAAHLLEKGRT 421 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + C + A A + Y D Sbjct: 422 LKLDDLCAEIGLELTSFAEV---------------VAEDKRADAFAYVALKEACHYSCED 466 Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 V L++ D E + + + G +D ++++L ++ Sbjct: 467 VYGALSLWQDFGEKLSDKALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQ 526 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 +L I + + L + LF G+ ++ T ++ Sbjct: 527 IGELAATIYQEVGHEF-NISSPKQLGVILFEELGLPHGRKTKTGFSTDVKVMEKLASQHP 585 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL + ++ L + GR+ + + TGR S QN+P Sbjct: 586 VPALILKYRTIAKLKSTYVDKLLLLKNPETGRIYTSFNQT-ITATGRLSSSNPNMQNIP- 643 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + +R + GK + AD + I+ RVLA Sbjct: 644 -----------------------IRMEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHY 680 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+D +AFA G+DI+ T A+ F+ V+ E R + K + + Y Sbjct: 681 SGDDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMS-----AFG 735 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + F + + + + +Q E L+G R Sbjct: 736 LAQQLGIGRKEAQRFIDRYFHLYAGVKQFMIDIVEQTRERGYATTLLGR---------RR 786 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + K + E + Sbjct: 787 AVPDIDAKNKGMREFAERMAINTPIQGTAADIIKC------------------------- 821 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + +L + + + + Sbjct: 822 ------AMIAVEKKLAAA-------------GLGA----KMLLQIHDE-----------L 847 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665 V E + + M +PL A Sbjct: 848 VFEVSEAELAETRVVVQEAMESALQ--LDVPLVA 879 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 327 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 190/710 (26%), Gaps = 176/710 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA--------------WDDEPVKLWDRTE 49 L ID ET S L A + + Sbjct: 316 LVIDTETTSLNALR----------AELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGH 365 Query: 50 Q--------SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + +P L L D ++ + HN ++ + K G+++ + Sbjct: 366 RLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSH-GLELA-APLADS 423 Query: 97 SVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + + L + L L + + S A Sbjct: 424 MIASYLIDPGRRSHKLDDLSSEL--------------LERQLTSFAEVSAGDRRPEAFAY 469 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDL 203 Y +DV A+R L++ P + E L + + G +D Sbjct: 470 VEPAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDP 529 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----- 258 ++ +L+ +E +L+ I +L G + L L+ + ++ Sbjct: 530 AVLDELEREFGRELARLESKIAELA-GESFNINSPRQLGEVLYERLKLPHGRKTKGKTGY 588 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 T L +++ S ++ L+ + DGR+ T + T Sbjct: 589 STDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFNQTV-TAT 647 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ +A+ G + Sbjct: 648 GRLSSSNPNLQNIP------------------------IRTPEGRRLRAAFVAAAGHLFL 683 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + I+ RVLA +G+ +AFA+ +DI+ T A+ F VS + R + K + Sbjct: 684 AADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINF 743 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L + FE ++ + +Q Sbjct: 744 GIVYGMS-----AFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARRDGWVGT 798 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556 L+ L + K E + +A + + + Sbjct: 799 LLNRRRPL---------PEINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACD---- 845 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 R L + + + + Sbjct: 846 ---------RALREAGCRSE------------------------------------ALLQ 860 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 HDE++ E P VG L M + A +PL Sbjct: 861 I-----------HDELIFEVPQDELAQVGPLIRQAMEEVMELA--VPLTV 897 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 93/703 (13%), Positives = 188/703 (26%), Gaps = 170/703 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLD----------IYTARLIGISISFKEFEGYYIPIEARGKIYIEKHYII 390 Query: 55 SDLLQYLR-DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + + + + N F+ + K IP + T + A SL Sbjct: 391 QKFNNFFESNPKI--IGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNSKVSLDF 446 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K + ++ Y D + T Sbjct: 447 LAEKYLMHKNIKYEDVIQKN------------------DNFAGISLEMATSYSSEDADIT 488 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LF + E + + + G +D + + + + + +E + + Sbjct: 489 FRLFNVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELI 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLI 278 + +I+K + + LF + L + + T +L + + + Sbjct: 549 ETEIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENL 607 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + + L E ++ RL + TGR + QN+P Sbjct: 608 IKHRQIAKLKSTYTDNLIELINYKTNRLHTNFIQTK-TATGRVTSINPNLQNIP------ 660 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R NG + AD + IE +LA ++ ++ Sbjct: 661 ------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEV 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IKAF N +DI+ T +K F +++ R I K + + Sbjct: 703 LIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRM 748 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + A + + + ++ + + Sbjct: 749 SDFRL------------------------------AKELGITKEEAKGFIDSYFDSYPKI 778 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR Y Sbjct: 779 KEFIINQINFVRNTGYSETILKRRR---------------------------YIKEINSN 811 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +YL S R +I+Q + DI+ M K I+L VHDE Sbjct: 812 NYL--ERSAAERISI------NSIIQGSAADIMKIAMVKVFNEFKSKKMESKILLQVHDE 863 Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++ E+P V + + M + PL+A K + Sbjct: 864 MLIESPIKEENEVKKILKIMMETAYTLTP--PLRANIETGKSW 904 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 94/673 (13%), Positives = 175/673 (26%), Gaps = 142/673 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSLFER 77 + A++ + + L L D V + H+ + Sbjct: 331 GGVVGLAFSTAARSASYVPLAQDGLDLTGSLDGGTVFGTLGPMLEDPQVRKIGHDLKRDM 390 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC-LALNFSEHLTKMEEGKALIA 133 + I + T + + + + + GK A Sbjct: 391 LWLAAHE-IRLRGLEL-DTMIASYLLDATRTTPTVETVALEHAGYQALTADTVRGKGAKA 448 Query: 134 --RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 Y C RA+ + D E EL++ L E+ L + Sbjct: 449 PDFDRLPPDGVLAYACERADLPLQAAE-PLRARLDQERLAELYREL------EQPLIPVL 501 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ++ D + + + +L I L + L LF + Sbjct: 502 ADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAGEEF-NINSPRQLSAILFEKLAL 560 Query: 252 DLVDMS-----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRL 305 + T +L L++ A ++ L + V D GR+ Sbjct: 561 PTRKKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTGRV 620 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + A TGR S QN+P +R Sbjct: 621 HTSFNQAVA-ATGRLSSSDPNLQNIP------------------------IRTPLGREIR 655 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G L+ AD + IE RVLA ++ + +AF EDI+ Sbjct: 656 RAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNEDIH---------------- 699 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 GLD + + ++ L Sbjct: 700 ------------------DKTALHVFGPDSGLDAHEL----------RRRAKIINYALLY 731 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + + A + A+ + V + + + Sbjct: 732 GKTAFTLSRDIGVTPQAAQAFIDAYFEGYPAVRGFLDGVIDEARESGEVRTMF------- 784 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 RR + +++ + A ++ +Q Sbjct: 785 -------------------GRRRLVPELRNRNGQIRAAAERVT---------VNMPIQGT 816 Query: 606 SRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 + DIL M + ++LTVHDE++ E P SV L M + + Sbjct: 817 AADILKRAMIDLAGALPPSAPMILTVHDELLIEPPRDEADSVADLVRDRMERAAD--LTV 874 Query: 662 PLKAEGYEAKRYR 674 PL+ + + + Sbjct: 875 PLRVDVGIGENWM 887 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 103/692 (14%), Positives = 200/692 (28%), Gaps = 153/692 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSA 52 ++ D ET S A I ++ WD++ Sbjct: 313 KEIAFDTETTSVDS----------HNAKIVGFSFCWDEKSSFYVPLAHSYLGAPDMLDKN 362 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + L++ + + + + N ++ + + G++ P ++ T +LA + Sbjct: 363 IAKRLIEAIYTKFI--IGQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMD 419 Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N ++ + K + + AW Y K Sbjct: 420 NLAKRYFDYDTIKFENVVKKG------ENFSSVDVKNAANYASEDAWITLKFYKKFCGIL 473 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + EL L + E + + + G ++D+ + ++ IA++ K L +I L+ Sbjct: 474 STEL---LDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNEIYDLS- 529 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 G + T L LF G+ ++ T +S LS + IL Sbjct: 530 GENFNINSTKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILAYRELYK 589 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + R F + TGR S QN+P Sbjct: 590 LQSTYTEPLLALALKNDENRIFSNFLQTGTSTGRLSSKNPNLQNIPAH------------ 637 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 G + +R+C ++ +G V D + IE R+LA + + ++AF Sbjct: 638 ------------GSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFRED 685 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T F T KE+RA+ K + L Sbjct: 686 EDIHSRTAISIFGTS----DKEKRAVAKTINFGLI------------------------- 716 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + + + + + + ++L Sbjct: 717 -------------------YGMGASKLSNELGISRSDAKDYIEKYFKAFASIKNFMENLK 757 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 +R Y + A + Sbjct: 758 SEAKKNGYTTTLFGRKR------------------------------------YFDFANA 781 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDTPYF 642 M+ Y + Q + DI+ + M + ++L +HDE++ E D Sbjct: 782 TPMQFAMYERESVNTKFQGSAADIIKKAMVEISPFLNENTRLLLQIHDELIFEVRDDMSE 841 Query: 643 SV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 S + +M +PLK KR+ Sbjct: 842 SFGKKMQEIMQNVVK--LNVPLKTSLSINKRW 871 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 95/696 (13%), Positives = 179/696 (25%), Gaps = 152/696 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 ++ D ET G A A + +++ + A+ L Sbjct: 367 EISFDTETT--------GTDANAVD--LVGMSFSIKAGEGWYIPVPADKAQAQAIVDSFL 416 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA-CLA 115 + + N ++ I+ K G++ T + + Sbjct: 417 PLFNTTHITLIGQNIKYDMIVMKWY-GVEFNG-PVFDTMLAHYLIEPEGRRGMDLLSAQY 474 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + + GK + EY D + T +L + Sbjct: 475 LQYEPVSIETLIGKKGKGQG--------------NMRDVEIDKIKEYAVEDADITLQLKE 520 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL D E L + + G +D+ + + E K+ +E + Sbjct: 521 KFAPLLPLKAVDKVFYDVENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSEG----TLKSILSHSNITQLAKDLILN 280 G+ + L LF +D ++ T + +L+ + IL Sbjct: 581 -TQAGVRFNLASPKQLGEVLFEKLLLDPKAKKTKTGQYATGEDVLAKLANKHQIVEDILV 639 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++ L ++ R+ + A TGR S QN+P Sbjct: 640 FRELSKLKSTYVDALPLMLNKRTNRVHTSYNQAVA-VTGRLSSNNPNLQNIP-------- 690 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A L+ AD + IE R++A I+G+ Sbjct: 691 ----------------IRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHM 734 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I AF G DI+ T AK + + V+ + R K + + Y L Sbjct: 735 IDAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVS-----AFGLSENLG 789 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + + F + + + + + L+G L + + Sbjct: 790 IARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWL---------KDIN 840 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + +L + Sbjct: 841 SSNAVVRGYAERNAINMPIQGTAADMI---------------------KLAMISIHKTLK 879 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N + M L VHDE+V + Sbjct: 880 KENLRSR----------------------------MI----------LQVHDELVFDVHK 901 Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + L M A +P+ E + Sbjct: 902 DEIEQIKPLIQDGMRNALPLA--VPVDVEIGIGVNW 935 >gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 470 Score = 326 bits (836), Expect = 7e-87, Method: Composition-based stats. Identities = 138/522 (26%), Positives = 220/522 (42%), Gaps = 70/522 (13%) Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+ ++L P+ E + + +DQ INDRG RID LV + + + +LT Sbjct: 1 MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L+ +L G +S+ ++ +L + ++ R S S+ Sbjct: 61 G--LANPNSPLQLKDWL-QQQGAKTDSLSKASVAQLLQTTTGK--VHQILALRQLLSKSS 115 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 116 VKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQG 175 Query: 349 R----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + S +R+ I S VAD + +EARV+AW++ E+W+ +AFA Sbjct: 176 NVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEAFAK 235 Query: 405 GEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 EDIY + ++ F P ++ E R GK+ ELALGY G K M + + Sbjct: 236 NEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLV----- 290 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 L + + WR ++Q W Sbjct: 291 -----------------------------------LTDDELPPLVQMWRNASPHIVQFWW 315 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ + ++ + + + + L S R L Y K + + Sbjct: 316 DVDKAAKECIKTHLPQTT------HGMKFIYRSGCMFLRLRSGRYLCYPKPKIGTNRFGS 369 Query: 583 AT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + R TYG KL ENIVQA SRD+L E M+ +V+ +HDE V Sbjct: 370 ESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAV 429 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P S+ T+ LMT+ P WA GL L A G+ + Y+K Sbjct: 430 IDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 117/688 (17%), Positives = 200/688 (29%), Gaps = 139/688 (20%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------EQSAMPSD----L 57 ET L G A A +T A + + + S+ L Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L ++ + AHN+ + L G +I + T + A G L Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLGE--------KNLG 437 Query: 118 FSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + + E + + + Q + K A Sbjct: 438 IKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETN 497 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + + E L + + G +D DL+ + E + + KL+E I G + Sbjct: 498 LIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA-GHSFNI 556 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF + ++ ++ T +L DLIL L Sbjct: 557 GSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYL 616 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL V+ R T + TGR S QN+P Sbjct: 617 DTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP--------------------- 655 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T Sbjct: 656 ---VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTAT 712 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ N +V+KEQR + K + + Y GL+ Sbjct: 713 AARLLNILPSEVTKEQRRLAKTVNFGVIYGMS---------SYGLE-------------- 749 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 +L + KA+ K+ V + ++ Sbjct: 750 ---------------------QATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNG 788 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR ++ L + R Sbjct: 789 YVETLL--------------------------GRRRYIPEINSPNRILRESA---ERMAI 819 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 VQ S DI+ M + ++L VHDE++ E PD + Sbjct: 820 ------NMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSA 873 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M+ ++ +PLK E + Sbjct: 874 LLMETMSGAVTF--EIPLKVELKSGANW 899 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 125/679 (18%), Positives = 205/679 (30%), Gaps = 136/679 (20%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------EQSAMPSD----LLQYLRDET 65 L G A A +T A + E ++ L L DE Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVPAEFIGSASEGQMFAAEGHSGLAALLGDEK 395 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTK 124 + AHN+ + L G + + T + A G KN L F + Sbjct: 396 ISKTAHNAKYLMNLLLSA-GQAVKGLDF-DTMIAAHLLGE----KNLAIKDLVFEHFGIE 449 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 + + + ++ R K + S + Q + K A + + + E Sbjct: 450 IADIENILTRNGKKASFSEVQ---LSEAAQLAADYTFRLKGIFAAQLAETRLMDLFARVE 506 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + G +D DL+ + E ++ KL+EDI G + L Sbjct: 507 MPLLPILLGMERTGIMLDTDLLKAMAEKTGRQIFKLEEDIYARA-GHNFNIGSPQQLGRI 565 Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 LF + ++ ++ T +L DLIL L+TL V+ Sbjct: 566 LFDELKLPVIKKTKTGYSTGAEVLEELKGKHRIVDLILEYRMLVKLKSTYLDTLPRMVNP 625 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R T + TGR S QN+P G Sbjct: 626 HTRRLHTSFNQTRTATGRLSSSEPNLQNIP------------------------VRGEMG 661 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R IA G L+ D + I+ RVLA ++ + I+AF + +DI+ T A+ N P Sbjct: 662 REIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPP 721 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 KV+KEQR + K + + Y GL+ Sbjct: 722 SKVTKEQRRLAKTVNFGVIYGMS---------SYGLE----------------------- 749 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +L + KA+ K+ V + ++ + + Sbjct: 750 ------------QATELSLEEADKFIKAYFEKYPRVAVYFSEIKQQVRTQGYVETLL--- 794 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 RR ++ L + R Sbjct: 795 -----------------------GRRRYIPEINSPNRILRESA---ERMAI------NMP 822 Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 VQ S DI+ M + ++L VHDE++ E P T + L M+ Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGA 882 Query: 655 PSWAKGLPLKAEGYEAKRY 673 A +PLK E + Sbjct: 883 V--AFEIPLKVELKSGANW 899 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 326 bits (835), Expect = 9e-87, Method: Composition-based stats. Identities = 97/701 (13%), Positives = 192/701 (27%), Gaps = 166/701 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390 Query: 61 -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113 L + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K + ++ Y D + T Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSCEDADITFR 490 Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 LF + E + + + G +D + + + + +E + ++ Sbjct: 491 LFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIEN 550 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279 +I+K + + LF + L +K + S + ++LI Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIK 609 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +R + + + L E ++ RL + + TGR + QN+P Sbjct: 610 HRRIAKLKST-YTDNLIELINYKTNRLHTSFIQT-RTATGRITSINPNLQNIP------- 660 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 IKAF N +DI++ T +K F +++ R I K + + Sbjct: 704 IKAFENNKDIHIETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMS 749 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + A + + + ++ + + Sbjct: 750 DFRL------------------------------AKELGITKEEAKGFINSYFDSYPKIK 779 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + + RR Y + Sbjct: 780 EFIINQINFVKNTGYSETILKRRR---------------------------YIKEINSNN 812 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632 YL S R + +Q + DI+ M K I+L VHDE+ Sbjct: 813 YL--ERSAAERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + E+P V + +M + ++ LPL+A K + Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 325 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 99/701 (14%), Positives = 193/701 (27%), Gaps = 166/701 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60 + ID ET S A + + ++ + + + Sbjct: 341 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKFYIEKHYII 390 Query: 61 -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113 L + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K + ++ Y D + T Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSCEDADITFR 490 Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 LF + E + + + G +D + + + + +E + ++ Sbjct: 491 LFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKELELIEN 550 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279 +I+K + + LF + L +K + S + ++LI Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIK 609 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +R + + + L E ++ RL + + TGR + QN+P Sbjct: 610 HRRIAKLKST-YTDNLIELINYKTNRLHTSFIQT-RTATGRITSINPNLQNIP------- 660 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEAL 703 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 IKAF N +DI+V T +K F T +++ R I K + + Sbjct: 704 IKAFENNKDIHVETASKLFKTEEKEITPNLRRIAKSIN--------------FGIIYRMS 749 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + A + + + ++ + + Sbjct: 750 DFRL------------------------------AKELGITKEEAKGFINSYFDSYPKIK 779 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + + RR Y + Sbjct: 780 EFIINQINFVKNTGYSETILKRRR---------------------------YIKEINSNN 812 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632 YL S R + +Q + DI+ M K I+L VHDE+ Sbjct: 813 YL--ERSAAERIAI------NSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEM 864 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + E+P V + +M + ++ LPL+A K + Sbjct: 865 LIESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 904 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 118/688 (17%), Positives = 201/688 (29%), Gaps = 139/688 (20%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT------EQSAMPSD----L 57 ET L G A A +T A + + + S+ L Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGL 387 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L ++ + AHN+ + L G +I + T + A G L Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLGE--------KNLG 437 Query: 118 FSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + + E + + + Q + K A K Sbjct: 438 IKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETK 497 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + + E L + + G +D DL+ + E + + KL+E I G + Sbjct: 498 LIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA-GHSFNI 556 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF + ++ ++ T +L DLIL L Sbjct: 557 GSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYL 616 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL V+ R T + TGR S QN+P Sbjct: 617 DTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP--------------------- 655 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T Sbjct: 656 ---VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTAT 712 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ N +V+KEQR + K + + Y GL+ Sbjct: 713 AARLLNILPSEVTKEQRRLAKTVNFGVIYGMS---------SYGLE-------------- 749 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 +L + KA+ K+ V + ++ Sbjct: 750 ---------------------QATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNG 788 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR ++ L + R Sbjct: 789 YVETLL--------------------------GRRRYIPEINSPNRILRESA---ERMAI 819 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 VQ S DI+ M + ++L VHDE++ E PD + Sbjct: 820 ------NMPVQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSA 873 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M+ ++ +PLK E + Sbjct: 874 LLMETMSGAVTF--EIPLKVELKSGANW 899 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 96/696 (13%), Positives = 185/696 (26%), Gaps = 157/696 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + D ET + ++ +E Sbjct: 330 VAFDTETTGLD----------TRTDKMVGFSFCTSNEKAYYVPVGHSYLGVEEQVDPEDA 379 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKN 111 + L + + V N F+ L G++ + T ++A S L + Sbjct: 380 VAALKKLM---KQKIVGQNLKFDLSLLYNQYGME-EVLPFADTMIMAWLTDPGSRVGLDS 435 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + K K + D T AW F Y + Sbjct: 436 LAQKFFKYDMKPFKEMVKKG------ENFSHVNIADATFYAAEDAWMTFLLYGAIKKKME 489 Query: 171 RE-LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L L D E + + G ++D + L++ ++++ +L +I +L+ Sbjct: 490 LSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELSG 549 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + R T L + LF G+ ++ T +++L IL Sbjct: 550 SEF-NIRSTQQLGVVLFQHLGLKGGKKTKTGYSTNEAVLQSLKHEHPVIGKILEYREYHK 608 Query: 287 SAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + D R+ + G + TGR S QN+P Sbjct: 609 MLSTYVEPLLKLAKKDEKSRIYTSFIQTG-TATGRLSSKDPNLQNIP------------- 654 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR +A G KLV D + IE R+LA + + ++AF Sbjct: 655 -----------VRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNK 703 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G DI++ T K F Sbjct: 704 GTDIHMATAVKLFGEEEA------------------------------------------ 721 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 ++ ++ + L + + + + + + + A V + + Sbjct: 722 -----KAKRNFAKSVNFGLLYGMGPKKLSDELGITSAEAKEIIANYFASFPTVKNFLEGI 776 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + RR+ + Y N Sbjct: 777 QERVKIDGYVETLLKRRRIFD---------------------------------YENANG 803 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 Q Y + + Q + D++ M + ++L +HDE++ E + Sbjct: 804 MQK---AAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIRE 860 Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M W +PL + Sbjct: 861 DQVEKISKRFVHVMEHI--WELEVPLVCSVSVGDSW 894 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 95/669 (14%), Positives = 182/669 (27%), Gaps = 149/669 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYLR 62 + D ET + A + ++ ++DE + + P + Sbjct: 303 VAFDTETTDVD----------TQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFA 352 Query: 63 D---ETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACL 114 + + N ++ + K+ LG++ P + T +LA SS + Sbjct: 353 AWAISQIYKGCVIGQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALAK 411 Query: 115 AL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L ++ + + + + + AW Y EL Sbjct: 412 RLYDYDTIKFEDVV------KRGETFASVALENAAKYAAEDAWITLKFYKSFLNLLDPEL 465 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 L E L + G I+ + + L + K L +I +LT G Sbjct: 466 ---LALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELT-GENF 521 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + + ++ T +++L+ + +L Sbjct: 522 NINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYRELYKLQST 581 Query: 291 KLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L D R+ G + TGR S QN+P Sbjct: 582 YCEPLLNLAKKDANSRIYTNFIQTG-TSTGRLSSKNPNLQNIP----------------- 623 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G + VR C A + V D + IE R+LA + ++ ++AFAN EDI Sbjct: 624 -------ARGALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLRAFANDEDI 676 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F + RA+ K + L Y G+ Sbjct: 677 HARTAISIFG----SAEGQNRAVAKSINFGLIYGMGSSKLAN------------------ 714 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + + + + + Sbjct: 715 --------------------------QVSITRAEAKEYIERYFKAFPTIKGFLEGIKTAA 748 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + +R+ + T+ M Sbjct: 749 KNEGFVRTLLGRKRLFDF------------------------------------TTATPM 772 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSV- 644 + Y + I Q + DI+ M ++L +HDE++ E D Sbjct: 773 QTAMYEREAVNTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQDGYAEEFG 832 Query: 645 GTLCSLMTK 653 +M + Sbjct: 833 AAAQKIMQE 841 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 117/688 (17%), Positives = 199/688 (28%), Gaps = 139/688 (20%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----TEQSAM-----PSDL 57 ET L G A A +T A + + M L Sbjct: 329 TET-KELALAVSGTSEEAIDARLTALAISPAEGEAYFISAEFIGSASGGQMFVSEGHPGL 387 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L ++ + AHN+ + L G +I + T + A G L Sbjct: 388 IALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLGE--------KNLG 437 Query: 118 FSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + + E + + + Q + K A Sbjct: 438 IKDLVFEHFGVEIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAEIN 497 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + + E L + + G +D DL+ + E + + KL+E I G + Sbjct: 498 LIDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA-GHSFNI 556 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF + ++ ++ T +L DLIL L Sbjct: 557 GSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYL 616 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL V+ R T + TGR S QN+P Sbjct: 617 DTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP--------------------- 655 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T Sbjct: 656 ---VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTAT 712 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ N +V+KEQR + K + + Y GL+ Sbjct: 713 AARLLNILPSEVTKEQRRLAKTVNFGVIYGMS---------SYGLE-------------- 749 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 +L + KA+ K+ V + ++ Sbjct: 750 ---------------------QATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNG 788 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR ++ L + R Sbjct: 789 YVETLL--------------------------GRRRYIPEINSPNRILRESA---ERMAI 819 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 VQ S DI+ M + ++L VHDE++ E PD + + Sbjct: 820 ------NMPVQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSA 873 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M+ ++ +PLK E + Sbjct: 874 LLMETMSGAVTF--EIPLKVELKSGANW 899 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 91/709 (12%), Positives = 185/709 (26%), Gaps = 181/709 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD- 56 + D ET E + ++ ++++ + + Sbjct: 333 IVAFDTETTGLD----------YENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQED 382 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLK 110 + + V HN F+ + LG + + +LA SL Sbjct: 383 AKIAIKKIFNS---RVVGHNIKFDLHFVIRFLGEG-ELDIFADSMILAWLINPESALSLD 438 Query: 111 NACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K K A + Y D Sbjct: 439 KLSEKLLEHKMITFKESVKKG------------------ETFASVALEEACNYAAEDAYI 480 Query: 170 TRELFKRLIPLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 T L+ + + + E + G ++ + + Sbjct: 481 TLRLYYLFLEMLKDQGAEHLIEEAKEVEFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDS 540 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 +L + I +L + T L LF G+ ++ T + +L+ Sbjct: 541 LSELTKKIYELASLEF-NINSTQQLGNVLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHE 599 Query: 274 AKDLILNRLASSGSAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +L + L + + R+ + G + TGR S QN+P Sbjct: 600 IIPYLLEYREVYKLYSTYIEPLLKLSQQDKESRIHTSFVQTG-TTTGRLSSKNPNLQNIP 658 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R +A GKKL+ D + IE R+LA Sbjct: 659 ------------------------TRTALGTKIREAFVAPEGKKLIGIDYSQIELRLLAH 694 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + ++AF +DI++ T F ++ + +R + K + L Y G Sbjct: 695 FTQDRVLVEAFMQDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQ------ 745 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + K+ + + + + Sbjct: 746 --------------------------------------KKLSETLKITTAEAKEIIERYF 767 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + V ++ + + + RR Sbjct: 768 SSFPSVKSYFRSIVDFSKEAGYVETLLKRRR----------------------------- 798 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIV 625 Y + ++ M Y + +I Q + DI+ M K ++ Sbjct: 799 -------YFDYESASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKML 851 Query: 626 LTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L +HDE++ E + + ++M +PLKA ++ Sbjct: 852 LQIHDELIFEVDTSEAEILGEKFKNIMQNIMP--LNIPLKASMKIGDKW 898 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 323 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 83/677 (12%), Positives = 176/677 (25%), Gaps = 153/677 (22%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQYLRDETVMCVAHNSLFERILFKK 82 A + A+ + + + +T++ V N ++ + KK Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430 Query: 83 TLGIDIPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGS 139 GI + + +L LN+ T+ G ++ Sbjct: 431 Y-GIRMN-YPIFDILIAHYLINPEYLHNLDFLAKTYLNYRIINTEELIGSKKESQLSVR- 487 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWL 189 L +Y + + +L P+ E L Sbjct: 488 -------------QVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVF 534 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + + G ++D+ + ++ + + +++ I+ G I + + LF Sbjct: 535 VLSDMEEFGVKLDISALKDYSVVLNRYLESIEK-IIFQISGKIFNVNSPKMVGEILFDHL 593 Query: 250 GI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDG 303 I T + IL + IL S ++TL VS D Sbjct: 594 KIIENSKKTKSGQYATSEGILENLKKKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDK 653 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 ++ T + TGR S QN+P Sbjct: 654 KIHTTYNQAT-TATGRLSSNSPNLQNIP------------------------IRDKEGKE 688 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + + AD + IE R++A ++ + ++AF NG+DI+ + F P+ + Sbjct: 689 IRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAE 748 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++ + R K+ G+ + ++ ++ + Sbjct: 749 ITCDMRRKAKITNF--------------GIIYGISVFGLAEQLQVSRFI----------- 783 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + + Sbjct: 784 -------------------AKELINKYFMIFPDIKNYIDRSIAIARKDGYVETIFR---- 820 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 R+ D+ S + R +Q Sbjct: 821 ----------------------RKRFLPDINSRNSVVR---KYAERNSINAP------IQ 849 Query: 604 AISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656 + DI+ M + +++ VHDE+ V + M Sbjct: 850 GSAADIIKVAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKVKQIVVYEMEHATH 909 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL K + Sbjct: 910 --LKVPLVVNCGIGKNW 924 >gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 917 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 89/702 (12%), Positives = 193/702 (27%), Gaps = 158/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 L +D ET SP P A + +++ ++ +++ Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389 Query: 55 SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 ++ ++L V V N ++ I+ + G + + ++ T + + G + Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRRHN 447 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN++ + G + + EY D Sbjct: 448 MDDLAKEFLNYNTITYEDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 492 Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L++ + E L + + G +D+ +L +E Sbjct: 493 DVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 552 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 + L+ +I + G + T L+ LF + +V ++ T +L Sbjct: 553 RHLESEIHRQAGGPF-NIASTKELQKILFDDLKLRIVKKTQTGFSTDHEVLEELAGEHPI 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + +L+ + ++ L + V+ GR+ + A TGR S QN+P Sbjct: 612 IEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392 +R + +++ D + IE R++A I Sbjct: 669 ----------------------IRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHI 706 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++A+ +G DI+ T A + P V+ E R KV+ ++ Y Sbjct: 707 SKDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTP-----YG 761 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + + +S+ M + + L G + Sbjct: 762 LSRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVT------ 815 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + K E + ++ Sbjct: 816 ---DINSTHKSAKEAAKRIAINSPIQGTSADMI---------------------KIAMIK 851 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + D + + + + Sbjct: 852 IHEDIEKKHYKSR---------------------------MLLQVHDE-----------L 873 Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E + M S LP+ EG + Sbjct: 874 VFEVHKKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 101/669 (15%), Positives = 187/669 (27%), Gaps = 140/669 (20%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPS-----DLLQYLRDETVMCVAHNSL-FERILF 80 + ++ A D V +A+P +L + ++E + + HN F Sbjct: 344 SSRLSGLALCTGD-EVFYI--ETGTALPENLIATELKELWQNENIHKIGHNIKEF-ITWL 399 Query: 81 KKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALNFSEHLTKMEEGKALIARFC 136 K +++ + T + + + LN S GK Sbjct: 400 LKH-DVELNGL-YFDTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGK---GA 454 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 K + PP + +F + + + L D E L + ++ Sbjct: 455 KKYSEIPPERLKDYSAYNVKAIFDIWPMQKKVLQENRQEELFN--DIELPLITVLASMEY 512 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253 G+++D + + E++ K L++ I + G + T L LF + + Sbjct: 513 HGFKVDAAKLHEYGEVLLSRIKDLEKVIY-MLAGEEFNINSTKQLGTILFEKLKLPVVKS 571 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 T +L I+ + L + ++ G++ + Sbjct: 572 TKTGYSTDVEVLEELYYKHDIIPCIIEYRQLTKLYTTYAEGLEKVINPVTGKIHSSFNQT 631 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371 + TGR S QN+P +R I S Sbjct: 632 V-TATGRISSTEPNLQNIP------------------------VRHEMGREIRKAFIPSS 666 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 V AD + IE RVLA I G++ I AF GEDI+ T + F+ + V+ E R Sbjct: 667 ENAVFVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRK 726 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + G+ Sbjct: 727 AKAVN--------------FGIVYGISDY------------------------------G 742 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A + + + AK+ V ++ Sbjct: 743 LARDLGITRKEAKRYIDDYFAKYPKVKTYVDEIVRVGQEQGYVETLFH------------ 790 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 RR ++ + + ++ +Q + DI+ Sbjct: 791 --------------RRRYLPELASKNFHQRSFGKRV---------AMNTPIQGTAADIIK 827 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 M K ++L VHDE+V ET + +V L M + +PL Sbjct: 828 IAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE--LSVPLV 885 Query: 665 AEGYEAKRY 673 + K + Sbjct: 886 VDVSIGKNW 894 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 90/663 (13%), Positives = 193/663 (29%), Gaps = 132/663 (19%) Query: 29 VITLCAYAWDDEPVKLWDR---TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 I ++ + E + D +++ A+ + + L DE + + H+ E F Sbjct: 345 HILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHEIRHFYVH-D 403 Query: 86 IDIPSKRWICTSVLARTNGL---PSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSID 141 I++ + + T + +LK+ + GK + Sbjct: 404 IEMKNVTF-DTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPK 462 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 +++ E + E E + E L + + +G ++ Sbjct: 463 EDLMKYLCQRVSVIGKIYPEIKAKMQELELE-----KLYYEVELPLVEVLAAMEYKGIKV 517 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D ++ L+ ++ L + I +L + L LF + + ++ Sbjct: 518 DRSMLEILEIEFGEQIDLLTKAIHELA-ETNFNINSPKQLGEVLFEKLELPPIKKTKTGY 576 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 T +L IL + ++ L ++ GR+ + T Sbjct: 577 STNAEVLEKLQDQHDIIPKILEYRQVTKLKSTYVDGLLNIINPETGRIHSNFNQTV-TTT 635 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R +A+ + + Sbjct: 636 GRISSTEPNLQNIP------------------------IKLEMGRRLRKVFVANENHQFI 671 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E RVLA I ++ + AF +DI+ T A+ F+ P+++V+ R+ K + Sbjct: 672 DADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAVNF 731 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L+ Sbjct: 732 GIVYG-----ISDYGLSQNLN--------------------------------------- 747 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + K+ V + ++ E + Sbjct: 748 ITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFN------------------ 789 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR ++K + + ++ +Q + DI+ M N Sbjct: 790 --------RRRYLPELKSRNFNIRSFGERM---------AMNTPIQGSAADIIKIAMVNV 832 Query: 618 TKNG------YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E PD + M + + + LK + A Sbjct: 833 YRRLKEQGLTSKLILQVHDELIVEAPDNEVEVAIKIVRESMEEAMN--LKVQLKVDLAYA 890 Query: 671 KRY 673 + Sbjct: 891 NNW 893 >gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] Length = 917 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 89/702 (12%), Positives = 193/702 (27%), Gaps = 158/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 L +D ET SP P A + +++ ++ +++ Sbjct: 340 RVLSVDTETTSPNP----------AMAELVGISFSNQEKTGFYVSVKNNASLFQDKSLNL 389 Query: 55 SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 ++ ++L V V N ++ I+ + G + + ++ T + + G + Sbjct: 390 DEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRRHN 447 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + LN++ + G + + EY D Sbjct: 448 MDDLAKEFLNYNTITYEDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 492 Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L++ + E L + + G +D+ +L +E Sbjct: 493 DVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 552 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 + L+ +I + G + T L+ LF + +V ++ T +L Sbjct: 553 RHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPI 611 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + +L+ + ++ L + V+ GR+ + A TGR S QN+P Sbjct: 612 IEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392 +R + +++ D + IE R++A I Sbjct: 669 ----------------------IRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHI 706 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++A+ +G DI+ T A + P V+ E R KV+ ++ Y Sbjct: 707 SKDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTP-----YG 761 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + + +S+ M + + L G + Sbjct: 762 LSRNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVT------ 815 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + K E + ++ Sbjct: 816 ---DINSTHKSAKEAAKRIAINSPIQGTSADMI---------------------KIAMIK 851 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + D + + + + Sbjct: 852 IHEDIEKKHYKSR---------------------------MLLQVHDE-----------L 873 Query: 633 VSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V E + M S LP+ EG + Sbjct: 874 VFEVHKKEKDDFKASMKKHMETAMS--LDLPIVVEGKFGVNW 913 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 111/700 (15%), Positives = 199/700 (28%), Gaps = 167/700 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---AMPSDLLQ 59 + D+ET S P QA I A + ++ + +++ Sbjct: 337 IISFDLETSSLDP----------YQADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVD 386 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LA 115 L ++ V + N ++ + K GI++ + + + A ++ + Sbjct: 387 LLNNKKV--IGQNLKYDITVLK-VNGIELSKVHF-DSMIAAYLLNPDSRRFNMDDLAKEY 442 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L++ K GK + + EY D + LF+ Sbjct: 443 LDYKTIKYKEVMGKDIKLLTLGDIDK---------------KRVVEYAGEDADIAYRLFE 487 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E + + G DL + KL+E ++ L ++ Sbjct: 488 VLKPKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMK 547 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 K+ + + LF G+ ++ T L + +L Sbjct: 548 KIVGYDF-NPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEY 606 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + V+ GR+ + G + TGR S QNLP Sbjct: 607 RKYQKLLSTYIIAIPKLVNKKTGRVHTSFNQTG-TATGRLSSSEPNLQNLP--------- 656 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + +RS + A + L+ AD + IE RVLA + ++ I Sbjct: 657 ---------------IREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDETLI 701 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF NGEDI+ T A F ID V Sbjct: 702 NAFNNGEDIHALTAAAIFGVKIDDVDYNM------------------------------- 730 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + L A K+ + + +Q V + Sbjct: 731 -------------RRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFMNRYFKTYQKVKE 777 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + R+ ++K Sbjct: 778 YQESSLKIATQKGYVETIF--------------------------GRKRFLKNIK----- 806 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSET 636 T S+L R + +Q + DI+ M N K ++L VHDE+V E Sbjct: 807 --TGKSELKRI------VINTPIQGSAADIMKLAMINLYKKLPKEAKLILQVHDEVVIEL 858 Query: 637 PDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675 P+ + M +PLK + K ++K Sbjct: 859 PEKIVEETKKMVQDCMENAVK--LNIPLKVDISVGKNWQK 896 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 113/689 (16%), Positives = 193/689 (28%), Gaps = 156/689 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA I A A + + L L E Sbjct: 426 MQADICGIALALSPNEAAYIPLGHKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEA 485 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLA-LNFSEH 121 V+ + F +L + +I + +++ S + L Sbjct: 486 VLKTGFDIKFAAVLLAQH---NITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHEMI 542 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKRLI 178 G + I+ + Y A+ ++ W +F + E +++ L Sbjct: 543 AHADIVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFK--ARLISERMNNVYESL- 599 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +L+ +I ++ G + Sbjct: 600 -----ERPLIDVLARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIA-GEDINPGSP 653 Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLN 293 L +F G+ ++ T SIL IL+ S + Sbjct: 654 KQLGDVMFGKMGLPGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKSTYTD 713 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + + T A+ TGR S QN+P Sbjct: 714 ALPTHLLPQTQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 751 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T Sbjct: 752 --VRTEDGRKIRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTA 809 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F PI + E R K + G+ Sbjct: 810 SEMFGVPIKDMPGEVRRRAKAINF--------------GIIYGIS--------------- 840 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + K + + G+ + Sbjct: 841 ---------------AFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGY 885 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 R+ Y D+K L R Sbjct: 886 VTTLF--------------------------GRKCHYPDIKASNPSLRAF---NERAAIN 916 Query: 594 GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGT 646 Q + DI+ M K ++L VHDE+V E PD+ ++ Sbjct: 917 ARL------QGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDKTLPV 970 Query: 647 LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M + P+ A +PL+ + A + Sbjct: 971 IREVMEQAPFPATALSVPLRVDARAADNW 999 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 100/644 (15%), Positives = 185/644 (28%), Gaps = 143/644 (22%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + ++L + + + H+ K GI++ + T + A S Sbjct: 371 ETVVNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELENV-IFDTFIAAYILEPTRSTY 428 Query: 111 NACLALNFSEHLTK----------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 SE K + GK L S + C A + Sbjct: 429 TISE---LSEDKLKQSITPVEILYDKHGKRLEQGQDVSSSEV----CAAAVNAIYGLTQK 481 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 EL+ ++ E L + + RG+++D++ + + + L Sbjct: 482 LRPIIRDNGQDELYYKI------ELPLVEVLANMELRGFKVDVENLKAYSKELDSRLVIL 535 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277 + +I + G + L + LF G+ + ++ T +L + + Sbjct: 536 ENEIY-MQAGETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTSAEVLEQLSYKHEIVER 594 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 IL + L + DG++ + TGR S QN+P Sbjct: 595 ILEYRQLMKLKSTYADGLLSVLEQDGKIHSNFNQTV-TATGRISSTEPNLQNIP------ 647 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396 +R I ++ L+ AD + IE RVLA I G+ Sbjct: 648 ------------------VKLEMGRKIRKVFIPTNSDYVLLDADYSQIELRVLAHITGDP 689 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I+AF N EDI+ TT +K F P ++VS R+ K + + Y G + Sbjct: 690 NMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIG-----DFSLSKD 744 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + + + + ++ EF L R Sbjct: 745 IGVTKKEARKYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNR---------RRYLPE 795 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + ++ G+ Sbjct: 796 LKSSNFNMRS-----------------------------------------------FGE 808 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHD 630 +NT Q + DI+ M K ++L VHD Sbjct: 809 RVAMNTPI------------------QGSAADIIKISMVKVYTELKKRKLKSKLILQVHD 850 Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ ET + V L M +PL + + Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 101/689 (14%), Positives = 188/689 (27%), Gaps = 156/689 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA + A + + L L Sbjct: 446 MQADLCGVALSLAPNDACYVPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSG 505 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121 ++ + + F ++ + GI + +++ L++ + Sbjct: 506 ILKIGFDVKFTAVMLAQH-GITLR--NTDDAQLISYVLDAGRGSHGLESLAERWFGHAML 562 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G K I + P ++ W++ + T +++ L Sbjct: 563 KEGELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAEHMTT--VYETL- 619 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +++ +I ++ + + Sbjct: 620 -----ERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAGEPV-NVGSP 673 Query: 239 YALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + LF + ++ T + + + IL S + Sbjct: 674 KQIGDILFGKMSLPGGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQVSKLKSTYTD 733 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L E V+ T A+ TGR S QN+P Sbjct: 734 ALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 771 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T Sbjct: 772 --VRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTA 829 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F PI + E R K + G+ Sbjct: 830 SEMFGVPIKGMPSEIRRRAKAINF--------------GIIYGIS--------------- 860 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + K + + G+ + + Sbjct: 861 ---------------AFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDFCRQHGY 905 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 R+ Y D+K + + R Sbjct: 906 VTTLF--------------------------GRKCHYPDIKASNASVRAF---NERAAIN 936 Query: 594 GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF-SVGT 646 Q + DI+ M K ++L VHDE++ E PD ++ Sbjct: 937 ARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPV 990 Query: 647 LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL + AK + Sbjct: 991 VQHVMQDAPFPAVLLSVPLHVDARAAKNW 1019 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 96/697 (13%), Positives = 183/697 (26%), Gaps = 157/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MPS 55 ++ D+ET + K + +W M + Sbjct: 377 QVAFDVETT-DIDVMKAVP---------VGFSLSWKAGEAWYVPLVAGGKTVSNEKAMKA 426 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 + ++L + + + N ++ + + G+ I T V A ++ Sbjct: 427 VVKKHLENPALGVIGQNLKYDYKVMARW-GVRIA-NPVFDTMVAAWLLDSASGIYNMDKL 484 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K + +Y D + T Sbjct: 485 ADKYLGYVTITYDQVVPKGAL------------------FSDVPLDKAVQYAAEDADVTW 526 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L++ P+ D E L + + G R+D+D ++ E I +K+ Sbjct: 527 RLYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKIT 586 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLI 278 +I +L + L+ LF G+ + + T L LI Sbjct: 587 REIYELCGHEF-NINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPALI 645 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ ++ L E V + GR+ T G + TGR + QN+P Sbjct: 646 LDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTG-TATGRLASRNPNLQNIP------ 698 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +RS + G + AD A IE VLA + G++ Sbjct: 699 ------------------IRNDDGRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEG 740 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+D++ T + FN + V+ +QR I K + + Y L Sbjct: 741 LREAFLAGQDVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTFRLSNE-----L 795 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + S F+ + ++ + + E + G + + Sbjct: 796 AISHSQAAEFIDSYFKRYHGVKTFVDETRKKAEETGFVSTMFGHERHV---------PEI 846 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + G VV +L + Sbjct: 847 RSSNRMEKSGAERVVVNTIIQGTAADI---------------------MKLAMLRI---- 881 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + L L ++ E Sbjct: 882 ------SRSLKDSGINARLL-----------------LQVHDE-----------LIFEVA 907 Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + L M K +PL++ + Sbjct: 908 SGQEEKLSVLVKDAMEKAVK--LSVPLRSSVETGASW 942 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 94/700 (13%), Positives = 190/700 (27%), Gaps = 164/700 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60 + ID ET S A + + ++ + + + + Sbjct: 340 KYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIEAKGKVYIEKHYII 389 Query: 61 -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113 L + N F+ + K G D P + T + A SL Sbjct: 390 QKFNNLFKSKPKIIGQNYKFDYKILKNN-GFD-PIPPYFDTMIAAYLIDTNSKVSLDFLA 447 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K + ++ Y D + T Sbjct: 448 EKYLMHKNIKYEDVIQKN------------------DNFAHISLEMATSYSSEDADITFR 489 Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 LF + E + + + G +D + + + + + +E + ++ Sbjct: 490 LFNVFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIEN 549 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLILN 280 +I+K + + LF + L D + T +L + + ++ Sbjct: 550 EIIKSIGIDF-NLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIK 608 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L+E ++ RL + TGR + QN+P Sbjct: 609 HRQIAKLKSTYTDNLTELINYKTNRLHTNFIQTK-TATGRITSINPNLQNIP-------- 659 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R NG + AD + IE +LA ++ ++ I Sbjct: 660 ----------------IKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLI 703 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 KAF N +DI+ T +K F +++ R I K + + Sbjct: 704 KAFENNKDIHAETASKLFKIEEKEITPNLRRIAKSIN--------------FGIIYRMSD 749 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A + + + ++ + + + Sbjct: 750 FRL------------------------------AKELGITKEEAKGFINSYFDSYPKIKE 779 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + S RR ++ + Sbjct: 780 FITNQINFVRNTGYSETI--------------------------SKRRRYIKEINSNNYL 813 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIV 633 +A R +I+Q + DI+ M K I+L VHDE++ Sbjct: 814 ERSAA---ERIAI------NSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEML 864 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+P + M + ++ LPL+A K + Sbjct: 865 IESPIEEENETKKILKNMMET-AYTLSLPLRANIETGKSW 903 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 189/699 (27%), Gaps = 151/699 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---------SAM- 53 + +D ET S + + + + + Sbjct: 357 VAVDTETASLDSVT----------GRLVGVSLSTGAGKACYIPLGHGGTDMFAEKPEQIA 406 Query: 54 ----PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106 L D+ V+ V HN ++ + + + + T +++ Sbjct: 407 MGDALERLGALFADDAVLKVGHNLKYDIGVLAQH---GVTVAPYDDTLLMSFALDAGKHQ 463 Query: 107 SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 L L+ K GK+ I+ + Y A Sbjct: 464 HGLDELAKLHLDHVCLSFKDVCGTGKSQISFAEVQLDRATEYAAEDAEVAWRLWK----- 518 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + E R+ + D R L + + + G +D D + KL A E +++ + Sbjct: 519 LLKLRLPLEGGTRVYEMVD--RPLAAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGE 576 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLI 278 I L + L LF G+ + + I Sbjct: 577 IHALAGQPF-AIGSPRQLGEILFDKMGLKGGRKGKSGDWSTDQNELERLERDGVPIARKI 635 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + + L E V+ + GR+ + GA +TGR S QN+P Sbjct: 636 LEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGA-QTGRLSSTDPNLQNIP------ 688 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA+ G L+ AD + IE R+ A +A Sbjct: 689 ------------------IRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPE 730 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AFA G+DI+ T + F +V+++ R K + ++ Y L Sbjct: 731 LKEAFARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYG-----ISRWGLAGRL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + FE + + + + L G + Sbjct: 782 EITPDEAQALISRYFERFPGISDYISDTLETARARGYTETLFGRK---------TWFPRI 832 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 ++ E +I+A L+ R R + + Sbjct: 833 KAANQN-----ERAGSERAAINAPIQGTSADLIKRAMARMPGALADAGL----------- 876 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 D+ + + +V E P Sbjct: 877 -----------------------------ADV--KMLLQVHDE-----------LVFEAP 894 Query: 638 DTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 + + G + +M P+ +PL+ E K + Sbjct: 895 EDKAAAAGEVIRAVMMGAAEPALKLSVPLEVEIGTGKSW 933 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 96/691 (13%), Positives = 199/691 (28%), Gaps = 151/691 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET ++A I ++ ++ T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366 Query: 56 DLLQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112 + + + HN ++ + + +++ +++ T +LA ++ + Sbjct: 367 SAKKAIEAIFNHFVIGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDL 425 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L N+ + K + + A+ Y Sbjct: 426 ALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNLET 479 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E D + + + G ++D + + L + E K L E+I Sbjct: 480 PLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TLCED 535 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + + T + +L+ IL+ + Sbjct: 536 RFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLY 595 Query: 289 ILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + + R+ + G + TGR S QN+P + + Sbjct: 596 STYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------ 648 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +SC +A +G + D + IE R+LA + ++ + AFAN E Sbjct: 649 ------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDE 690 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F + + E R++ K + L Y G Sbjct: 691 DIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG---------------------- 724 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 Y + K+ + + + + + ++ + Sbjct: 725 ----------------------YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKN 762 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 IV S R+ Y + ++ Sbjct: 763 EAKQNG--------------------------FIVTLSGRKR----------YFDFENAK 786 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643 M+ Y + +I+Q + D++ M K ++L +HDE++ E D + Sbjct: 787 PMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCEN 846 Query: 644 -VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V +M + LK AK + Sbjct: 847 FVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 201/694 (28%), Gaps = 157/694 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET ++A I ++ ++ T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366 Query: 56 DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 + + V+ + HN ++ + + +++ +++ T +LA ++ Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNM 422 Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L L N+ + K + + A+ Y Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKN 476 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + E D + + + G ++D + + L + E K L E+I Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + LF + + T + +L+ IL+ + Sbjct: 533 CEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELA 592 Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L + + R+ + G + TGR S QN+P + + Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +SC +A +G + D + IE R+LA + ++ + AFA Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFA 687 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N EDI+ T F + + E R++ K + L Y G Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 Y + K+ + + + + + ++ Sbjct: 725 -------------------------YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEK 759 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + IV S R+ Y + Sbjct: 760 VKNEAKQNG--------------------------FIVTLSGRKR----------YFDFE 783 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH] gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH] Length = 872 Score = 320 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 102/692 (14%), Positives = 195/692 (28%), Gaps = 163/692 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD 56 + D ET S E I ++A++ +P Sbjct: 320 KIVAFDTETDSL------------ENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367 Query: 57 -----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSL 109 + + L + HN F+ + KK G++I T +LA P L Sbjct: 368 TALKAIQKIL---DKKVIGHNLKFDFKMLKKY-GLEI-PTPHADTMILAWILDPDSPVGL 422 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L+ K GK K + + + A Y + Sbjct: 423 DSVAKRYLDHQNIKFKEVIGKR------KNFSEVDIQEAAKYAAEDALISLKLYEILKEK 476 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+ + + E L I +G ++D++ + KLQ ++ + L ++I + Sbjct: 477 LWEEVK---WDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQEIYRYA 533 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + T L LF + + + ++ T + +L+ T + +L Sbjct: 534 GSEF-NIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLLEYRKLD 592 Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L E + ++ G + TGR S QN+P Sbjct: 593 KLLSTYIIPLQEYAKKDPNHKIYTNFLQTG-TATGRLSSKNPNLQNIP------------ 639 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A + V D + IE R+LA + ++ I AF Sbjct: 640 --------------TSTDINIRDAFVAEK--EFVSLDYSQIELRLLAHFSKDEHLINAFL 683 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +DI++ T K F + +KE R + K + L Y G Sbjct: 684 EDKDIHLETAVKIFG---ENRAKEYRPVAKSINFGLIYGMGP------------------ 722 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + + + + A V ++ Sbjct: 723 --------------------------KKLSETINVSTKEAKEFIEKYFASFPTVKTFLEN 756 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + RR + A Sbjct: 757 TKIEAREKGYVETLLKRRRFFDF------------------------------------A 780 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GYDIVLTVHDEIVSETPDTPY 641 + + + I Q + DI+ + M + ++L +HDE++ E Sbjct: 781 AANARTLANFEREAVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIFEI--DSR 838 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK KR+ Sbjct: 839 DEAYEYKKIMQNVFK--LEVPLKVGISFGKRW 868 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 Y E+ I + ++ + + +++ ++ +S R + Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDTAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383 Query: 82 -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137 + GI++ + T + A +S + ++ E K Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 G+ + P + + H+ L + + + E +L + E L L+ + Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D+D + ++ E + + K+ +E I ++ + L + LF G+ +V + Sbjct: 496 GVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L D IL + L + D T Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P +R + S Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE RVLA I+ ++ I+AF N DI+ T F+ D+V+ R K Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ SQN Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + QGV +D + + R +P L R Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + + +NT +Q + DI+ + Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + ++L VHDE++ E P + L +M A +PLK + Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869 Query: 667 GYEAKRY 673 + Sbjct: 870 FASGPSW 876 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 91/663 (13%), Positives = 196/663 (29%), Gaps = 138/663 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I +E + R E + +++ DE+ + +++ + ++ GID Sbjct: 330 GEIIGFGLK--NEKGLFFLRAEDALSSEAFKKWVEDESKIKHVYDAKRSIVALRRY-GID 386 Query: 88 IPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARF--CKGSID 141 + + +++ ++++ ++ + GK + K + Sbjct: 387 LRGTDF-DLLLVSYLLNPSDTVEDFASVAKTHDYGNVETDEAVYGKGAKRKLPEEKRYAE 445 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + +E +L E L L+ + G ++ Sbjct: 446 HISRKAEAIDALCEPCTKALKNNGQLELFEQL----------ELPLSLILADMEYTGVKV 495 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D D + ++ E ++++ I + + L + LF G+ ++ ++ Sbjct: 496 DTDRLKEMGEEFKLRLHEIEQRIYSMAGTEF-NINSPKQLGVILFEKMGLPVIKKTKTGY 554 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ + L + V DG++ ++TG Sbjct: 555 STSADVLEKLEPAHEIVREILHYRQLGKLQSTYIEGLLKVVHQDGKVHTRFNQA-LTQTG 613 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 614 RLSSTDPNLQNIP------------------------IRMEEGRKIRQAFVPSEEGWLIF 649 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 +D + +E RVLA I+G++ I+AF G DI+ T + F+ ++V+ E R K + Sbjct: 650 SSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNF 709 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 710 GIVY-----GISDYGLSQNL---------------------------------------G 725 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + A + V + ++ S +R +P + R Sbjct: 726 ISRKEAGEFIKRYFASYPRVKEYMDEIVREAKQKGYV--STLLKRRRYLPEITSRNFNL- 782 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 783 --------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDM 810 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L VHDE++ E P+ + + +M A PLK + Sbjct: 811 AKRLKKEKLRARLLLQVHDELIFEAPEEEIEVLKEIVPEVMEHAVDLAA--PLKVDSAYG 868 Query: 671 KRY 673 + Sbjct: 869 PTW 871 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 Y E+ I + ++ + + +++ ++ +S R + Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDDQKKWVFDSK--RAVVA 383 Query: 82 -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137 + GI++ + T + A +S + ++ E K Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 G+ + P + + H+ L + + + E +L + E L L+ + Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D+D + ++ E + + K+ +E I ++ + L + LF G+ +V + Sbjct: 496 GVKVDVDRLKRMGEELGTKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L D IL + L + D T Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P +R + S Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE RVLA I+ ++ I+AF N DI+ T F+ D+V+ R K Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ SQN Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + QGV +D + + R +P L R Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + + +NT +Q + DI+ + Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + ++L VHDE++ E P + L +M A +PLK + Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869 Query: 667 GYEAKRY 673 + Sbjct: 870 FASGPSW 876 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 190/701 (27%), Gaps = 170/701 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------AM 53 D ET S + A I +++ + Sbjct: 331 IFSFDTETTSLE----------VRSAKIVGFSFSVNGVDSYYVPIAHNYLGVEEQVSYEC 380 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPS--SLK 110 + ++Y+ + HN ++ + K + + + +LA + +L Sbjct: 381 AKEFIEYIF-GCKYVIGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLLQSDALCNLD 439 Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N K K Q EY D A Sbjct: 440 FLMKKYFNHEMIHYKDIVHKK------------------ENFSQILIQYACEYASEDAAA 481 Query: 170 TRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L+ +L L D E + G +IDL+ +L + ++ Sbjct: 482 CYQLYFKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQI 541 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDL 277 E+I L + + L LF + ++ T +S+L+ T Sbjct: 542 SEEIFALANKRF-NLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPK 600 Query: 278 ILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL + LSE +D R+ + G + TGR S QN+P Sbjct: 601 ILEYREFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTG-TSTGRLSSKNPNLQNIP---- 655 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA LV D + IE R+LA + + Sbjct: 656 --------------------VKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSED 695 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + I+AF DI++ T K F + +++E+RAI K + L Y G Sbjct: 696 EAMIEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGP---------- 742 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + K+ + + + Sbjct: 743 ----------------------------------KKLSETLKITFQEAKTYIQNYFTSFP 768 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V + K+ E + R + + + + Sbjct: 769 TVKEFLKNQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREG-------------- 814 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIV 633 I Q + DI+ M TK ++L VHDE++ Sbjct: 815 ----------------------INAIFQGSAADIIKMAMNAITKANLESKLLLQVHDELI 852 Query: 634 SETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E P + +M + +PLK + + Sbjct: 853 FEAPKEIAKKESEEIAKIMENITT--LKVPLKCTISIGENW 891 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 105/699 (15%), Positives = 194/699 (27%), Gaps = 157/699 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----------QSAM 53 + +D ET S L + + + D ++ + Sbjct: 334 VALDTETNSLDQLKT----------RLVGISLSTDIGKAWYIPVAHQVELGCNQLMKAEV 383 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN 111 + +L E + N+ ++ +F GI + + T VLA L+ Sbjct: 384 LEAMRSWLESEQKTKILQNAKYDMHVFAN-EGIVLKGIK-HDTMVLAYVIDTNQRVGLEA 441 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 LN + GK +Y D + T Sbjct: 442 LSLKYLNRKGLSYEEICGKGAK---------------AITFDYVPLDQATQYACEDADFT 486 Query: 171 RELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L+P + E + + + G ID +L E+I+ KL Sbjct: 487 FHLLTELLPKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKL 546 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKD 276 + +I L + L LF ++ + T + L + Sbjct: 547 ESEIFNLAGEEF-NINSPKQLSEILFTKLKLETQGKTRTGVISTNEDALEKLALDHPIAV 605 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + S + L ++ GR+ GR S QN+P Sbjct: 606 HLLEYRSLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLS-GRLSSFDPNLQNIP---- 660 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A +G KL+ AD + +E R++A I+ + Sbjct: 661 --------------------IRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISND 700 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + +KAF G DI+ +T ++ F P+ +V QR K + L Y G A Sbjct: 701 EGMLKAFKEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMG-----AFALAN 755 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + F+ + + ++ Q + + + G + Sbjct: 756 NLGISRETAQNYIYKYFDRFPKVRKFMDDIKIQASQDGYVETIYGRRIYI---------P 806 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 G+ K + V + + ++ HK L S Sbjct: 807 GIQDS-KGARKAALERVAINAPVQGSAADIIKMAMISVHKWISQNKLNSR---------- 855 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 I+ +VL VH Sbjct: 856 ---------------------------------II----LQVHDE---LVLEVH------ 869 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ + L LM +PL+A+ + Sbjct: 870 --ESEIEILKLKLPKLMEDVAK--LDVPLEAQVNVGSNW 904 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 200/694 (28%), Gaps = 157/694 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET ++A I ++ + T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQ 366 Query: 56 DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 + + V+ + HN ++ + + G+++ +++ T +LA ++ Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNM 422 Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L L N+ + K + + A+ Y Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKN 476 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + E D + + + G ++D + + L + E K L E+I Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + LF + + T + +L+ IL+ + Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELA 592 Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L + + R+ + G + TGR S QN+P + + Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +SC +A +G + D + IE R+LA + ++ + AFA Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N EDI+ T F + + E R++ K + L Y G Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 Y + K+ + + + + + ++ Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + I S R+ Y + Sbjct: 760 VKNKAKQNG--------------------------FITTLSGRKR----------YFDFE 783 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 Y E+ I + ++ + + +++ ++ +S R + Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383 Query: 82 -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137 + GI++ + T + A +S + ++ E K Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 G+ + P + + H+ L + + + E +L + E L L+ + Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D+D + ++ E + + K+ +E I ++ + L + LF G+ +V + Sbjct: 496 GVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L D IL + L + D T Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P +R + S Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE RVLA I+ ++ I+AF N DI+ T F+ D+V+ R K Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ SQN Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + QGV +D + + R +P L R Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + + +NT +Q + DI+ + Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + ++L VHDE++ E P + L +M A +PLK + Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869 Query: 667 GYEAKRY 673 + Sbjct: 870 FASGPSW 876 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 97/693 (13%), Positives = 202/693 (29%), Gaps = 155/693 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM--- 53 S + D ET ++A I ++ + T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQ 366 Query: 54 -PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110 ++ + + V + HN ++ + + G+++ +++ T +LA ++ Sbjct: 367 SAKKAIELIFNHFV--IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMD 423 Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L L N+ + K + + A+ Y Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 477 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L + E D + + + G ++D + + L + E K L E+I Sbjct: 478 EAPLLELAKNC---EFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIY-TLC 533 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF + + T + +L+ IL+ + Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDYRELAK 593 Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L + + R+ + G + TGR S QN+P + + Sbjct: 594 LYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 648 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +SC +A +G + D + IE R+LA + ++ + AFAN Sbjct: 649 --------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFAN 688 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T F + + E R++ K + L Y G Sbjct: 689 DEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG-------------------- 724 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 Y + K+ + + + + + ++ + Sbjct: 725 ------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETV 760 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 I +SR+ Y + Sbjct: 761 KNEAKQNG--------------------------FITTLNSRKR----------YFDFEN 784 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 785 AKPMQIAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIFEVKDDLC 844 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 845 ENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 102/667 (15%), Positives = 197/667 (29%), Gaps = 134/667 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 Y E+ I + ++ + + +++ ++ +S R + Sbjct: 329 DNYHEEP-ILGFSI-VNETGAYFIP-KDIAVESEVFKEWVENDEQKKWVFDSK--RAVVA 383 Query: 82 -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137 + GI++ + T + A +S + ++ E K Sbjct: 384 LRWQGIELKGAEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------K 435 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 G+ + P + + H+ L + + + E +L + E L L+ + Sbjct: 436 GAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMEST 495 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D+D + ++ E + + K+ +E I ++ + L + LF G+ +V + Sbjct: 496 GVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKT 554 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L D IL + L + D T Sbjct: 555 KTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQAL 614 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P +R + S Sbjct: 615 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKD 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE RVLA I+ ++ I+AF N DI+ T F+ D+V+ R K Sbjct: 651 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAK 710 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ SQN Sbjct: 711 AVNF--------------GIVYGISDYGLSQN---------------------------- 728 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + QGV +D + + R +P L R Sbjct: 729 --LGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYV--TTLMHRRRYIPELTSRN 784 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + + +NT +Q + DI+ + Sbjct: 785 FN---------------IRSFAERTAMNT------------------PIQGSAADIIKKA 811 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + ++L VHDE++ E P + L +M A +PLK + Sbjct: 812 MIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPLKVD 869 Query: 667 GYEAKRY 673 + Sbjct: 870 FASGPSW 876 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 202/694 (29%), Gaps = 157/694 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET ++A I ++ ++ T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366 Query: 56 DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 + + V+ + HN ++ + + G+++ +++ T +LA S ++ Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSSRVNM 422 Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L L N+ + K + + A+ Y Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLDFLKN 476 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + E D + + + G +++ + + L + E K L E+I Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIY-TL 532 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + LF + + T + +L+ IL+ + Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILDYRELA 592 Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L + + R+ + G + TGR S QN+P + + Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +SC +A +G + D + IE R+LA + ++ + AFA Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N EDI+ T F + + E R++ K + L Y G Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 Y + K+ + + + + + ++ Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + I S R+ Y + Sbjct: 760 VKNEAKQNG--------------------------FITTLSGRKR----------YFDFE 783 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 200/694 (28%), Gaps = 157/694 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET ++A I ++ + T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGEQISLQ 366 Query: 56 DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 + + V+ + HN ++ + + G+++ +++ T +LA ++ Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNM 422 Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L L N+ + K + + A+ Y Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYISLRFYLYFLKN 476 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + E D + + + G ++D + + L + E K L E+I Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + LF + + T + +L+ IL+ + Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELA 592 Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L + + R+ + G + TGR S QN+P + + Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +SC +A +G + D + IE R+LA + ++ + AFA Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N EDI+ T F + + E R++ K + L Y G Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 Y + K+ + + + + + ++ Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + I S R+ Y + Sbjct: 760 VKNKAKQNG--------------------------FITTLSGRKR----------YFDFE 783 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 105/688 (15%), Positives = 202/688 (29%), Gaps = 143/688 (20%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS----------DLLQYLR 62 + A + + ++ ++D+ + L L Sbjct: 326 VVSIQVETTRKDAMASDLAGLSFGFEDDGAWYVPLGPDGSEGDGRLPAAVALAALEPVLG 385 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNF 118 + H+ I+FKK GI++ + T V A + L Sbjct: 386 RSRPAKIGHDLKTAWIVFKKH-GIELRGIAF-DTMVAAYLLDPGKQNYGIDRVAAECLGE 443 Query: 119 SEHLTKMEEGKA--LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + GK + + Y C A+ + + + T ELF++ Sbjct: 444 NIDSYEDVTGKGKSQVGFDTIDIGRAAAYSCAAADAARRMHPVLKRKLDESRLT-ELFEK 502 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E L + + RG D + + L + + + I L + + Sbjct: 503 I------ELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAKEKF-NIQ 555 Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF G+ +V ++ T ++L + D +L + + Sbjct: 556 SPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVFRTLAKLKGTYAD 615 Query: 294 TLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + ++ GR+ + A TGR S QN+P Sbjct: 616 ALGKLINPRTGRIHTSYNQTVA-ATGRLSSSDPNLQNIP--------------------- 653 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +RS I + G L+ AD + IE R+LA + ++ ++AF + EDI+ T Sbjct: 654 ---IRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRT 710 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ F +V+ E R K + G+ +Q + Sbjct: 711 AAEMFGVSPIEVTPEMRRQAKTINF--------------GIIYGMGPFGLAQRL------ 750 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 ++ + ++GV + E + Sbjct: 751 ------------------------RISTKTARTAIDKYFQGYRGVRRFIDTTIELARRLG 786 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR +++ + +L Sbjct: 787 YSETLL--------------------------GRRRFIPELQSRNKTIRQLGERL----- 815 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGT 646 +Q + D++ + M +A G ++L VHDE+V ETP + Sbjct: 816 ----AINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQE 871 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L +M W +PLK E + Sbjct: 872 LVRRVMEDV--WKLDVPLKVELGWGDNW 897 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 95/701 (13%), Positives = 192/701 (27%), Gaps = 165/701 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY- 60 + + ID ET S A + + ++ + + + + Sbjct: 341 NYISIDTETSSLDTYT----------AKLIGISISFKEFEGYYIPIETKGKIYIEKHYII 390 Query: 61 -----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113 L + N F+ + K IP + T + A SL Sbjct: 391 QKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLA 448 Query: 114 L-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + K + ++ Y D + T Sbjct: 449 EKYLMHKNIKYEDVIQKN------------------DNFANISLEMATSYSCEDADITFR 490 Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 LF + E + + + G +D + + + + + +E + ++ Sbjct: 491 LFNIFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIEN 550 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLIL 279 +I+K + + LF + L +K + S + +LI Sbjct: 551 EIIKSIGIDF-NLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIK 609 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +R + + + L E ++ RL + + TGR + QN+P Sbjct: 610 HRRIAKLKST-YTDNLIELINYKTNRLHTSFIQT-RTATGRITSINPNLQNIP------- 660 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -----------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDETL 703 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 IKAF N +DI++ T +K F Sbjct: 704 IKAFENNKDIHIETASKLFKI--------------------------------------- 724 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + K T ++ + + + A + + + ++ + + Sbjct: 725 ----EEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIK 780 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + + RR Y + Sbjct: 781 EFIINQINFVKNTGYSETILKRRR---------------------------YIKEINSNN 813 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEI 632 YL S R + +Q + D + M K I+L VHDE+ Sbjct: 814 YL--ERSAAERIAI------NSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHDEM 865 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + E+P V + +M + ++ LPL+A K + Sbjct: 866 LIESPIKEENEVKKILKIMMET-AYTLNLPLRANIETGKSW 905 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 191/707 (27%), Gaps = 162/707 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA--WDDE-------PVKLWDRTEQS--- 51 I IET + QA I ++A DE Sbjct: 351 FSISIETTCADYM----------QAKIVGFSFALQVADENSAEITIEAFYLPLAHDYIDA 400 Query: 52 -------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 A L L V N F R + + GI++ + + + Sbjct: 401 PAQLEYLATLDKLKPLLEKIAPQKVVFNLKFMRSVL-RLEGINLQGVAF-DPMLESYLLD 458 Query: 105 LPSSLKNAC---LALNFSEHLTKMEEGKALIA--RFCKGSIDSPPYDCTRANHVQAWQLF 159 A L + GK D PY L Sbjct: 459 STGKHDKASLTLKYLQIEIASYEAIAGKGKKQLPFNQVSIKDITPYVGEHVELSLRLHLL 518 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L++ D E L ++ + G ID ++ I + + Sbjct: 519 LWPKLEKFPKLVALYE------DIELPLAIVLSDVELGGVEIDATMLGAQSVEIGKRLLE 572 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAK 275 ++++ + L+ LF + + + T + +L T Sbjct: 573 IEKEAYIEAGKEF-NLSSPKQLQSILFEDLELPILKKTPKGAPSTGEEVLVELAETYKLP 631 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L++ S + L + ++ GR+ + + TGR S QN+P Sbjct: 632 KLVIEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAV-TVTGRLSSSDPNLQNIP--- 687 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G K+V AD + IE R++A ++ Sbjct: 688 ---------------------IRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQ 726 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + ++AF+ G DI+ T ++ F+ +D+V+ QR K + Sbjct: 727 DKGLLEAFSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINF--------------GLI 772 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ A + K+ + +L + ++ Sbjct: 773 YGMS------------------------------AFGLAKQLKISRSDAKLYMDKYFHRY 802 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 GVL + + + RRL + Sbjct: 803 PGVLTYMQTTRDKAREQG--------------------------FVETILGRRLQLPHIN 836 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLT 627 R +Q + DI+ + M + + +++ Sbjct: 837 SRN---GILKKASERAAINAP------MQGTAADIIKKAMLDVAAWVEKQAPSQVQLLMQ 887 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V + + + +M K +PL AE + Sbjct: 888 VHDELVFCIKEDQVENYTCIIQEIMAKAV--ILDVPLLAEVGVGNNW 932 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 93/696 (13%), Positives = 186/696 (26%), Gaps = 143/696 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-----DEPVKLWD--------RTE 49 ++ ID+ET PL I A AW + Sbjct: 376 QICIDLETTGLDPLRD----------EIVGWAIAWAAQHGQPGRAVYLPVLGPPGSVLLD 425 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGL--- 105 +A+ L L + + N F+ + +K + I + T V Sbjct: 426 GTAVVQTLKPILENPQCQLINQNVKFDLLAMRK---VGIRPATIGLDTMVGDYLLDAGAR 482 Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +L+ L+ + G + + + ++ Sbjct: 483 SHNLEVLGQKYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDAELVVRMAPIIES 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + EA +L + E+ L + + +G ++D+ + + + ++ +L +I Sbjct: 543 QLQEAGL---WKLYD--EVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARLMSEI 597 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 +L + LR LF + + ++ T + +L I Sbjct: 598 HELAGREF-NIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPLPAKITEH 656 Query: 282 LASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L+ L V GR+ + A TGR S QN+P Sbjct: 657 RHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVA-ATGRLSSSDPNLQNIP--------- 706 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + +LV AD + IE R+LA + + + Sbjct: 707 ---------------IRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALV 751 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF +GEDI+ A+ ++ V+ + R I K + + Y L + Sbjct: 752 SAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSP-----YGLSAALGI 806 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV-KKAWRAKHQGVL 518 + + F + + + D+ ++G + + R +++ Sbjct: 807 SREAATTFIDEYFTRYAGVTTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRN-- 864 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + ++ V Sbjct: 865 ------RNMAERTGINTVIQGSAADLI---------------------KMAMIRVHHRLE 897 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N + DE+V E P Sbjct: 898 RENHPGQL---------------------------LLQIH-----------DELVLEAPA 919 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +G L MTK +PL+ + + Sbjct: 920 HLAEELGALVSEEMTKALP--LDVPLEVDVAIGTNW 953 >gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] Length = 896 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 103/702 (14%), Positives = 189/702 (26%), Gaps = 170/702 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------A 52 S D ET S +A I +++ + Sbjct: 331 SIFSFDTETTSLD----------VRKAKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLE 380 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPS--SL 109 + ++ + + HN ++ + K + + + +LA + +L Sbjct: 381 CARECIEQIFQSQY-VIGHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDTLCNL 439 Query: 110 KNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 N K GK Q EY D Sbjct: 440 DFLMKKYFNHEMIHYKDIVGKN------------------ENFSNILIQHACEYASEDAA 481 Query: 169 ATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 A +L+ +L L D E + G +IDL+ L L ++ + Sbjct: 482 ACYQLYFKLRGLMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQ 541 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKD 276 + E+I L + + L LF ++ ++ T + +L+ + Sbjct: 542 ISEEIFVLANKRF-NLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIP 600 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL S + L E SD R+ + G + TGR S QN+P Sbjct: 601 KILEYRESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTG-TSTGRLSSKNPNLQNIP--- 656 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 L +R IA L+ D + IE R+LA + Sbjct: 657 ---------------------VKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQ 695 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + I AF DI++ T K F +++++E+RA+ K + L Y G Sbjct: 696 DKAMIDAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGP--------- 743 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + K+ + + + Sbjct: 744 -----------------------------------KKLSETLKINFQEAKTYIQNYFTSF 768 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + K+ E + R + + + + Sbjct: 769 PMIKNFLKEQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREG------------- 815 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDIVLTVHDEI 632 I Q + DI+ M ++L VHDE+ Sbjct: 816 -----------------------INAIFQGSAADIIKMAMNKIMHSSLESKLLLQVHDEL 852 Query: 633 VSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + E P + +M + +PLK + + Sbjct: 853 IFEAPKEIASKEAKKIALIMENIAT--LRVPLKCSISIGENW 892 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 190/689 (27%), Gaps = 156/689 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA + + A + + L L Sbjct: 457 MQANLCGLSLALAPGEACYIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTG 516 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121 ++ + +N F + GI + +++ L + L + Sbjct: 517 LLKIGYNIKF-LAVLLAQHGITLQ--NVDDILLMSYALDAGRGSHKLDSLAEHVLAHAII 573 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLI 178 G K + + + A+ + + W++ E +++ L Sbjct: 574 SEGELIGSGKNKLTFEQVAIDRATAHAAEAADVIHRVWRVLKPRLT--AERMTAVYETL- 630 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +++ ++ +L I + Sbjct: 631 -----ERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAARVEAELQELAGEPI-NVGSP 684 Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293 + LF G+ ++ T SIL IL S + Sbjct: 685 KQIGDILFGKMGLSGGTRTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTD 744 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L V+ T A+ TGR S QN+P Sbjct: 745 ALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 782 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T Sbjct: 783 --VRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTA 840 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F PI + E R K + G+ Sbjct: 841 SEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS--------------- 871 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + K + + G+ + E Sbjct: 872 ---------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREFCRKNGY 916 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 +V R+ Y ++K + + R Sbjct: 917 --------------------------VVTLFGRKCHYPEIKASNASVRAF---NERAAIN 947 Query: 594 GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGT 646 Q + DI+ M + ++L VHDE++ E P+ ++ Sbjct: 948 ARL------QGTAADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAATLPV 1001 Query: 647 LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL + A + Sbjct: 1002 VQHVMQDAPFPAVLLSVPLHVDARAADNW 1030 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 201/694 (28%), Gaps = 157/694 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET ++A I ++ ++ T + Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366 Query: 56 DLLQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 + + V+ + HN ++ + + +++ +++ T +LA ++ Sbjct: 367 SAKKAIE---VIFNHFVIGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNM 422 Query: 110 KNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L L N+ + K + + A+ Y Sbjct: 423 DDLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKN 476 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + E D + + + G ++D + + L + E K L E+I Sbjct: 477 LETPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIY-TL 532 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + LF + + T + +L+ A IL+ + Sbjct: 533 CEDRFNLNSPKQVGDILFEKLKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILDYRELA 592 Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L + + R+ + G + TGR S QN+P + + Sbjct: 593 KLYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY--- 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +SC +A +G + D + IE R+LA + ++ + AFA Sbjct: 649 ---------------------KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFA 687 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N EDI+ T F + + E R++ K + L Y G Sbjct: 688 NDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG------------------- 724 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 Y + K+ + + + + + ++ Sbjct: 725 -------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFET 759 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + I S R+ Y + Sbjct: 760 VKNEAKQNG--------------------------FITTLSGRKR----------YFDFE 783 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTP 640 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 784 NAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDL 843 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 844 CENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70] gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70] Length = 878 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 105/658 (15%), Positives = 204/658 (31%), Gaps = 131/658 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86 I A A +E + RT+ + S Q+L DE+ S+F+ I+ K GI Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTQWLEDESKKK----SVFDGKRAIVSLKWQGI 387 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + ++ + + S ++ + I + KG+ P + Sbjct: 388 QLRGVQF-DLLIASYLLNPSQSTEDVASI--AKTKQYTDVQSDEAI--YGKGAKQKIPDE 442 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H+ ++D + ++ +D E L + + G +ID+ + Sbjct: 443 PVLAEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKRL 502 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++ E + ++ K+++++I +L + L + LF + ++ ++ T Sbjct: 503 KEMGEELTEQLKEIEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAE 561 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L + IL+ + L + V D T+ ++TGR S Sbjct: 562 VLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLSST 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R + + AD + Sbjct: 622 EPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWVIFSADYS 657 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA IA ++ I AF + DI+ T F+ D+V+ R K + + Sbjct: 658 QIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIV-- 715 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN + Sbjct: 716 ------------YGISDYGLSQN------------------------------LNITRKE 733 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 K + GV Q KD+ + + R +P + R Sbjct: 734 ASEFIKRYFEIFPGVKQYMKDIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL------ 785 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 + + +NT +Q + DI+ + M + Sbjct: 786 ---------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLSNRLK 818 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M +PLK + + + Sbjct: 819 KENMKARMLLQVHDELILEAPKEEVERLQQIVPEVMENAVQ--LRVPLKVDYHFGPTW 874 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 179/644 (27%), Gaps = 143/644 (22%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 ++L + + + H+ K GI++ + T + A S Sbjct: 371 QEALNELREIFESKDIEKYGHDLKNLYKYLKSH-GIELENV-IFDTFIAAYILEPTRSTY 428 Query: 111 NACLALNFSEHLTK----------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 E K + GK L S + C A + + Sbjct: 429 TISELY---EDKLKQSITPVEILYDKHGKRLQQEQDISSSEV----CAAAVNAIYVLIQK 481 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 EL+ + E L + + RG+++D++ + + + L Sbjct: 482 LRPIIRDNGQDELYY------EIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVIL 535 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277 + +I + G + L + LF G+ + ++ T +L + + Sbjct: 536 ENEIY-MQAGETFNINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVER 594 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 IL + L + DG++ + TGR S QN+P Sbjct: 595 ILEYRQLMKLKSTYADGLLSVLEQDGKIHSNFNQTV-TATGRISSTEPNLQNIP------ 647 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396 +R I + L+ AD + IE RVLA I + Sbjct: 648 ------------------VKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAHITDDS 689 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I+AF EDI+ TT +K F P ++VS R+ K + + Y G + Sbjct: 690 NMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIG-----DFSLSKD 744 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + + + + ++ EF L R Sbjct: 745 IGVTKKEARQYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNR---------RRYLPE 795 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + ++ G+ Sbjct: 796 LKSSNFNMRS-----------------------------------------------FGE 808 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 +NT Q + DI+ M ++L VHD Sbjct: 809 RVAMNTPI------------------QGSAADIIKISMVKVYNELKKRKLKSKLILQVHD 850 Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ ET + V L M +PL + + Sbjct: 851 ELIVETEKSELEEVSKLLKDCMENAVQ--LKVPLTVDVKHGDSW 892 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 96/694 (13%), Positives = 192/694 (27%), Gaps = 148/694 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD----- 56 + ID ET L I ++A + D + ++ + + Sbjct: 360 KLVCIDFETTGLDTLTD----------EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKL 409 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC 113 + L E + + HN +E + + + + + T V A ++ + Sbjct: 410 VFDTLAKEDIKIIGHNLKYEYKMM-RAIDKKM-GNMYFDTMVAAYLINPSRGRYNMDDLA 467 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TR 171 L+++ A D Y C A+ F Y T Sbjct: 468 LSYLSYNTIKYSDITDNAKKTLLDVELKDVVEYACEDAD-----ITFRFYEYFAPLLNTY 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + + G I + + L E A +K I + Sbjct: 523 NLEDLFFNV---EMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKIYEKAGEE 579 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L LF I+ ++ T + +L + + +L S Sbjct: 580 F-NLQSPKQLEYILFEKLKINSTKKTKTGAYSTDEEVLRELAQREKIAEYMLTYRKYSKL 638 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L+ V R+ + + TGR S QN+P Sbjct: 639 KNTYLDVFPTLVHKKTNRIHASFNQTV-TATGRLSSSEPNLQNIP--------------- 682 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 G +R+ IA G L+ AD + IE R+LA + + ++AF N + Sbjct: 683 ---------ARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKNND 733 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T K ++ + V+ R Sbjct: 734 DIHRKTAMKIYSVSKEHVTPSMRNTA---------------------------------- 759 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + + + K + + + V + + E Sbjct: 760 ----------KIINFSIIYGKTAFGLSKELNISRKEADDFIKGYFSTYSQVKPFCEKVIE 809 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + R S + + ++ Sbjct: 810 DVKAKGYVRTML--------------------------GRIRDLSKTINSSNAV--VRNE 841 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP 640 R ++Q + D++ M K IV+ VHDE+V E + Sbjct: 842 AERMA------LNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKE 895 Query: 641 YFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 T+ +M + +P+ + ++ + Sbjct: 896 SDKAMTIMKEIMEHSVK--TNVPITVDIHKGLSW 927 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 104/691 (15%), Positives = 202/691 (29%), Gaps = 151/691 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--- 57 S + D ET A +A I ++ + A+PS + Sbjct: 317 SIIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQ 366 Query: 58 --LQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112 + L + + HN ++ + + + P K++ T +LA ++ + Sbjct: 367 TAKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDL 425 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L ++ + K + A+ Y Sbjct: 426 ALRLFDYKTLHFESVVKKG------ENFASVELEKACNYAAEDAYITLRFYLYFLKNLEP 479 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L + E + + + + G +++ + L + +E K L E+I L D Sbjct: 480 NL---LKLGFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDDK 536 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + ++ T + +L + IL + Sbjct: 537 F-NLNSPKQVGDVLFEKLNLPSAKKTKTGYSTDEKVLENLVDKHPVVSKILAYRELAKLY 595 Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + D R+ + G + TGR S QN+P + + Sbjct: 596 STYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY------ 648 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +SC IA +G + D + IE R+LA + ++ ++AF N E Sbjct: 649 ------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDE 690 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F + + E R++ K + L Y G Sbjct: 691 DIHARTAIMIFG----ENNYETRSVAKSINFGLIYGMG---------------------- 724 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 Y + K+ + + + + A + ++ + Sbjct: 725 ----------------------YKTLSQNLKIEASLAKEYIEKYFANFTSIKSYFERVKN 762 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 I S R+ Y + A ++ Sbjct: 763 EAKINGY--------------------------ISTLSGRKR----------YFDFANAK 786 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643 M+ Y + +I+Q + DI+ M K ++L +HDE++ E D Sbjct: 787 PMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKDELCEK 846 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + LK AK + Sbjct: 847 FEKRARDIMENIVK--LKVNLKTSSSIAKNW 875 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 97/693 (13%), Positives = 197/693 (28%), Gaps = 155/693 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS---------A 52 S + D ET ++A I ++ + T Sbjct: 317 SIIAFDTETTGLD----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVSKQISLE 366 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110 ++ + + V + HN ++ + + G+++ +++ T +LA ++ Sbjct: 367 SAKKAIELIFNHFV--IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMD 423 Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L L N+ + K + + A+ Y Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 477 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L + E D + + + G ++D + + L + E K L E+I Sbjct: 478 EIPLLELAKNC---EFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIY-TLC 533 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF + + T + +L IL+ + Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYRELAK 593 Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L + + R+ + G + TGR S QN+P + + Sbjct: 594 LYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 648 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +SC +A +G D + IE R+LA + ++ + AF N Sbjct: 649 --------------------KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTN 688 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T F + + E R++ K + L Y G Sbjct: 689 DEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMG-------------------- 724 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 Y + K+ + + + + + ++ + Sbjct: 725 ------------------------YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETV 760 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 I S R+ Y + Sbjct: 761 KNEAKQNG--------------------------FITTLSGRKR----------YFDFEN 784 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641 ++ M+ Y + +I+Q + DI+ M K ++L +HDE++ E D Sbjct: 785 AKPMQIAMYERESINSILQGSAADIIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLC 844 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 845 ENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 96/704 (13%), Positives = 192/704 (27%), Gaps = 174/704 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD 56 S + D ET + L A I +++ D + + Sbjct: 323 SIVSFDTETTNLDVLC----------AKIVGFSFSLDGINAYYAPIAHSYLGVPEQISKE 372 Query: 57 L----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI---CTSVLARTN--GLPS 107 L + L + V + HN ++ + + K + + +LA +P Sbjct: 373 LALEFINSLFNAKV-VIGHNLKYDLEIL--HTNFNFTPKSYHNIKDSMLLAWLYQSDMPC 429 Query: 108 SLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 +L + + K K + Y D Sbjct: 430 NLDDLMARYFKHTMIAFKDIIKKG------------------ENFSQLPIENAFTYACED 471 Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 A +LF ++ L E + G +I++ L+ + ++ Sbjct: 472 AAACYQLFFKINSLLPKSLQEVANNVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKL 531 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLA 274 + L ++I L + + L + LF + ++ T S+L+ + Sbjct: 532 QALSQEIYTLANKRF-NLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPI 590 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L + L E S D ++ + G + TGR S QN+P Sbjct: 591 IPKVLEYRELFKLYSTYIEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIP- 648 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA G L+ D + IE R+LA Sbjct: 649 -----------------------VKTQQGRRIREGFIAQEGHLLLSLDYSQIELRLLAHF 685 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF DI++ T K F +++++E+R++ K + L Y G Sbjct: 686 SQDSAMIEAFHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLIYGMG-------- 734 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + ++ + + + Sbjct: 735 ------------------------------------ARKLSETLQINHQEAKSYIQNYFQ 758 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 V K+ E + R + + + + Sbjct: 759 SFPTVKNFLKEQEEFILKNGYSLTLLGRMRKFSFENIQEFQKVAFLREG----------- 807 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--TKNGYDIVLTVHD 630 I Q + DI+ M K ++L +HD Sbjct: 808 -------------------------INAIFQGSAADIIKLAMIQITQEKLESKLLLQMHD 842 Query: 631 EIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P + +M + +PL+ + Sbjct: 843 ELIFEAPKNIAETEAKKIAQIMESITT--LRVPLRCGVSLGANW 884 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 178/727 (24%), Gaps = 201/727 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---------------- 47 + D ET P + + + + Sbjct: 393 VAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTC 442 Query: 48 --------------------------TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A+ L + DET+ V HN F+ + Sbjct: 443 ARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH 502 Query: 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 + + + T V A + + K Sbjct: 503 RAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQ------ 556 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDL 187 ++ Y D + T L+ L + E L Sbjct: 557 ------------TFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPL 604 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + + G + D+V +L + ++ + DI L + L+ LF Sbjct: 605 LPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEF-NIGSPKQLQTVLFQ 663 Query: 248 ITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + T S+L + IL S +L++ GR Sbjct: 664 ELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGR 723 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + G + TGR S QN+P + Sbjct: 724 VHTSFVQIG-TATGRLSSRNPNLQNIP------------------------IKSTEGRKI 758 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R A+ G +L+ AD IE VLA ++ + + AF DI+ T A FN ID V Sbjct: 759 RQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDV 818 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R I K + G+ + S Sbjct: 819 QPAMRRIAKTINF--------------GIVYGMSAFRLSD-------------------- 844 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + K+ + + + GV + E Sbjct: 845 ----------ELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSL------- 887 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + RR + + ++ R +Q+ Sbjct: 888 -------------------AGRRRYIRTIDSRNTLER---ARAERMA------LNTQIQS 919 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + DI+ M + ++L VHDE++ E P V + + M Sbjct: 920 SAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE- 978 Query: 658 AKGLPLK 664 +PL+ Sbjct: 979 -LSIPLR 984 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 178/727 (24%), Gaps = 201/727 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---------------- 47 + D ET P + + + + Sbjct: 411 VAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTC 460 Query: 48 --------------------------TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A+ L + DET+ V HN F+ + Sbjct: 461 ARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH 520 Query: 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 + + + T V A + + K Sbjct: 521 RAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQ------ 574 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDL 187 ++ Y D + T L+ L + E L Sbjct: 575 ------------TFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPL 622 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + + G + D+V +L + ++ + DI L + L+ LF Sbjct: 623 LPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEF-NIGSPKQLQTVLFQ 681 Query: 248 ITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + T S+L + IL S +L++ GR Sbjct: 682 ELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGR 741 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + G + TGR S QN+P + Sbjct: 742 VHTSFVQIG-TATGRLSSRNPNLQNIP------------------------IKSTEGRKI 776 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R A+ G +L+ AD IE VLA ++ + + AF DI+ T A FN ID V Sbjct: 777 RQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDV 836 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R I K + G+ + S Sbjct: 837 QPAMRRIAKTINF--------------GIVYGMSAFRLSD-------------------- 862 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + K+ + + + GV + E Sbjct: 863 ----------ELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSL------- 905 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + RR + + ++ R +Q+ Sbjct: 906 -------------------AGRRRYIRTIDSRNTLER---ARAERMA------LNTQIQS 937 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + DI+ M + ++L VHDE++ E P V + + M Sbjct: 938 SAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE- 996 Query: 658 AKGLPLK 664 +PL+ Sbjct: 997 -LSIPLR 1002 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 97/688 (14%), Positives = 189/688 (27%), Gaps = 166/688 (24%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLF 75 A I + D + + + L L D ++ + N + Sbjct: 346 MNASIVGWVFLIDKDS-FYVPVNHDYIDAPKQLNFNDVLNQLKPILEDVSISKIGQNLKY 404 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKAL 131 + + ID+ V + ++ + LN+ GK Sbjct: 405 DAHILSNYK-IDLQGIS-DDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGK 462 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-------- 183 + ++ Y +V T L L Sbjct: 463 KQ---------------VTFNQVNVEIALLYVCENVIITSLLNHMLDEEIAQYPRLVKLY 507 Query: 184 ---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E L + + G +D++++ Q I Q+ + + + +L D + + Sbjct: 508 QNLELPLIKVLLCMERNGVELDVNILSTQQLDITQQMEDIKNQVFELADNVF-NLESPKQ 566 Query: 241 LRMYLFLITGI------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 ++ LF G+ T + L + DLIL+ + L Sbjct: 567 IQRILFESKGLGLIPLRKTPKGVPSTNEEALKLLDHP--VVDLILSYRTLAKLNSTYLEV 624 Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + + RL + + TGR S QN+P Sbjct: 625 LPRKIDLNTHRLHTSYNQ-VVTATGRLSSSNPNLQNIP---------------------- 661 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 C+R I G ++ AD + IE R++ ++ + ++AF N +D++ T Sbjct: 662 --IFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETA 719 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + FN PID+V+ E R K + G+ Sbjct: 720 STMFNIPIDEVTSEYRRRAKAINF--------------GLIYGMS--------------- 750 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + T + + + VL ++ E Sbjct: 751 ---------------AYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAKVQGY 795 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + RRL + L + Sbjct: 796 VETIM--------------------------GRRLYLPQINAKNKMLQQHALRT------ 823 Query: 594 GGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GT 646 +Q S DI+ + M + +++ VHDE+V E + Sbjct: 824 ---AINAPMQGSSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRK 880 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + +LM+ + +PLK + ++ Sbjct: 881 IQALMSNT--YLLDIPLKVDVGIGNSWK 906 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 98/697 (14%), Positives = 189/697 (27%), Gaps = 152/697 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSDL--- 57 S+ D ET S L +A I ++A + + + Sbjct: 369 SEFCFDSETTSLNTL----------EAEIVGLSFAVKSFSAYYVPFPANREEAQAKINAF 418 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNAC-L 114 D+T + N ++ + K GI+I + T V + ++ Sbjct: 419 RSLFEDDTKTLIGQNIKYDFQVLKNY-GIEIK-NKLFDTMVAHFLIMPEMRHNMDILAQT 476 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN+S + GK + + EY D + T +L Sbjct: 477 YLNYSPVSIETLIGKKGKEQTS--------------MRDVEIEKIKEYAAEDADVTFQLK 522 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P + E L + I G +D+ + + + + ++++I Sbjct: 523 TAFAPKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEI 582 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLIL 279 + + LF I D ++ T + +LS IL Sbjct: 583 QDFAGTKF-NVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKIL 641 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++TL E V+ R+ + A TGR S QN+P Sbjct: 642 DYRELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVA-VTGRLSSDNPNLQNIP------- 693 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I + L+ AD + IE R++A I+G+ Sbjct: 694 -----------------IRTERGRQIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKN 736 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+DI+ T AK F V+KE R K + + Y G L Sbjct: 737 MCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQG-----AFGLSENL 791 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + + F+++ +S+ + E L+G L + + Sbjct: 792 NISRTEAKELIDNYFKEYGAIKSYMDRTINFARENGYVKTLLGRKRWL---------RDI 842 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + ++ ++ + Sbjct: 843 TSANATVRSYAERNAINAPIQGSAADMI---------------------KVAMINIYNEL 881 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N T + +V + Sbjct: 882 EKQNFKTK---------------------------MLLQVHDE-----------LVFDVY 903 Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + LM + +P++ + Sbjct: 904 KPELEKVKPIIEKLMREALP--LDVPVEVGLGTGDNW 938 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 121/708 (17%), Positives = 208/708 (29%), Gaps = 155/708 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMP-----S 55 +L D+ET S V A + A +P + Sbjct: 354 RLIFDVETNSLNLFSPVP-------AKVVGIALTHTAGCGWYIPLGHRSGQQLPIAEVVA 406 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-- 113 L D VAHN F+ +G+D+P + T++ A G SLK+ Sbjct: 407 ALQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLSF-DTAIAAALLGKRQSLKDLAFA 464 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + +M + LI K A + Y DV+ T L Sbjct: 465 ELRDADDRPIEMTRIETLIGTGKKQI----------TMDQVAIEQVTPYASADVDMTARL 514 Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +P E L + + G +D +++ +++ Q +++++ Sbjct: 515 LALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVLGQSLREIEQ 574 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS------------EGTLKSILSHSNI 270 I + + + L LF+ + ++ L Sbjct: 575 HIADFVGEPL-NINSRFDLNDLLFIRLKLPTANLKRLAGTTRSGGAVYSVNAETLEDLQT 633 Query: 271 TQL--AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 +IL S ++ L E ++ GR+ + GA TGR S Sbjct: 634 HDQSGIVAMILRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQIGAE-TGRLSSDSPNL 692 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R +A G L+ AD + IE R Sbjct: 693 QNIP------------------------VRSEEGREIRRAFVARPGHVLMTADYSQIELR 728 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA I + ++ F G+DI+ T A+ F+ P+D+VSK QR I K+ + Y Sbjct: 729 VLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYG----- 783 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + L + F + +S+ ++ + L G Sbjct: 784 ISSFGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGRRRYF-- 841 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 +Q+GG RR A + ++ + Sbjct: 842 ----------------------RELQDGGVTGPRRSAFEREATNAGIQGTAADLI----K 875 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 L ++ M L Sbjct: 876 LAMIRLEQALIAGGYQAK----------------------------ML----------LQ 897 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKN-PSWAKGLPLKAEGYEAKRY 673 VHDE+V E P+ +V L MT+ P A +PL+ + Sbjct: 898 VHDELVLEVPEDERDAVAQLVCDTMTQVYPDLA--VPLEVNVETGLNW 943 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 185/664 (27%), Gaps = 136/664 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 A I A +DE + +L DE + + R+ G Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387 Query: 86 IDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLT-KMEEGKALIARFCKGSI 140 D+ + +LA P++ K ++ ++ + L + GK Sbjct: 388 FDLRGVAFD--LLLATYIINPTNVSNEFKKVAMSYDYDDVLYDEEVYGKGAKR------- 438 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + A H K + +L + E L + + G Sbjct: 439 -AIAEESQIARHSIDIATAVLKLKETALEQLKEQDQLTLFEEMEMPLADVLAEMEFNGMA 497 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +DL + ++ + + L+ +I + G+ + L LF + ++ ++ Sbjct: 498 LDLKTLDEMGQDLKGRITALENEIYEHA-GMSFNINSPKQLGEVLFDKLSLPVIKKTKTG 556 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L + I+ + + L +A SDG++ ++T Sbjct: 557 YSTNADVLEKLSDAHPIIKSIMEYRTLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQT 615 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S QN+P +R + G + Sbjct: 616 GRLSSIEPNLQNIP------------------------IRLEEGRLIRKAFVPSEEGWVI 651 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R+LA I+ + I+AF GEDI+ T F ++++ + R K + Sbjct: 652 LGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN 711 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L++ Q E + + Sbjct: 712 FGIIYGMS-----AFGLSENLNITQKEAKKYIDHYLETYSGINQYMEDTVKDAKFHGYAT 766 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 L R + Q L + Sbjct: 767 TLFNR---------RRYIPELSQKNYALRQ------------------------------ 787 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 G+ + +N Q + DI+ + M + Sbjct: 788 -----------------FGERTAMNAPI------------------QGTAADIIKKAMID 812 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L M +PLKA+ Sbjct: 813 VANAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSY 870 Query: 670 AKRY 673 + Sbjct: 871 GPTW 874 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 146/461 (31%), Gaps = 68/461 (14%) Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEE 127 N ++R + + GI++ + T + + + + L + Sbjct: 1 NLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIA 58 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---- 183 GK + A + G Y D + T +L ++ P Sbjct: 59 GKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGP 103 Query: 184 -------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 E L + + G +ID ++ K E I +L++ + G + Sbjct: 104 LNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLS 162 Query: 237 QTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 T L+ LF GI + + T + +L + +IL + Sbjct: 163 STKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYT 222 Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L ++ GR+ + + TGR S QN+P Sbjct: 223 DKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-------------------- 261 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R IA +V AD + IE R++A ++ + + AFA G+DI+ Sbjct: 262 ----VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRA 317 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T A+ F P+D V+ EQR K + L Y L++ + Sbjct: 318 TAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGLSRQLNIPRKEAQKYMDLY 372 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 FE + + + Q E + L G L Sbjct: 373 FERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSN 413 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 100/693 (14%), Positives = 202/693 (29%), Gaps = 155/693 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM--- 53 S + D ET A++A I ++ ++ T + Sbjct: 317 SIIAFDTETTGLD----------AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQ 366 Query: 54 -PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110 ++ + + V + HN ++ + + + + + + T +LA ++ Sbjct: 367 SAKKAIELIFNHFV--IGHNLKYDFKIIQNNFNLTL-PQEYADTMILAWLKNPSLRVNMD 423 Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L L N+ + K + + A+ Y Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFTSVELEKACKYAAEDAYITLRFYLYFLKNL 477 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L + E D + I + G ++D + + L + E K L E+I + Sbjct: 478 ETPLLELAKTC---EFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIY-ILC 533 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF + + T + +L+ IL+ + Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAK 593 Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L + + R+ + G + TGR S QN+P Sbjct: 594 LYSTYCEPLLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------- 641 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 G + +SC +A G + D + IE R+LA + ++ + AFAN Sbjct: 642 -------------GQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFAN 688 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+V T F + + E R++ K + L Y G Sbjct: 689 DEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMG-------------------- 724 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 Y + K+ + + + + + + ++ + Sbjct: 725 ------------------------YKTLSQNLKIEASLAKSYIEKYFENFTSIKKYFEKI 760 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 I S R+ Y + Sbjct: 761 KNEAKQNG--------------------------FITTLSGRKR----------YFDFEN 784 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641 ++ M+ Y + +I+Q + D++ M K ++L +HDE++ E D Sbjct: 785 AKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDKLC 844 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK + Sbjct: 845 ENFVKKTRDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 315 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 99/727 (13%), Positives = 177/727 (24%), Gaps = 201/727 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---------------- 47 + D ET P + + + + Sbjct: 393 VAFDCETDGLHP----------HDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTC 442 Query: 48 --------------------------TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A+ L + DET+ V HN F+ + Sbjct: 443 ARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMH 502 Query: 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 + + + T V A + + K Sbjct: 503 RAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQ------ 556 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDL 187 ++ Y D + T L+ L + E L Sbjct: 557 ------------TFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPL 604 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + + G + D+V +L + ++ + DI L + L+ LF Sbjct: 605 LPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEF-NIGSPKQLQTVLFQ 663 Query: 248 ITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + T S+L + IL S +L++ GR Sbjct: 664 ELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQTGR 723 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + G + TGR S QN+P + Sbjct: 724 VHTSFVQIG-TATGRLSSRNPNLQNIP------------------------IKSTEGRKI 758 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R A+ G +L+ AD IE LA ++ + + AF DI+ T A FN ID V Sbjct: 759 RQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDV 818 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R I K + G+ + S Sbjct: 819 QPAMRRIAKTINF--------------GIVYGMSAFRLSD-------------------- 844 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + K+ + + + GV + E Sbjct: 845 ----------ELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSL------- 887 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + RR + + ++ R +Q+ Sbjct: 888 -------------------AGRRRYIRTIDSRNTLER---ARAERMA------LNTQIQS 919 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + DI+ M + ++L VHDE++ E P V + + M Sbjct: 920 SAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVE- 978 Query: 658 AKGLPLK 664 +PL+ Sbjct: 979 -LSIPLR 984 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 104/691 (15%), Positives = 201/691 (29%), Gaps = 151/691 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL--- 57 S + D ET A +A I ++ + A+PS + Sbjct: 317 SIIAFDTETTGLN----------AREAKIVGFSFCVSENEAFYVPLNHTYLAVPSQISMQ 366 Query: 58 --LQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112 + L + + HN ++ + + + P K++ T +LA ++ + Sbjct: 367 AAKRALGQIYSHFIIGHNLKYDFAIIENNFKLT-PPKKYADTMILAWLYNPSLRVNMDDL 425 Query: 113 CLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L ++ + K + A+ Y Sbjct: 426 ALRLFDYKTLHFESVVKKG------ENFASVELEKACNYAAEDAYITLRFYLYFLKNLEP 479 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L + E + + + + G +++ + L + +E K L E+I L D Sbjct: 480 NL---LKLGFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDDK 536 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + ++ T + +L IL + Sbjct: 537 F-NLNSPKQVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYRELAKLY 595 Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + D R+ + G + TGR S QN+P + + Sbjct: 596 STYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAHGQYAKDY------ 648 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +SC IA +G + D + IE R+LA + ++ ++AF N E Sbjct: 649 ------------------KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDE 690 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F + + E R++ K + L Y G Sbjct: 691 DIHARTAIMIFG----ENNYETRSVAKSINFGLIYGMG---------------------- 724 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 Y + K+ + + + + A + ++ + Sbjct: 725 ----------------------YKTLSQNLKIEASLAKTYIEKYFANFTSIKSFFEKVKN 762 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 I S R+ Y + A ++ Sbjct: 763 DAKING--------------------------FISTLSGRKR----------YFDFANAK 786 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643 M+ Y + +I+Q + DI+ M K ++L +HDE++ E D Sbjct: 787 PMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDELIFEVKDELCEK 846 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + LK AK + Sbjct: 847 FEKRARDIMENIVK--LKVNLKTSSSIAKNW 875 >gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580] Length = 879 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 197/676 (29%), Gaps = 131/676 (19%) Query: 12 SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71 SP L + +A I + ++ ++ DE+ Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIPEETAVQ-SDCFKEWAEDESKKKWVF 374 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEG 128 ++ + + GI++ + + A S + ++ E Sbjct: 375 DAK-RAAVALRWRGIELKGAEF-DVLLAAYIINPGHSYDDVASVAKEHQL-HIVSADEAV 431 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 KG+ + P + A+H+ + + E ++L E L Sbjct: 432 YG------KGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLA 485 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G ++D+D + K+ E ++ + + ++ I + G + L + LF Sbjct: 486 HILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESA-GETFNINSPKQLGVILFDK 544 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 G+ +V ++ T +L + + IL+ + L + + D Sbjct: 545 LGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQIGKLQSTYVEGLLKVIKKDSHK 604 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T ++TGR S QN+P +R Sbjct: 605 VHTRFNQALTQTGRLSSTDPNLQNIP------------------------IRLEEGRKIR 640 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + S G + AD + IE RVLA I+ + I+AF N D++ T F+ ++V Sbjct: 641 QAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEV 700 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + R K + + G+ SQN Sbjct: 701 TPAMRRQAKAVNFGIV--------------YGISDYGLSQN------------------- 727 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + QGV + ++ + +S RR Sbjct: 728 -----------LGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYI 776 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + +NT +Q Sbjct: 777 PELTSRNFNL-----------------RSFAERTAMNT------------------PIQG 801 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + DI+ + M + ++L VHDE++ E P+ + L +M Sbjct: 802 SAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE- 860 Query: 658 AKGLPLKAEGYEAKRY 673 +PLK + + Sbjct: 861 -LDVPLKVDCASGPSW 875 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 185/664 (27%), Gaps = 136/664 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 A I A +DE + +L DE + + R+ G Sbjct: 331 HHANILGIAV-VNDEESYYVPFELAKQ-SEAFMTFLADEKIAKDIFDLKRSRVALMWQ-G 387 Query: 86 IDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLT-KMEEGKALIARFCKGSI 140 D+ + +LA P++ K ++ ++ + L + GK Sbjct: 388 FDLRGVAFD--LLLATYIINPTNVSNEFKKVAMSYDYDDVLYDEEVYGKGAKR------- 438 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + A H K + +L + E L + + G Sbjct: 439 -AIAEESQIARHSIDIATAVLKLKETALEQLKEQDQLTLYEEMEMPLADVLAEMEFNGMA 497 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +DL + ++ + + L+ +I + G+ + L LF + ++ ++ Sbjct: 498 LDLKTLDEMGQDLKGRITALENEIYEHA-GMSFNINSPKQLGEVLFDKLSLPVIKKTKTG 556 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L + I+ + + L +A SDG++ ++T Sbjct: 557 YSTNADVLEKLSDAHPIIKSIMEYRTLTKLYSTYIEGLKKACYSDGKVHTIFNQA-LTQT 615 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S QN+P +R + G + Sbjct: 616 GRLSSIEPNLQNIP------------------------IRLEEGRLIRKAFVPSEEGWVI 651 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R+LA I+ + I+AF GEDI+ T F ++++ + R K + Sbjct: 652 LGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAIN 711 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L++ Q + + + Sbjct: 712 FGIIYGMS-----AFGLSENLNITQKEAKKYIDHYLKTYSGINQYMEDTVKDAKFHGYAT 766 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 L R + Q L + Sbjct: 767 TLFNR---------RRYIPELSQKNYALRQ------------------------------ 787 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 G+ + +N Q + DI+ + M + Sbjct: 788 -----------------FGERTAMNAPI------------------QGTAADIIKKAMID 812 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L M +PLKA+ Sbjct: 813 VANAMKEKQVKSRLLLQVHDELIFEVPQEELDLMIELVTKTMEDVVK--LQVPLKADYSY 870 Query: 670 AKRY 673 + Sbjct: 871 GPTW 874 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 101/657 (15%), Positives = 194/657 (29%), Gaps = 131/657 (19%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPS 90 L ++ +E + + + ++ ++ +S R + + GI++ Sbjct: 336 LLGFSIVNETGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSK--RAVVALRWQGIELKG 393 Query: 91 KRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + T + A +S + ++ E KG+ + P + Sbjct: 394 AEF-DTLLAAYIINPGNSYDDVASVAKDYGL-HIVSSDESVYG------KGAKRAVPSED 445 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + H+ L + + + E +L + E L L+ + G ++D+D + Sbjct: 446 VLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLK 505 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ E + + K+ +E I ++ + L + LF G+ +V ++ T + Sbjct: 506 RMGEELGAKLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADV 564 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL + L + D T ++TGR S Sbjct: 565 LEKLADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQTGRLSSTD 624 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383 QN+P +R + S + AD + Sbjct: 625 PNLQNIP------------------------IRLEEGRKIRQAFVPSEKDWLIFAADYSQ 660 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA I+ + I+AF N DI+ T F+ D+V+ R K + Sbjct: 661 IELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNF------ 714 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ SQN + Sbjct: 715 --------GIVYGISDYGLSQN------------------------------LGITRKEA 736 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + QGV +D + + R +P L R Sbjct: 737 GAFIDQYLESFQGVKAYMEDSVQDAKQKGYV--TTLMHRRRYIPELTSRNFN-------- 786 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 + + +NT +Q + DI+ + M + Sbjct: 787 -------IRSFAERTAMNT------------------PIQGSAADIIKKAMIDMAAKLKE 821 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + L +M A +PLK + + Sbjct: 822 KQLKARLLLQVHDELIFEAPQEEIEILEKLVPEVMEHA--LALDVPLKVDFASGPSW 876 >gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2] gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2] Length = 879 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 197/676 (29%), Gaps = 131/676 (19%) Query: 12 SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71 SP L + +A I + ++ ++ DE+ Sbjct: 317 SPASLVVEQLGDNYHEAPILGFSI-VNEHGAFFIPEETAVQ-SDCFKEWAEDESKKKWVF 374 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEG 128 ++ + + GI++ + + A S + ++ E Sbjct: 375 DAK-RAAVALRWRGIELKGAEF-DVLLAAYIINPGHSYDDVASVAKEHQL-HIVSADEAV 431 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 KG+ + P + A+H+ + + E ++L E L Sbjct: 432 YG------KGAKQAVPDEKELADHLARKAKAISLLREKLLDELEENEQLELFEALEMPLA 485 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G ++D+D + K+ E ++ + + ++ I + G + L + LF Sbjct: 486 HILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESA-GETFNINSPKQLGVILFEK 544 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 G+ +V ++ T +L + + IL+ + L + + D Sbjct: 545 LGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYRQIGKLQSTYVEGLLKVIKKDSHK 604 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T ++TGR S QN+P +R Sbjct: 605 VHTRFNQALTQTGRLSSTDPNLQNIP------------------------IRLEEGRKIR 640 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + S G + AD + IE RVLA I+ + I+AF N D++ T F+ ++V Sbjct: 641 QAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEV 700 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + R K + + G+ SQN Sbjct: 701 TPAMRRQAKAVNFGIV--------------YGISDYGLSQN------------------- 727 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + QGV + ++ + +S RR Sbjct: 728 -----------LGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYI 776 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + +NT +Q Sbjct: 777 PELTSRNFNL-----------------RSFAERTAMNT------------------PIQG 801 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + DI+ + M + ++L VHDE++ E P+ + L +M Sbjct: 802 SAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKVLEKLVPEVMEHALE- 860 Query: 658 AKGLPLKAEGYEAKRY 673 +PLK + + Sbjct: 861 -LDVPLKVDCASGPSW 875 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 101/640 (15%), Positives = 186/640 (29%), Gaps = 141/640 (22%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 L ++ + V+HN +FKK +GI+ S ++ T + A Sbjct: 367 IYEENNEDTLKCLKDIFENDKIEKVSHNIKVPYTVFKK-MGINFTSVKF-DTEIAAYLID 424 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + I + K + + + +F K Sbjct: 425 SSRG------EYGLNSI----------IQDYLKIMLQGEEDEIRVKENSLLKDVFETLNK 468 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + E E L + E+ L L+ + G+++D + +L E E KL +DI Sbjct: 469 QIKELNME-----ELLYEVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDI 523 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 L + + L LF + ++ ++ T +L + I Sbjct: 524 YGLAEEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYY 582 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L + DG++ + + TGR S QN+P Sbjct: 583 RQFTKLYSTYIEGLKAVIDKDGKIHSSFNQTV-TTTGRLSSTEPNLQNIP---------- 631 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + ++ AD + IE RVLA IA ++ I Sbjct: 632 --------------IKYEMGREIRKVFVPEDENSIILSADYSQIELRVLAHIADDENLID 677 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF N DI+ T ++ F PID+V+K QR+ K + + Y G + L + Sbjct: 678 AFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIG-----DFSLAKDLKIS 732 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + FE + + + + Q + ++ R + Sbjct: 733 RKEAKNYIDTYFERYPGVKRYMDNVIKQAEDNLYVTTIMNR---------RRFIPEIKNS 783 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 K + G+ + Sbjct: 784 KKMV-----------------------------------------------KAFGERLAM 796 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634 NT +Q + DI+ M N ++L VHDE++ Sbjct: 797 NTP------------------IQGSAADIIKMSMVNVYNILKSKNLKSKVILQVHDELIL 838 Query: 635 ETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V L M +PL+ + + Sbjct: 839 NVYKDELEEVKELVKNQMEDVMK--LRVPLEVDINLGDNW 876 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 107/676 (15%), Positives = 188/676 (27%), Gaps = 147/676 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFE 76 A + A D + L +L D+ + V H+ Sbjct: 338 AELIGVALGLDSGNAGYIPLEPGAAEKSASSLSEEQVFPVLFPFLADKKIALVGHDLKTV 397 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALI 132 I+ + G+ + + T V A L+ K L Sbjct: 398 LIVLSQ-KGVKVQ-NPLLDTMVAAYILNPARRGYELSEIVQDYLHRQVEP----LRKKL- 450 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------- 183 ++ + ++ R VEA EL LI + Sbjct: 451 ---------VGGSSPKQSPASFPPERLRDFACRRVEAIGELASTLIEKMEETGLRELFDS 501 Query: 184 -ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + ++G +DL L+ ++ + + L E + G + L+ Sbjct: 502 VEMPLVAVLAAMEEKGVLLDLHLLKEMSQELG-HLLSLSEAKIYALAGERFNIASPKQLQ 560 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ T +LS+ + IL + + ++ L + Sbjct: 561 TILFEKLNLPKGKKTKGGYSTDVEVLSNLALNHELPAEILAYRSMAKLKSTYIDALPSLI 620 Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + A TGR S QN+P Sbjct: 621 NIRTGRIHTSYNQTVA-ATGRLSSSNPNLQNIP------------------------IRT 655 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 L +R IA G +V AD + IE RVLA ++ + I AFA GEDI+ T A F Sbjct: 656 LEGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFG 715 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + ++ E R KV+ + Y L + Q F+ +E Sbjct: 716 VFPEMINAEMRRQAKVINFGVLYGMS-----AFGLSRELGIPQKQAQAYIDGYFKKYESV 770 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 +++ + Q E L+ R + + + + + Sbjct: 771 KTYLDGILQQARERGYVTTLLNR---------RRYLPEINSVNPAVRQLAERMAINAPIQ 821 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 I + R KG Sbjct: 822 GTAADL---------------IKMAMLRIADLIREKG----------------------- 843 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657 + M + VHDE+V E P ++ L M Sbjct: 844 -----------MKSAMT----------MQVHDELVFEVPQEEKIALMNLVRQEMEGVVE- 881 Query: 658 AKGLPLKAEGYEAKRY 673 +PLK + + + Sbjct: 882 -LKVPLKVDIASGRNW 896 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 108/719 (15%), Positives = 199/719 (27%), Gaps = 180/719 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-----MPSD 56 + +D ET S A +A + + A P Sbjct: 357 RLVAVDTETSSLD----------AMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQ 406 Query: 57 LL---------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + L D++V+ V N ++ + + + I T V++ Sbjct: 407 VAMEDALAALKLLLEDDSVLKVFQNGKYDLNVLAR---VGIDVSPIEDTMVMSFDLDAGR 463 Query: 108 S--------LKNACLA-LNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L K GK I Sbjct: 464 GEGMGGGHGMDELSERHLLHKPLAFKDVCGTGKKAIPFGEVP-----------------L 506 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLV 206 EY D + T L++ L P E R L + + G ++D + Sbjct: 507 DRATEYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARL 566 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--------VDMSE 258 KL E A L+++I ++ G + L LF G + Sbjct: 567 AKLSEEFATTTASLEKEIHEIA-GQQFAVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQ 625 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 L+++ +A ++ R S + L ++ GR+ + GA +T Sbjct: 626 SVLENLAKDEAAKPIADKVLEWR-HLSKLKSTYTDALQAQINPETGRVHTSYSLVGA-QT 683 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R + +G L+ Sbjct: 684 GRLSSTDPNLQNIP------------------------IRTEIGRTIREAFVPEDGNVLL 719 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+ A +A D +AFANGEDI+ T + F +V+++ RA K + Sbjct: 720 AADYSQIELRLAAHMADVDTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINF 775 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 A+ Y L+++ + F+ + + + + + E + Sbjct: 776 AILYG-----ISRWGLAGRLEVEPDEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSET 830 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 L G + + +G KR Sbjct: 831 LFGRK---------TWFPRITSKNQAERQGSERAAINAPIQGT---------SADIIKRA 872 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + +LP+ R +V+ + Sbjct: 873 MARMLPALRDEGLGNVRM--------------------------------------LLQV 894 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN--PSWAKGLPLKAEGYEAKRY 673 E+V E PD + +M + P+ + +PL + + + Sbjct: 895 HD-----------ELVFELPDGDVEKASPIIERVMAEAALPAVSLDVPLAVDIGTGQSW 942 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 98/674 (14%), Positives = 185/674 (27%), Gaps = 163/674 (24%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-------FE 76 +AE A I ++ E + +M +LL+ L H + F+ Sbjct: 344 FAENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALV--------HVAKHAGRFVVFD 394 Query: 77 RIL-FKKTLGID-IPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKA 130 G++ ++ + V A ++ L E Sbjct: 395 LKSSLPYLKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLMIDPKTELE--K 452 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 ++ + S + + W+LF ++ E L Sbjct: 453 MVCYEAYAAFASSEVLEEKLKKEEMWKLF---------------------TEIEMPLVFT 491 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G R++ + + E + + +L+++I +L + L + LF Sbjct: 492 LFHMEQNGVRVEAEELKSYGEQLGGKIVQLEKEIYELAGEEF-NINSPKQLGVVLFEHLS 550 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLR 306 + ++ T +L IL + + L+ + D R+ Sbjct: 551 LPNGKKTKTGYSTAADVLDKLAPDYPIVAKILEYRQLAKLKSTYADGLAVFIHEDDHRIH 610 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G + TGR S QN+P +R Sbjct: 611 GKFNQTV-TATGRISSTEPNLQNIP------------------------ARVELGRLIRK 645 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G V AD + IE RVLA +G+ I+A+ +DI+ T ++ F+TP D+V+ Sbjct: 646 VFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTD 705 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 QR K + + Y + L + + FE + + Sbjct: 706 LQRRNAKAVNFGIVYG-----ISSFGLSQDLSITRKEAAEYIDRYFETYPGIKKFLDDAV 760 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 E L G + + + Sbjct: 761 AHAKEQGYVVTLFGRRRPV---------PELSSSNFMQRQ-------------------- 791 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 G+ +N+ Q + Sbjct: 792 ---------------------------FGERVAMNSPI------------------QGTA 806 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK 659 DI+ M K +VL VHDE++ ET V + M Sbjct: 807 ADIMKIAMIAVDKELRMRNMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAAD--L 864 Query: 660 GLPLKAEGYEAKRY 673 +PL+ + + K + Sbjct: 865 SVPLEIDMHSGKNW 878 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 106/690 (15%), Positives = 181/690 (26%), Gaps = 158/690 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 Q ++ A A + + L L Sbjct: 433 MQTELSGIALALAPNHACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRG 492 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121 + + N F +L + GI + + +++ L + L + Sbjct: 493 HLKIGLNVKFSAVLLAQH-GIVMQNH--DDIELISYALDAGRGSHDLASLAKRWLGHATV 549 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 G A A Y + T L++ L P Sbjct: 550 SHGELTGSGRNRL---------------AFDQVAIDRATAYAAEYADMTLRLWQVLKPRL 594 Query: 182 DGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ER + + RG ID ++ +L AQ +L+ +I +L Sbjct: 595 VAERMNTVYETLERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEP 654 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSG 286 I + + +F G+ ++ T IL IL+ S Sbjct: 655 I-NVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDELAEQGHDFPRKILDWRQVSK 713 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E V R T A+ TGR S QN+P Sbjct: 714 LKSTYTDALPEYVHPQTRRVHTTYALAATTTGRLSSNEPNLQNIP--------------- 758 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA+ G KLV AD + IE R+LA IA +AF +G Sbjct: 759 ---------VRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGL 809 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T ++ F P+ + E R K + + Y L + + Sbjct: 810 DIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAAA 864 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 FE + ++ ++ E L G C + + Sbjct: 865 YIKKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCH---------YPDIKSPNPSHRA 915 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + R + + + N Sbjct: 916 FNERAAINARLQGSAADII---------------------RRAMARMDDALAARNL---- 950 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVG 645 +R M L VHDE++ E PD ++ Sbjct: 951 ------------------SAR------ML----------LQVHDELIFEVPDDEVAATLP 976 Query: 646 TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL+ + A + Sbjct: 977 VVQHVMQDAPFPAVLLSVPLQVDARAADNW 1006 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 105/667 (15%), Positives = 190/667 (28%), Gaps = 139/667 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I CA D + P L++ LRD + + + + + GID Sbjct: 330 ADIRGCALGRFDGSAAFVQGEARDW-PQPLVECLRDGSKLKAVQDLKPLLLALHRQ-GID 387 Query: 88 IPSKRWICTSVLARTNGLPS--------SLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 +P + T V ++ L E + K + F Sbjct: 388 MPG-PYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGER---EDTSKGPQSLFDVDE 443 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 A + + E K L D E L + I G+ Sbjct: 444 ALVRRTGEAAAVTAKVAPMLRERLKE--------QGSLSLFQDVEMPLVPVLAEIERNGF 495 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDM 256 +D+ + L + + E +++ I +L G + L LF G+ Sbjct: 496 LLDVAGLQALSKELEHELEQMVGSIYRLGGGEF-NIGSPKQLATVLFETLGLKPLRKTKT 554 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315 T + L+ ILN + ++ L + V+ RL +L A Sbjct: 555 GYSTDEDTLTQLASQHELPAQILNYRTLTKLKSTYVDALPQLVNPETKRLHTSLNQTVA- 613 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P G +R IA G + Sbjct: 614 ATGRLSSTDPNLQNIP------------------------VKGDYGLRIREAFIAPPGHQ 649 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + +E R+LA ++ + ++ F GEDI++ T + FN P +V+++ R K + Sbjct: 650 LLCADYSQVEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSV 709 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y + + Q Sbjct: 710 VFGIVYGISP-----FGLASNIGVPQAD-------------------------------- 732 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + K V L + + Sbjct: 733 -------AKKYIETFFEKFAAVRALMDRNIDDGKTKGYTTTIL----------------- 768 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR +++G ++ + +Q + D++ M Sbjct: 769 ---------GRRRPIPELQGGDPSQRGVGERM---------AVNSPIQGSAADLIKVAMI 810 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN-PSWAKGLPLKAEG 667 + ++L VHDE++ E P+ L M + +PLK + Sbjct: 811 KVHQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEMEATGAALGLSVPLKVDL 870 Query: 668 YEAKRYR 674 +R Sbjct: 871 GVGLNWR 877 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 100/678 (14%), Positives = 190/678 (28%), Gaps = 133/678 (19%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 S L G + + ++ D+ + S +L D V Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNNNGH-YFIDKDTALS-SSKFKAWLEDGRVKKTV 369 Query: 71 HNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS--EHLTKMEE 127 N R + K G +I + + + + + E Sbjct: 370 FNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSDEA 426 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 KG+ S A HV Y K +E ++ E L Sbjct: 427 VYG------KGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPL 480 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 ++ + +G +ID + ++ E + ++ +K++ I + + L + LF Sbjct: 481 AIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF-NINSPKQLGVVLFE 539 Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DG 303 + ++ ++ T +L T IL + L + + DG Sbjct: 540 KMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQSTYIEGLKKVIHESDG 599 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 ++ ++TGR S QN+P Sbjct: 600 KVHTRFNQT-LTQTGRLSSVDPNLQNIP------------------------IRLEEGKK 634 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA ++ I AF + DI+ T F+ + Sbjct: 635 IRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + G+ SQ+ Sbjct: 695 EVTANMRRQAKAVNF--------------GIVYGISDYGLSQS----------------- 723 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + A + + GV + + + R Sbjct: 724 -------------LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYV--TTLLHR 768 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 +P + R + + +NT + Sbjct: 769 RRYLPEITSRNFNL---------------RSFAERTAMNT------------------PI 795 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + DI+ + M K ++L VHDE++ E P+ + + +M Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 +PLK + K + Sbjct: 856 E--LEVPLKVDYSYGKTW 871 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 87/686 (12%), Positives = 200/686 (29%), Gaps = 156/686 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-----EQSAMPSDLLQYL 61 D E + +++ I + E + D + + DL ++ Sbjct: 319 DTEIYMSYSIGNGELYSKI---YIDTIFMKVE-EKTYIVDLKKIIEQNREDVLKDLKEFF 374 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118 ++ + + H+S + K GI I + + T++ +LK+A + Sbjct: 375 ENKKIAKIIHDSKNMYTVLMKN-GIKIENLAF-DTAIAEYLINPSKKEYNLKDAAEEMLL 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + + K + + EL+ ++ Sbjct: 433 LDLTGEDNDIKIKEVYVMDKIYNKLKDKIKEYD------------------MDELYYKV- 473 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E L + ++ G++++ + + ++ + E K+ ++I + + Sbjct: 474 -----ELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEIYNMAGEEF-NISSP 527 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L + ++ + + L Sbjct: 528 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYYRQLTKLYSTYVEGL 587 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + D ++ + + TGR S QN+P Sbjct: 588 KPVIDVDEKIHSSFNQTV-TTTGRLSSTEPNLQNIP------------------------ 622 Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + + ++ AD + IE RVLA IA ++ I AF + DI+ T + Sbjct: 623 IKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHSDIHTKTAS 682 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + F PI++V+ R+ K + + Y + + + + + FE Sbjct: 683 EVFRVPIEEVTSRMRSNAKAVNFGIVYG-----ISDFSLAQDIKVSKKEAKEYIDTYFER 737 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + + + + ++ R + K + Sbjct: 738 YPNVKKYLEDIVVTAKKNMYVNTIMNR---------RRIIPEIASSNKIV---------- 778 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 G+ +NT Sbjct: 779 -------------------------------------KGFGERLAMNTP----------- 790 Query: 595 GKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M N K ++L VHDE++ V L Sbjct: 791 -------IQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELV 843 Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRY 673 L M + +PL+ + + Sbjct: 844 KLEMEEVME--LKVPLEVDIESGNTW 867 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 101/670 (15%), Positives = 196/670 (29%), Gaps = 140/670 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---SDLLQYLRDETVMCVAHNSLFERI 78 Y E+ I + ++ + + + DE++ +S R Sbjct: 328 DNYHEEP-ILGFSI-VNETGLYYIP----KEIAIQSETFKSWAEDESMKKWVFDSK--RS 379 Query: 79 LFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIAR 134 + + GI++ + + A +S + + ++K E Sbjct: 380 VVALRWQGIELKGTEF-DALLAAYIINPGNSYDDVASVAKEYGLN-IVSKDEAVYG---- 433 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 KG+ + P + A+H+ + + E +L D E L L+ + Sbjct: 434 --KGAKRAVPAEKELADHLARKASAVNSLRDKLLHALEENNQLELYEDLELPLALILGEM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G ++D++ + ++ E + + K+ +E I + + L + LF G+ V Sbjct: 492 ESMGVKVDVERLKRMGEELKAKLKEYEEKIHDIAGEPF-NINSPKQLGVILFEKLGLPPV 550 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T +L IL + L + D T Sbjct: 551 KKTKTGYSTSADVLEKLADKHDIVAHILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFN 610 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370 ++TGR S QN+P +R + Sbjct: 611 QALTQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPS 646 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + AD + IE RVLA I+ ++ I+AF N DI+ T F+ D+V++ R Sbjct: 647 EPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRR 706 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + G+ SQN Sbjct: 707 QAKAVNFGIV--------------YGISDYGLSQN------------------------- 727 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + GV ++ + + +R +P L Sbjct: 728 -----LGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYV--TTLMQRRRYIPELT 780 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 R + + +NT +Q + DI+ Sbjct: 781 SRNFNL---------------RSFAERTAMNT------------------PIQGSAADII 807 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 + M + ++L VHDE++ E P + L +M A +PL Sbjct: 808 KKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA--LALDVPL 865 Query: 664 KAEGYEAKRY 673 KA+ + Sbjct: 866 KADYASGPSW 875 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 104/694 (14%), Positives = 202/694 (29%), Gaps = 150/694 (21%) Query: 8 IET--RSPQPLPKVGVWAYAE-------QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ET L Y E A I + A + V E + Sbjct: 302 FETAENILDDLFADETAFYVEMLEENYHTAEIAGFSAASGNG-VYFIP-AELALSSETFK 359 Query: 59 QYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---A 112 ++ DE+ + ++ + + GI + + + + S+++ Sbjct: 360 KWAEDESKKKIV----YDAKRTEVSLRHHGIHLKGVEF-DLLIASYIINPSESIEDFASV 414 Query: 113 CLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 ++ T GK + P A H+ E + +E Sbjct: 415 AKRHGYNGVQTDDAVYGKGAKRK--------IPAQEELAGHLARKAAALEALRDKLEDEL 466 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + ++ D E L L+ + +G ++DL+ + + E I Q+ ++E I +L G Sbjct: 467 KENRQYELFYDLEMPLSLILADMESQGVKVDLERLQAMGEQINQKLGDIEERIHELA-GE 525 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L + LF G+ V ++ T +L IL Sbjct: 526 AFNINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLEDKHEIIREILQYRQLGKLQ 585 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + G++ ++TGR S QN+P Sbjct: 586 STYIEGLLKVTDKKTGKVHTRFNQA-LTQTGRLSSTDPNLQNIP---------------- 628 Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + S G + AD + IE RVLA IAG++ I+AF + Sbjct: 629 --------IRLEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKLIEAFREDQ 680 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T + F+ +V+ R K + G+ SQ+ Sbjct: 681 DVHTKTAMEVFHVSEGEVTSNMRRHAKAVNF--------------GIVYGISDYGLSQS- 725 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + GV + D+ + Sbjct: 726 -----------------------------LGITRKEAGQFIDRYLESYPGVREYMDDIIQ 756 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 S R +P + R + + +NT Sbjct: 757 EAKQKGYV--STLLHRRRYLPEITSRNFNL---------------RSFAERTAMNT---- 795 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 +Q + D++ + M + ++L+VHDE++ E P+ Sbjct: 796 --------------PIQGSAADVIKKAMIDMADRLREEGLQSRLLLSVHDELIFEAPEEE 841 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +M +PLK + + Sbjct: 842 IEILKRIVPDVMENTVD--LDVPLKVDFSYGPTW 873 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 101/681 (14%), Positives = 186/681 (27%), Gaps = 151/681 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDL-LQY 60 + D ET + A I +++++DE P + L++ Sbjct: 317 IVAFDTETTGVDS----------KSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQIDLKF 366 Query: 61 LRDE--TVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC 113 + + N ++ + K LG++ P + T +LA + SS + Sbjct: 367 ATWAVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNSSVGMDALA 425 Query: 114 LAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L ++ + K D P + + AW Y Sbjct: 426 KRLYDYDTIKFEDVVKKGQ------TFGDVPLENAAKYAAEDAWITLKFYKTFQNTLDPN 479 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L L E L + G +I+ + KL + K L +I +L+ G Sbjct: 480 L---LALADMHEFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIYELS-GEN 535 Query: 233 RSSRQTYALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF + T +S+L+ IL Sbjct: 536 FNINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAYRELYKLQS 595 Query: 290 LKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L D R+ + G + TGR S QN+P Sbjct: 596 TYCEPLLALAKKDEGSRIYTSFLQTG-TSTGRLSSKNPNLQNIP---------------- 638 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G + VR C A G V D + IE R+LA + + ++AF N ED Sbjct: 639 --------ARGSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDED 690 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T F + RA+ K + L Y G+ Sbjct: 691 IHARTAISIFG----SSDGQNRAVAKSINFGLIYGMGSSKLAN----------------- 729 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + + + + Sbjct: 730 ---------------------------QVNITRAEAKEYIERYFKAFATIKEFLESIKIS 762 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + R+ Y + ++ Sbjct: 763 AKNEG--------------------------FVQTLLGRKR----------YFDFKSATP 786 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDTPYFSV 644 M+ + + + Q + D++ M ++L +HDE++ E D Sbjct: 787 MQMAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKNASMLLQIHDELIFEVKDEFAQEF 846 Query: 645 -GTLCSLMTKNPSWAKGLPLK 664 M + + +PLK Sbjct: 847 GRATQKTMEEI--YTLNVPLK 865 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 103/673 (15%), Positives = 192/673 (28%), Gaps = 140/673 (20%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLFE 76 GV +++ + A + + + L + D T++C + Sbjct: 256 GVALLSDKEGVYGLGIALTKGEIYYVPVEGLLTGDYICAALKEI-ADSTILC-----SID 309 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHL-TKMEEGKA- 130 K +G++ + T V + + L+ + GK Sbjct: 310 VKSMLKHVGLE-DADHVFDTGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDS 368 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 L A + K S Y C A A+ E R + E L Sbjct: 369 LKAAWEKSSDGLMSYACHLAYT--AYATREPIENALKETEMWNVYR-----EIELPLIFT 421 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 ++ G R+ + + E + +L++ I + + L + LF G Sbjct: 422 LDSMEKWGIRVKGEELKSYGEKLQVRIAELEKLIYEQAGEEF-NINSPKQLGVILFEKMG 480 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 I ++ T IL Q + IL + + LS + +DGR+ Sbjct: 481 IPGGRKTKTGYSTAADILEKLAPEQPIVNDILEYRQLTKLKSTYADGLSAVIEADGRIHS 540 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + TGR S QN+P +R Sbjct: 541 TFNQT-ITATGRISSTEPNLQNIP------------------------VRMELGRLIRKV 575 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + +G + AD + IE RVLA ++G++ I+A+ EDI+ T ++ F+ P D+V+ Sbjct: 576 FVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTDL 635 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + + Y + L + + FE + + + + Sbjct: 636 QRRNAKAVNFGIVYG-----ISSFGLSQDLSITRKEAAEYIEKYFETYPKIKGFLDGLVA 690 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 E ++G + + Sbjct: 691 DGKEKGYVSTMLGRRRPI---------PELKSGNFMQRS--------------------- 720 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 G+ +N+ Q + Sbjct: 721 --------------------------FGERVAMNSPI------------------QGTAA 736 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKG 660 DI+ M + +VL VHDE++ ET +V + M Sbjct: 737 DIIKIAMNRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGAVH--LS 794 Query: 661 LPLKAEGYEAKRY 673 + L + +E + Sbjct: 795 VELDVDMHEGNSW 807 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 97/667 (14%), Positives = 188/667 (28%), Gaps = 134/667 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 Y E+ I + ++ + + + DE+ +S R + Sbjct: 328 DNYHEEP-ILGFSI-VNETGLYYIPKETAIQ-SEAFKSWAEDESKKKWVFDSK--RSVVA 382 Query: 82 -KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCK 137 + GI++ + + A +S + + ++K E A+ Sbjct: 383 LRWQGIELKGTEF-DALLAAYIINPGNSYDDVASVAKEYGLN-IVSKDEAVYGKGAKHAV 440 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + R EL++ L E L L+ + Sbjct: 441 PAEKELADHLARKAAAVNSLRDKLLHALKENNQLELYEDL------ELPLALILGEMESM 494 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D++ + ++ E + + K+ +E I + + L + LF G+ +V + Sbjct: 495 GVKVDVERLKRMGEELRAKLKEYEEKIHDIAGEPF-NINSPKQLGVILFDKLGLPVVKKT 553 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L IL + L + D T Sbjct: 554 KTGYSTSADVLEKLADKHDIVAYILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFNQAL 613 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNG 373 ++TGR S QN+P +R + Sbjct: 614 TQTGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEPD 649 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE RVLA I+ ++ I+AF N DI+ T F+ D+V++ R K Sbjct: 650 WLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQAK 709 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + + G+ SQN Sbjct: 710 AVNFGIV--------------YGISDYGLSQN---------------------------- 727 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GV ++ + + +R +P L R Sbjct: 728 --LGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYV--TTLMQRRRYIPELTSRN 783 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + + +NT +Q + DI+ + Sbjct: 784 FNL---------------RSFAERTAMNT------------------PIQGSAADIIKKA 810 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + ++L VHDE++ E P + L +M +PLKA+ Sbjct: 811 MIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILEKLVPEVMEHALD--LDVPLKAD 868 Query: 667 GYEAKRY 673 + Sbjct: 869 YASGPSW 875 >gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10] gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10] Length = 886 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 99/685 (14%), Positives = 185/685 (27%), Gaps = 151/685 (22%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVM 67 ET P A + A A + E +S + +L D + Sbjct: 329 ETHGDNP----------HHADVIGLALATE-ERQYFLPFDVLKSEEAEPVRAWLADSEIP 377 Query: 68 CVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSE- 120 ++ GI + + A S L + Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAAF-DVHLAAYLLDPTESNQTLSGLASKYGLAYL 432 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + GK + P + H+ L E + L Sbjct: 433 QADEDVFGKG--------AKYKVPDVEKLSEHMARKCLAVSELVPIQEKELAANEMLPLF 484 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + + +G ++ + + +L + KL ++I ++ + Sbjct: 485 HDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEF-NLNSPKQ 543 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L LF+ + ++ ++ T +L LIL + + L + Sbjct: 544 LGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLLK 603 Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +SS G++ + A TGR S QN+P Sbjct: 604 EISSVTGKVHTYYRQTIA-ATGRLSSQYPNLQNIP------------------------I 638 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G ++ AD + IE RVLA I+ ++ +AF + DI+ T Sbjct: 639 RLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMD 698 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F +D+V R K + + Y L+ Sbjct: 699 VFGVGMDEVDSNMRRSAKAVNFGIVYG-----ISDYGLSQNLN----------------- 736 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + QGV + + + Sbjct: 737 ----------------------ITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVK 774 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR ++ L + R Sbjct: 775 TLLE--------------------------RRRYLPEINASNFNLRSFA---ERTAM--- 802 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ M + K ++L VHDE+V E P+ + L Sbjct: 803 ---NTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVP 859 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M++ +PLK+E + + Sbjct: 860 DVMSQALK--LSVPLKSEVSYGENW 882 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 102/654 (15%), Positives = 177/654 (27%), Gaps = 150/654 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAM--PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A D P L E A+ P++LL D V H+ + GI+ P Sbjct: 346 VGLAMGDPPAWL----EGEALADPAELL----DSGARLVGHDLKPLYNWL-YSQGIE-PP 395 Query: 91 KRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 T++ A S L + C E Sbjct: 396 APAFDTALAAYLLDPSRSSYDLADLCRQHGLGELP------------------------- 430 Query: 148 TRANHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + W R +EA + E L + + G ID Sbjct: 431 -PGDTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAEMEAVGVGIDPA 489 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----T 260 + ++ + + ++ ++I +L G+ + L LF G+ ++ T Sbjct: 490 ALHEMSVELERRILQVSQEIYELA-GMQFNISSPKQLGDVLFGKLGLPSGKKTKSGGYST 548 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L +L+ + ++ L + ++ DGR+ T A TGR Sbjct: 549 DAEVLEELAAAYPIAARVLDYRTLTKLKGTYVDALGQLIARDGRIHTTFAQTVAE-TGRL 607 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R +A G L+ AD Sbjct: 608 SSKDPNLQNIP------------------------IRIEEGRRIRKAFVARPGCVLLSAD 643 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RV+A +G+ +AF + +DI+ T A+ F P+D+V+ E R K + L Sbjct: 644 YSQIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLI 703 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + + + + F + + + + E L G Sbjct: 704 YGQT-----DFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDG 758 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 L + + + + Sbjct: 759 RRRPL---------PEINHRVFTIRQNAERMAINTPIQGTAADL---------------- 793 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 + V+ +R M Sbjct: 794 -----MKRAMIAVRRAMREEGL----------------------SAR------MI----- 815 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E P + L M +PLK E + Sbjct: 816 -----LQVHDELVFECPVGEVDRLARLVRREMEGAMK--LDVPLKVEVKVGPDW 862 >gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551] gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551] Length = 875 Score = 310 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 99/678 (14%), Positives = 188/678 (27%), Gaps = 133/678 (19%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 S L G + + + D+ + S +L D V Sbjct: 312 TSEAALIVEGYEENYHHNQLLGFGISNKNGH-YFIDKDTALS-SSKFKAWLEDGRVKKTV 369 Query: 71 HNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS--EHLTKMEE 127 N R + K G +I + + + + + E Sbjct: 370 FNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLATIAKLKGYHQVQSDEA 426 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 KG+ S A HV Y K +E ++ E L Sbjct: 427 VYG------KGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVENEQFELFEKLEMPL 480 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 ++ + +G +ID + ++ E + ++ +K++ I + + L + LF Sbjct: 481 AIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF-NINSPKQLGVVLFE 539 Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DG 303 + ++ ++ T +L T IL + L + + DG Sbjct: 540 KMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQSTYIEGLKKVIHESDG 599 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 ++ ++TGR S QN+P Sbjct: 600 KVHTRFNQT-LTQTGRLSSVDPNLQNIP------------------------IRLEEGKK 634 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S + AD + IE RVLA IA ++ I AF + DI+ T F+ + Sbjct: 635 IRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + G+ SQ+ Sbjct: 695 EVTSNMRRQAKAVNF--------------GIVYGISDYGLSQS----------------- 723 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + A + + GV + + + R Sbjct: 724 -------------LGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYV--TTLLHR 768 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 +P + R + + +NT + Sbjct: 769 RRYLPEITSRNFNL---------------RSFAERTAMNT------------------PI 795 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + DI+ + M K ++L VHDE++ E P+ + + +M Sbjct: 796 QGTAADIIKKAMIEMDKRLKDENLQAKLLLQVHDELIFEAPEEEIKILEKIVPEVMENAL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 +PLK + K + Sbjct: 856 E--LEVPLKVDYSYGKTW 871 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 100/693 (14%), Positives = 196/693 (28%), Gaps = 155/693 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET S ++A I ++ + T + Sbjct: 317 SIIAFDTETTSID----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQ 366 Query: 56 DLLQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110 + + + + HN ++ + + + + +++ T +LA ++ Sbjct: 367 SAKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMD 423 Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L L N+ + K + + A+ Y Sbjct: 424 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 477 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L L + E D + + + G ++D + L + E K L E+I L Sbjct: 478 EPHL---LDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALC- 533 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF + + T + +L+ IL+ + Sbjct: 534 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAK 593 Query: 287 SAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L + + R+ + G + TGR S QN+P + + Sbjct: 594 LYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 648 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +SC IA G + D + IE R+LA + ++ + AF N Sbjct: 649 --------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKN 688 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T F + + E R+I K + L Y G K Sbjct: 689 DEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKN------------- 731 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 K+ + + + + ++ + Sbjct: 732 -------------------------------LKIEANLAKTYIEKYFENFTSIKSYFEKV 760 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 I S R+ Y + Sbjct: 761 KNEAKANG--------------------------FISTLSGRKR----------YFDFEN 784 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641 ++ M+ Y + +I+Q + DI+ M K ++L +HDE++ E D Sbjct: 785 AKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEVKDELC 844 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK++ Sbjct: 845 ENFVKKTSDIMENIVK--LKVKLKTSSSIAKKW 875 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 98/711 (13%), Positives = 187/711 (26%), Gaps = 173/711 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------- 52 + +D ET + A + + A Sbjct: 346 VAVDTET----DMLDCVSCA------LVGVSLAVGPNAACYVPVGHGGKDMFAEKPDQLP 395 Query: 53 ---MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--- 106 + + L L D++V+ + N ++ + ++ GI+I + T V++ Sbjct: 396 LALVLAKLKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAP--YDDTIVMSFDLDAGQSL 452 Query: 107 --SSLKNACL-ALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + A LN K GK+ I+ + E Sbjct: 453 AGHGMDEAAKTHLNHICISFKDVCGTGKSQISFAEVPLDKAT-----------------E 495 Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+K E R L + + G ++D + + +L Sbjct: 496 YAAEDADVTLRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKVDREALSRLSA 555 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH 267 L+ +I L + T L LF G + T +IL Sbjct: 556 EFTAGIAALETEIHGLAGQPF-AIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQ 614 Query: 268 SNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVF 325 + +L+ S + L ++ D R+ + GA +TGR S Sbjct: 615 LKVQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGA-QTGRLSSTDP 673 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R +A G ++ AD + IE Sbjct: 674 NLQNIP------------------------IRTEVGRQIRHAFVAEPGNVILAADYSQIE 709 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+ A +A +AFANGEDI+ T + F +V+++ R K + A+ Y Sbjct: 710 LRLAAHMADVPALKEAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYG--- 762 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 L++ + +E + + ++ + L G Sbjct: 763 --ISRWGLAGRLEISADEAQDMISRYYERFPGISLYITDTIEKARSKGYTETLFGRK--- 817 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + +G Sbjct: 818 ------TWFPRIKASVQHERQGAERAAINAPIQGTSADII-------------------- 851 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 + + + + ++ + Sbjct: 852 -KRAMARMGPALAAEGLHDVKM--------------------------LLQVHD------ 878 Query: 626 LTVHDEIVSETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 E+V E P+ + +M P +PL E + Sbjct: 879 -----ELVFELPEGDVEQASAVIRRVMEGAAEPIVKLSVPLGVEIGHGPSW 924 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 94/671 (14%), Positives = 191/671 (28%), Gaps = 143/671 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDLLQYLRDETV---MCVAHNSLFE 76 ++A + ++ +D + + + + + + + HN F+ Sbjct: 359 QEAQLVGFSFCFDGKNAYYVPVGHRYLGVGNQLNLQEAKSAI--SRIFTHPLIGHNLKFD 416 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN-ACLALNFSEHLTKMEEGKALIA 133 L +TLG++ + + +L+ P L N + K Sbjct: 417 FSLIYRTLGLE-HIGKIYDSMILSWLYDSIAPVGLDKQMLKWFNHTMISFDSVVPKG--- 472 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQ 192 + T+ A F Y + + E + + L + E + Sbjct: 473 ---ENFSQVNIITATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYPFIKVLM 529 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G R+D+ L+ L++ ++ +L + I L G + L LF G+ Sbjct: 530 DMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLC-GETFNLNSPQQLAHILFENLGLK 588 Query: 253 LV---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA--VSSDGRLRG 307 T + L + DLIL+ S+ + L + R+ Sbjct: 589 PGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNETHRIHT 648 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + G + TGR S QN+P +R Sbjct: 649 SFLQNG-TATGRLSSKSPNLQNIP------------------------VRREEGRKIRQA 683 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I+ G L+ D + IE R+LA + +++F +DI+ T A+ F ++ + + Sbjct: 684 FISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLFG---EQEAMQ 740 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 +R I K + L Y G+ Sbjct: 741 KRFIAKSINFGLIYGMGS------------------------------------------ 758 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + ++ + +++ A + E + RR + Sbjct: 759 --KKLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQEEFLLENGYSQTLLGHRRYFDFK 816 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 R + +I Q + Sbjct: 817 RATDFMKANFLREG------------------------------------INSIFQGSAA 840 Query: 608 DILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLP 662 D++ M K ++L VHDE++ E P + + +M + +P Sbjct: 841 DLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAENYAKEVADIMNSI--YKLEVP 898 Query: 663 LKAEGYEAKRY 673 LK + Sbjct: 899 LKCGIAIGTNW 909 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 101/692 (14%), Positives = 188/692 (27%), Gaps = 163/692 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---------QSA 52 + + D ET S E I ++A+++ Sbjct: 321 NIVSFDTETTSL------------ENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEK 368 Query: 53 M-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGL--PSS 108 + + + L + HN F+ + K I + T +L P Sbjct: 369 IALKAIEKILE---KKVIGHNLKFDFKMLK---DYKIKTPTPFADTMILGWIIDPDSPVG 422 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + LN K GK + + A Y Sbjct: 423 LDSLAKRYLNHQNIKYKEIVGKNQN------FSEIDIKTAAKYASEDAIITLKLYEVLKE 476 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E+ + + E L + + G ++D++ + KLQ+ + Q+ + L ++I L Sbjct: 477 KTWEEVK---WDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNL 533 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + L LF + + + T + +L+ T + +L Sbjct: 534 AGSEF-NIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYRKF 592 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L E D + F + TGR S QN+P Sbjct: 593 DKLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIPTSTEIN------ 646 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R+ I + D + IE R+LA + + I+AF Sbjct: 647 --------------------IRNAFITDK--LFISLDYSQIELRLLAHFSKDPHLIEAFL 684 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N +DI++ T AK F + +KE R+I K + L Y G Sbjct: 685 NDKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGP------------------ 723 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + + + + V + Sbjct: 724 --------------------------KKLSETINVSTKEAKEFIEKYFENFSTVKDFIEK 757 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 RR + Sbjct: 758 TKVETKEKGYVETLFKRRRFFDFN------------------------------------ 781 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GYDIVLTVHDEIVSETPDTPY 641 ++ Y + I Q + DI+ + M + ++L +HDE++ E Sbjct: 782 SANARTLAAYEREAVNTIFQGSAADIIKKAMIDIKNKFPSSKMILQIHDELIFEI--DNK 839 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK AKR+ Sbjct: 840 DEAYEYKEIMENAIK--LEVPLKVGISFAKRW 869 >gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] Length = 886 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 99/685 (14%), Positives = 185/685 (27%), Gaps = 151/685 (22%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVM 67 ET P A + A A + E +S + +L D + Sbjct: 329 ETHGDNP----------HHADVIGLALATE-ERQYFLPFDVLKSEEAEPVRAWLADSEIP 377 Query: 68 CVAHNSLFERILF---KKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSE- 120 ++ GI + + A S L + Sbjct: 378 KRG----YDLHRIDLALHWQGIAFAGAAF-DVHLAAYLLDPTESNQTLSGLASKYGLAYL 432 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + GK + P + H+ L E + L Sbjct: 433 QADEDVFGKG--------AKYKVPDVDKLSEHMARKCLAVSELVPIQEKELAANEMLPLF 484 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + + +G ++ + + +L + KL ++I ++ + Sbjct: 485 HDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEF-NLNSPKQ 543 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L LF+ + ++ ++ T +L LIL + + L + Sbjct: 544 LGEILFVKLELPVIKKTKTGYSTDAEVLEKLAPYHDIVRLILQYRTLAKLQSTYVEGLLK 603 Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +SS G++ + A TGR S QN+P Sbjct: 604 EISSVTGKVHTYYRQTIA-ATGRLSSQYPNLQNIP------------------------I 638 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G ++ AD + IE RVLA I+ ++ +AF + DI+ T Sbjct: 639 RLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMD 698 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F +D+V R K + + Y L+ Sbjct: 699 VFGVGMDEVDSNMRRSAKAVNFGIVYG-----ISDYGLSQNLN----------------- 736 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + QGV + + + Sbjct: 737 ----------------------ITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVK 774 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR ++ L + R Sbjct: 775 TLLE--------------------------RRRYLPEINASNFNLRSFA---ERTAM--- 802 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ M + K ++L VHDE+V E P+ + L Sbjct: 803 ---NTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVP 859 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M++ +PLK+E + + Sbjct: 860 DVMSQALK--LSVPLKSEVSYGENW 882 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 102/670 (15%), Positives = 186/670 (27%), Gaps = 121/670 (18%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLLQYLRDETVMCVAHNS 73 L + I A E + + + S L L DE + + H+ Sbjct: 330 LKTITEENNIVTDRIVALAMTTTGEIQYYIEFKDFKESDIISPLKDILEDEHIRIIGHDL 389 Query: 74 LFERILFKKTLGIDIPSKR-WICTSVLARTNGLPSS---LKNAC-LALNFSEHLTKMEEG 128 E I +I + T V S LK+ L + G Sbjct: 390 KKEII---HFYPYEIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVG 446 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 K + NHV+ +Y + +E + + K + E L Sbjct: 447 KGKNQL-SLWAAPENEVKALLCNHVKVIAELAKYIQEKIE-DQGIHKLYY---EVELPLV 501 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + ++ G ++D +++L L+ + KL +I GI + L LF Sbjct: 502 EVLASMEFLGIKVDRNMLLALEVEFKEIIDKLTSEIY-SLAGISFNINSPKQLGEVLFEK 560 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304 G+ ++ T +L I + ++ L ++ R Sbjct: 561 LGLPPTKKTKTGYSTNADVLEKLQDQHEIIPKISEYRQVTKLKTTYVDGLLSIINPVTNR 620 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + Sbjct: 621 IHSSFNQTV-TATGRISSTEPNLQNIP------------------------VRLEMGRRL 655 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R I+ G + + AD + IE RVLA IA +D I AF +DI+ T ++ F P+++V Sbjct: 656 RKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVPMEEV 715 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + R K + + Y L++ S FE + + + Sbjct: 716 TSLMRGDAKAVNFGIVYG-----ISDFGLSQNLNIPVSKAKKYIESYFEKYPSIKEYMHN 770 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + ++ E L+ R + ++ + + Sbjct: 771 IVEEGKEKGYVVTLLNR---------RRYLPELKSSNFNIRSFGERIAMNTPIQGSA--- 818 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 ++ Y EN Sbjct: 819 -------------------------------------ADIIKIAMIAVYNRLKAEN---- 837 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663 + VHDE++ E P+ V + M +PL Sbjct: 838 -------------YDAKLIL--QVHDELIIECPENEIEEVSKILKESMENAIEMV--VPL 880 Query: 664 KAEGYEAKRY 673 K + A + Sbjct: 881 KVDLSYANNW 890 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 100/681 (14%), Positives = 205/681 (30%), Gaps = 139/681 (20%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVA-H 71 + K+G+ E + D + + +S + L + + +A Sbjct: 326 IEKIGLSIVREN-ELIAVGITLSDTEIYYIPVSGFVTESYLADRLSDVVSVASNRNIASA 384 Query: 72 NSLFERI-LFKKTL--GIDI-PSKRWICTSVLARTN---GLPSSLKNAC-LALNFSEHLT 123 N + + +F+K G + K +I T++ A ++ L+ + Sbjct: 385 NIK-DYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSK 443 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 GK I + + D+ + Y D + + + L + Sbjct: 444 TELLGKLSINKAVNEAEDNLIKYA-------CLSSYAYYKCADKITEQLKSENMYELFET 496 Query: 184 -ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + +G +D ++ +++ + L+++I + + L Sbjct: 497 IEMPLIFVLFEMQQQGISVDKQALVDYSKVLGTKISVLEKEIYEAAGEEF-NINSPKQLG 555 Query: 243 MYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + LF G+ ++ T +L IL + + L++ + Sbjct: 556 VILFERLGMPNGKKTKSGYSTAADVLEKLAPDYPVVSKILEYRQLAKLKSTYADGLTQYI 615 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 S DGR+ GT + TGR S QN+P Sbjct: 616 SEDGRIHGTFNQT-ITATGRISSTEPNLQNIP------------------------IRME 650 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R + +G + AD + IE R+LA ++G++ I+A+ + DI+ T A+ F Sbjct: 651 MGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATAAQVFGV 710 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+++V+ EQR K + + Y + L Sbjct: 711 PLEEVTDEQRRNAKAVNFGIIYGMS-----SFGLSQDLS--------------------- 744 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + + A + + L + Sbjct: 745 ------------------ISRKEAKEYIERYFASYPTIKTFIDGLVSDAKEKGYSLTMYN 786 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR + G+ + Sbjct: 787 RRREIPEIKSSNFMQ-----------------RSFGERVAM------------------N 811 Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 +Q + DI+ M N ++L VHDE++ ET + +V + M Sbjct: 812 APIQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMK 871 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 S +PL+ + E K + Sbjct: 872 NAVS--LKVPLEVDLKEGKDW 890 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 88/660 (13%), Positives = 182/660 (27%), Gaps = 132/660 (20%) Query: 27 QAVITLCAYAWDDEPV-KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 A+ + + + + + L E + H+ K G Sbjct: 328 DGEFFGLAFCAEPDVALCCFPDAMTDSYLERVRPVLAGERPGKIGHDLKRIMTAIGK-KG 386 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + T V + S + + ++ K Sbjct: 387 VALRGLSF-DTMVASYLLNPNRSDHSLA------TLVFELLGVK----WEQGPGARGGND 435 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLD 204 A A + + ++ + L+P + E L + ++ + G+ +D D Sbjct: 436 GRETAMRGAAEEAHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASMEEVGFSVDTD 495 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTL 261 + +L + + + +L+ I L G + L LF + T Sbjct: 496 QLSELGKELESQLSRLESRIFALA-GEHFNINSPKQLAEVLFQRLKLTPLKRTKTGYSTN 554 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 +L +T +LN + + ++ L GR+ + + TGR Sbjct: 555 VEVLQRLAVTHELPAEVLNYRSLAKLKSTYVDVLLRLAERTSGRIHTSFNQTV-TATGRL 613 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R +AS G +L+ AD Sbjct: 614 SSSEPNLQNIP------------------------VRTEVGRRIRQAFVASEGHRLLSAD 649 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA ++ + I AF G D++ +T A+ F + V+ E R KV+ Sbjct: 650 YSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRAKVINF--- 706 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ + + ++ Sbjct: 707 -----------GIVYGMSPFGLAA------------------------------ELEISQ 725 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 L + + GV + + Sbjct: 726 EEAALYIDRYFQIYHGVKAFIDRTICEARELG--------------------------FV 759 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617 RR ++K + +L +Q + D++ M Sbjct: 760 STFWGRRRAIPELKSSDQTVRQLGERL---------AVNTPIQGSAADLIKVAMIAISRR 810 Query: 618 ---TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + ++L +HDE++ E P+ + M + +PLK + + Sbjct: 811 LRSEQLETRMILQIHDELLFEVPEVELDVARRMATEEMEWAAT--LSVPLKVDIGVGTSW 868 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 92/661 (13%), Positives = 194/661 (29%), Gaps = 135/661 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGID 87 I A + + P ++ DET ++ R + + GI+ Sbjct: 331 DIVGMAVQNEKG-IFYLPTESTLKSP-VFKKWAEDETKKKTVFDAK--RTVIALRRHGIE 386 Query: 88 IPSKRWICTSVLARTNGLPSS---LKNACLALNFSE-HLTKMEEGKALIARFCKGSIDSP 143 + + + + S + F+E + GK + P Sbjct: 387 LKGIEF-DLLLASYLINPSESPSDFADVAKLHGFNEVQSDEAVYGKGAK-------LKLP 438 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + + + + +E + L D E L L+ + G ++D+ Sbjct: 439 DREIYEEHIARKAVGLTKLAETCRDVLKENDQ-LSLFYDLEMPLALILADMEWTGVKVDV 497 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 D + ++ + + ++++++I +L + L LF G+ ++ ++ T Sbjct: 498 DRLTEMGDELHNRLQEIEKEIYELAGQEF-NINSPKQLGHILFEKMGLPVIKKTKTGYST 556 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL ++ L + V + T ++TGR Sbjct: 557 SADVLEKLESSHEIVRYILEYRQLGKLQSTYIDGLLKVVHQNTHKVHTRFNQALTQTGRL 616 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + S + A Sbjct: 617 SSADPNLQNIP------------------------IRLEEGRKIRQAFVPSEKDWVIFSA 652 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA I+G+ I+AF DI+ T F+ ++V+ R K + Sbjct: 653 DYSQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVNF-- 710 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ SQN+ + Sbjct: 711 ------------GIVYGISDYGLSQNL------------------------------GIT 728 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + A + V + ++ + R +P + R Sbjct: 729 RKEAGQFIERYFASYPDVKEYMDEIVREAKRKGYV--TTLLHRRRYLPEITSRNFN---- 782 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + + +NT +Q + DI+ + M + + Sbjct: 783 -----------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDMAE 813 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E P ++ + +M +PLK + Sbjct: 814 RLKKEQLKSRMLLQVHDELIFEVPPDEIETMKKIVPDVMEHAVE--LKVPLKVDYAYGPT 871 Query: 673 Y 673 + Sbjct: 872 W 872 >gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 921 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 91/702 (12%), Positives = 192/702 (27%), Gaps = 158/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 L +D ET SP P A + +++ ++ +++ Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393 Query: 55 SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 ++ ++L V V N ++ I+ + G + + ++ T + + G + Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQF-DTMLASYVIQPEGRRHN 451 Query: 109 LKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L N+ G + + EY D Sbjct: 452 MDVLAKDLLNYDTITYDDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 496 Query: 168 EATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L++ E L + + G +D+ +L +E Sbjct: 497 DITFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 556 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLA 274 + L+ +I + G + T L+ LF + V + T +L Sbjct: 557 RHLESEIHRQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPI 615 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + +L+ + ++ L + V+ GR+ + A TGR S QN+P Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 672 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWI 392 +R + +++ D + IE R++A I Sbjct: 673 ----------------------IRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++A+ +G DI++ T A + P +V+ E R KV+ ++ Y Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YG 765 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + + +S+ M + + L G +V Sbjct: 766 LSRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIV------ 819 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + K E V ++ + Sbjct: 820 ---DINSTHKSAKEAAKRVAINSPVQGTSADMI---------------------KIAMIN 855 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + D + + + +V VH Sbjct: 856 IHEDIEKKHYRSR---------------------------MLLQVHDE---LVFEVH--- 882 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ M LP+ EG + Sbjct: 883 -----KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917 >gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 95/698 (13%), Positives = 181/698 (25%), Gaps = 159/698 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-------- 56 D ET S + I + + + A+ + Sbjct: 355 AFDCETDSLDRI----------HTRIVGFSLSRRAGTGIYVPLSVPDALLTQTLIEKQDA 404 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLK 110 L + HN F+ + ++ G+ P R T V A SL+ Sbjct: 405 FVQLERLFSVPACTLAMHNGKFDYEVL-RSNGLAEPRCRIADTMVAAWLLDPDRSAYSLE 463 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + Y D + Sbjct: 464 ALAADKLGLETIPYTDVVPKG------------------STFADIPLEQAVPYAAEDADL 505 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T +L++ +P + E + + + G I+ ++ E + E ++ Sbjct: 506 TWQLYRLFLPRLAAAKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIER 565 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276 + +I +L + T L+ LF + ++ T +L Sbjct: 566 IRREIYELVGHEF-NVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPR 624 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL+ + ++TL V + R+ + G + TGR S QN+P Sbjct: 625 KILDYRLKTKLFSSYVDTLPLMVDGNDRIHTSFIQTG-TATGRLSSREPNLQNIP----- 678 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R A G +L+ AD + IE +LA ++G+ Sbjct: 679 -------------------VRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSGDP 719 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 AF+ G D++ T A F D V+ + R K + + Y A Sbjct: 720 NLCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAG-----A 774 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L + + + F+ + + M + + + + G R + Sbjct: 775 LGIPRTQAAEFIEAYFKTYAGVRNFMNEMVNAAQQSGFVETIFGR---------RRYIRA 825 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + K G V + + DV Sbjct: 826 INSSSKIEKSGAERVAVNTPIQGSAADIV---------------------KKAMIDVAAA 864 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 + + ++L E Sbjct: 865 LKKTGSPARL---------------------------LLQVHDE---LIL--------EC 886 Query: 637 P-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P ++ + + M S +PLK R+ Sbjct: 887 PQESAAETASLIKQTMENVVS--LRVPLKVSVEIGPRW 922 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 94/687 (13%), Positives = 192/687 (27%), Gaps = 151/687 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAV----ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D E K G A A Q + A + L + S L+ L+ Sbjct: 327 DFE-DLLVQAQKSGKVALALQGRREKGLISVALCLSEGQNYLLPLNSSTETTSFALKLLQ 385 Query: 63 ----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 D + +++ + GI+I + + S ++ Sbjct: 386 NICVDSKIKKCCYDTKADL-WLLHYYGIEINQPGF-DVMLADYLLNPGKSARSLPET-AL 442 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 S ++EG + + + + L Sbjct: 443 SHLDIVLQEGSE----TYLPASAEVISR--------------LVDILQSKLLLQEQENLY 484 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 D E L + ++ G +D + + + E + ++ + L DI + G I + T Sbjct: 485 --YDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQVLTTDIYEHA-GEIFNINST 541 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ T ++L L+L + ++ L Sbjct: 542 KQLGSILFEKLKLKAGKKTKTGYSTDVTVLEELAGDHPVVSLLLEYRQLAKLKSTYVDGL 601 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + ++ G+L T + TGR S QN+P Sbjct: 602 TGLINPQTGKLHTTFHQAV-TATGRLSSSEPNLQNVP----------------------- 637 Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 A +R + + AD + IE R+LA IA ++ + AFA +DI+ T Sbjct: 638 -IRLDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTA 696 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F +D+V+ E R K + + Y + + + + F Sbjct: 697 SEVFGVAMDEVTPEMRGRAKAVNFGIVYG-----ISDFGLAKDIKVTRKEAGRYINNYFN 751 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + +++ + + E ++ R + + + Sbjct: 752 RYSGVKAYIDRVIREAREKGYVTTILNR---------RRYLPDLFSSNRVVRSF------ 796 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 G+ + +NT Sbjct: 797 -----------------------------------------GERTAMNTP---------- 805 Query: 594 GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + ++L VHDE++ + + + L Sbjct: 806 --------IQGSASDIIKLAMVLIYREMRKRKLSSTMILQVHDELIFDVVASEVEEMQNL 857 Query: 648 CS-LMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL + + Sbjct: 858 VKYYMENAVE--LSVPLVVDMKIGPNW 882 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 97/665 (14%), Positives = 199/665 (29%), Gaps = 137/665 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TL 84 Q I A A ++ E L+Q+L+DE ++ R + Sbjct: 328 HQGDILGLAIAHNNG-CYYIPTDEALR-SEALIQWLKDERKEKWLFDAK--RAVVALGWK 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLA--LNFSEHLTKMEE--GKALIARFCKGSI 140 I++ + + + +S + H+ + E GK R Sbjct: 384 NIELAGSTF-DLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAVYGKGAKRR------ 436 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 P + H+ K VE + ++L ++ E L ++ + G + Sbjct: 437 --IPDEKELGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVK 494 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D++ + ++ E + ++L++ I +L G+ + L LF + ++ ++ Sbjct: 495 VDVEQLEQMGEDLNARLEELEQTIHELA-GVSFNINSPKQLGEILFEKLQLPVIKKTKTG 553 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 T +L D IL+ ++ L + V G++ ++ Sbjct: 554 YSTSADVLEKLAGQHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFNQA-LTQ 612 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKK 375 TGR S QN+P +R + S Sbjct: 613 TGRLSSTDPNLQNIP------------------------IRLEEGRKIRKAFVPSEKDWF 648 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + IE RVLA A ++ ++AF D++ T F+ ++V+ R K + Sbjct: 649 ILAADYSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAV 708 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 709 NFGIVYG-----ISDYGLSQNL-------------------------------------- 725 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + A + V + + + + +R +P L R Sbjct: 726 -GITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYV--TTLLKRRRYLPDLTSRNFN 782 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + + + +NT +Q + DI+ + M Sbjct: 783 Q---------------RSFAERTAMNT------------------PIQGTAADIIKQAMV 809 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 ++L VHDE++ E P + L S+M + +PLK + Sbjct: 810 QMASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQAVE--LRVPLKVDVA 867 Query: 669 EAKRY 673 + Sbjct: 868 CGDTW 872 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 97/665 (14%), Positives = 194/665 (29%), Gaps = 135/665 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL 84 + + + + E+ + D + H+ F I++ K Sbjct: 344 KLAGLCVSIKEGSSYFLNINERLTENEFLEGFKSIFEDGEIKKYGHDLKNF--IVYLKQN 401 Query: 85 GIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSI 140 GI++ + T + A + A LN + + GK + GS+ Sbjct: 402 GIELNGVAF-DTMIGAYIINPSRETYTISELAADFLNTNVKPIEEMAGKGK-SFLPFGSM 459 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D + + ++ K D + L E L + + G++ Sbjct: 460 DVEELKNVVGLYPE--IIYKAMKKIDDKLNENDQLNLY--YKIELPLVRVLADMEFYGFK 515 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 I+++ + + + ++ +L I +L + L + LF + ++ ++ Sbjct: 516 ININELTVISRQLDEKINQLTLKIYELAGEEF-NINSPKQLGVVLFEKLELPIIKKTKTG 574 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 T +L IL + L ++ G++ + + Sbjct: 575 YSTDAEVLEELAEKHEIVSNILEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFNQTV-TV 633 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P +R + +G K Sbjct: 634 TGRISSTEPNLQNIP------------------------IKLEMGRNIRKAFVPCDGNYK 669 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LV AD + IE RVLA I ++ I AF N EDI+ +T +K F P ++V+ R+ K + Sbjct: 670 LVDADYSQIELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAV 729 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + G+ S++ Sbjct: 730 NFGIV--------------YGIGDFSLSKD------------------------------ 745 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + K+ V + D+ K Sbjct: 746 LGITRKEARNYIDGYLDKYANVRKYMHDIVAQ--------------------------GK 779 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + +RR ++K + + R +Q + DI+ M Sbjct: 780 EFGFVTTMFNRRRYLPELKASNFNVRSFG---ERIAM------NTPIQGSAADIIKIAMV 830 Query: 616 NAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 + ++L VHDE++ E ++ V + M A +PL + Sbjct: 831 MVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESMENAT--ALKVPLSVDVK 888 Query: 669 EAKRY 673 + Sbjct: 889 SGNSW 893 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 95/643 (14%), Positives = 193/643 (30%), Gaps = 134/643 (20%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + S L + +E ++ + HN +++++ ++ GI I + +++ Sbjct: 195 EEILSYLKKIFENEHLLKIGHNIKYDKLVLQRY-GIIIRG--FEDIMLMSYVLDSGRYSH 251 Query: 111 NAC----LALNFSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L + K + GK I+ + Y ++N + L K Sbjct: 252 DIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQEYVVEKSNVILQLWLL-LRAK 310 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 E +++RL + + + G +ID L+ ++ I+++ L+E I Sbjct: 311 LIAEKLLHVYERLDK------PMIDIVAQMETTGIQIDRQLLAQVSSEISKDLLCLEEKI 364 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLIL 279 L + L LF ++ T + + + + + IL Sbjct: 365 HNLAGEKF-NISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQINCQDNILIEHIL 423 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++L ++ + T ++ TGR + QN+P Sbjct: 424 EWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPNLQNIP-------- 475 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA KKL+ AD + IE R+LA +A + Sbjct: 476 ----------------VKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLY 519 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF N DI+ ++ F I++VS R K + ++ Y G+ Sbjct: 520 QAFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIY--------------GISP 565 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + +K + + + + G+ + Sbjct: 566 FRLANQLKIK------------------------------RSEATDYIQRYFDRFPGIHE 595 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + RR+ Y ++ Sbjct: 596 YIEKTKNFARKNSYVETIF--------------------------GRRIYYDEINSPKVS 629 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633 + R +Q + DI M K ++L +HDE+V Sbjct: 630 IRNL---NERAAINAP------IQGSAADITRRAMILVHKSIECHKLSTKMLLQIHDELV 680 Query: 634 SETPDTPYFSVGTLC-SLMTKN--PSWAKGLPLKAEGYEAKRY 673 E P+ V + M P +PLK + + + Sbjct: 681 FEAPEEEIEQVTNIITESMENACLPKINLRVPLKVDIKVSDNW 723 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 101/693 (14%), Positives = 196/693 (28%), Gaps = 155/693 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PS 55 S + D ET S ++A I ++ + T + Sbjct: 285 SIIAFDTETTSID----------TKEAKIVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQ 334 Query: 56 DLLQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110 + + + + HN ++ + + + + +++ T +LA ++ Sbjct: 335 SAKKAIE--LIFKHFIIGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMD 391 Query: 111 NACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L L N+ + K + + A+ Y Sbjct: 392 DLALRLFNYETLHFESLVKKG------ENFASVELEKACKYAAEDAYITLRFYLYFLKNL 445 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L L + E D + + + G ++D + L + E K L E+I L Sbjct: 446 EPHL---LDLAKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALC- 501 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF + + T + +L+ IL+ + Sbjct: 502 EDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAK 561 Query: 287 SAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L + D R+ + G + TGR S QN+P + + Sbjct: 562 LYSTYCEPLLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY---- 616 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +SC IA G + D + IE R+LA + ++ + AF N Sbjct: 617 --------------------KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKN 656 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T F + + E R+I K + L Y G K Sbjct: 657 DEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKN------------- 699 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 K+ + + + + ++ + Sbjct: 700 -------------------------------LKIEANLAKTYIEKYFENFTSIKSYFEKV 728 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 I S R+ Y + Sbjct: 729 KNEAKANG--------------------------FISTLSGRKR----------YFDFEN 752 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPY 641 ++ M+ Y + +I+Q + DI+ M K ++L +HDE++ E D Sbjct: 753 AKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEVKDELC 812 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V +M + LK AK++ Sbjct: 813 ENFVKKTSDIMENIVK--LKVKLKTSSSIAKKW 843 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 102/681 (14%), Positives = 185/681 (27%), Gaps = 159/681 (23%) Query: 28 AVITLCAYAWDDEPVKLWDRTE---------QSAMPSDLLQYLRDETVMCVAHNSLFERI 78 A + A D A + + L D V H+ + Sbjct: 348 AKLVGLGVALPDGQTAYVPLRHAQLGVTQVRPEAFTAAFREVLEDAAVKKGGHDLKALSL 407 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALN--FSEHLTKMEEGKALI 132 + GI + +L+ +L + LN Sbjct: 408 VLAN-DGITLHGAH-DDVELLSYLLNPSRREHALVDLSRERLNTELPPLP---------- 455 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------D 182 + + RA + EA R L L D Sbjct: 456 -----PAAEGKRGKKDRALADHTVEEVATGFAIRAEAARRLAPELWKELEAAKLAALARD 510 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L L + RG +D + + + + +++ + + L Sbjct: 511 MELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAGREF-NIGSNPQLV 569 Query: 243 MYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + + +L + I+ + S L+TL V Sbjct: 570 EVLFTELKLPIIKRGKTGPSADQEVLEKLSEEHPLPGAIIEYRSLSKLKSTYLDTLPTLV 629 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++DGR+ T A+ TGR S QN+P Sbjct: 630 AADGRIHTTYHQA-ATATGRLSSTDPNLQNIP------------------------VRTD 664 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A+ G +LV AD + +E R+LA IA + I+AF + EDI+ T A+ F Sbjct: 665 LGREIRRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGV 724 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 ++V +EQR + GL Sbjct: 725 AKEQVDREQRRVA--------------KMVNFGIAYGLSP-------------------- 750 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + + + ++ G+ + ++ + Sbjct: 751 ----------HGLGARLGIAQDVARDIIERYFTRYAGIRRYLEETVDRARKTGY------ 794 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + RR +D+ + A R Sbjct: 795 --------------------VETLYGRRRYMADLNSKNRGVAQAA---ERAAI------N 825 Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 +Q + D++ + M + ++L VHDE++ E PD V L M+ Sbjct: 826 MPIQGTAADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVEQVKALAVKAMS 885 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 +PLK E + + Sbjct: 886 SVAD--LKVPLKVEVGAGRSW 904 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 87/657 (13%), Positives = 178/657 (27%), Gaps = 151/657 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-- 90 + A+ E + + + + ++F+ KK L Sbjct: 346 VSIAYGPEQIYSILCDTNMDIEYLFGKLTEIAGSVKTF--AMFD---LKKYLPHVKAPDQ 400 Query: 91 KRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ +V A ++ L KA Sbjct: 401 EKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDEKADVMTKAC--------------- 445 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +A+ F + E L +D E L + G +++ + + Sbjct: 446 ------YEAYTAFAAVKPLRDKMQAEGMYHLF--TDIEMPLVFTLFDMEQAGIQVEAEAL 497 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 E + +L+++I ++ G + L + LF + ++ T Sbjct: 498 KFYGEQLGGRIVELEKEIYEMA-GETFNINSPKQLGVVLFDHMQLPNGKKTKTGYSTAAD 556 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L + IL + + L+ + +DGR+ G + TGR S Sbjct: 557 VLDKLAPDYPVVEKILEYRQLTKLKSTYADGLAVYIGADGRIHGKFNQT-ITATGRISST 615 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + G + AD + Sbjct: 616 EPNLQNIP------------------------VRMELGRLIRKVFVPKEGYVFIDADYSQ 651 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA +G++ I+A+ + DI+ T ++ F+TP ++V++ QR K + + Y Sbjct: 652 IELRILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTELQRRNAKAVNFGIVYG- 710 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + L + + + FE + + E L G Sbjct: 711 ----ISSFGLSQDLSITRKEAAQYIENYFETYPGIKRFLDDTVAHAKEEGYVVTLFGRRR 766 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + Sbjct: 767 PV---------PELKSSNFMQRN------------------------------------- 780 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 G+ +N Q + DI+ M + Sbjct: 781 ----------FGERVAMNAPI------------------QGSAADIMKIAMIGVNRELKE 812 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E V + M + +PL + + + + Sbjct: 813 KGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAAD--LDVPLIVDMHTGENW 867 >gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 921 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 92/702 (13%), Positives = 192/702 (27%), Gaps = 158/702 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------P 54 L +D ET SP P A + +++ ++ +++ Sbjct: 344 RVLSVDTETTSPNP----------AMAELLGISFSNQEKTGFYVSVKNSASLFQDKSFSL 393 Query: 55 SDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 ++ ++L V V N ++ I+ + G + + ++ T + + G + Sbjct: 394 EEIREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFILNNIQF-DTMLASYVIQPEGRRHN 451 Query: 109 LKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L N+ G + + EY D Sbjct: 452 MDVLAKDLLNYDTITYDDLVGTGKKK---------------KELTDIDPEQVAEYAAEDA 496 Query: 168 EATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L++ E L + + G +D+ +L +E Sbjct: 497 DITFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREI 556 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLA 274 + L+ +I K G + T L+ LF + V + T +L Sbjct: 557 RHLESEIHKQA-GRSFNIASTKELQKILFDDLKLKTVKKTQTGYSTDHEVLEELLGEHPI 615 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + +L+ + ++ L + V+ GR+ + A TGR S QN+P Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIA-ATGRLSSTDPNLQNIP-- 672 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWI 392 +R + +++ D + IE R++A I Sbjct: 673 ----------------------IRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++A+ +G DI++ T A + P +V+ E R KV+ ++ Y Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTP-----YG 765 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + + +S+ M + + L G +V Sbjct: 766 LSRNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIV------ 819 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + K E V ++ + Sbjct: 820 ---DINSTHKSAKEAAKRVAINSPVQGTSADMI---------------------KIAMIN 855 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + D + + + +V VH Sbjct: 856 IHEDIEKKHYRSR---------------------------MLLQVHDE---LVFEVH--- 882 Query: 633 VSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ M LP+ EG + Sbjct: 883 -----KKEKEEFKISMKKHMENAMP--LDLPILVEGKFGVNW 917 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 94/648 (14%), Positives = 190/648 (29%), Gaps = 145/648 (22%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + S L ++ +E + + HN +++++ + GI + + +++ S Sbjct: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG--FEDIMLMSYVLDSGRSSH 503 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + K L + K + S + + E+ + Sbjct: 504 DIA-----------SIAQKWL-SYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVI 549 Query: 171 RELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L+ L P E+ + + + G +ID DL+ ++ I++ L Sbjct: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAK 275 +E+I L+ + L LF ++ T + + + Sbjct: 610 EENIYDLSGEKF-NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL S ++L ++ + T ++ TGR + QN+P Sbjct: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---- 724 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R I+ KKL+ AD + IE R+LA IA Sbjct: 725 --------------------IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + F N DI+ A+ F I+KVS + R K + ++ Sbjct: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII--------------Y 810 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ + A + ++ + K + + Sbjct: 811 GISPFRL------------------------------ATQLRIPRSEAADYIKRYFHRFP 840 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 G+ + + RR+ Y ++ Sbjct: 841 GIHEYIEKTKNFVRQNGYVETIF--------------------------GRRIHYDEINS 874 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVH 629 S + +Q + DI M + K ++L +H Sbjct: 875 PKSSIR---------NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 Query: 630 DEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKGLPLKAEGYEAKRYR 674 DE+V E P+ + + M K P +PLK + ++ Sbjct: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 94/691 (13%), Positives = 191/691 (27%), Gaps = 151/691 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQY 60 S + D ET ++A I ++ + + + Sbjct: 317 SIVAFDTETTGLD----------TKEAKIVGFSFCSHESEAFYVPLAHDYLGVCKQISMQ 366 Query: 61 LRDETVMCV------AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112 + + + HN ++ + K + +P K + T +LA ++ Sbjct: 367 AAKKGIEKIYQSTVIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVL 425 Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 ++ + K + + A+ Y + Sbjct: 426 AKRIFDYETLHFEDLVKKG------ESFAGVDVEKACKYAAEDAYITLRFYLYFLKNLEK 479 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L E + + + + G ++D+ + L + Q+ K L E I L Sbjct: 480 SL---LELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLAGEK 536 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + S+ T + +L++ L IL + Sbjct: 537 F-NINSPKQVGDILFEKLKLPSGKKSKTGYSTDEKVLNNLIDEHLIIKEILAYRELAKLV 595 Query: 289 ILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + D R+ + G + TGR S QN+P + + Sbjct: 596 GTYCEPLLKLAKKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------ 648 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 ++C +A G + D + IE R+LA + ++ ++AF+N E Sbjct: 649 ------------------KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDE 690 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F + + R+I K + L Y G Sbjct: 691 DIHAKTAIMIFG----ESNYHTRSIAKSINFGLIYGMG---------------------- 724 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 Y + K+ + + + + ++ + Sbjct: 725 ----------------------YKTLSQNLKIEAKLAKEYIEKYFKNFTSIKTYFEKVKN 762 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 I R+ Y + ++ Sbjct: 763 EAKQNG--------------------------FIKTLLGRKR----------YFDFENAK 786 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDEIVSETPDTPYFS 643 M+ Y + + +Q + DI+ M K ++L +HDE++ E D Sbjct: 787 PMQIAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDELIFEVKDEFCDE 846 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + LK AK + Sbjct: 847 FAKNASDIMENIVK--LKVKLKTSSSIAKNW 875 >gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] Length = 884 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 99/686 (14%), Positives = 181/686 (26%), Gaps = 153/686 (22%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQSAMPSDLLQYLRDETVM 67 ET P A I +A + D + A + +L D Sbjct: 327 ETHGDNP----------HHADIVGLIFAATGQQFFMTLDVLQSDAATP-IRAWLADPERK 375 Query: 68 CVAHNSLFERI----LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSE 120 H + GI+ + + +L S Sbjct: 376 KRGH----DLHRTDLALHWH-GIEFAGAEF-DVQLAGYLLDPTDANQTLSGLAAKYGLSS 429 Query: 121 H-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + GK + +A ++A + E + +L Sbjct: 430 IRPDEEVFGKGA-KYKVPDVDVLSDHVARKAAVIEALVPV-----QQAELEKTEMHKLF- 482 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + +G ++++ + L + + L +I + + Sbjct: 483 -HELEMPLSRILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIAGVEF-NLNSPK 540 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF G+ ++ ++ T +L IL + + L Sbjct: 541 QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL 600 Query: 297 EAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + +S G++ + A TGR S QN+P Sbjct: 601 KEISGKTGKVHTYFRQTVA-ATGRLSSQFPNLQNIP------------------------ 635 Query: 356 PLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G ++ AD + IE RVLA I+ ++ +AF + DI+ T + Sbjct: 636 IRLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTAS 695 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F + V R K + G+ SQN+ Sbjct: 696 DVFGVAAEDVDSNMRRSAKAVNF--------------GIVYGISDYGLSQNL-------- 733 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + QGV + D+ + Sbjct: 734 ----------------------NITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYV 771 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 + RR ++ L + R Sbjct: 772 KTLLE--------------------------RRRYLPEINASNFNLRSFA---ERTAM-- 800 Query: 595 GKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M K ++L VHDE+V E P ++ L Sbjct: 801 ----NTPIQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELV 856 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 + M A +PLKAE + Sbjct: 857 PATMEAALELA--VPLKAEVSYGSNW 880 >gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2] gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2] Length = 884 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 93/679 (13%), Positives = 179/679 (26%), Gaps = 139/679 (20%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 ET P A I +A + QS + + ++L D Sbjct: 327 ETHGDNP----------HHAEIVGLIFAATGRQFFMTLNVLQSDAATPIREWLADPERKK 376 Query: 69 VAHNSLFERI----LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEH 121 H + GI+ + + +L S Sbjct: 377 RGH----DLHRTDLALHWH-GIEFAGAEF-DVQLAGYLLDPTDANQTLSGLAAKYGLSSI 430 Query: 122 LTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 GK + +A ++A + E + +L Sbjct: 431 RPDDEVFGKGA-KYKVPEMDVLSDHVARKAAVIEALVPV-----QQAELEKTEMHKLF-- 482 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E L + + +G ++++ + L + + L +I + + Sbjct: 483 HELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIAGVEF-NLNSPKQ 541 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L LF G+ ++ ++ T +L IL + + L + Sbjct: 542 LGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLLK 601 Query: 298 AVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +S G++ + A TGR S QN+P Sbjct: 602 EISEKTGKVHTYFRQTVA-ATGRLSSQFPNLQNIP------------------------I 636 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G ++ AD + IE RVLA I+ ++ +AF + DI+ T + Sbjct: 637 RLEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASD 696 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F P + V + R K + + Y L++ + F+ + Sbjct: 697 VFGVPAEAVDSDMRRSAKAVNFGIVYG-----ISDYGLSQNLNITRKEAARFIDQYFDVF 751 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + L+ R + + Sbjct: 752 QGVRRYMDDIVKDAKRDGYVKTLLER---------RRYLPEINASNFNQRSFAER----- 797 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + +NT T Sbjct: 798 ------------------------------------------TAMNTPIQG-----TAAD 810 Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + +VQ + ++L VHDE+V E P ++ L + M Sbjct: 811 IIKLAMVQ-------MDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAA 863 Query: 655 PSWAKGLPLKAEGYEAKRY 673 A +PLKAE + Sbjct: 864 LKLA--VPLKAEVSYGSNW 880 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 206/695 (29%), Gaps = 120/695 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQSAMPS------- 55 D ET GV Y + VI + +A P Sbjct: 139 FAFDTETT--------GVDVYQD--VIVGVSLTLPRAGYHVYIPVAHNNAGPQLRRSYVL 188 Query: 56 -DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKN 111 L +YL D TV V HN+ F+ + + G+ + T + + +LKN Sbjct: 189 NGLKRYLTDPTVGKVLHNAKFDIHMLLRH-GMRMRGLA-HDTMIAMKILNENEPSVALKN 246 Query: 112 ACLALNF------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 H + GKA D P + Y + Sbjct: 247 LATRYGKFFGFDGESHTFEDLFGKAC-------FADVPLDMALIYAAKDTHLTWELYKWQ 299 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 T+ L + E L + + G+ +D + E + E ++++ +V Sbjct: 300 MEHLTKR-EDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLV 358 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L L+ G+ T L + +L + Sbjct: 359 AHFGE--INFNSPAQLAEVLYDRLGLPQGK-ERSTDVKTLKGLKGRHPGIEPLLKYRELT 415 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + +DGR+ G+ A+ TGR++ QNLP + Sbjct: 416 KLLGTYVEALPHQLKADGRIHGSFNQ-VATVTGRFASREPNLQNLPPRA----------- 463 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 R I+A G L+ D + IE R+LA ++G+ + + G Sbjct: 464 -------------------RRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKG 504 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVME--LALGYQGGAKVFKTMASHCGLDLQQFS 463 ED+Y T A+ F P+ + + + LA+ Y L + Sbjct: 505 EDLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTSM-----FTLSEQLGISVEE 559 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + ++++ + + + L G + G + Sbjct: 560 AHRFIEGFYDEYPDVYAFIKDTWEFVKKNEYVATLYGRK---------RRFPGHREQAIV 610 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + A + + G+ + + P + + VKG+ + Sbjct: 611 YDQLAAKICKALGTERVPLDFWSNKGI------------PKDLKRKFGAVKGEVERVRRM 658 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDT 639 +Q + DI+ + N + G+ I TVHDE + DT Sbjct: 659 -------------AVNARIQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLLVRDT 705 Query: 640 -PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L + M + +P+K + R+ Sbjct: 706 ITLAEVEELEACMVRAAE--LEVPVKVDTEIMARW 738 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 188/689 (27%), Gaps = 156/689 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA + A A + + L L Sbjct: 443 MQASLCGIALALAPNDACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAG 502 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLA-LNFSEH 121 ++ + N F + GI + +++ ++ L + Sbjct: 503 ILKIGFNIKF-VAVLLAQHGITL--ANVDDIQLMSYALDAGRGSQKFESLAEHVLAHAVL 559 Query: 122 LTKMEEG--KALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLI 178 G K + + + A+ + + W++ E +++ L Sbjct: 560 GEGELVGSGKNKLTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLV--AERMTAVYETL- 616 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ER L + + RG ID ++ +L AQ +++ ++ +L I + Sbjct: 617 -----ERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPI-NVGSP 670 Query: 239 YALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLN 293 + LF G+ ++ T SIL IL S + Sbjct: 671 KQIGDILFGKMGLPGGTKTKTGAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTD 730 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L V+ + T A+ TGR S QN+P Sbjct: 731 ALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNIP---------------------- 768 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T Sbjct: 769 --VRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTA 826 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F PI + E R K + G+ Sbjct: 827 SEMFGVPIKDMPSEVRRRAKAINF--------------GIIYGIS--------------- 857 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A + + K + + G+ + E Sbjct: 858 ---------------AFGLANQLGIAREEASAYIKRYFERFPGIRAYMDETREFCRKHGY 902 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 R+ Y ++K + + R Sbjct: 903 VTTLF--------------------------GRKCHYPEIKASNASVRAF---NERAAIN 933 Query: 594 GGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP-YFSVGT 646 Q + DI+ M K ++L VHDE++ E PD ++ Sbjct: 934 ARL------QGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPV 987 Query: 647 LCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL + A + Sbjct: 988 VQHVMQDAPFPAVLLSVPLHVDARAADNW 1016 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 106/687 (15%), Positives = 189/687 (27%), Gaps = 146/687 (21%) Query: 12 SPQPLPKVGVWAYA-----EQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDET 65 S + G++ A QA + A A D + Q ++L ++L D Sbjct: 321 SALQGTEHGLYVEAIGENPHQAEVLGLAAAVGD-TAYVVPVAALQQPFTAELRKWLEDAD 379 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWI----CTSVLARTNGLP---SSLKNACLALNF 118 F+ + LG W + A +L C Sbjct: 380 KPKNG----FDTHKIELALGW--RGIEWHGAAFDVQLAAYLLDPTDTNLTLNALCDRYGQ 433 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 S E A+F ++ + + EL+ L Sbjct: 434 SSVPH-DEAVYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELYFEL- 491 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E+ L ++ + +G +++ + +L + + +I +L + + Sbjct: 492 -----EQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEMEF-NIGSP 545 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF G+ + ++ T +L LIL+ S + L Sbjct: 546 KQLGEVLFEKLGLPVQKKTKTGYSTDAEVLEKLAPYHEIVPLILHYRTLSKLQSTYIEGL 605 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + V G++ + A TGR S QN+P Sbjct: 606 LKEVRPETGKIHTYYRQTIA-ATGRLSSQFPNLQNIP----------------------- 641 Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G ++ AD + IE RVLA I+G++ +AF + DI+ T Sbjct: 642 -IRLEEGRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTA 700 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 F D+V R K + + Y L+ Sbjct: 701 MDVFGVSADQVDSNMRRSAKAVNFGIVYG-----ISDFGLSQNLN--------------- 740 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + + QGV + D+ Sbjct: 741 ------------------------ITRKEAAKFIEQYFEVFQGVRKYMDDIVMQARR--- 773 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 D + RR D+K L + R Sbjct: 774 -----------------------DGFVTTLLERRRYLPDIKASNFNLRSFA---ERTAM- 806 Query: 594 GGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP-DTPYFSVGT 646 +Q + DI+ M + ++L VHDE+V E P + Sbjct: 807 -----NTPIQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKEL 861 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + S M + +PLKA+ + Sbjct: 862 VPSTMAGALT--LDVPLKADVNYGVNW 886 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 86/597 (14%), Positives = 161/597 (26%), Gaps = 129/597 (21%) Query: 92 RWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 V + L + GK + + D Sbjct: 112 PLFDAGVAGYLLNPLKDTYDYDDLARDYLGLTVPSRAGLIGK-------QSVKMALETDE 164 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLV 206 +A + + + D + +D E L + G + + + Sbjct: 165 KKAFTCVCYMGYIAFMSADRLTEELKRTEMYSLFTDIEMPLIYSLFHMEQVGIKAERVRL 224 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKS 263 + + + + L++ I + T G + L LF + ++ T Sbjct: 225 KEYGDRLKVQIAVLEQKIYEET-GETFNINSPKQLGEVLFDHMKLPNGKKTKSGYSTAAD 283 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L +IL+ + L+ + D R+ GT + TGR S Sbjct: 284 VLDKLAPDYPVVQMILDYRQLTKLNSTYAEGLAVYIGPDERIHGTFNQT-ITATGRISST 342 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + +G + AD + Sbjct: 343 EPNLQNIP------------------------VRMELGREIRKIFVPEDGYVFIDADYSQ 378 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++G++ I A+ + EDI+ T ++ F+TP+D+V+ QR K + + Y Sbjct: 379 IELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVYG- 437 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + GL + + FE + + + E + G Sbjct: 438 ----ISSFGLSEGLSISRKEATEYINKYFETYPGVKEFLDRLVADAKETGYAVSMFGRRR 493 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + Sbjct: 494 PV---------PELKSANFMQRS------------------------------------- 507 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 G+ +N+ Q + DI+ M + Sbjct: 508 ----------FGERVAMNSPI------------------QGTAADIMKIAMIRVDRALKA 539 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL VHDE++ ET +V L M + L+ E + Sbjct: 540 KGLKSRIVLQVHDELLIETRKDEVEAVKALLVDEMKHAAD--LSVSLEVEANVGDSW 594 >gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 972 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 99/724 (13%), Positives = 192/724 (26%), Gaps = 171/724 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSAM------ 53 ++ ID ET P+ V A A D V + Sbjct: 363 EIGIDTETDGLDPMQCNIVG--------LCLAAAAKDGSVPKGYYIPLGHTDDIGFPYPA 414 Query: 54 -----------PSDLLQYLRD---------------ETVMC---VAHNSLFERILFKKTL 84 + + D V HN+ F+ + +T Sbjct: 415 GKGGNFDFNATKKWFIDFWNDSCTLPGDISDSGSKQPDSAKRSLVFHNAKFDLHVLARTF 474 Query: 85 GID---IPSKRWICTSVLARTNGLP---SSLKN-ACLALNFSEHLTKMEEG--KALIARF 135 G+ I S I T + A L N L + G K I Sbjct: 475 GLTQKQIDSANIIDTLIAAWMLSPGQTGLGLDNQVMQLLQHEMIPIENLIGRGKKQITFN 534 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 D+ Y A + + + + +++ E L + + Sbjct: 535 RTPIKDATEYGAEDAVY-----TLRLWAPLRAKLQKYDYEKYF--FSQEMPLLKVLYQME 587 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G +D ++ KLQ + +KL+++I + + L LF G+ + Sbjct: 588 GVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAGCEF-NIGSPKQLGEVLFDTLGLPEIK 646 Query: 256 MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQF 311 T ++L + + +I R ++ L V+ D R+ + Sbjct: 647 KR-STDAAVLEELSFRSAHPIVFAVIEYR-ELKKMQSTYVSVLPTLVNPDTKRIHTSFIQ 704 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 +G + TGR S QN+P +R+ + Sbjct: 705 WG-TATGRLSSRDPNLQNIP------------------------VRSDLGKQIRAAFVPQ 739 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 ++ D + IE R+LA ++G++ I+++ G DI+ T A ++ V+ + R Sbjct: 740 NPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRR 799 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 KV+ + Y L + FE ++ + + Sbjct: 800 DAKVVNFGVLYGMT-----AFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAH 854 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + L G + G+ + ++ + + Sbjct: 855 RDGYVETLSGRRRYIA---------GIDSSDRMESQMAERMAVNTPVQGSAADLI----- 900 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 ++ ++ + N Sbjct: 901 ----------------KIAMIRIQKRINDENLPLR------------------------- 919 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYE 669 M HDE+V E P ++ + M +PL A Sbjct: 920 --MMLQV-----------HDELVFECPKDQVEALSAMVKSEMEGAME--LKVPLVASVGF 964 Query: 670 AKRY 673 K + Sbjct: 965 GKNW 968 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 90/596 (15%), Positives = 165/596 (27%), Gaps = 127/596 (21%) Query: 92 RWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 S+ + L+ S GK+ + R + + + Sbjct: 364 PVFDASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIGKSSMKRAMEENKE----KA 419 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 ++ F + +L + E L + D G R++ L+ Sbjct: 420 VSCICYMSYVAFRSRDLLQEALEKAGMDKLF--YEIEMPLTYSLYRMEDAGIRVERKLLK 477 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 + + + +L++ I + T G + L LF I ++ T + Sbjct: 478 EYGDRLKVRIAELEQKIYEET-GETFNINSPKQLGEVLFDHMKIPGGKKTKTGYSTAADV 536 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L A LIL+ + + L+ + D R+ GT + TGR S Sbjct: 537 LEKLASDWPAVRLILDYRQLTKLNSTYADGLAAYIGPDERIHGTFNQT-ITATGRISSTE 595 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R + G + AD + I Sbjct: 596 PNLQNIP------------------------VRMELGREIRKVFVPQEGCVFIDADYSQI 631 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA ++G+ I A+ EDI+ T ++ F+ P+ +V+ QR K + + Y Sbjct: 632 ELRVLAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNFGIVYG-- 689 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + GL + + + FE + ++ + + E + G Sbjct: 690 ---ISSFGLSEGLSITRKEASEYIEKYFETYPGVKTFLDGLVAEAKELGYAASMFGRRRP 746 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + Sbjct: 747 V---------PELKSSNFMQRS-------------------------------------- 759 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 G+ +N+ Q + DI+ M Sbjct: 760 ---------FGERVAMNSPI------------------QGTAADIIKIAMIRVDGALRKQ 792 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL VHDE++ E V L M A + L+ E + Sbjct: 793 GLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAADLA--VSLEVEANAGDSW 846 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 110/665 (16%), Positives = 193/665 (29%), Gaps = 131/665 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82 A + A+A+ V + T + + + + + H++ + Sbjct: 398 RHADLGGLAFAFTPLDVWVVQPTIELSSAKIFEAVKPWFE-SNAPKLFHDAKAAIHVLAA 456 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGS 139 I + + ++ S L GK G Sbjct: 457 QH-IAVNG-QIDDAMLMDYVLEAHLSHDLVRISARELRRRIPTRDEVSGKGAKR---VGW 511 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 ++PP D R A L K L D ER L + + G Sbjct: 512 RETPPEDAARFLAESAAALRAAGSVLKARL-LADEKLLRVYEDIERPLVGVLARMESAGI 570 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-- 257 +D L+ + + + E ++L E+ + L LF G+ +V + Sbjct: 571 TVDASLLAQESKELGVEVEQLVEEAHAAAGHPF-NLSSPKQLAQILFAEQGLPVVKKTAS 629 Query: 258 --EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T + +LS + +IL + L+ L + DGR+ T A Sbjct: 630 GTPSTDEEVLSELALNYPLPKIILEHRRLTKLKSTYLDKLPTLIDRDGRIHTTFGQAVA- 688 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R+ A G Sbjct: 689 VTGRLSSMDPNLQNIP------------------------TRTPEGRRIRTAFTARRGWS 724 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + +E R++A ++ + + AF+ GEDI+ +T A+ F+TP+D+V+ +QR + KV+ Sbjct: 725 VIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRMAKVI 784 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ A + Sbjct: 785 N--------------FGLIYGMS------------------------------AFGLAQQ 800 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L + K GV + + A + Sbjct: 801 MGLDRQVAAAYVDEYFHKFPGVKRYMEKTRAQAAEDGYVETAF----------------- 843 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RRL D+ + A + +Q + DI+ M Sbjct: 844 ---------GRRLWVPDITAPRPMVRAAAERAAINA---------PMQGTAADIIKRAMI 885 Query: 616 NAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGY 668 K ++L VHDE++ E P V L LM +PL A+ Sbjct: 886 AVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMAGAAK--LSVPLIADVG 943 Query: 669 EAKRY 673 + Sbjct: 944 VGASW 948 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 107/697 (15%), Positives = 186/697 (26%), Gaps = 155/697 (22%) Query: 8 IETRSPQP---------LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPS 55 +ET K+G++ + + A A D+ V + + Sbjct: 302 LETTEQIDGFFADKMKNTHKIGLYPIRKDGTLFGLAAAISDKDVFILSNLNGMEHDRLTE 361 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGLP---SSL 109 +++ RD + + K+ D + V A S Sbjct: 362 NIVSVTRDG--------MQIDILDLKEALSVFPFDESDTKVHDIGVAAYLLNPMEDVYSY 413 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + K GK + F + +A Y D+ Sbjct: 414 DAIARDYLGATLPSEKELVGKDELNLFSFTNETFRKLFAYKA--------LIPYLAGDLL 465 Query: 169 AT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E + ++ E + RG R+D + + +L +I+ Sbjct: 466 MERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKLQSRIDELHTEIIGY 525 Query: 228 TDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ T +L IL Sbjct: 526 AGKEF-NINSPKQLGVILFEDMGLSGGKKTKTGYSTSVDVLEKIKNDHPIIPAILEYRQL 584 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L+ +S DGR+ GT + TGR S QN+P Sbjct: 585 TKLNSTYAQGLTAYISEDGRIHGTFNQT-ITATGRISSTDPNLQNIP------------- 630 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I +G V AD + IE RVLA ++ + AF N Sbjct: 631 -----------MKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLN 679 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DI+ TT ++ F+ PID+V+ QR K + + Y L + + Sbjct: 680 HVDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVYG-----ISAFGLSEDLGISRKEA 734 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 F ++ +S ++ V + G + + Sbjct: 735 ADYIEKYFATYKNIKSFLDRQVEEAKADGVVRTMFGRIRPV---------PELRSSNFMT 785 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 G+ +N+ Sbjct: 786 RS-----------------------------------------------FGERVAMNSPI 798 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDEIVSETPD 638 Q + DI+ M K G ++L +HDE++ ET Sbjct: 799 ------------------QGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVETAK 840 Query: 639 TPYFSVGTLCSLMTKNPSWAKG--LPLKAEGYEAKRY 673 V +M K A +PL+ E + Sbjct: 841 DEVDIVK---EIMEKEMMGAADMAVPLEIGISEGDNW 874 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 95/630 (15%), Positives = 181/630 (28%), Gaps = 141/630 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L + ++ V V H+ K I + + T++ A S Sbjct: 453 ELLKNVMENDKVKKVIHDGKNLVTFLNKN-NITVKEFDF-DTAIAAYLLDSAQS------ 504 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 N +E + K K + + Y Y +E Sbjct: 505 KYNLTELIEKYLN-KEIDGIESENEGILGSYIP------------KLYMILKSNIEKEKM 551 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 +L + E L + ++ G+ I+ ++ +L+ E ++ ++I +L D + Sbjct: 552 DKLY--YEVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELADEEF-N 608 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + ++ ++ T + +L I+ + + Sbjct: 609 VSSPKQLGKILFEKLDLPIIKKTKTGYSTNQEVLEKLLDKHEIIPKIMYYRQITKISSTY 668 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + DGR+ + TGR S QN+P Sbjct: 669 VEGLKNVIDEDGRIHSNFNQTV-TTTGRLSSTDPNLQNIP-------------------- 707 Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I G LV D + IE RVLA IAG++ I AF + DI+ Sbjct: 708 ----IRHELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHT 763 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T ++ F P++ V+ R+ K + + Y + L + + Sbjct: 764 KTASEVFKVPVEDVTSLMRSRAKAVNFGIVYG-----ISAFSLSQDLKIPKAEAQEYMNI 818 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 FE + + +S+ + + E ++ R + K + Sbjct: 819 YFERYPKIKSYLENIVSEAEEKGYVLTILNR---------RRFIPEINASNKIV------ 863 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 G+ +N Sbjct: 864 -----------------------------------------KALGERLAMNAPI------ 876 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644 Q + DI+ M N K ++L VHDE++ + + V Sbjct: 877 ------------QGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELILNVKENEFEEV 924 Query: 645 GTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + M + G L + K + Sbjct: 925 KKIVVDEMENAIKLSVG--LDVDINSGKTW 952 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 102/662 (15%), Positives = 204/662 (30%), Gaps = 139/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86 I A A +E + RT+ + S +L DE+ S+F+ I+ K G+ Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKK----SVFDGKRAIVSLKWQGV 387 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSIDS 142 + ++ + + S ++ + + GK + Sbjct: 388 HLRGIQF-DLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAVYGKGAKQK-------- 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ ++ + ++ +D E L + + G ++D Sbjct: 439 VPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ + ++ E +A++ K+++++I +L + L + LF + ++ ++ Sbjct: 499 VERLKEMGEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D T+ ++TGR Sbjct: 558 TSAEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGR 617 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R I + Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFIPSEPDWVIFS 653 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA ++ I AF +G DI+ T F+ ++V+ R K + Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFG 713 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 714 IV--------------YGISDYGLSQN------------------------------LNI 729 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 K + GV Q KD+ + + R +P + R Sbjct: 730 TRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL-- 785 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 + + +NT +Q + DI+ + M + Sbjct: 786 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLS 814 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 ++L VHDE++ E P + + +M +PLK + + Sbjct: 815 KRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGP 872 Query: 672 RY 673 + Sbjct: 873 TW 874 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 88/665 (13%), Positives = 174/665 (26%), Gaps = 140/665 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR---DETVMCVAHNSLFERILFKKT 83 +T A +E + E + + + N + Sbjct: 371 VTGLALCLGEEDIYCMAAGEKLSGEFLIRQVKALCALKPGSSHEVWVLNLK---EMLPYL 427 Query: 84 LGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGS 139 D V + L + KA + + Sbjct: 428 ETGDTAP--VYDGGVAGYLLNPLKDTYGYDDLARDYLGLTVPSRADLLAKADLG-DALWN 484 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRG 198 D+ C W+ ++ + L+K + E L + G Sbjct: 485 EDARAVTCACYMAYTVWKAAAPLTRQLKDTGMYALYK------EIEMPLIYSLYHMEQEG 538 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + + L+++I + T + L LF + ++ Sbjct: 539 VKVERAELEEYGNRLKVRIVDLEQEIYRDTGKEF-NINSPKQLGEILFEDMKMPGGKKTK 597 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ + L+ + DGR+ G + Sbjct: 598 TGYSTAADVLDKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRIHGKFNQT-IT 656 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R + G Sbjct: 657 ATGRISSTEPNLQNIP------------------------VRMELGREIRKVFVPKEGCV 692 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 V AD + IE R+LA ++G++ I+A+ + +DI+ T ++ F+ P+ +V+ QR K + Sbjct: 693 FVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAV 752 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + FE + + + Q E Sbjct: 753 NFGIVYG-----ISAFGLSEDLSISRKEAVEYINKYFETYPGVKIFLDGLVSQGKEQGYV 807 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L G + + + Sbjct: 808 TTLYGRRRPI---------PELKSANFMQRQ----------------------------- 829 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 G+ +N+ Q + DI+ M Sbjct: 830 ------------------FGERVAMNSPI------------------QGSAADIMKIAMI 853 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 + IVL +HDE++ ET + +V + M + L+ E Sbjct: 854 AVDRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAAE--LKVSLEVEAE 911 Query: 669 EAKRY 673 + + Sbjct: 912 VGRSW 916 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 96/665 (14%), Positives = 191/665 (28%), Gaps = 141/665 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTL 84 A I + A D T + + DET ++ + + Sbjct: 331 ADIIGFSVANDKGNFFFSKETALKS--DVFKTWAEDETKKKTV----YDAKRSEVSLRHH 384 Query: 85 GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEH-LTKMEEGKALIARFCKGSI 140 G+ + + + + + + ++ + GK R + Sbjct: 385 GVHLKGADF-DLYIASYLINPSQTIEDMASIAKNHGYNAIQSDEAFYGKGAKRRIPEEKE 443 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + A L K D E L D E L L+ + G + Sbjct: 444 LAGHLARKAA------ALMTLKEKLDSELKENQQSELF--YDLEMPLSLILADMESTGIK 495 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +DL+ + + + + + ++++ I +L G + L + LF G+ + ++ Sbjct: 496 VDLERLKTMGQDLLSKLDEIEKRIHELA-GEAFNINSPKQLGVILFEKLGLPAIKKTKTG 554 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 T +L + IL+ + L + V+ G++ ++ Sbjct: 555 YSTSADVLEKLENSHEIIRDILHYRQLGKLQSTYIEGLLKVVNYETGKVHTRFNQA-LTQ 613 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R + G Sbjct: 614 TGRLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWA 649 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE RVLA IA ++ I+AF DI+ T + F+ ++V+ R K + Sbjct: 650 IFAADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAV 709 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ SQ++ Sbjct: 710 NF--------------GIVYGISDYGLSQSL----------------------------- 726 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + GV Q D+ S R +P + R Sbjct: 727 -GITRKEAGKFIDRYLESYPGVKQYMDDIIHDAKQKGYV--STLLHRRRYLPEITSRNFN 783 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + + +NT +Q + DI+ + M Sbjct: 784 L---------------RSFAERTAMNT------------------PIQGSAADIIKKAMI 810 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + + ++L VHDE++ E P+ ++ + +M +PLK + Sbjct: 811 DMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIVPDVMENAVE--LKVPLKVDYS 868 Query: 669 EAKRY 673 + Sbjct: 869 FGPTW 873 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 103/673 (15%), Positives = 188/673 (27%), Gaps = 154/673 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 + + A+ + + D A +L D+ V V ++ + LG Sbjct: 360 HDSEVVAVAW-TNGSEIFTGDARLLQADL--FKAWLSDDQVTKVVFDAK-RTKVMLDYLG 415 Query: 86 IDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSID 141 ID + + + L + + GK Sbjct: 416 IDFAGV-VDDVLIGSYLLHARDNSNDLAEVAREFDMDDLSYDEAIYGKGAKRG------- 467 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLD 191 + + E+ R V L + + P + E L L+ Sbjct: 468 ----------VPEEAETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKIELPLALVL 517 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G +D ++ +Q + L+ DI K + L + LF G+ Sbjct: 518 ANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGHEF-NVNSPKQLGVILFEEMGL 576 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ ++ T + +L DLILN + + L E + DG++ Sbjct: 577 PVIKKTKTGYSTAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFIHEDGKIHSR 636 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 Q + TGR S QN+P +R Sbjct: 637 FQQT-LTSTGRLSSADPNLQNIP------------------------IRSEEGRSIRKAF 671 Query: 369 IA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + + +D + IE RVLA I+G+ +AF N EDI+ +T K +N P ++V+ Sbjct: 672 VPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSN 731 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y L Sbjct: 732 MRRNAKAVNFGIVY-----GISDYGLSQNL------------------------------ 756 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + + GV KD+ E + Sbjct: 757 ---------NISRPEAKNFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFN-------- 799 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR D+K + + + +Q + Sbjct: 800 ------------------RRRYLPDLKAKNFNVRSFAERN---------AMNTPIQGTAA 832 Query: 608 DILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKG 660 DI+ M K +++L +HDE+V E P ++ L +M Sbjct: 833 DIIKIAMVKMDEALKEHKLKANLLLQIHDELVFEVPKDEIETLEKLVTEIMGSAAQ--LD 890 Query: 661 LPLKAEGYEAKRY 673 +PL+ E + Sbjct: 891 VPLEIESNYGATW 903 >gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 884 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 88/674 (13%), Positives = 176/674 (26%), Gaps = 143/674 (21%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERI- 78 V + I +D ++ ++ + Q+L D F++ Sbjct: 329 VGENPHHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHR 383 Query: 79 ---LFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLT-KMEEGKAL 131 GI + + + + S L + + + GK Sbjct: 384 AQLALSW-KGIKLRGVSF-DVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGA 441 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 + + + + + + + E L + Sbjct: 442 KFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQEL--------YYELEHPLAGVL 493 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ++D + + +L I+ + K + + I + + L LF + Sbjct: 494 AEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTF-NINSPKQLGEVLFEKLQL 552 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 + ++ T +L IL+ + + L + V D G++ Sbjct: 553 PVQKKTKTGYSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHT 612 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + A TGR S QN+P +R Sbjct: 613 YYRQTIA-ATGRLSSQYPNLQNIP------------------------IRLEEGRKIRKV 647 Query: 368 IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G ++ AD + IE RVLA I+G++ +AF DI+ T F +V Sbjct: 648 FVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDA 707 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L Sbjct: 708 NMRRSAKAVNFGIVY-----GISDYGLSQNL----------------------------- 733 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + + +GV + + Sbjct: 734 ----------GITRKEASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQ------- 776 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR ++ S R +Q + Sbjct: 777 -------------------RRRYLPEINASN---YNLRSFAERTAM------NTPIQGTA 808 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 DI+ M + ++L VHDE++ E P+ ++ L +M + A Sbjct: 809 ADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LAL 866 Query: 660 GLPLKAEGYEAKRY 673 +PLK E E + + Sbjct: 867 DVPLKVEVDEGENW 880 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 102/662 (15%), Positives = 204/662 (30%), Gaps = 139/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86 I A A +E + RT+ + S +L DE+ S+F+ I+ K G+ Sbjct: 334 ILGFAIA--NEHGNFFIRTDTALSSSLFTTWLEDESKKK----SVFDGKRAIVSLKWQGV 387 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSIDS 142 + ++ + + S ++ + + GK + Sbjct: 388 HLRGIQF-DLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAVYGKGAKQK-------- 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ ++ + ++ +D E L + + G ++D Sbjct: 439 VPDEQVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ + ++ E +A++ K+++++I +L + L + LF + ++ ++ Sbjct: 499 VERLKEMGEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D T+ ++TGR Sbjct: 558 TSAEVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGR 617 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R I + Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFIPSEPDWVIFS 653 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA ++ I AF +G DI+ T F+ ++V+ R K + Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFG 713 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 714 IV--------------YGISDYGLSQN------------------------------LNI 729 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 K + GV Q KD+ + + R +P + R Sbjct: 730 TRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL-- 785 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 + + +NT +Q + DI+ + M + Sbjct: 786 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLS 814 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 ++L VHDE++ E P + + +M +PLK + + Sbjct: 815 KRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENAVQ--LRVPLKVDYHFGP 872 Query: 672 RY 673 + Sbjct: 873 TW 874 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 94/676 (13%), Positives = 179/676 (26%), Gaps = 146/676 (21%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 GV+ Y + + ++++ V + + + + N+ E Sbjct: 322 GVFIYRNKDNF-GVSLCFNNDNVYYIGKEGFVTEDYIIEKVRDLV----------NAKAE 370 Query: 77 RILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEG 128 + DI ++ S+ A + L + Sbjct: 371 LTILNIKENNDILENDDAESIFDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFDEIFP 430 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDL 187 K I N + Y +D + + L ++ E L Sbjct: 431 KTKKNETPSDEIPENILKYACYNA------YVAYKAKDALTEKLKETEMLDIYNNVEIPL 484 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + G + D + + E + L++DI + L LF Sbjct: 485 TYALYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGHEF-NINSPKQLGEILFG 543 Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + ++ T S+L IL + + L+ + D R Sbjct: 544 EMQLPGGKKTKTGYSTSASVLEKLEPDYPFVSKILEYRQLAKLKSTYADGLAVYIGEDNR 603 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + G + TGR S QN+P + Sbjct: 604 IHGKFNQT-ITATGRISSTEPNLQNIP------------------------VRMPLGREI 638 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R I G + AD + IE R+LA ++ + I A+ + +DI+ T + F+ P+++V Sbjct: 639 RKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVPLEEV 698 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KEQR+ K + + Y + Sbjct: 699 TKEQRSNAKAVNFGIVYGISSFGLSN---------------------------------- 724 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + E K + + G+ + + RR Sbjct: 725 ----------DLSISRKEAEQYIKDYFISYPGIKNYLDNSVKEAKEKGYSVTMFGRRRPI 774 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 L S + G+ + + +Q Sbjct: 775 P---------------ELTSGNFM--QRQFGERVAM------------------NSPIQG 799 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657 + DI+ M N K IVL VHDE++ E + V + M + Sbjct: 800 SAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAAH- 858 Query: 658 AKGLPLKAEGYEAKRY 673 +PL + + Sbjct: 859 -LNVPLDVDVQVGNNW 873 >gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 908 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 88/674 (13%), Positives = 176/674 (26%), Gaps = 143/674 (21%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERI- 78 V + I +D ++ ++ + Q+L D F++ Sbjct: 353 VGENPHHSDIAGLGL-YDGNKGYFLAFETLQSVNAEPIRQWLSDADKEKWI----FDKHR 407 Query: 79 ---LFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLT-KMEEGKAL 131 GI + + + + S L + + + GK Sbjct: 408 AQLALSW-KGIKLRGVSF-DVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGA 465 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 + + + + + + + E L + Sbjct: 466 KFKLPEEHLLGENLSLKAERVSRLVPVLKAKLEESGMQEL--------YYELEHPLAGVL 517 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ++D + + +L I+ + K + + I + + L LF + Sbjct: 518 AEMELAGIKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTF-NINSPKQLGEVLFEKLQL 576 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 + ++ T +L IL+ + + L + V D G++ Sbjct: 577 PVQKKTKTGYSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHT 636 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + A TGR S QN+P +R Sbjct: 637 YYRQTIA-ATGRLSSQYPNLQNIP------------------------IRLEEGRKIRKV 671 Query: 368 IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G ++ AD + IE RVLA I+G++ +AF DI+ T F +V Sbjct: 672 FVPSKPGWHILAADYSQIELRVLAHISGDEKLKEAFVKDMDIHTKTAMDVFGVSEAEVDA 731 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L Sbjct: 732 NMRRSAKAVNFGIVY-----GISDYGLSQNL----------------------------- 757 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + + +GV + + Sbjct: 758 ----------GITRKEASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQ------- 800 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR ++ S R +Q + Sbjct: 801 -------------------RRRYLPEINASN---YNLRSFAERTAM------NTPIQGTA 832 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 DI+ M + ++L VHDE++ E P+ ++ L +M + A Sbjct: 833 ADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPEVMEQA--LAL 890 Query: 660 GLPLKAEGYEAKRY 673 +PLK E E + + Sbjct: 891 DVPLKVEVDEGENW 904 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 96/660 (14%), Positives = 196/660 (29%), Gaps = 127/660 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 QA I A A +E + TE++ + R + ++ + G Sbjct: 329 HQAEIAGMAVA--NEKGCFYFPTEKAVKSDAFRAFARSQEKKKWLFDAKRAVVALAWH-G 385 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 +D+ + + + S + + + KG+ S P Sbjct: 386 VDLNGVDF-DLQMASYLLDPSLSSHEIS---DIATRKGTGGVAEDEAVY-GKGAKRSLPE 440 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + A H+ K +E ++L L E L ++ + G R+D + Sbjct: 441 EAALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQ 500 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ + ++ L++ I K + L + LF G+ V ++ T Sbjct: 501 LEEMGKDLSDRLNTLEKAIHKEAGEPF-NINSPKQLGVILFEKLGLPPVKKTKTGYSTSA 559 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 +L T + +L + L + + G++ ++TGR S Sbjct: 560 DVLEKLAGTHPIIEHLLLYRQLGKLYSTYIEGLLKVIDSETGKVHTRFNQA-LTQTGRLS 618 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380 QN+P +R +A G K+V AD Sbjct: 619 STDPNLQNIP------------------------IRLEEGRKIRKAFVASKEGWKIVAAD 654 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA I+G++ +AF G DI+ T F+ ++V+ R K + + Sbjct: 655 YSQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIV 714 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ SQ+ + Sbjct: 715 --------------YGISDYGLSQS------------------------------LGITR 730 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + A + V +++ + ++ RR + Sbjct: 731 KEAKDFIDRYLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQ------ 784 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 + + +NT +Q + DI+ M ++ Sbjct: 785 -----------RSFAERTAMNT------------------PIQGTAADIIKRAMVKMSEA 815 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ E + L +M + +PL+ + + Sbjct: 816 LEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTEVMEQALE--LDVPLQVDVSSGNSW 873 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 107/710 (15%), Positives = 192/710 (27%), Gaps = 167/710 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-------AMPSD 56 D E G+ +A Q + + A S + + Sbjct: 365 FAFDTE--------ASGLRPFASQ--LCGISLALSPGSAVYVPCGHSSGAQLSLAEVVAA 414 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115 L + D AHN+ F+ + +GI++ + T + A G + LK+ Sbjct: 415 LGPFFADPNKAKYAHNAKFDIEMLLG-VGIEVQGLAF-DTMIAAALLGKRAGLKDLAFYE 472 Query: 116 --LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + G+ + + Y D + T L Sbjct: 473 LQLPDPMTPIEDLIGRGTKQ---------------ISFAQVPIERATPYAAADADMTLRL 517 Query: 174 FKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P E L + + G +D + L + + +++ Sbjct: 518 VHALEPQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRMGTRIAAIEQ 577 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMSEGTLKSILSHSNITQL-- 273 +I ++ +G + + L LF G+ L Sbjct: 578 EIYQIAEGPF-NINSSDQLSDILFGKIGLSTEGVERTAKTKKYSITADTLERLRERDTSG 636 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + IL S ++ L V+ GR+ T GA TGR S QN+P Sbjct: 637 ICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYNQVGA-ATGRLSSNDPNLQNIP- 694 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R +A+ G + + AD + IE RVLA+I Sbjct: 695 -----------------------VRTQEGREIRRGFVAAPGHRFIAADYSQIELRVLAYI 731 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++AF G+DI+ T A+ F ID+V KEQR I K + + Y Sbjct: 732 TKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYG-----ISAFG 786 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ + S F + + +Q V + G Sbjct: 787 LAQRTEMGRSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQ---------R 837 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + +A + + + M Sbjct: 838 AMPELQSRGPRRAAAEREAINAPIQGTAADIMKIAMIKMA-------------------- 877 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + +R R + ++L Sbjct: 878 --------RALSERGLRTRL---------------------LLQVHDE---LIL------ 899 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWA----KG----LPLKAEGYEAKRY 673 E P+ V L +M S A +G +PL + + Sbjct: 900 --EAPEEEVALVAELVREVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNW 947 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 89/696 (12%), Positives = 193/696 (27%), Gaps = 156/696 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54 S + ID ET S ++ I + ++ + + + Sbjct: 354 SYIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKEYII 403 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + + + N F+ + K+ G ++ + T + A SL Sbjct: 404 QKFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFL 460 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + P T + ++ Y D + T Sbjct: 461 AAKYLMHKNIKYEEIV----------------PQHSTLKD--IPLEIASNYAAEDADITF 502 Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 LF L E + + + G +D + + + + QE K ++ Sbjct: 503 RLFNILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIE 562 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLIL 279 ++++ + + L LF I + + T +L + + ++ Sbjct: 563 NEVIQSIGIEF-NLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLI 621 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N + + L E ++ ++ + TGR S QN+P Sbjct: 622 NYRQLAKLKNTYTDNLIEFINEKTNKIHTNFIQTK-TATGRISSTAPNLQNIP------- 673 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R+ + G + AD + IE +LA ++ ++ Sbjct: 674 -----------------IKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESL 716 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF + +DI++ T +K F ++ R I K + + Y+ A L Sbjct: 717 IEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQE-----LS 771 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +++ S F + + ++ D + + L+ R + + Sbjct: 772 IKREEAQNFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKR---------RRYIREIN 822 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 G + + Sbjct: 823 SQNYLERTGAERMA----------------------------------------INSIIQ 842 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + ++ + Y N+ I+L VHDE++ E+P+ Sbjct: 843 GSASDIMKIAMIKVYNEFKNNNL-------------------KSKILLQVHDEMLIESPE 883 Query: 639 TPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M +PLK K + Sbjct: 884 EECEKAQIIIKEMMENAYP--LKIPLKTNIETGKSW 917 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 303 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 94/678 (13%), Positives = 194/678 (28%), Gaps = 149/678 (21%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLF 75 VGV +AE+ + A A E + + + + L Q V + F Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGEYLADKLAQ------VAKQTQIAAF 376 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + K + ++ ++ + V A A ++ + GK + + Sbjct: 377 HVKVLLKYVNVETWTQTFG-AEVAAYLLNP------LKTAYDYEDI------GKEYLGQI 423 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGER 185 G + + + + + L + E Sbjct: 424 FPGRQEVVGKKGDKDALAEKPEEMKRLGCFMAYVALAVKAPLEEALREAGMERIFQEIEM 483 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L ++ G +++ + + E + +L++ I G + L L Sbjct: 484 PLVFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQIC-GQAGEDFNINSPKQLGAIL 542 Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F + ++ T +L IL + + L+ + D Sbjct: 543 FEKMKLPGGKKTKTGYSTAADVLDKLAPKHPIVRDILEYRQLTKLKSTYADGLAGYIGED 602 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ T + TGR S QN+P Sbjct: 603 GRIHSTFHQT-ITATGRISSTEPNLQNIP------------------------IRMELGR 637 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+TP + Sbjct: 638 LIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHTPFE 697 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ QR K + + Y + L Sbjct: 698 EVTDLQRRNAKAVNFGIVYG-----ISSFGLSQDLS------------------------ 728 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + + + + + L Sbjct: 729 ---------------ITRKEAADYIERYFSTYPKIKGFLDGL------------------ 755 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 +++ K D ++ RR ++K + R + + Sbjct: 756 --------VKKGKEDGYVTTMFGRRRPIPELKSSNFMQRSFG---ERIAM------NSPI 798 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655 Q + DI+ M ++L VHDE++ ET + V + M + Sbjct: 799 QGTAADIIKIAMNRVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMRQAA 858 Query: 656 SWAKGLPLKAEGYEAKRY 673 S + L+ + + K + Sbjct: 859 S--LDVALEVDMHTGKNW 874 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 98/639 (15%), Positives = 187/639 (29%), Gaps = 131/639 (20%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGLPSS- 108 L + + +N + ++ K +I + ++ SS Sbjct: 361 EKDVLKLKDVFENPEIKKYGYNLKNDCLILK---PYEINLTGLYFDIAIAEYLIDSTSSN 417 Query: 109 --LKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +K+ L N + GK + K D+ + + K Sbjct: 418 YEIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDK-----GKE 472 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + T E + + E L + + G D +++ +L++ E K L+ I Sbjct: 473 ALITTIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIY 532 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 + G + L LF G+ + ++ T +L + D I Sbjct: 533 EYA-GENFNINSPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKITLYR 591 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++ L ++ GR+ + + TGR S QN+P Sbjct: 592 QYTKLQSTYVDGLLNIINPKTGRIHSSFNQT-ITTTGRISSTEPNMQNIP---------- 640 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A LV AD + IE R+LA IA ++ I A Sbjct: 641 --------------VRLEIGRELRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDA 686 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F+ G+DI+ T ++ FN P+D+V+KE R+ K + + Y Sbjct: 687 FSKGDDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYGISDFGLSNN---------- 736 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + + A++ V + Sbjct: 737 ----------------------------------LGISKQVAKEYIDNYFARYPYVKKYM 762 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 +D+ E I RR ++ + + Sbjct: 763 EDIVEKAKNDGYVETYI--------------------------GRRRYIPELGSNNFIMK 796 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 +L +Q + D++ M ++L VHDE++ E Sbjct: 797 NLGKRL---------AMNTPIQGSAADVIKIAMVKVYARLKSEGLKSKLILQVHDELIIE 847 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +PD+ V L M + L + K + Sbjct: 848 SPDSEKSYVADLLKEEMESAVD--LNVKLTVDAKWGKSW 884 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 184/659 (27%), Gaps = 156/659 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIP 89 A+ ++ + E DL L TV+ +LF+ + I+ Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398 Query: 90 SKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + A S L A L+ LI + Y Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSL------------LID------EKTEGY 440 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + W ++ E+ T ELF+ + E L + G R++ + Sbjct: 441 CRSCYEAYVIWAAAAVLEEKMKESGTEELFRTI------EMPLLFTLFAMEQAGVRVEAE 494 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + E + + +L+++I G + L + LF + ++ T Sbjct: 495 ALRFYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGVILFEKLKLPHGKKTKTGYSTA 553 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L + IL + + L+ + +DGR+ G + TGR S Sbjct: 554 ADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYICADGRIHGKFNQT-ITATGRIS 612 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R I G V AD Sbjct: 613 STEPNLQNIP------------------------VRMELGRLIRKVFIPEEGYVFVDADY 648 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +G+ I A+ +DI+ T ++ F+TP D+V++ QR K + + Y Sbjct: 649 SQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + L + Sbjct: 709 G-----ISSFGLSQDLS---------------------------------------ITRK 724 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + G+ + D + RR Sbjct: 725 EASEYIDRYFETYPGIKKFLDDTVAHAKEMGYVVTLFGRRRPVPELASSNFMQ------- 777 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 G+ + +Q + D++ M Sbjct: 778 ----------RSFGERVAM------------------NAPIQGTAADVMKIAMIGVHREL 809 Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 K +VL VHDE++ E + V + M + +PL+ + + + + Sbjct: 810 TERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 89/656 (13%), Positives = 184/656 (28%), Gaps = 154/656 (23%) Query: 38 DDEPVKLWDRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 +++ V L + ++ D L + +E + + H+ + K L I I + Sbjct: 345 NEDKVYLINFKNIYSVNKDEANLALKAIMENEELTKIIHDGKSLVTVLNK-LDISIKTFE 403 Query: 93 WICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + T++ A S + L + G+ I Y+ Sbjct: 404 F-DTAIAAYLIDSARSSYDLLTLINEYLG------EDITGEGEILEGKVNFKLRDIYELL 456 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + Y E L + ++ G+ I+ +++ Sbjct: 457 KKKIEEEKMEELYYKV-------------------EHPLIFVLSSMEALGFNINKNMLDD 497 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 L +E + +++I L + + L LF + ++ ++ T +L Sbjct: 498 LAIKFKEEITRTEKEIYDLAEEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVL 556 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I + + L + SDG + + + TGR S Sbjct: 557 EKLQDKHEIIPKITYYRQITKLNSTYVEGLKNVIDSDGHIHSSFNQTV-TTTGRLSSTEP 615 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384 QN+P +R I G L+ D + I Sbjct: 616 NLQNIP------------------------IKYEMGREIRKVFIPDEEGDILLSCDYSQI 651 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA ++ ++ I AF + DI+ T ++ F PI+ V+ R+ K + + Y Sbjct: 652 ELRVLAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVYG-- 709 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + L + + + FE + + + + + + E ++ Sbjct: 710 ---ISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNR--- 763 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + + + Sbjct: 764 ------RRFIPEIKSSNRIV---------------------------------------- 777 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 G+ +N + DI+ M N Sbjct: 778 -------KALGERLAMNAPIQG------------------SAADIIKLAMVNVYNKLKEK 812 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ + V + M K +PL+ + K + Sbjct: 813 ELKSTMILQVHDELILNVKENELEEVKQIVKDEMEKVLD--MKVPLEVDTNMGKTW 866 >gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1] gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1] Length = 875 Score = 303 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 94/652 (14%), Positives = 194/652 (29%), Gaps = 123/652 (18%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 +A +E + T+ + S ++L DE ++ + K GI++ Sbjct: 332 VGFALVNERGHFFIPTDIALASSRFKRWLEDEQCKKSVFDAKRAIVALKWN-GIELKGVD 390 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + A + + + + + KG+ + P A H Sbjct: 391 F-DLLLAAYLLNPTDANGDVAAV--AKTKQYTDVQSDEEV--YGKGAKQAIPPTNVLAEH 445 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + K + ++ L E L + + G ++D+D + ++ + Sbjct: 446 LVRKAKAIASLKETYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKE 505 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 + +++++ I +L G + L LF + +V ++ T +L Sbjct: 506 FTAQLEQIEQRIYELA-GTTFNINSPKQLGTILFEKLQLPIVKKTKTGYSTSADVLEKLA 564 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + IL+ + L + V D T+ ++TGR S QN Sbjct: 565 PYHEIIEQILHYRQLGKLQSTYVEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQN 624 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388 +P +R + S + + AD + IE RV Sbjct: 625 IP------------------------IRIEEGRKIRQAFVPSSDDWVIFAADYSQIELRV 660 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA IA ++ I AF + DI+ T F+ D+V+ R K + + Sbjct: 661 LAHIANDENLIAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIV-------- 712 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ SQN + + Sbjct: 713 ------YGISDYGLSQN------------------------------LGITRKEAAEFIE 736 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + GV + +++ + + RR Sbjct: 737 RYFRSYPGVKRYMEEVVQDAKQKGYVTTLLHRRRYLPDITSGNFN--------------- 781 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622 + + +NT +Q + DI+ + M + + Sbjct: 782 --VRSFAERTAMNT------------------PIQGSAADIIKKAMIDLANRLHEERLQT 821 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M S +PLK + + + Sbjct: 822 RLLLQVHDELILEAPKEEIELLKKIVPDVMENAVS--LRVPLKVDYHFGPTW 871 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 97/673 (14%), Positives = 183/673 (27%), Gaps = 136/673 (20%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL 74 K G++ ++ ++ A D V + + AM + T +C+ Sbjct: 329 KAGMYVISDSDILYGIAITCDARTVYVINSMSGVSSDAMSDIVRDIKTSGTSICIG---- 384 Query: 75 FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKA 130 + + + + A + + L K GK Sbjct: 385 -DIKSCLNDMDFSECDTNVLDVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKELTGKE 443 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + F S + +A + K +L+ + E Sbjct: 444 ELNAFTFISDNFLELFAYKALVP-LLAMDTLIEKLKGTGMYDLYM------NVELPTVYT 496 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + RG R+D + + + K+L + I++ + L LF Sbjct: 497 LHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIEYAGKDF-NINSPKQLGPVLFEDMA 555 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 + ++ T +L + IL S L +SSDGR+ G Sbjct: 556 LPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQLSKLNSTYAIGLGSFISSDGRIHG 615 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + TGR S QN+P +R Sbjct: 616 TFNQT-ITATGRISSTDPNLQNIP------------------------MRMELGRLIRKA 650 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I +G V AD + +E RVLA ++ + AF N DI+ TT ++ F PID+V+ Sbjct: 651 FIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVFGVPIDEVTPL 710 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + + Y L + + + ++ ++ +++ Sbjct: 711 QRRHAKAVNFGIVYG-----ISAFGLSEDLGISRKEASDFIEKYYDTYKSIKTYLDGQVK 765 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 E + G + + Sbjct: 766 FAKENGYVKTMFGRIRPI---------PELKSSNFMQRS--------------------- 795 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 G+ +N+ Q + Sbjct: 796 --------------------------FGERVAMNSPI------------------QGSAA 811 Query: 608 DILCEGM----KNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKG 660 DI+ M + G ++L +HDE++ ET +V + M Sbjct: 812 DIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEMMHAAD--MT 869 Query: 661 LPLKAEGYEAKRY 673 +PL+ + Sbjct: 870 VPLEVGVASGNNW 882 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 104/668 (15%), Positives = 197/668 (29%), Gaps = 136/668 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + + + A+++D D DL + E V+H + ++ Sbjct: 320 YPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLREIFEREDCEFVSHEIK-DFLVKL 373 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEGKALIARFCK 137 GI+ +++ T+++A S L L + GK R + Sbjct: 374 SYKGIECK-SKYLDTAIMAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYE 432 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + + LF K K+L L + E L + +++ Sbjct: 433 EVSEEVMAEYICG---RCNHLFELKDKLMSFIEEMDMKKL--LLEIEMPLVEVLKSMEVD 487 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G+ +D +++ +L E I + ++ + I K G + L +LF + ++ + Sbjct: 488 GFTLDRNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKT 546 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L I+ + + + + R+ + A Sbjct: 547 KTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVA 606 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372 TGR S QN+P +R I + Sbjct: 607 -ATGRISSTEPNLQNIP------------------------VREEFGRQIRRAFIPRTKD 641 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G +V AD + IE RVLA ++ ++ I+AF N EDI++ T ++ F P V+ E R Sbjct: 642 GY-IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAA 700 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 KV+ G+ Sbjct: 701 KVVNF--------------GIIYGISDY------------------------------GL 716 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A K+ + + K++GV + + + ++ Sbjct: 717 AKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMN------------- 763 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR ++ T SQ R +Q + DI+ Sbjct: 764 -------------RRRYIPEINSRNF---TQRSQAERLAM------NTPIQGSAADIIKM 801 Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 M ++L VHDE+V +T V + M +PL Sbjct: 802 AMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVV 859 Query: 666 EGYEAKRY 673 E + Sbjct: 860 EIGVGPNW 867 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 103/694 (14%), Positives = 213/694 (30%), Gaps = 115/694 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTE--------QSA 52 ++ +D ET G+ Y + VI ++ D V + A Sbjct: 139 EIAVDTETT--------GLDVYND--VIVGLSFTLPKADYHV-YIPVAHKVAGQQLSRRA 187 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSL 109 + + L L D + + HNS ++ + + G+ + + T + +L Sbjct: 188 VLTALKPILTDVNIGKILHNSKYDIHMLIRH-GLRLRGIK-HDTMIAMAVLNENEPTLAL 245 Query: 110 KNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 KN F + EE + + Y + + Sbjct: 246 KNLATKYGKYFGFEDKSYTYEELFGKTSFAEIPLDAALVYAAKDTHLTYELYKWQRQHLN 305 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E+ R ++ L E L + + G+ ID+D ++ + + E L+ ++ Sbjct: 306 QKESLRLIYDEL------ENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLT 359 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNI--TQLAKDLILNRL 282 + + L L+ + ++ E T L D++L Sbjct: 360 EHFGD--INFNSPLQLAAVLYDKLKLPVIKGKERSTDVKTLKKLRDETKHEGIDVLLKYR 417 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L + + DG L G+ A+ TGR++ QNLP + Sbjct: 418 ELTKLLGTYVEALPQLIKKDGLLHGSFNQ-VATVTGRFASREPNLQNLPPRA-------- 468 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R I+A ++ D + IE RVLA ++G+ + + Sbjct: 469 ----------------------RRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQEPY 506 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME--LALGYQGGAKVFKTMASHCGLDLQ 460 G+D+Y T ++ F ++ + + + LA+ Y L + Sbjct: 507 LKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTSMWTLAD-----QLGIT 561 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 N F + + + + + L G + G + Sbjct: 562 VEEANQFIEDFFATYPDVYAFICATHEFAKQNEYVETLYGRK---------RRFPGHRE- 611 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 +V + + + + LP R + VKG+ + Sbjct: 612 --------KAIVYDKLATEICEILGTKAVPYDY--WQYKKELPVILRRQFRAVKGEVERV 661 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT- 639 +Q + DI+ + N +G I+ TVHDE + Sbjct: 662 RRM-------------AVNARIQGTAADIMKRALINLYNDGRKIIGTVHDEALLIVNKNI 708 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + + M ++ + +P++ + + R+ Sbjct: 709 TLAEVEKIEACMIRSAN--LNVPIRVDTELSTRW 740 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats. Identities = 95/675 (14%), Positives = 182/675 (26%), Gaps = 146/675 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYL-RDETVMCVAHNSL----------- 74 +T A +E + E + L R++ A NS Sbjct: 367 VTGLALCLGEEDIYCLAAGEQITGEYLLEQLRALCGRNQEQDNQAQNSQGQDNPGVRELW 426 Query: 75 -FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGK 129 + L + + V + + L + K Sbjct: 427 ALDLKSMLAYLELK-DTDPVYDAGVAGYLLNPLKDTYAYDDLARDYLGLTVPSRADLLAK 485 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLW 188 + + DC AW+ + + L+ D E L Sbjct: 486 EDLGDALWRGEKNA-VDCVCYMGYTAWKAAAPLAGQLKDTGMYSLYT------DIEMPLI 538 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + G +++ + + + + KL+++I + T + L LF Sbjct: 539 YSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGHEF-NINSPKQLGEILFEQ 597 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + ++ T +L IL+ + L+ + DGR+ Sbjct: 598 MELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRI 657 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G + TGR S QN+P +R Sbjct: 658 HGKFNQT-ITATGRISSTEPNLQNIP------------------------VRMALGREIR 692 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + G V AD + IE R+LA ++G++ I+A+ + +DI+ T ++ F+ P+D+V+ Sbjct: 693 KVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVT 752 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 QR K + + Y GL + + FE + ++ + Sbjct: 753 PLQRRNAKAVNFGIVYG-----ISAFGLSEGLSISRKEAVEYIDKYFETYPGVKTFLDGL 807 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 Q E L G + + + Sbjct: 808 VKQGKEQGYVTTLYGRRRPI---------PELKSANFMQRQ------------------- 839 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 G+ +N+ Q Sbjct: 840 ----------------------------FGERVAMNSPI------------------QGT 853 Query: 606 SRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658 + D++ M + IVL +HDE++ ET +V + M Sbjct: 854 AADVMKIAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEAVKEILTDKMKHAAD-- 911 Query: 659 KGLPLKAEGYEAKRY 673 + L+ E K + Sbjct: 912 LRVSLEVEAEVGKSW 926 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 103/668 (15%), Positives = 197/668 (29%), Gaps = 136/668 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + + + A+++D D DL + E V+H + ++ Sbjct: 84 YPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-DFLVKL 137 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCK 137 GI+ +++ T+++A S + L + GK R + Sbjct: 138 SYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLKKYLKVDVLSHEEVFGKGKDRRRYE 196 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + + LF K K+L L + E L + +++ Sbjct: 197 EVSEEVMAEYICG---RCSHLFELKDKLMAFIEEMDMKKL--LLEIEMPLVEVLKSMEVD 251 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G+ +D +++ +L E I + ++ + I K G + L +LF + ++ + Sbjct: 252 GFTLDRNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKT 310 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L I+ + + + + R+ + A Sbjct: 311 KTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVA 370 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372 TGR S QN+P +R I + Sbjct: 371 -ATGRISSTEPNLQNIP------------------------VREEFGRQIRRAFIPRTKD 405 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G +V AD + IE RVLA ++ ++ I+AF N EDI++ T ++ F P V+ E R Sbjct: 406 GY-IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAA 464 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 KV+ G+ Sbjct: 465 KVVNF--------------GIIYGISDY------------------------------GL 480 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A K+ + + K++GV + + + ++ Sbjct: 481 AKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMN------------- 527 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR ++ T SQ R +Q + DI+ Sbjct: 528 -------------RRRYIPEINSRNF---TQRSQAERLAM------NTPIQGSAADIIKM 565 Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 M ++L VHDE+V +T V + M +PL Sbjct: 566 AMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKESMENVIK--LKVPLVV 623 Query: 666 EGYEAKRY 673 E + Sbjct: 624 EIGVGPNW 631 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 184/659 (27%), Gaps = 156/659 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIP 89 A+ ++ + E DL L TV+ +LF+ + I+ Sbjct: 346 VGLAFSEKEIYTI-VAEGELTMEDLFSLVGTLAKTTVV-----ALFDVKAALSYVRIE-D 398 Query: 90 SKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + A S L A L+ LI + Y Sbjct: 399 PESCFDVGIAAYLLNPLKSDYTWLDVAAEHLSL------------LID------EKTEGY 440 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + W ++ E+ T ELF+ + E L + G R++ + Sbjct: 441 CRSCYEAYVIWAAAAVLEEKMKESGTEELFRTI------EMPLLFTLFAMEQAGVRVEAE 494 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + E + + +L+++I G + L + LF + ++ T Sbjct: 495 ALRLYGEQLGTKIVELEKEIYAQA-GEAFNINSPKQLGVILFEKLRLPHGKKTKTGYSTA 553 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L + IL + + L+ + +DGR+ G + TGR S Sbjct: 554 ADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYICADGRIHGKFNQT-ITATGRIS 612 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R I G V AD Sbjct: 613 STEPNLQNIP------------------------VRMELGRLIRKVFIPEEGYVFVDADY 648 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +G+ I A+ +DI+ T ++ F+TP D+V++ QR K + + Y Sbjct: 649 SQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHTPFDEVTELQRRNAKAVNFGIVY 708 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + L + Sbjct: 709 G-----ISSFGLSQDLS---------------------------------------ITRK 724 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + G+ + D + RR Sbjct: 725 EASEYIDRYFETYPGIKKFLDDTVAHAKEMGYVVTLFGRRRPVPELASSNFMQ------- 777 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 G+ + +Q + D++ M Sbjct: 778 ----------RSFGERVAM------------------NAPIQGTAADVMKIAMIGVHREL 809 Query: 619 ---KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 K +VL VHDE++ E + V + M + +PL+ + + + + Sbjct: 810 TERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAAQ--LDVPLEVDMHTGRNW 866 >gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] Length = 875 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 91/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ E V ++ + +G+ I + + + S+ + Sbjct: 355 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + SI + + Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 460 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 A E ++L + D E L + + +G +D + + ++ +A K L+E I L Sbjct: 461 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ V ++ T +L + D IL Sbjct: 521 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 103/674 (15%), Positives = 193/674 (28%), Gaps = 148/674 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A+ D + L + + +++ + + +F Sbjct: 390 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 449 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIA--RFC 136 +GI++ + + S K A L + + GK Sbjct: 450 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 507 Query: 137 KGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + + R V + +LF + D + ++++ D E L + + Sbjct: 508 VSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKME 560 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----- 250 G ID L+ + + + ++L+E ++ G L LF G Sbjct: 561 QNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVVLEG 619 Query: 251 ---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 + + T + +LS + L + L + V DGR+ Sbjct: 620 AKPKKTISGNYSTSEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVH 679 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + A TGR S QN+P VR Sbjct: 680 TTFEQAVA-VTGRLSSTNPNLQNIP------------------------IRTEEGRKVRE 714 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I+++G KL+ AD + IE R++A ++ + ++AF N EDI+ T A+ F DKV+ Sbjct: 715 AFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTP 774 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R I KV+ G+ ++N+ Sbjct: 775 NDRRIAKVINF--------------GLMYGMSPFGLAKNL-------------------- 800 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + A+ GV + + Sbjct: 801 ----------GIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTF-------- 842 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RRL ++ + A +Q + Sbjct: 843 ------------------GRRLWLPEIHAGGARRAAAERA----------AINAPMQGTA 874 Query: 607 RDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAK 659 D++ M K ++L +HDE++ E P+ V L +M Sbjct: 875 ADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIMDSVTE--L 932 Query: 660 GLPLKAEGYEAKRY 673 +PL AE + Sbjct: 933 HVPLIAEVGVGDNW 946 >gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] Length = 874 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 91/679 (13%), Positives = 185/679 (27%), Gaps = 135/679 (19%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 SP + + A I + ++ TE + ++ DE Sbjct: 311 YSPSAIVVEVLEENYHNAEIVGISI-VNEVGSYYIP-TEVAINSDMFKKWANDEKNEKWI 368 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN----FSEHLTKME 126 N+ + I + + + + +S N ++ + Sbjct: 369 FNAKQAIVSLGWN-DISLRGVTF-DIQIASYLIDPSASSHEMADISNRKRSYTVKSDEAV 426 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 GK + R + ELFK L E Sbjct: 427 YGKGKKR--QVPEEEIVAQHLVRKAAAINVLKEELESELKENEQFELFKDL------EMP 478 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L ++ + G I+ + +L++ E ++ + ++++I +L + L LF Sbjct: 479 LSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGVEF-NINSPKQLGEILF 537 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302 + +V ++ T +L + IL + L + + Sbjct: 538 DKLQLPVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQLGKLNSTYIEGLLKVIHQKS 597 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 598 GKIHTIFNQA-LTQTGRLSSTEPNLQNIP------------------------IRLEEGR 632 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + + AD + IE RVLA I+ ++ AF D++ T F+ Sbjct: 633 KIRRAFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVFHVSA 692 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D+V+ R K + + Y L Sbjct: 693 DEVTSLMRRTAKAVNFGIVY-----GISDYGLSQNL------------------------ 723 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + + + GV + + + E V + Sbjct: 724 ---------------GITRKEAKKFIDRYFDSYPGVKEYMESIVEEAR--VNGYVTTMLH 766 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 R +P + R + + +NT Sbjct: 767 RRRYLPEITSRNFNL---------------RSFAERTAMNT------------------P 793 Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E ++ L +M Sbjct: 794 IQGSAADIIKKAMVKMEEEMKEKGLKSTLLLQVHDELIFEVVQEEIETMKELVPKVMENA 853 Query: 655 PSWAKGLPLKAEGYEAKRY 673 + A +PLK + + Sbjct: 854 VNLA--VPLKVDFSFGDTW 870 >gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23] gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23] Length = 875 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 91/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ E V ++ + +G+ I + + + S+ + Sbjct: 355 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + SI + + Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 460 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 A E ++L + D E L + + +G +D + + ++ +A K L+E I Sbjct: 461 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIH-S 519 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 G + L + LF G+ V ++ T +L + D IL Sbjct: 520 LAGEAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 I + T+ ++ ++LRDE+ V +++ + K+ G Sbjct: 328 MNGKIIGYGLSNQSGH-YFIP-TDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ-G 384 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKGSID 141 +++ + + + A + ++ S + GK Sbjct: 385 LELNGVSF-DSLLAAYIINPAQNHEDFASVGKEYGLSSVQSDEQVYGKGAKQAVPNLDAL 443 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S + + K + + D E L + + +G ++ Sbjct: 444 SEHVARKASMLWDLTEKLKTALKENHQDAL--------FFDLELPLAFILGEMEYQGVKV 495 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + + + + + K+L+E I L G + L + LF + ++ ++ Sbjct: 496 DRTRLTSMGKELGGKLKELEEKIYDLA-GETFNINSPKQLGVILFEKLELPVIKKTKTGY 554 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L + IL+ + L + + D T ++TG Sbjct: 555 STSADVLEKLQSKHEIVEYILHYRQLGKLNSTYIEGLLKVIHEDSDKVHTRFNQALTQTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 615 RLSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSKEGWVIF 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I+G++ ++AF ED++ T + F+ D V+ E R K + Sbjct: 651 AADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNF 710 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + G+ SQ+ Sbjct: 711 GIV--------------YGISDFGLSQS------------------------------LN 726 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + V + +D+ S R +P L R Sbjct: 727 ITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYV--STLLNRRRYIPELTSRNFNL- 783 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 G+ + +NT +Q + DI+ + M + Sbjct: 784 --------------RSFGERTAMNT------------------PIQGSAADIIKQAMIDM 811 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L VHDE++ E P + + T+ +M +PLK + Sbjct: 812 AKRLEEENIEAKLLLQVHDELIFEAPQSEIEKLKTMVPDVMENAVE--LNVPLKVDFAFG 869 Query: 671 KRY 673 + Sbjct: 870 PTW 872 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 186/654 (28%), Gaps = 137/654 (20%) Query: 30 ITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + A + D + D +S + L +L D + + +S + K+ GI Sbjct: 331 LLGIALS-DGNKTQYIPFDIAAKSDI---LRCWLEDSSKIKYMSDSKASQAALKRA-GIQ 385 Query: 88 IPSKRWICTSVLARTNGLPSSLKN---ACLALNF-SEHLTKMEEGKALIARFCKGSIDSP 143 + + + + N S + L + + GK + Sbjct: 386 LAGVDF-DLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAKR--------AI 436 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P A HV + +EA + ++ D E L + + G ++ Sbjct: 437 PEIDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVNR 496 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + K+ + + ++ L+++I G + L + LF G+ ++ ++ T Sbjct: 497 ATLEKMGQELNEKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYST 555 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + L + + T + TGR Sbjct: 556 AADVLEKLKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRL 615 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +R + S L A Sbjct: 616 SSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSNENWILFSA 651 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA ++ + ++AF G D++ T F+ D+V R K + + Sbjct: 652 DYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGI 711 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ SQN+ + Sbjct: 712 V--------------YGISDYGLSQNLD------------------------------IT 727 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + A GV Q D+ + ++ Sbjct: 728 RKEAATFIDKYFASFPGVKQYMDDIVQNAKFNGYVTTILN-------------------- 767 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ L + R +Q + DI+ + M + Sbjct: 768 ------RRRYLPDITSSNFNLRSFA---ERTAM------NTPIQGSAADIIKKAMIDMDA 812 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 ++L VHDE++ E P + + +M +PLK + Sbjct: 813 RLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIE--LSVPLKVD 864 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 103/698 (14%), Positives = 196/698 (28%), Gaps = 166/698 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ------SAMPSDL 57 + D ET L QA + ++ +D + D Sbjct: 341 IAYDCETNGLDAL----------QARLVGFSFCFDGIHGYYVPISHDYLGVGKQVDTKDA 390 Query: 58 LQYLRDE-TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + + + V HN F+ ++ K + P + + +LA +S+ Sbjct: 391 KRAIEKIFSHPIVGHNLKFDLMIAKANFNLT-PKREIQDSMLLAYLLD-SASMMGL---- 444 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + L + GK +IA + + EY D A L +R Sbjct: 445 ---DILMEKFFGKKMIAYDEVVKK-------GKTFGDVDLERASEYASEDAVACFCLQER 494 Query: 177 LIPLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L D E + + +G +ID++ L+E +++ + +E+ Sbjct: 495 LKEELQAKRCAHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEE 554 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT---GIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 I + L LF G+ V T + L + +++ Sbjct: 555 IFAHAKQNF-NINSPKQLSRVLFDDLKLRGLRRVKGGYSTDEKTLEELKDSHPIIPILME 613 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + + ++ + G + TGR S QN+P Sbjct: 614 YREIFKLKNTYAEPILKLRTKENKIHTSFSQTG-TTTGRLSSRSPNLQNIP--------- 663 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 A +R IA GKKL+ D + IE R+LA + + + Sbjct: 664 ---------------VRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLD 708 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF DI++ T F +K +R I K + L Y G Sbjct: 709 AFRKDLDIHLRTAQMVFGED----AKNKRHIAKTINFGLIYGMGT--------------- 749 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + K+ T + + A V Q Sbjct: 750 -----------------------------RKLSQTLKISNTEAKEYIDRYFASFPTVRQF 780 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E + RR N + + Sbjct: 781 LRTEEEQILRRGYAQTLLGHRRYFNFKGVGDFMRSNFLREG------------------- 821 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSET 636 I Q + D++ M +G ++L VHDE++ ++ Sbjct: 822 -----------------INAIFQGSAADLMKLSMNKIYQTFQNSGVKMLLQVHDELIFQS 864 Query: 637 P-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P + + + ++M +PL+ + + Sbjct: 865 PEEEAEDAAREIENIMNGVYE--LRVPLRCNVAIGQNW 900 >gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816] Length = 694 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 90/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ + V ++ + +G+ I + + + S+ + Sbjct: 174 EVFRKWVESDQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 227 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + + A A + D Sbjct: 228 FTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDD- 282 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E ++L + D E L + + +G +D + + ++ +A K L+E I L Sbjct: 283 ---LEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 339 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ V ++ T +L + D IL Sbjct: 340 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 398 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 399 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 445 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 446 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 494 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 495 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 540 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 541 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 570 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 571 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 612 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 613 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 655 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 656 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 690 >gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99] Length = 885 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 91/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ E V ++ + +G+ I + + + S+ + Sbjct: 365 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 418 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + SI + + Sbjct: 419 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 470 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 A E ++L + D E L + + +G +D + + ++ +A K L+E I Sbjct: 471 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIH-S 529 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 G + L + LF G+ V ++ T +L + D IL Sbjct: 530 LAGEAFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 589 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 590 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 636 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 637 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 685 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 686 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 731 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 732 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 761 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 762 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 803 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 804 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 846 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 847 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 881 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 90/663 (13%), Positives = 169/663 (25%), Gaps = 131/663 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERI----LF 80 Q+ A A D + + E A + ++L D + F+ Sbjct: 335 HQSETIAVALATAD-VIFVVPMAELQASALGFVREWLADADMEKAG----FDLHRTELSL 389 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSE-HLTKMEEGKALIARFC 136 GI + + + A S+ C + GK +F Sbjct: 390 AWH-GIALKGISF-DIQLAAYLLDPTDSTQSISGLCGKYGLPTVQADESVYGKGA--KFK 445 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + +L+ L E+ L + + Sbjct: 446 LPEAGVLHGHIASKTDAVRSIAAIQREELEKTGMHKLYYDL------EQPLSRVLAGMEL 499 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G R D ++ +L + + + L + L LF G+ ++ Sbjct: 500 QGIRCDASVIEQLGAELESRISDIMTKVYTLAGMEF-NINSPRQLGEVLFEKLGLPVIKK 558 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFY 312 ++ T +L IL + + L + + + G++ + Sbjct: 559 TKTGYSTDADVLEKLEPYHEIIPSILLFRQLAKLQSTYVEGLLKEIRPNTGKIHTYYRQT 618 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371 A TGR S QN+P +R + Sbjct: 619 IA-ATGRLSSQYPNLQNIP------------------------IRLEEGRQIRKAFVPSE 653 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G ++ AD + IE RVLA I+G++ +AF DI+ T + F + V R Sbjct: 654 PGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMRRQ 713 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y L++ + F ++ + + Q Sbjct: 714 AKAVNFGIVYG-----ISDFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQART 768 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 L+ R + ++ Sbjct: 769 DGYVTTLLER---------RRYLPEIKASNFNIRSFAERTAMNTPIQGTAADI------- 812 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 I L R +G S + Sbjct: 813 --------IKLAMVRMDEQLRARGLRSRM------------------------------- 833 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 +L VHDE+V E P + L +M +PLKA+ Sbjct: 834 -------------LLQVHDELVFEVPADELELMKELVPQVMESAIK--LDVPLKADVSFG 878 Query: 671 KRY 673 + Sbjct: 879 DNW 881 >gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459] gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] Length = 875 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 90/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ + V ++ + +G+ I + + + S+ + Sbjct: 355 EVFRKWVESDQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + + A A + D Sbjct: 409 FTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDD- 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E ++L + D E L + + +G +D + + ++ +A K L+E I L Sbjct: 464 ---LEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ V ++ T +L + D IL Sbjct: 521 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes str. 4b F2365] gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175] gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220] Length = 875 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 90/637 (14%), Positives = 179/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ + V ++ + +G+ I + + + S+ + Sbjct: 355 EVFRKWVESDQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + + A A + D Sbjct: 409 FTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDD- 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E ++L + D E L + + +G +D + + ++ +A K L+E I L Sbjct: 464 ---LEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ V ++ T +L + D IL Sbjct: 521 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 676 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 103/668 (15%), Positives = 197/668 (29%), Gaps = 136/668 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + + + A+++D D DL + E V+H + ++ Sbjct: 320 YPLIYEGDVKKIAFSFD-GTTLYSDVER----LEDLRKIFEREDAEFVSHEIK-DFLVKL 373 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCK 137 GI+ +++ T+++A S + L + GK R + Sbjct: 374 SYKGIECK-SKYLDTAIMAYLLNPSESNYDLERVLKRYLKVDILSHEEVFGKGKDRRRYE 432 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + + LF K K+L L + E L + +++ Sbjct: 433 EVSEEVMAEYICG---RCSHLFELKDKLMAFIEEMDMKKL--LLEIEMPLVEVLKSMEVD 487 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G+ +D +++ +L E I + ++ + I K G + L +LF + ++ + Sbjct: 488 GFTLDRNVLKELSEKIDERISEILDKIYKEA-GYQFNVNSPKQLGEFLFEKLNLPVIKKT 546 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L I+ + + + + R+ + A Sbjct: 547 KTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVA 606 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372 TGR S QN+P +R I + Sbjct: 607 -ATGRISSTEPNLQNIP------------------------VREEFGRQIRRAFIPRTKD 641 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G +V AD + IE RVLA ++ ++ I+AF N EDI++ T ++ F P V+ E R Sbjct: 642 GY-IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAA 700 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 KV+ G+ Sbjct: 701 KVVNF--------------GIIYGISDY------------------------------GL 716 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A K+ + + K++GV + + + ++ Sbjct: 717 AKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMN------------- 763 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR ++ T SQ R +Q + DI+ Sbjct: 764 -------------RRRYIPEINSRNF---TQRSQAERLAM------NTPIQGSAADIIKM 801 Query: 613 GMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 M ++L VHDE+V +T V + M +PL Sbjct: 802 AMVKVYQEFKRLNLKSRLILQVHDELVVDTYKDELELVKEILKENMENVIK--LKVPLVV 859 Query: 666 EGYEAKRY 673 E + Sbjct: 860 EIGVGPNW 867 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 94/635 (14%), Positives = 173/635 (27%), Gaps = 142/635 (22%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L E+V H++ + + I++ + T V A +S Sbjct: 373 DPCLTVLKAICECESVKKYFHDAK-QALWMLHHHSIELKALA-ADTMVSAYLLNPTAS-- 428 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL + +RA ++ + K Sbjct: 429 ------------NYDINDVALEHLGMVLPAEGETAMASRAEAIRRLAQ-KLFEKLAERQE 475 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L L+ E L + + G +D + + + + L I +L G Sbjct: 476 DRL------LTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELA-G 528 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF + ++ ++ T +L LIL + Sbjct: 529 ENFNINSPKQLGPILFEKLKLPVLKKTKTGYSTDAEVLEKLAEEHEIVALILEYRQMAKL 588 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L+ V GRL T + TGR S QN+P Sbjct: 589 KSTYTDGLAALVDPQTGRLHSTFHQTV-TATGRLSSAEPNLQNIP--------------- 632 Query: 347 LNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I G ++ AD + IE RVLA ++ ++ + AF G Sbjct: 633 ---------IRLETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQG 683 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +DI+ T ++ F P+D+V+ E R+ K + + Y Sbjct: 684 QDIHTRTASEVFGVPMDQVTSEMRSRAKAVNFGIVY-----GISDFGL------------ 726 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 A K+ + + A+ GV Q + Sbjct: 727 ---------------------------ARDLKVSRKEAQGYIDHYFARCPGVRQYIDRVI 759 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + ++ RR ++ + Sbjct: 760 KEAKETGYVNTLLN--------------------------RRRYLPELFSKNFNIRNFGE 793 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639 + +Q + DI+ M +VL VHDE++ + P+ Sbjct: 794 RA---------AMNTPIQGTAADIIKLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPEN 844 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 S+ L M +PL + + Sbjct: 845 EIESLIMLVRQSMENALQ--LDVPLVVDIKLGPNW 877 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 87/651 (13%), Positives = 156/651 (23%), Gaps = 134/651 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQS-AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I ++ + L + + + + D V HN+ + + D+ Sbjct: 338 IEALGFSVEAGN-YLLPLGAADLEILAGVRRLFADAAVAKHMHNAK-D--FLRWAPDFDL 393 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + + V A + + P Sbjct: 394 ANICF-DSMVAAYLVNP------LAA-----NQQLEDVVH----QYLNLVLVPDGPAAPA 437 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A Y A ++ E L + + G +D D + Sbjct: 438 TAADCIR----RLYPVL--RAELRGYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEA 491 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 L E +L I L + L LF G+ ++ T +L Sbjct: 492 LSEEFGTRAGELAARICTLAGEDF-NLNSPRQLGYILFEKLGLPAGKKTKTGYSTDAGVL 550 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 L+L + L+ V GRL TL + TGR S Sbjct: 551 LDLAEKHEIAALLLEYRQLIKLKTTYADGLAALVDPATGRLHTTLHQTV-TNTGRLSSAE 609 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R I + L+ AD + Sbjct: 610 PNLQNIP------------------------IRMEEGRRIRKVFIPRDPARVLLTADYSQ 645 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++G+ I AF + +DI+ T A+ F P++ V+ E R+ K + + Y Sbjct: 646 IELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYG- 704 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + F + + E + Sbjct: 705 ----ISDFGLARDLKVTRAEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRRR 760 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 L + + Sbjct: 761 PL---------PELFSANHTVRSFGERAAVNTPIQGTAADII------------------ 793 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 +L + N Sbjct: 794 ---KLAMVKIHARMRERN--------------------------------------LKTL 812 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ + P +V L M +PL + + Sbjct: 813 MILQVHDELLFDVPAEEVCTVAPLVKAEMETVLP--LNVPLTVDLKIGHNW 861 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 103/668 (15%), Positives = 203/668 (30%), Gaps = 136/668 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + + I A+++ ++ V D + DL + E H + ++ Sbjct: 10 YPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEIFEKEEFEFTTHEIK-DFLVKL 63 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEGKALIARFCK 137 GI+ ++I T+++A S L L + GK + + Sbjct: 64 SYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLE 122 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + D + + LF K K+L L + E L + + + Sbjct: 123 EIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKKL--LLEIEMPLVEVLKLMEVS 177 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G+ +D +++ +L + I ++ + I K G + L +LF + ++ + Sbjct: 178 GFTLDKEVLKELSQKIDDRIAEILDKIYKEA-GYQFNVNSPKQLSEFLFEKLNLPVIKKT 236 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L I+ + ++ + + R+ + Sbjct: 237 KTGYSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDENNRVHSNFKQMV- 295 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--N 372 + TGR S QN+P +R I + Sbjct: 296 TATGRISSTEPNLQNIP------------------------IREEFGRQIRRAFIPRTKD 331 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G +V AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV+ E R Sbjct: 332 GY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAA 390 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + G+ S Sbjct: 391 KAVNFGII--------------YGISDYGLS----------------------------- 407 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 K+ + + +++GV + + + ++ Sbjct: 408 -RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMN------------- 453 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR ++ T SQ R +Q + DI+ Sbjct: 454 -------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQGSAADIIKM 491 Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 M + ++L VHDE+V +T V + M +PL Sbjct: 492 AMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVEIVKKILKENMENVIK--LKVPLVV 549 Query: 666 EGYEAKRY 673 E + Sbjct: 550 EIGIGPNW 557 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 94/682 (13%), Positives = 205/682 (30%), Gaps = 138/682 (20%) Query: 10 TRSPQPLPK---VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66 T L K + ++ + I ++A D + + + L ++ + Sbjct: 302 TYVKNVLGKFDVLSLYPFIYDGKIKAVSFACGDGS-FFVEIDDYDNF-----KLLNNDKL 355 Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHL 122 + H+ + ++ GI++ + + T+++ S + L Sbjct: 356 TLIGHDLK-DFLVNISYCGIELN-CKILDTAIMTYLLNPSESNYDISRVLKKYLKEDLQN 413 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 GK + D + +L + E E + + Sbjct: 414 IDDIVGKGRNKKSYDDIDKKLLVDYMCSAASNLSKLKDKLMSFIKEMEMEDLLK-----N 468 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + +++ G+ +D D++ + + I ++ K+ +DI + T L Sbjct: 469 VEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEKTDKIVKDIYDAAGYEF-NINSTKQLS 527 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 +LF + + ++ T +L+ I+ ++ + Sbjct: 528 EFLFDKLNLPAIKKTKTGYSTDMEVLAELIPYNDIVGEIIEYRQLMKLKSTYIDGFIPIM 587 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + R+ T + A TGR S QN+P Sbjct: 588 DENNRVHSTFKQTVA-ATGRISSTEPNLQNIP------------------------VREE 622 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R ++S ++ AD + IE RVLA ++ ++ I++F N EDI++ T ++ F Sbjct: 623 FGRRIRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFK 682 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 ++V+ E R K + + G+ S+++K Sbjct: 683 VSKEEVTSEMRRRAKAVNFGIV--------------YGISDYGLSKDLK----------- 717 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + + +++GV + + + Sbjct: 718 -------------------ISRKEAKEYIDNYFDRYKGVKNYIDSIVKFAKENGYVTTIL 758 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + RR G+ +NT Sbjct: 759 NRRRYIPEINSKNFNQ-----------------RSFGERMAMNT---------------- 785 Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + DI+ M ++L VHDE++ +T V L S+M Sbjct: 786 --PIQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIM 843 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 +PL + + K + Sbjct: 844 ENIIK--LKVPLVVDIGQGKNW 863 >gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] Length = 834 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 91/605 (15%), Positives = 168/605 (27%), Gaps = 138/605 (22%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + ++ + G+ + +LA +S A + Sbjct: 357 DLTVWARREGVRVQPG--EDPLLLAYLYDPTNS-DPAATVRRYG---------------- 397 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 S + W++ GE L+ + ER L + + Sbjct: 398 --AGDWSEDPAARALAAAELWRILGERLAG----EEALWWLYR---EVERPLAGVLAEME 448 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G R+D+ + L + +E ++ ++ +L G + L + L+ G+ Sbjct: 449 HAGVRVDVAYLEALSAELGREIAAIEAEVHRLA-GRAFNLNSRDQLEVILYDELGLTPTR 507 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 T + L + IL S L+ L V GR+ Sbjct: 508 RTQKTGRRSTSAAALEALVGAHPIVERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRY 567 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P +R + Sbjct: 568 HQTG-TATGRLSSSDPNLQNIP------------------------VRTEVGRRIRRAFV 602 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G LV AD + IE RVLA ++G++ + F DI+ T + F P + V +R Sbjct: 603 AEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEAVDPFRR 662 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L ++ FE + + +++ +Q Sbjct: 663 RAAKTVNFGVLYGMSPHRL-----SRELGIEYAEAERFIQRYFESYPRVQAYIERTLEQA 717 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 E + L G R + +++ E + Sbjct: 718 REKGYVETLFGR---------RRYIPDIRSRNRNVREAAERMAFNMPVQGTAADL----- 763 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 +L + + L Sbjct: 764 ----------------MKLAMVKLAPEIRSLG---------------------------- 779 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 ++L VHDE+V E P +V + +M WA +PL+ E Sbjct: 780 ------------ARLILQVHDELVLEAPQERAEAVARVVREVMEGA--WALDVPLEVEVG 825 Query: 669 EAKRY 673 + + Sbjct: 826 IGENW 830 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 92/658 (13%), Positives = 168/658 (25%), Gaps = 138/658 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPS---DLLQYLRDETVMCVAHNSLFERILFKK 82 A + ++ P DL L D + + H+ + R + K Sbjct: 331 MDAHLIGIGFSPSRGEGFYVPAEVLEKSPEVKSDLKAVLADPGITKIIHDGKYARTVLAK 390 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 I + T + A + + G L Sbjct: 391 ---IGMDFVYNFDTMLAAYLLDPSKP------RYDLESVVF-DNLGVELKG-------TE 433 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + K A ELF E L + + G ++D Sbjct: 434 DPGRRVAYLIPLKEIM---SEKLKSCAMEELFF------GVEMPLSFVLSDMEMTGIKVD 484 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259 + + L ++ ++L +I +L + L LF + ++ + Sbjct: 485 PEKLESLSREFGEKLEELTGEIYRLAGVEF-NINSPKQLGEVLFEKLNLPVIKKKKSGYS 543 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 T +L + IL + L V R+ + TG Sbjct: 544 TDAEVLEKLKNAHPVVEKILEYRFLMKMKSTYADGLLALVDKSTYRIHSNFNQT-ITATG 602 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +R +A L+ Sbjct: 603 RISSTEPNLQNIP------------------------VKTDIGRKIRGVFVAESPEHVLL 638 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE RVLA ++G++ I+AF GEDI+ T ++ F P ++V+ R K + Sbjct: 639 SGDYSQIELRVLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNF 698 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L + + + + + Sbjct: 699 GIIYG-----ISDYGLAQNLGISTAEAREYIENYLNRYPKVRDYIRETIRNARMSGYVTT 753 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556 ++ R + +L + SA + V + + H Sbjct: 754 ILNR---------RRYIPEINSRNYNLRSFAERVAMNTPIQGSAADIIKVAMVKITNHF- 803 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 R YG K ++Q Sbjct: 804 ----------------------------------REYGLKAKM-LIQ------------- 815 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ + P + V + M +PL + E + Sbjct: 816 -----------VHDELIFDVPKSELEVVKNIVKDDMENAIP--LKVPLVVDFKEGYTW 860 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 98/664 (14%), Positives = 179/664 (26%), Gaps = 132/664 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81 + A+ WD + L +L D H + + Sbjct: 353 HDGEVRGVAW-WDGHTAYFIPFERLVQSDMRPLADWLADARRPKRTH----DSHRAEVAL 407 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLT-KMEEGKALIARFCK 137 G+ + CT + A +L + + GK +F Sbjct: 408 FWHGLAFRGTSF-CTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAEDVYGKGA--KFKV 464 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 D+ R + A + R LF L E L + Sbjct: 465 PDRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDL------ELPLSSELAVMETV 518 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G R+D + E + + K++ +I +L G + T L LF G+ +V + Sbjct: 519 GVRVDAAALAAYGEELREAAAKVEREIYELA-GTTFNIGSTKQLGEILFDKLGLPVVKKT 577 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + IL+ + + L + + G++ Q Sbjct: 578 KTGYSTDADVLEELAPYHPIVEKILHYRQLTKLQSTYIEGLLKEIRPQTGKIHTYYQQTI 637 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372 A TGR S QN+P +R + Sbjct: 638 A-ATGRLSSQFPNLQNIP------------------------IRLEEGRKIRKAFVPSEP 672 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G ++ AD + IE RVLA ++G++ +AF G DI+ T F D+V R Sbjct: 673 GWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRVDARMRRQA 732 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y L++ + F + +++ + +Q Sbjct: 733 KAVNFGIIYG-----ISDFGLAQNLNISRKEAAEFIRQYFAVFSGVKAYRERIVEQARRD 787 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVM 551 L+G R + +L + +A + + + Sbjct: 788 GYVTTLLGR---------RRYLPDINASNYNLRSFAERTAMNTPIQGTAADIIKTAMVRL 838 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 RR+ +K Sbjct: 839 T-------------RRMRDVGLKS------------------------------------ 849 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE-GYE 669 + E+V E P ++ L +M +PLK + + Sbjct: 850 RMLLQVHD-----------ELVFEVPPDELDAMRELVTDVMESAVP--LDVPLKVDVSWG 896 Query: 670 AKRY 673 A Y Sbjct: 897 ADWY 900 >gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] Length = 912 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 101/694 (14%), Positives = 187/694 (26%), Gaps = 153/694 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------A 52 K+ D E+ S ++A + ++ +D E Sbjct: 345 KIGFDCESDSLN----------MQEANLVGFSFCFDGENAYYVPVGHHYLGVGCQLTHTQ 394 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 L + T + HN F+ L TL ++ + + +L P L Sbjct: 395 AKIALKRIF---TYPLIGHNLKFDLSLIFHTLELE-HTGEIYDSMILGWLYDSIAPIGLD 450 Query: 111 N-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N + K + T+ A F Y + + Sbjct: 451 KQMLKWFNHTMISFDSVVAKD------ENFSQVNIAAATQYAAEDAIATFRLYHRLEEVF 504 Query: 170 TRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + + L + E + + G ++D+ L+ L+E ++ +L I +L Sbjct: 505 YKREWSSILELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELC 564 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLASS 285 G + L LF G+ T + L LIL+ + Sbjct: 565 -GETFNLNSPQQLAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAHPVIALILDYREVN 623 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYG-ASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L S++ + R F + TGR S QN+P Sbjct: 624 KLKSTYIEPLLRFGSANDKHRIYTSFLQSGTATGRLSSKSPNLQNIP------------- 670 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I+ G L+ D + IE R+LA + I++F Sbjct: 671 -----------VRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQ 719 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 +DI+ T A+ F ++ ++RAI K + L Y G+ Sbjct: 720 DKDIHFETAARLFGVE---LAAQKRAIAKSINFGLIYGMGS------------------- 757 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + A ++ + +++ A + Sbjct: 758 -------------------------KKLAQTLQISLKEAKNYIESYFALFPTIKNFLNAQ 792 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + RR + + Sbjct: 793 KEFLLENGYSQTLLGHRRYFDFKNATDFMKANFLREG----------------------- 829 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTP 640 +I Q + D++ M K + ++L VHDE++ E P Sbjct: 830 -------------INSIFQGSAADLIKLSMCEIHKRYGHSDFKMLLQVHDELIFEAPQEK 876 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK K + Sbjct: 877 AHIYAQEAAQIMNHIYE--LEVPLKCGISIGKNW 908 >gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208] Length = 531 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 94/637 (14%), Positives = 183/637 (28%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ E V ++ + +G+ I + + + S+ + Sbjct: 11 EAFREWVESEQTKVV-----YDAKKTMVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 64 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + SI + + Sbjct: 65 FTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRL-------- 116 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 A E ++L + D E L + + +G +D + + ++ +A K L+E I L Sbjct: 117 VADLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSL 176 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ V ++ T +L + D IL Sbjct: 177 AGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 235 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 236 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 282 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 283 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 331 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ D+V R K + G+ S Sbjct: 332 HDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 377 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 378 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 407 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR +P +V R + + +NT Sbjct: 408 IVRFAKEKGYVETILHRRR--YIPEIVSRNFN---------------VRGFAERTAMNT- 449 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 450 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 492 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 493 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 527 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 103/674 (15%), Positives = 193/674 (28%), Gaps = 148/674 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A+ D + L + + +++ + + +F Sbjct: 331 VGVAFGTTDGKTSYVPIDNDVLLAQGLTLGTFKEIFGRVLEHKKPIKCGYDTKYMKHVFA 390 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIA--RFC 136 +GI++ + + S K A L + + GK Sbjct: 391 N-VGINLAGVS-DDVMLESYVLEAHRSHTIEKLAANWLKYELRGEEELLGKGAKKLSFSQ 448 Query: 137 KGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + + R V + +LF + D + ++++ D E L + + Sbjct: 449 VSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKME 501 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG----- 250 G ID L+ + + + ++L+E ++ G L LF G Sbjct: 502 QNGVLIDTKLLDQQTAQLNTKARELEEQAFEVA-GENFKLSSPKQLGEILFDKMGVVLEG 560 Query: 251 ---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 + + T + +LS + L + L + V DGR+ Sbjct: 561 AKPKKTISGNYSTSEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVH 620 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + A TGR S QN+P VR Sbjct: 621 TTFEQAVA-VTGRLSSTNPNLQNIP------------------------IRTEEGRKVRE 655 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I+++G KL+ AD + IE R++A ++ + ++AF N EDI+ T A+ F DKV+ Sbjct: 656 AFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTP 715 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R I KV+ G+ ++N+ Sbjct: 716 NDRRIAKVINF--------------GLMYGMSPFGLAKNL-------------------- 741 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + A+ GV + + Sbjct: 742 ----------GIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTF-------- 783 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RRL ++ + A +Q + Sbjct: 784 ------------------GRRLWLPEIHAGGARRAAAERA----------AINAPMQGTA 815 Query: 607 RDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAK 659 D++ M K ++L +HDE++ E P+ V L +M Sbjct: 816 ADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIMDSVTE--L 873 Query: 660 GLPLKAEGYEAKRY 673 +PL AE + Sbjct: 874 HVPLIAEVGVGDNW 887 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 92/682 (13%), Positives = 187/682 (27%), Gaps = 128/682 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDET 65 D E + ++ AY + A + WD T+ A + L+++L T Sbjct: 310 DFEKFLQESKDQMVGIAYFVEDNTLGLGVAIGERVGYSEWDLTDTEAK-AVLIEFLESAT 368 Query: 66 VMCVAH---NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + H N E + +G+ + + T + A + + + Sbjct: 369 YQKIVHDSKNFKHELL----KVGLGLNGVCF-DTFIAAYLLHPTNKSYDLAELEELFINK 423 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 + + L+ + D R N++ ++ + D Sbjct: 424 QSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLALSVTEAMKEALQEQNMTRLFYD 483 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G ++D + + E + L I + G + L Sbjct: 484 IEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLDTLTTSIYEAA-GESFNINSPKQLG 542 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + LF GI ++ T +L IL + ++ L + Sbjct: 543 VILFEKLGIPCAKKTKTGYSTAAEVLEALKNDYPIVAQILEYRQYAKLKSTYVDGLLNVL 602 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + ++ T + TGR S QN+P Sbjct: 603 TEQNKIHSTFNQT-ITATGRLSSTEPNLQNIP------------------------VKFE 637 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S + D + IE RVLA ++G+ IKAF DI+ T ++ F+ Sbjct: 638 MGKKIRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFH 697 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P + V+ QR+ K + G+ Sbjct: 698 VPFEDVTSMQRSNAKAVNF--------------GIVYGIS-------------------- 723 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + K+ + + K+ + ++ + Sbjct: 724 ----------AFALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQNGYVETLY 773 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 R+ ++ + ++ Sbjct: 774 H--------------------------RKREIPEILASNYNMREFGKRV---------AM 798 Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q S DI+ M + ++LTVHDE++ + V L M Sbjct: 799 NTPIQGTSADIIKIAMIRVHQKLKEHSLKSKLILTVHDELLIDAHKDEVEIVKKLLKEEM 858 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 +PL + ++ + Sbjct: 859 EHAAD--LSVPLVVDVHQGANW 878 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 91/695 (13%), Positives = 192/695 (27%), Gaps = 154/695 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54 S + ID ET S ++ I + ++ + + + Sbjct: 354 SYIAIDTETTSIN----------VYESNIIGISVSFKEFESYYIPIETKEKNSIGKDYII 403 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 + + + N F+ + K+ G ++ + T + A SL Sbjct: 404 QKFNELF-NSQPKLIGQNYKFDYKVLKRH-GFNV-ISAYFDTMIAAYVIDPNTKVSLDFL 460 Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + P T + ++ Y D + T Sbjct: 461 AAKYLMHKNIKYEEIV----------------PQHSTLKD--IPLEIASNYAAEDADITF 502 Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 LF L E + I + G +D + + + + QE K ++ Sbjct: 503 RLFNILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIE 562 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLIL 279 ++++ + + L LF I + + T +L + + ++ Sbjct: 563 NEVIQSIGIEF-NLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLI 621 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 N + + L E ++ T + TGR S QN+P Sbjct: 622 NYRQLAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATGRISSTAPNLQNIP-------- 673 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ + G + AD + IE +LA ++ ++ I Sbjct: 674 ----------------IKNERGRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLI 717 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF + +DI++ T +K F ++ R I K + + Y+ A L + Sbjct: 718 EAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQE-----LSI 772 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ S F + + ++ D + + L+ R + + Sbjct: 773 KRDEAQNFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKR---------RRYIREINS 823 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 G + + Sbjct: 824 QNYLERTGAERMA----------------------------------------INSIIQG 843 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + ++ + Y N+ I+L VHDE++ E+P+ Sbjct: 844 SASDIMKIAMIKVYNEFKNNNL-------------------KSKILLQVHDEMLIESPEE 884 Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M +PLK K + Sbjct: 885 ECEKAQIIIKEMMENAYP--LKIPLKTNIETGKSW 917 >gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879] gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879] Length = 1102 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 97/737 (13%), Positives = 182/737 (24%), Gaps = 196/737 (26%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------------ 51 + D ET +A + ++ +D Sbjct: 491 VAFDCETNGLD----------VREADMVGFSFCFDGLHAYYVPFLHGGIKREKSKYEVMK 540 Query: 52 ------------------------------------AMPSDL-----LQYLRDE-TVMCV 69 P+ + + L + + Sbjct: 541 SQSISQNLFSTEEAKPTFSLFDDTTMSKDSADNDTTNAPAQISQSDAKKALEILFSYPLI 600 Query: 70 AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA-CLALNFSEHLTKME 126 HN F+ + GI + +LA + S L N N + Sbjct: 601 GHNIKFDLHIAWHNFGIKPKHTP-QDSMLLAWLDDPSQSVSLDNLMKKHFNHNMIAFSDI 659 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 K + Y A F Y LF D E Sbjct: 660 VPKKA-TFDSIDIKTASNYAAEDAAA-----TFQLYFYFKNTLYPHLFTLAK---DLEFP 710 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 + D G I+ L+ + ++L ++I + G+ + + LF Sbjct: 711 FIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKA-GVSFNLNSPKQVAEILF 769 Query: 247 LITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 +D + T ++ L + L+L + + + ++ Sbjct: 770 DTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYREIFKLFSTYIEPILKLGKNEN 829 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T G + TGR S QN+P Sbjct: 830 RIYTTFLQTG-TNTGRLSSKSPNLQNIP------------------------VRSEMGRS 864 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R ++ +G KL+ D + IE R+LA +G+ +++F N DI+ T F +K Sbjct: 865 IRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHAETAKLLF-KDSNK 923 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 R+I K + L Y G Sbjct: 924 DFSLLRSIAKSINFGLIYGMG--------------------------------------- 944 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + T + + + A V Q + + + +R Sbjct: 945 -----ARKLSQTLNITQTEAKQYIEDYFATFPSVKQFLESQKDSILKNGYSSTLLGRKRY 999 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 + + I Q Sbjct: 1000 FDFFSATEFMRANFLREG------------------------------------VNTIFQ 1023 Query: 604 AISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656 + D++ M K ++L VHDE++ E D+ S+ L +M Sbjct: 1024 GSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELKEIMENI-- 1081 Query: 657 WAKGLPLKAEGYEAKRY 673 + +PL + Sbjct: 1082 YKLKVPLVCNLSIGNTW 1098 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 196/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R +P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 100/672 (14%), Positives = 192/672 (28%), Gaps = 136/672 (20%) Query: 31 TLCAYAWDDEPVKLWDRTEQS-AMPSD------LLQYLRDETVMCVAHNSLFERILFKKT 83 A A + + + + L+ D ++ ++ + F Sbjct: 365 VGLALATEPGRGWYLVFQSEESKVLDEAEVFNKLIPLFEDHAIVKTGYDIKADYHWF-NA 423 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLK-NACL-------------ALNFSEHLTKMEEGK 129 L I PS+ V+A + L S + GK Sbjct: 424 LNIS-PSRLLNDVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSPKTVEDYLGK 482 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 A + ++ + A G++ ++ A+R+L + + ER L Sbjct: 483 AGKRQLSPSAVKADDIGQWWAERADFVLRLGQWLEQ-GLASRQLSRV---YQEIERPLSK 538 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 I + G ++D++ V +L ++ + ++ L + L LF Sbjct: 539 TLAAIEENGVKLDVEFVHELSTRFKRDLEDIERQAHDLAGVEF-NLDSPKQLADVLFERM 597 Query: 250 GIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA-VSSDG- 303 G+ + + T + +L+ LIL + L + DG Sbjct: 598 GLPVKSKTASGAPSTNEEVLTELAAEHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDGD 657 Query: 304 -RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 RL T GA +TGR + QN+P Sbjct: 658 QRLHTTYNQTGA-QTGRLNSNDPNLQNIP------------------------VRSEEGR 692 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A G ++V AD + IE R++ ++ + I+AF G+DI+ T A+ + Sbjct: 693 SIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEEE 752 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +VS EQR K + L Y L + + + FE + + Sbjct: 753 QVSAEQRRSAKAINFGLIYGMS-----AFGLARQLGISRTEAKTYVDAYFERYPGVRRYM 807 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + E + + G L G+ + + Sbjct: 808 DETRAEAAESGYVETVFGRRLYL---------PGIQSSNQIARKAAERTAINAPMQGTAA 858 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 ++ DV N ++ +R R Sbjct: 859 DII---------------------KMAMVDVD------NWLSNSSLRAR----------- 880 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 M + VHDE+V E + ++ M + + Sbjct: 881 -----------MI----------MQVHDELVFEVHEDDVAALTEGVRFRMQHCAN--LDV 917 Query: 662 PLKAEGYEAKRY 673 PL + + Sbjct: 918 PLIVDVDTGASW 929 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 184/659 (27%), Gaps = 132/659 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + +D E + + + P +L+ +L DET H++ I K++ DI Sbjct: 331 ELLKFGL-YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DI 385 Query: 89 PSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPY 145 + T + + ++++ + + F Sbjct: 386 AIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQDDVSVYGKGKSFHIPEDGVLDK 445 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + L+ + E L L+ + G D+D Sbjct: 446 HIAS----ILDAIHVVQPQMMTILEAHEQTSLLS--EIELPLALILSEMEYIGIHTDIDT 499 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + +++ +I E +L E I + + L + LF + ++ ++ T Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L D IL S + L + + DGR+ A +TGR S Sbjct: 559 DVLEKLQNAHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSS 617 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + ++ AD Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRKAFKSTHEDYVILAADY 653 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA I G+ +AF + ED++ TT K FN D+V+ R K + Sbjct: 654 SQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNF---- 709 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQ+ + Sbjct: 710 ----------GIVYGISDYGLSQS------------------------------LGITRK 729 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + GV ++ + + RR + Sbjct: 730 EAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRG----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 + + + + +Q + DI+ M + Sbjct: 785 ------------FAERTAM------------------NSPIQGSAADIIKLAMVQFHREV 814 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P G + +M +PL E K + Sbjct: 815 QKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKTW 871 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 184/659 (27%), Gaps = 132/659 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + +D E + + + P +L+ +L DET H++ I K++ DI Sbjct: 331 ELLKFGL-YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DI 385 Query: 89 PSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPY 145 + T + + ++++ + + F D Sbjct: 386 AIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQDDVSVYGKGKSFHIPEDDILDK 445 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + L+ + E L L+ + G D+D Sbjct: 446 HIAS----ILDAIHVVQPQMMTILEAHEQTSLLS--EIELPLALILSEMEYIGIHTDIDT 499 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + +++ +I E +L E I + + L + LF + ++ ++ T Sbjct: 500 LKEMETVIQTELDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAV 558 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L D IL S + L + + DGR+ A +TGR S Sbjct: 559 DVLEKLQNAHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSS 617 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + ++ AD Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRKAFKSTHEDYVILAADY 653 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA I G+ +AF + ED++ TT K FN +V+ R K + Sbjct: 654 SQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNF---- 709 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQ+ + Sbjct: 710 ----------GIVYGISDYGLSQS------------------------------LGITRK 729 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + GV ++ + + RR + Sbjct: 730 EAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRG----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 + + + + +Q + DI+ M + Sbjct: 785 ------------FAERTAM------------------NSPIQGSAADIIKLAMVQFHREV 814 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P G + +M +PL E K + Sbjct: 815 QKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ--LDVPLSVESDYGKTW 871 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 101/663 (15%), Positives = 200/663 (30%), Gaps = 134/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + + R E + S L +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL--VNEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GID+ + + A + + + + KG S Sbjct: 384 WKGIDVRGVAF-DLLLAAYLLNPAQDAGDIAAV--AKMKQYEAVRSDEAV--YGKGVKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ ++ ++ L+ E+ L + + G +D Sbjct: 439 LPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ + +++ I + + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQT-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + +++ + + R +P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVRRYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + S +PLK + + Sbjct: 814 AARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVS---SVPLKVDYHYG 870 Query: 671 KRY 673 + Sbjct: 871 PTW 873 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 100/663 (15%), Positives = 197/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + R E + + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL--VNEHGRFSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + + R E + S L +L DET S+F+ + K Sbjct: 328 HDAPIVGIAL--VNEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 382 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 436 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 437 LPDEPTLAEHLVRKAAAIWALERPSLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVD 496 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 497 TKRLEQMGSELAEQLRAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 555 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQA-LTQTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 615 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 651 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 710 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 711 --------------GVVYGISDYGLAQN------------------------------LN 726 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R +P + R Sbjct: 727 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 782 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 783 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 811 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + A +PLK + + Sbjct: 812 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--ALRVPLKVDYHYG 869 Query: 671 KRY 673 + Sbjct: 870 PTW 872 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 105/689 (15%), Positives = 206/689 (29%), Gaps = 146/689 (21%) Query: 11 RSPQPLPKVGV----------WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 S + K+ + + I A+++ ++ V D + DL + Sbjct: 300 WSKVDIRKLITLLQDSRNIAFYPLIYEGEIKKIAFSFGEDTV-YIDVFQ----IEDLKEI 354 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLAL 116 E H + ++ GI+ ++I T+V+A S L L Sbjct: 355 FEKEEFEFTTHEIK-DFLVKLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLKKYL 412 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + GK + + + D + + LF K K+ Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKK 469 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L L + E L + + + G+ +D +++ +L + I ++ + I K + Sbjct: 470 L--LLEIEMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVN 526 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L +LF + ++ ++ T +L I+ + ++ Sbjct: 527 SPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYID 586 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + R+ + + TGR S QN+P Sbjct: 587 GFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIP---------------------- 623 Query: 354 ADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R I +G +V AD + IE RVLA ++G++ I++F N EDI++ Sbjct: 624 --IREEFGRQIRRAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLR 680 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T A+ F P++KV+ E R K + + G+ S Sbjct: 681 TAAEVFKVPMEKVTPEMRRAAKAVNFGII--------------YGISDYGLS-------- 718 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 K+ + + +++GV + + + Sbjct: 719 ----------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKEN 756 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 ++ RR ++ T SQ R Sbjct: 757 GYVTTIMN--------------------------RRRYIPEINSRNF---TQRSQAERLA 787 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG 645 +Q + DI+ M + ++L VHDE+V +T V Sbjct: 788 MNAP------IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVK 841 Query: 646 TL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + M +PL E + Sbjct: 842 KILKENMENVIK--LKVPLVVEIGIGPNW 868 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 186/654 (28%), Gaps = 134/654 (20%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D + D+ +MP +++ + DE + + N + I + GI + + S Sbjct: 368 DPYKIYYMDKELAESMPKEIVDLIEDEDIEKIGCNIKSDYINL-RPYGIRLGKIGF-DIS 425 Query: 98 VLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRA 150 + +S A + + GK D + Sbjct: 426 IAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGIM 485 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 N + +D + + L+ D E L + + G +D + +L Sbjct: 486 NTLSGVVPKMRQIIKDDDMEKLLY-------DVEIPLIEVLGDMEYIGIHVDKKTLDELG 538 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 L K L+ I ++ + L + LF + ++ ++ T +L Sbjct: 539 VLFNDRIKYLETKIYDISGEKF-NINSPKQLGLILFEKLELPVIKKTKTGYSTNAEVLEK 597 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 D+I + + ++ ++ DGR+ + A+ TGR S Sbjct: 598 LRDKHPIIDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIAT-TGRISSTDPN 656 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R +A G KLV AD + +E Sbjct: 657 MQNIP------------------------VRTDLGRQLRRVFVAGQGSKLVDADYSQVEL 692 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA ++G++ I+AF G DI+ T ++ F P D+VS E R+ K + + Sbjct: 693 RVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGII------ 746 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 A + + Sbjct: 747 --------------------------------------YGKSDFGLAKDLDISIAKAKEY 768 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + A+ + + R Sbjct: 769 IENYFARFPKIKGFMDHIVSDAEEKGYSTTIF--------------------------GR 802 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R ++K + +Q + DI+ M N Sbjct: 803 RRYIPEIKSSNFVEKNRGIRA---------AMNAPIQGSAADIIKIAMVNVHNRLEEEGL 853 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ E+P V L M + + L + + Sbjct: 854 KSNLILQVHDELIVESPIEEVERVRVLLKEEMENAVN--LKVNLDVDLNVGDSW 905 >gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1] gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1] Length = 887 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 89/666 (13%), Positives = 182/666 (27%), Gaps = 148/666 (22%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 A +D+ + + + L L DE + N F+ + LG Sbjct: 343 VGFALKINDQ----IYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I + + + + + ++ + + K I + KG + P Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDIEIYGKGKSEHVP- 448 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGY 199 + + + + L ++L E + + G Sbjct: 449 ----DDDEELFNHLASKVNAIENLKQPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGM 504 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 +++ +L+LQ A K+L++ I + G + L LF + ++ ++ Sbjct: 505 KVEASTLLELQNEFAVRLKELEDKIYQQA-GERFNLNSPKQLGHILFEKLNLPVIKKTKT 563 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L IL+ + + L + + DGR+ + Sbjct: 564 GYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R + Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPTEPDGY 658 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 + D + +E RVLA ++G+ +AF G DI+ T + F+ D+V+ R K Sbjct: 659 IFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKA 718 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L Sbjct: 719 VNFGIVY-----GISDYGLSKNL------------------------------------- 736 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + ++ + + + + Sbjct: 737 --GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH--------------- 779 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+ T S R + +Q + DI+ M Sbjct: 780 -----------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAM 819 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 N K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 820 INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADS 877 Query: 668 YEAKRY 673 + Sbjct: 878 GWGHNW 883 >gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] Length = 875 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 93/652 (14%), Positives = 185/652 (28%), Gaps = 133/652 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 + A + D + E +A L ++L D + + +S + K+ GI + Sbjct: 331 LLGMALS-DGTKTQYIPF-EIAAKSDILRRWLEDSSKIKYMSDSKASKAALKRA-GIQLA 387 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + N S + L + + GK + P Sbjct: 388 GVDF-DLVLASYINNPGLSGDDVATLARELGYYDVQADETVYGKGAKR--------AVPE 438 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A HV + +EA + ++ + E L + + G ++ Sbjct: 439 IDKLAQHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVNRAT 498 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + K+ + + + L+++I G + L + LF G+ ++ ++ T Sbjct: 499 LEKMGQELNDKLVVLEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAA 557 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + IL + L + + T + TGR S Sbjct: 558 DVLEKLKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQQALTATGRLSS 617 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + L AD Sbjct: 618 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSKEDWILFSADY 653 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++ + ++AF G D++ T F+ ++V R K + + Sbjct: 654 SQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIV- 712 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN+ + Sbjct: 713 -------------YGISDYGLSQNLD------------------------------ITRK 729 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + A GV Q D+ + ++ Sbjct: 730 EAATFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILN---------------------- 767 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 RR D+ L + + +Q + DI+ + M + Sbjct: 768 ----RRRYLPDITSSNFNLRSFAERT---------AMNTPIQGSAADIIKKAMIDMDARL 814 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 ++L VHDE++ E P + + +M +PLK + Sbjct: 815 KKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENAIE--LSVPLKVD 864 >gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05] gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05] Length = 887 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 89/667 (13%), Positives = 181/667 (27%), Gaps = 150/667 (22%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 A + + + + L L DE + N F+ + LG Sbjct: 343 VGFALKIN----YQIYVSRDVELLQETNLRHLLEDEQIKK---NV-FDLKRTMVGLHRLG 394 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I + + + + + ++ + + K I + KG + P Sbjct: 395 IHVHGQDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDIEIYGKGKSEHVP- 448 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGY 199 + + + + L ++L E + + G Sbjct: 449 ----DDDEELFNHLASKVNAIENLKQPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGM 504 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 +++ +L+LQ A K+L++ I + G + L LF + ++ ++ Sbjct: 505 KVEASTLLELQNEFAVRLKELEDKIYQQA-GERFNLNSPKQLGHILFEKLNLPVIKKTKT 563 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L IL+ + + L + + DGR+ + Sbjct: 564 GYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGK 374 TGR S QN+P +R + +G Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPTNPDGY 658 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 D + +E RVLA ++G+ +AF G DI+ T + F+ D+V+ R K Sbjct: 659 IF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAK 717 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + + Y L Sbjct: 718 AVNFGIVY-----GISDYGLSKNL------------------------------------ 736 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + + + + Sbjct: 737 ---GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH-------------- 779 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ T S R + +Q + DI+ Sbjct: 780 ------------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIA 818 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M N K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 819 MINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIAD 876 Query: 667 GYEAKRY 673 + Sbjct: 877 SGWGHNW 883 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + + R E + S L +L DET S+F+ + K Sbjct: 328 HDAPIVGIAL--VNEHGRFFLRAEMALADSQFLAWLADETKKK----SMFDAKRAAVALK 381 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 382 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 436 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 437 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVD 496 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 497 TKRLEQMGSELAEQLRAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 555 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQA-LTQTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 615 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 651 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 710 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 711 --------------GIVYGISDYGLAQN------------------------------LN 726 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R +P + R Sbjct: 727 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 782 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 783 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 811 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + A +PLK + + Sbjct: 812 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAV--ALRVPLKVDYHYG 869 Query: 671 KRY 673 + Sbjct: 870 PTW 872 >gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596] gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596] Length = 875 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 184/659 (27%), Gaps = 138/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 + + E + +++ + V ++ + LG + Sbjct: 333 IGLTIHSDKGTYFFAKETAENSPAFKEWIESDASKVV-----YDAKKAMIAMHRLGYAVS 387 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPY 145 + + + S+ + + +++E + GK + + Sbjct: 388 GITF-DIMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKR----STPEESVV 442 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A A + + D+E +L + D E L + + +G +D Sbjct: 443 APHLARKAVAIAILEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKR 498 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ +A K L+E I L + + L + LF G+ V ++ T Sbjct: 499 LEDMKVELAGRLKTLEESIHSLAEEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAA 557 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D IL + L + + T ++TGR S Sbjct: 558 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 617 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P +R + S G K+ AD Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSQPGWKIFSADY 653 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA I+ ++ I AF + DI+ T F+ ++V R K + Sbjct: 654 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF---- 709 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 710 ----------GIVYGISDYGLSQN------------------------------LGITRK 729 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + V + +D+ + RR + Sbjct: 730 DAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 + + +NT +Q + DI+ + M Sbjct: 785 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSDRL 814 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 815 KSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 100/663 (15%), Positives = 197/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + R E + + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL--VNEHGRFSLRAEMALADPQFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + + + + + R P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMETIVQEAKQKGYV--TTLLHRRRYFPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQAVE--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 100/670 (14%), Positives = 183/670 (27%), Gaps = 144/670 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ-----YLRDETVMCVAHNSLFERILF 80 + A D +P L D V H + + Sbjct: 344 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 399 Query: 81 KKTLG---IDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIA 133 LG + + +L+ +L + L Sbjct: 400 SLLLGGMKLTLQGAH-DDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 458 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + S + + + + L + D E L + Sbjct: 459 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR------DMELPLLPILAR 512 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + +G ++D + L + E + + I L + L L+ + + Sbjct: 513 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQLAQVLYEKLQLPI 571 Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T + +L IL + S L+TL V+ DGR+ T Sbjct: 572 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAKDGRIHTTYH 631 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A+ TGR S QN+P +R +A Sbjct: 632 QA-ATATGRLSSSDPNLQNIP------------------------VRTELGREIRRAFVA 666 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G +LV AD + +E R+LA IA + + AF + EDI+ T A+ F DKV ++QR Sbjct: 667 EAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRR 726 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 + K + GL S + Sbjct: 727 VAKTVNF--------------GIAYGLSPHGLSTRLS----------------------- 749 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + ++ G+ + +D E Sbjct: 750 -------ISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMF------------ 790 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR + +D+ + A + +Q + D++ Sbjct: 791 --------------GRRRLMADLNSKNRAVAQAAERAA---------INMPIQGTAADLI 827 Query: 611 CEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 + M + ++L VHDE++ E P+ V L M+ + +PL Sbjct: 828 KKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT--LKVPL 885 Query: 664 KAEGYEAKRY 673 K + K + Sbjct: 886 KVDVGAGKTW 895 >gi|307692866|ref|ZP_07635103.1| DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 185/635 (29%), Gaps = 131/635 (20%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTN---GLPSSL 109 +LQ L + V H + +K L GI+ R+ T + A L Sbjct: 376 QVLQALFAPDIQKVVHGAK----ELEKELMDQGIEPQGIRF-DTELAAYLLSPTDGSYDL 430 Query: 110 KNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + N K + A + Y Sbjct: 431 EKLGITYYNQEFAKAKEYLTPGAFDSLFSLDSEGQSAGPMGAFLSHCALIDALYETLSQR 490 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +L + E L + + G +D + E +AQ +K I +L Sbjct: 491 LEELKLTQLY--GEIELPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALIYELA 548 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + T L LF G+ V ++ T +L + IL+ + Sbjct: 549 GEEF-NINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGKHPIIEAILDYRQLT 607 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + ++ DGR+ T + TGR S QN+P Sbjct: 608 KLKSTYADGLGKVIAPDGRIH-TCFQNTVTATGRLSSTEPNLQNIP-------------- 652 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A+ GK LV AD + IE R+LA +AG+ I+ F +G Sbjct: 653 ----------IRTQLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEGFHSG 702 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T ++ F D+V+ + R K + + G+ SQ+ Sbjct: 703 ADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIV--------------YGISPFSLSQD 748 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + A + GV + Sbjct: 749 I------------------------------GVSVQQAKEYMDKYFAHYSGVRAYMDGVV 778 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E K+D ++ RR ++K + Sbjct: 779 EQ--------------------------GKQDGYVATLFGRRRWLPELKSSNFNTRSFGE 812 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDT 639 ++ +Q + DI+ M +VL VHDE++ E P+ Sbjct: 813 RV---------ALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECPEA 863 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +V L M +PL AE + + Sbjct: 864 EAETVCRLVKEEMEGVCQ--LSIPLLAETHAGTTW 896 >gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 887 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 87/666 (13%), Positives = 180/666 (27%), Gaps = 142/666 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82 A + +D+ + + + + L DE + N F+ + Sbjct: 340 ADFVGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAH 391 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 LGI + + + ++ + + K + + KG + Sbjct: 392 RLGIHTQGLDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDLEVYGKGKSEH 446 Query: 143 PPYDCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 P D + A + + + L E + + G Sbjct: 447 IPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTI--EIPTARVLARMEMNGM 504 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 +++ +++LQ A + K+L++ I + L LF G+ ++ ++ Sbjct: 505 KVEASTLIQLQNEFAVKLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPVIKKTKT 563 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L + IL+ + + L + + DGR+ + Sbjct: 564 GYSTSVEVLDQLKMQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R + Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGY 658 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 + D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K Sbjct: 659 IFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKA 718 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L Sbjct: 719 VNFGIVY-----GISDYGLSKNL------------------------------------- 736 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + ++ + + + Sbjct: 737 --GISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMH--------------- 779 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+ T + R + +Q + DI+ M Sbjct: 780 -----------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAM 819 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 N K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 820 INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADS 877 Query: 668 YEAKRY 673 + Sbjct: 878 GWGHNW 883 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 195/663 (29%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL-VNEHGRFFLRAEMALADP-QFVAWLADETKKK----SMFDAKRASVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG+ S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDVAAV--AKMKQYEAVRPDEAV--YGKGAKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ +R ++ L E+ L + + G ++D Sbjct: 439 LPDEPTLAEHLVRKAAAIWALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPGWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV + +++ + + Sbjct: 729 ITRKEAAEFIERYFASFPGVKRYMENIVQEAKQKGYVTTLLH------------------ 770 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ + + ++ +Q + DI+ + M + Sbjct: 771 --------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + +PLK + + Sbjct: 814 AARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVE--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988] gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561] gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161] gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818] gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818] Length = 875 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 87/637 (13%), Positives = 176/637 (27%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ + V ++ + +G+ I + + + S+ + Sbjct: 355 EAFRKWVESDQTKVV-----YDAKKTIVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + + A A + D+ Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDDL 464 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E +L + D E L + + +G +D D + ++ + K L+ I L Sbjct: 465 EKNEQLAL----MEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + V ++ T +L + D IL Sbjct: 521 AGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ ++V R K + G+ S Sbjct: 676 HDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 101/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + + R E + S L +L DET S+F+ + K Sbjct: 328 HDAPIVGIAL--VNEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 381 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG S Sbjct: 382 WKGIELRGVAF-DLLLAAYLLNPAQDAGDIAAV--AKMKQYEAVRSDEAV--YGKGVKRS 436 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ ++ ++ L+ E+ L + + G +D Sbjct: 437 LPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 496 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 497 TKRLEQMGSELAEQLRAIEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 555 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 556 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQA-LTQTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 615 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 651 AADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNF 710 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 711 --------------GIVYGISDYGLAQN------------------------------LN 726 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV Q +++ + + R +P + R Sbjct: 727 ITRKEAAEFIERYFASFPGVKQYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 782 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 783 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 811 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + + +PLK + + Sbjct: 812 AARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHYG 869 Query: 671 KRY 673 + Sbjct: 870 PTW 872 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 101/663 (15%), Positives = 201/663 (30%), Gaps = 133/663 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A +E + + R E + S L +L DET S+F+ + K Sbjct: 330 HDAPIVGIAL--VNEHGRFFMRPETALADSQFLAWLADETKKK----SMFDAKRAVVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + + + KG S Sbjct: 384 WKGIELRGVAF-DLLLAAYLLNPAQDAGDIAAV--AKMKQYEAVRSDEAV--YGKGVKRS 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + T A H+ ++ ++ L+ E+ L + + G +D Sbjct: 439 LPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L + IL+ + L + V D G++ ++TG Sbjct: 558 TSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQA-LTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 617 RLSSAEPNLQNIP------------------------IRLEEGRKIRQAFVPSEPDWLIF 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IA +D I+AF DI+ T F+ ++V+ R K + Sbjct: 653 AADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNF 712 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +QN Sbjct: 713 --------------GIVYGISDYGLAQN------------------------------LN 728 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV Q +++ + + R +P + R Sbjct: 729 ITRKEAAEFIERYFASFPGVKQYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFN-- 784 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ + M + Sbjct: 785 -------------VRSFAERTAMNT------------------PIQGSAADIIKKAMIDL 813 Query: 618 ------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 + ++L VHDE++ E P + L +M + + +PLK + + Sbjct: 814 AARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQAVT--LRVPLKVDYHYG 871 Query: 671 KRY 673 + Sbjct: 872 PTW 874 >gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S] Length = 875 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 87/637 (13%), Positives = 176/637 (27%), Gaps = 138/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ + V ++ + +G+ I + + + S+ + Sbjct: 355 EAFRKWVESDQTKVV-----YDAKKTIVAMNRIGLAISGITF-DIMLASYLLNPSDSIDD 408 Query: 112 ---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + +++E + GK + + A A + D+ Sbjct: 409 FTSVAVRHDYTEVETDEAVYGKGAKR----STPEESIVAAHLARKAVAIADLEKRLVDDL 464 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E +L + D E L + + +G +D D + ++ + K L+ I L Sbjct: 465 EKNEQLAL----MEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + V ++ T +L + D IL Sbjct: 521 AGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQL 579 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + + T ++TGR S QN+P Sbjct: 580 GKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------- 626 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 -----------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFK 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + DI+ T F+ ++V R K + G+ S Sbjct: 676 HDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF--------------GIVYGISDYGLS 721 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN + + + + V + +D Sbjct: 722 QN------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQD 751 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + RR + + + +NT Sbjct: 752 IVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT- 793 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETP 637 +Q + DI+ + M K ++L VHDE++ E P Sbjct: 794 -----------------PIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAP 836 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + +M +PLK + + Sbjct: 837 EAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262] gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262] Length = 875 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 90/659 (13%), Positives = 178/659 (27%), Gaps = 138/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 + E + + ++ + V ++ + +G I Sbjct: 333 IGLTVHSSQGTYFFTKETAEKSAVFRNWVESDETKVV-----YDAKKTMVAMNRIGFAIK 387 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145 + + + S+ + + +++E T GK + + Sbjct: 388 GVTF-DIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKR----STPEENIV 442 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A A + D E ++L + D E L + + +G +D Sbjct: 443 AAHLARKAVAIAELEKRLVDD----LEENEQLALMEDLELPLTFVLAQMEMQGVSVDTKR 498 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ +A K L+E I L + L + LF + V ++ T Sbjct: 499 LENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAA 557 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D IL + L + + T ++TGR S Sbjct: 558 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 617 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G K+ AD Sbjct: 618 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSKPGWKMFSADY 653 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA I+ ++ I AF + DI+ T F+ D+V R K + Sbjct: 654 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF---- 709 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 710 ----------GIVYGISDYGLSQN------------------------------LGITRK 729 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + V + +D+ + RR + Sbjct: 730 EAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 + + +NT +Q + DI+ + M Sbjct: 785 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSERL 814 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 815 KSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023] Length = 552 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 178/659 (27%), Gaps = 138/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 + E + + ++ E V ++ + +G I Sbjct: 10 IGLTVHSSQGTYFFTKETAEKSAVFRDWVESEETKVV-----YDAKKTMVAMNRIGFAIK 64 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145 + + + S+ + + +++E T GK + + Sbjct: 65 GVTF-DIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAIYGKGAKR----STPEEDIV 119 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A A + D+E +L + D E L + + +G +D Sbjct: 120 AAHLARKAVAIAELEKRLVDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTQR 175 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ +A K L+E I L + L + LF + V ++ T Sbjct: 176 LGNMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAA 234 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D IL + L + + T ++TGR S Sbjct: 235 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 294 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G K+ AD Sbjct: 295 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSKPGWKMFSADY 330 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA I+ ++ I AF + DI+ T F+ D+V R K + Sbjct: 331 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF---- 386 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 387 ----------GIVYGISDYGLSQN------------------------------LGITRK 406 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + V + +D+ + RR + Sbjct: 407 EAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 461 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 + + +NT +Q + DI+ + M Sbjct: 462 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSERL 491 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 492 KSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 548 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 103/679 (15%), Positives = 203/679 (29%), Gaps = 136/679 (20%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 Q + + + I A+++ V D + DL + E Sbjct: 271 TLLQDSRNIAFYPLIYEGEIKKIAFSFGSNTV-YIDIFQ----IEDLKEIFEKEEFEFTT 325 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKME 126 H + ++ GI+ ++I T+++A S L L + Sbjct: 326 HEIK-DFLVKLSYKGIECK-SKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEV 383 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 GK + + + D + + LF K K+L L + E Sbjct: 384 FGKGRDKKKLEEIREDVLADYICS---RCVHLFDLREKLMNFIEEMDMKKL--LLEIEMP 438 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + +++ G+ +D +++ +L + I ++ + I K + L +LF Sbjct: 439 LVEVLKSMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLF 497 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L I+ + ++ + + Sbjct: 498 EKLNLPVIKKTKTGYSTDSEVLEQLVPYNDVVSDIIEYRQLTKLKSTYIDGFLPLMDENN 557 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P Sbjct: 558 RVHSNFKQMV-TATGRISSTEPNLQNIP------------------------IREEFGRQ 592 Query: 364 VRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I +G +V AD + IE RVLA ++G++ I++F N EDI++ T A+ F P+ Sbjct: 593 IRRAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPM 651 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 +KV+ E R K + + G+ S Sbjct: 652 EKVTPEMRRAAKAVNFGII--------------YGISDYGLS------------------ 679 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 K+ + + +++GV + + + ++ Sbjct: 680 ------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMN-- 725 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 RR ++ T SQ R Sbjct: 726 ------------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------ 752 Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 +Q + DI+ M + ++L VHDE+V +T V + M Sbjct: 753 IQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELVVDTYKDEVDIVKKILKENMENV 812 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL E + Sbjct: 813 IK--LKVPLVVEIGIGPNW 829 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 97/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ ++ + ++L D+ + ++ + K GI+ Sbjct: 338 ADIQGFGIQNENG-CYFIP-SDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KGIE 394 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 395 IQGI-YFDLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQD 449 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G +D + + Sbjct: 450 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 508 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + +A K+++++I +L + L + LF + ++ ++ T Sbjct: 509 RSMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 567 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 568 VLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 626 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R I G + AD Sbjct: 627 TDPNLQNIP------------------------IRLEEGRKIRQAFIPSKEGWVMYAADY 662 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 663 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 721 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 722 -------------YGISDYGLSQN------------------------------LGITRK 738 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + A GV + ++ + S R +P + R Sbjct: 739 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL----- 791 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 792 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 823 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 824 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 880 >gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 886 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 91/663 (13%), Positives = 186/663 (28%), Gaps = 137/663 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82 A + +D+ ++ + + L L DE + N F+ + Sbjct: 340 ADFVGFSLKINDQ----IYVSKDVELLEEDNLKHLLEDEKIKK---NV-FDLKRTTVGLH 391 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 LGI + + + ++ + + K + + KG + Sbjct: 392 RLGIHAHGLDY-DMLLASYLVNNENNSNDLGEIAHL----YGDYSVKTDMEVYGKGKSEH 446 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P D NH+ + E K + + ++ E + + G +++ Sbjct: 447 IPDDDILFNHLASKVNAIEKLKEPLLKKLKEHEQDDLFDTIEIPTARVLAKMEMNGMKVE 506 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +++LQ A + K+L++ I + G + L LF G+ ++ ++ Sbjct: 507 ASTLIQLQNEFAVKLKELEDKIYEQA-GERFNLNSPKQLGHILFEKLGLPVLKKTKTGYS 565 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L IL+ + + L + + DGR+ + TGR Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATGR 624 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + + Sbjct: 625 LSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIFS 660 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K + Sbjct: 661 CDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNF 720 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + ++ + + + Sbjct: 737 ISRKRAKEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMH------------------ 778 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ T + R + +Q + DI+ M N Sbjct: 779 --------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMINM 821 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 822 QKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWG 879 Query: 671 KRY 673 + Sbjct: 880 HNW 882 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 112/660 (16%), Positives = 198/660 (30%), Gaps = 134/660 (20%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + I D P + D S S + DE ++ + + + +L K LGI Sbjct: 331 HSEIYKLGIKTTDTPTYIID--PDSDFVSKFKEIFEDEEIVKNSFDIKEDVVLLDK-LGI 387 Query: 87 DIPSKRWICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALI--ARFCKGSI 140 ++ + ++ S LK L++ GK Sbjct: 388 NLKL-PYDDMMLMHYLIDPSRSSYDLKVLSQSYLDYEVKSPVDLLGKGKKALKYQDLDFD 446 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + Y + N ++ K +E + + L + E L + + G+ Sbjct: 447 ELGNYLASGINAIED-------SKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFV 499 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 D ++ L+E I ++ K+ E+I +L + T L LF + ++ ++ Sbjct: 500 TDKKVLEDLKENIDKDIDKITEEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTG 558 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L I + L +A+ DGR+R T + A T Sbjct: 559 FSTNAQVLEKLRDKHQIIPKIERYRELFKLRSTYIEGLEKAIDEDGRIRSTFRQNIA-AT 617 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QNLP +R A GK L+ Sbjct: 618 GRLSSQDPNLQNLP------------------------IKTDEGRLIRKAFRAEEGKILI 653 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA ++G+ I AF G DI+ T +K F+T +DKV+K QR+ K + Sbjct: 654 DADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEAKAVNF 713 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L++ Sbjct: 714 GIIYG-----ISDYGLSQNLNIP------------------------------------- 731 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + A + + + + E Sbjct: 732 --RKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLFK------------------ 771 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-- 615 RR ++ + + ++ +Q + DI+ M Sbjct: 772 --------RRRYVPEINSRNFNVRSFGQRV---------ALNTPIQGTAADIIKIAMIET 814 Query: 616 --NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670 N K G IVL +HDEI+ E ++ + M +PL + Sbjct: 815 DKNLKKAGLDAKIVLQIHDEIILEADESSKDEAIKILRESMENATD--LEVPLIVDIDTG 872 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 97/655 (14%), Positives = 199/655 (30%), Gaps = 139/655 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86 I A A +E + RT+ + +L DET S+F+ I+ K GI Sbjct: 334 ILGFALA--NEHGHFFIRTDTALSSPLFTAWLEDETKKK----SVFDGKRAIVALKWKGI 387 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSIDS 142 ++ + + + S ++ + + GK + Sbjct: 388 ELRGIEF-DLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAVYGKGAKQ--------T 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ +++ + ++ +D E L + + G ++D Sbjct: 439 VPEEKALAEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ + ++ E + ++ + ++++I +L + L + LF + ++ ++ Sbjct: 499 VERLKEMGEELTEQLRAVEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D T+ ++TGR Sbjct: 558 TSADVLEKLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGR 617 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + + Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSKPDWVIFS 653 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA ++ I AF + DI+ T F+ D+V+ R K + Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFG 713 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 714 IV--------------YGISDYGLSQN------------------------------LNI 729 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + GV Q +++ + + R +P + R Sbjct: 730 PRKEAAEFIRRYFEIFPGVKQYMENIVQEAKQKGYV--TTLLHRRRYLPDITSRNFNL-- 785 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 + + +NT +Q + DI+ + M + Sbjct: 786 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDLA 814 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 K ++L VHDE++ E P + + +M +PL + Sbjct: 815 DRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENAIQ--LKVPLLID 867 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 184/662 (27%), Gaps = 147/662 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A I A A E+ + SD+ +L VA F+ L Sbjct: 408 AEIRGMAVATPK-RAYYVRFGERLEL-SDVRPWLV-SDRPKVA----FDLKSMAFALDAH 460 Query: 85 GIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 GI + W + A G+ L A + Sbjct: 461 GIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARER-------GQELPAW--EEGEREK 511 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 T + ++ Y R E L++ + E L + + G+ ++ Sbjct: 512 WLAYTASQLPPLFESLA-YTIRMQEME-RLYQ------EVELPLAFVLAKMEITGFYVNR 563 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + ++ + + + K++ ++I L G + L LF G+ + ++ T Sbjct: 564 EKLVAFGQELTERIKRITQEIYDLA-GTSFNLNSPKQLGEILFDKLGLPALKKTKTGYST 622 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +L IL+ + + L + + GR+ + TGR Sbjct: 623 SADVLEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQT-LTATGR 681 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R + + Sbjct: 682 LSSSEPNLQNIP------------------------IRLEEGRRLRQVFEPTYKDWVIFA 717 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA ++G++ I AF DI+ T A F P ++V+ R K + Sbjct: 718 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 776 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ +QN+ + Sbjct: 777 -------------GIVYGISDFGLAQNL------------------------------NI 793 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++ K GV + ++ + ++ Sbjct: 794 PQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMN------------------- 834 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR D+ S R +Q + D++ M Sbjct: 835 -------RRRYLPDIHSRN---YQLRSFAERTAM------NTPIQGSAADLIKLAMVRID 878 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P ++ L M + +PLK + Sbjct: 879 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 936 Query: 672 RY 673 + Sbjct: 937 TW 938 >gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] Length = 567 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 203/573 (35%), Positives = 276/573 (48%), Gaps = 58/573 (10%) Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL Sbjct: 1 MDWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIG 60 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + + L LT G ++++ Q AL +L G+ L DM + T++ L + Sbjct: 61 AVERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLP 120 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 332 RQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 R S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWIAGEDWKIKAFANGEDI---------------------------------------- 408 LAW+AGE K+ AF + + Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +A W + AC++ K+AWR H + WK L Sbjct: 361 PPLLLQ--EAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583 ++ + + M+ + + + LPS R L Y+ + G SY+ T Sbjct: 419 TDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 T + R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAF 533 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L +LM P WA+GLPL AEG++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC] gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC] Length = 887 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 87/666 (13%), Positives = 179/666 (26%), Gaps = 142/666 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82 A + +D+ + + + + L DE + N F+ + Sbjct: 340 ADFVGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAH 391 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 LGI + + + ++ + + K + + KG + Sbjct: 392 RLGIHTHGLDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDLEVYGKGKSEH 446 Query: 143 PPYDCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 P D + A + + + L E + + G Sbjct: 447 IPDDDDELFNHLASKVNAIEKLKPELLKKLKEHEQDALFDTI--EIPTARVLARMEMNGM 504 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 +++ +++LQ + K+L++ I G + L LF G+ ++ ++ Sbjct: 505 KVEASTLIQLQNEFTVKLKELEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKT 563 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L IL+ + + L + + DGR+ + Sbjct: 564 GYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTA 622 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R + Sbjct: 623 TGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGY 658 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 + D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K Sbjct: 659 IFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKA 718 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L Sbjct: 719 VNFGIVY-----GISDYGLSKNL------------------------------------- 736 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + ++ + + + Sbjct: 737 --GISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMH--------------- 779 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+ T + R + +Q + DI+ M Sbjct: 780 -----------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAM 819 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 N K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 820 INMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADS 877 Query: 668 YEAKRY 673 + Sbjct: 878 GWGHNW 883 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 97/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ ++ + ++L D+ + ++ + K GI+ Sbjct: 331 ADIQGFGIQNENG-CYFIP-SDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KGIE 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 388 IQGI-YFDLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQD 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G +D + + Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + +A K+++++I +L + L + LF + ++ ++ T Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R I G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFIPSKEGWVMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + A GV + ++ + S R +P + R Sbjct: 732 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873 >gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 875 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 97/698 (13%), Positives = 193/698 (27%), Gaps = 147/698 (21%) Query: 1 MSKLFID--IETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAM 53 + +L D E K ++ E D + + Sbjct: 296 LKELTFDVLTELTEKHFSGKTALYVELENENYHTGNFIGLTIHSDKG-TYFFTKETAENS 354 Query: 54 PSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 P+ +++ + V ++ + LG + + + + S+ Sbjct: 355 PA-FKEWIESDASKVV-----YDAKKTMVAMHRLGYAVSGITF-DIMLASYLLNPSDSIA 407 Query: 111 N---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + + +++E + GK + + A A + + D Sbjct: 408 DFTSVAIRHDYTEVETDEAVYGKGAKR----STPEERVVAPHLARKAVAIAVLEKRLLDD 463 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +E +L + D E L + + +G +D + ++ +A K L+E I Sbjct: 464 LEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHS 519 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L + LF G+ V ++ T +L + D IL Sbjct: 520 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 578 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + + T ++TGR S QN+P Sbjct: 579 LGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP------------ 626 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G K+ AD + +E RVLA I+ ++ I AF Sbjct: 627 ------------IRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAF 674 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T F+ ++V R K + G+ Sbjct: 675 KHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF--------------GIVYGISDYGL 720 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 SQN + + + + V + + Sbjct: 721 SQN------------------------------LGITRKDAKDFIDRYFVSYPAVKEYMQ 750 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ + RR + + + +NT Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT 793 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSET 636 +Q + DI+ + M K ++L VHDE++ E Sbjct: 794 ------------------PIQGSAADIIKKAMILMSDRLKSEKLEAKLLLQVHDELIFEA 835 Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ + + +M +PLK + + Sbjct: 836 PEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378] Length = 552 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 88/635 (13%), Positives = 174/635 (27%), Gaps = 138/635 (21%) Query: 57 LLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN-- 111 ++ + V ++ + +G I + + + S+ + Sbjct: 34 FRNWVESDETKVV-----YDAKKTMVAMNRIGFAIKGVTF-DIMLASYLLNPSDSIDDFT 87 Query: 112 -ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + +++E + GK + + A A + D+E Sbjct: 88 SVAVRHDYTEVETDEAIYGKGAKR----STPEENIVAAHLARKAVAIAELEKRLVDDLEK 143 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +L + D E L + + +G +D + ++ +A K L+E I L Sbjct: 144 NEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAG 199 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + L + LF + V ++ T +L + D IL Sbjct: 200 EEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGK 258 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + + T ++TGR S QN+P Sbjct: 259 IQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP--------------- 303 Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + G K+ AD + +E RVLA I+ ++ I AF + Sbjct: 304 ---------IRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHD 354 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T F+ D+V R K + G+ SQN Sbjct: 355 YDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNF--------------GIVYGISDYGLSQN 400 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + V + +D+ Sbjct: 401 ------------------------------LGITRKEAKDFIDRYFVSYPAVKEYMQDIV 430 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + RR + + + +NT Sbjct: 431 RFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT--- 470 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639 +Q + DI+ + M ++L VHDE++ E P+ Sbjct: 471 ---------------PIQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEA 515 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +M +PLK + + Sbjct: 516 EIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 548 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 103/691 (14%), Positives = 206/691 (29%), Gaps = 146/691 (21%) Query: 9 ETRSPQPLPKVGV----------WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 E S + ++ + + I A+++ + V D + DL Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQTE----DLK 352 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACL 114 + E H + ++ GI+ ++I T+V+A S L Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLKK 410 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + GK + + ++ D + + LF K Sbjct: 411 YLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICS---RCVYLFDLKEKLMNFIEEMDM 467 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K+L L + E L + +++ G+ +D +++ +L + I ++ + I K + Sbjct: 468 KKL--LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQF-N 524 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L +LF + ++ ++ T +L I+ + Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQLTKLKSTY 584 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ + + R+ + + TGR S QN+P Sbjct: 585 IDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIP-------------------- 623 Query: 352 TIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G +V AD + IE RVLA ++G++ I++F N EDI+ Sbjct: 624 ----IREEFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + T ++ F P++KV+ E R K + + G+ S Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGII--------------YGISDYGLS------ 718 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 K+ + + +++GV + + Sbjct: 719 ------------------------RDLKISRKEAKEYINNYFERYKGVKDYIEKIVRFAK 754 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 ++ RR ++ T SQ R Sbjct: 755 ENGYVTTIMN--------------------------RRRYIPEINSRNF---TQRSQAER 785 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M ++L VHDE+V +T Sbjct: 786 LAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDI 839 Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M +PL E + Sbjct: 840 IKKILKENMENVVQ--LKVPLVVEIGVGPNW 868 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 103/691 (14%), Positives = 207/691 (29%), Gaps = 146/691 (21%) Query: 9 ETRSPQPLPKVGV----------WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 E S + ++ + + I A+++ + V D + DL Sbjct: 298 EKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTV-YIDVFQTE----DLK 352 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACL 114 + E H + ++ GI+ ++I T+V+A S L Sbjct: 353 EIFEKEDFEFTTHEIK-DFLVRLSYKGIECK-SKYIDTAVMAYLLNPSESNYDLDRVLKK 410 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + GK + + ++ D + + LF K Sbjct: 411 YLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICS---RCVYLFDLKEKLMNFIEEMDM 467 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K+L L + E L + +++ G+ +D +++ +L + I ++ + I K + Sbjct: 468 KKL--LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQF-N 524 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L +LF + ++ ++ T +L I+ + Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQLTKLKSTY 584 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ + + R+ + + TGR S QN+P Sbjct: 585 IDGFLPLMDENNRVHSNFKQMV-TATGRISSTEPNLQNIP-------------------- 623 Query: 352 TIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G +V AD + IE RVLA ++G++ I++F N EDI+ Sbjct: 624 ----IREEFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + T ++ F P++KV+ E R K + + G+ S Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGII--------------YGISDYGLS------ 718 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 K+ + + +++GV + + + Sbjct: 719 ------------------------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAK 754 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 ++ RR ++ T SQ R Sbjct: 755 ENGYVTTIMN--------------------------RRRYIPEINSRNF---TQRSQAER 785 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M ++L VHDE+V +T Sbjct: 786 LAMNAP------IQGSAADIIKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDI 839 Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M +PL E + Sbjct: 840 IKKILKENMENVVQ--LKVPLVVEIGVGPNW 868 >gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] Length = 875 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 85/635 (13%), Positives = 175/635 (27%), Gaps = 138/635 (21%) Query: 57 LLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN-- 111 +++ V ++ + +G I + + + S+ + Sbjct: 357 FREWVESAQTKVV-----YDAKKTMVAMNRMGFAISGITF-DIMLASYLLNPSDSIDDFT 410 Query: 112 -ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + +++E + GK + SI + + + + Sbjct: 411 SVAVRHDYTEVETDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVD-------- 462 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++L + D E L + + +G +D + + ++ +A K L+ I L Sbjct: 463 DLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLAG 522 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + L + LF + V ++ T +L + D IL Sbjct: 523 EEF-NINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHDIIDEILLYRQLGK 581 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + + T ++TGR S QN+P Sbjct: 582 IQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIP--------------- 626 Query: 347 LNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + G K+ AD + +E RVLA I+ ++ I AF + Sbjct: 627 ---------IRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHD 677 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T F+ ++V R K + G+ SQN Sbjct: 678 YDIHTKTAMDVFHVEQEEVDSLMRRQAKAVN--------------FGIVYGISDYGLSQN 723 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + V + D+ Sbjct: 724 ------------------------------LGITRKDAKDFIDRYFVSYPAVKEYMHDIV 753 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + RR + + + +NT Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRG-----------------FAERTAMNT--- 793 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT 639 +Q + DI+ + M + ++L VHDE++ E P+ Sbjct: 794 ---------------PIQGSAADIIKKAMILMSERLESEQLEAKLLLQVHDELIFEAPEA 838 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +M +PLK + + Sbjct: 839 EIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 871 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 188/664 (28%), Gaps = 135/664 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 QA I A + +++ +DET ++ ++ Sbjct: 327 HQADIAGFALVHEKGR-YFIPTETALR-SDLFVEWAKDETKKKWLLDAKRGVVVLGW-KD 383 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF----CKGSID 141 + + + + + S + +G I KG+ Sbjct: 384 VLLDGVDF-DLLMASYLLDPSHSSHDLS--------DIATRKGAKSIQADEAVYGKGAKR 434 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P A H+ K +E + ++ D E L ++ + G ++ Sbjct: 435 KVPETDVLAEHLVRKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKV 494 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D+D + + E +A +L++ I + G+ + L LF G+ ++ ++ Sbjct: 495 DIDQLKAMGEDLASRLAELEKHIHEHA-GVSFNINSPKQLGEVLFEKLGLPVIKKTKTGY 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 T +L IL+ + L + ++ ++T Sbjct: 554 STSADVLEKLAEDHEIIRHILHYRQLGKLNSTYIEGLVKVTHKGTSKIHTRFNQA-LTQT 612 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S QN+P +R I G K+ Sbjct: 613 GRLSSTDPNLQNIP------------------------IRLEEGRKIRKAFIPSEEGWKI 648 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE RVLA IA ++ I AF D++ T F+ + V+ R K + Sbjct: 649 LAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEEDVTSMMRRSAKAVN 708 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + G+ SQ+ Sbjct: 709 FGIV--------------YGISDYGLSQS------------------------------L 724 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + A + V + + + E S R +P L R + Sbjct: 725 GITRKEAAKFIERYLASYPNVAEYMERIIEEARENGYV--STLLNRRRYLPELTSRNFNQ 782 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + + +NT +Q + DI+ + M Sbjct: 783 ---------------RSFAERTAMNT------------------PIQGTAADIIKKAMVE 809 Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + + +M A +PLK + Sbjct: 810 MALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENAVELA--VPLKVDISA 867 Query: 670 AKRY 673 + Sbjct: 868 GDTW 871 >gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] Length = 950 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 97/660 (14%), Positives = 182/660 (27%), Gaps = 145/660 (21%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 ++ W + S L L + + + HN F L K+ I + Sbjct: 408 NNNDTYQWYLNLTE-VLSILKPILENIKIKKIGHNMKFIFSLLKQH-NIHLSG-PIFDVI 464 Query: 98 VLARTNGLPSSLKNACLALNFSEH------------LTKMEEGKALIARFCKGSIDSPPY 145 + S+ +N LN + K K + + S + Sbjct: 465 LELYVLYGTSNYQNIKRFLNKTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCSTQLI 524 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H W ++ + + E L + I D G ID Sbjct: 525 YAISNLHQILWTEIKQHNELKKI-----------FINIEIPLISVLSRIEDYGVLIDKKF 573 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTL 261 + + + L +LT G + L+ L+ + + + T Sbjct: 574 LYSHSIKLNSQLNNLKTQAYQLT-GSSFNLDSPKQLQEILYNQEKLPIFKKTPHGAPSTS 632 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +L + +IL + S N L ++ R+ + + TGR Sbjct: 633 EEVLKKLSKKHSIPKIILKYRSLSKLKSTYTNKLISMINKKSNRIHTSYNQT-RTSTGRL 691 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R IA ++ AD Sbjct: 692 SSTNPNLQNIP------------------------NRNYDGRKIRQAFIAPENSLIISAD 727 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + I F +DI+ TT ++ F T + V+ EQR K + L Sbjct: 728 YSQIELRIMAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLI 787 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y L + Sbjct: 788 YGMT-----AFGLSKQLS---------------------------------------VTC 803 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + ++ GV+Q + + + + Sbjct: 804 QEAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGY--------------------------V 837 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617 R+L D+ R +Q + DI+ M + Sbjct: 838 STLDGRKLYLPDIYSSNISQK---KGAERSAINAP------MQGSAADIIKRAMISIDSW 888 Query: 618 ---TKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ VHDE+V E +T +V + LM + + +PLK + K + Sbjct: 889 LQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQIRKLMEEC--FILNVPLKVDIGVGKNW 946 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 101/659 (15%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I D+ T+ + +++L+DE + ++ + K G++ Sbjct: 331 ADIQGFGIQNDNG-CYFIP-TDIALASEAFIKWLKDEEMRKYTFDAKRAIVALKW-KGVE 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 388 IRGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPAQE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ + E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + +A K+++++I +L + L + LF + ++ ++ T Sbjct: 502 RNMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVVLFEKLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPKILHYRQLGKLNSTYIEGLLKVVHDESSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P +R I S G + AD Sbjct: 620 TEPNLQNIP------------------------IRLEEGRKIRQAFIPSQEGWVMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + I+AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + A GV + ++ + S R +P + R Sbjct: 732 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFN------ 783 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 784 ---------VRSFAERTAMNT------------------PIQGSAADIIKKAMIVMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 98/652 (15%), Positives = 190/652 (29%), Gaps = 146/652 (22%) Query: 38 DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 ++ + D + + + L ++ D+TV V H+S K IDI Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY-DIDIQGFD 404 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + T++ A + E LI RF DC Sbjct: 405 F-DTAIAAYLIDSSKA----------------NYEVFDLINRFL---EKDIKSDCDDLKA 444 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + L Y K +E L E L + ++ G++I+ D + +L+ Sbjct: 445 ICSSYLTKLYEKLKERLHKEDMDELY--YKVEHPLIYVLSSMESIGFKINKDKLEELRIK 502 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 ++ +K +++I +L D + L LF + ++ ++ T + +L Sbjct: 503 FKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 ++ + + L + DG + + TGR S QN Sbjct: 562 DKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTV-TTTGRLSSTEPNLQN 620 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARV 388 +P +R I + L+ D + IE RV Sbjct: 621 IP------------------------IKYEMGKEIRKVFIPQDSDDILISCDYSQIELRV 656 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA +A + I AF + DI+ T ++ F P+D+V+ R+ K + + Y Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYG-----I 711 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + L + + FE + + + + ++ + E ++ Sbjct: 712 SDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNR------- 764 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R + K + Sbjct: 765 --RRFIPEIKSSNKIV-------------------------------------------- 778 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 G+ +N Q + DI+ M N Sbjct: 779 ---KALGERLAMNAPI------------------QGSAADIIKLAMVNVYNKLREKNLNS 817 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ + V L M K + L + + Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 98/652 (15%), Positives = 189/652 (28%), Gaps = 146/652 (22%) Query: 38 DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 ++ + D + + + L ++ DETV V H+S K IDI Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + T++ A + E LI RF D Sbjct: 405 F-DTAIAAYLIDSSKA----------------NYEVFDLINRFL---EKDIKSDSNDLKA 444 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + L Y K +E L E L + ++ G++I+ D + +L+ Sbjct: 445 ICSSYLKKLYEKLKEMLHKEDMDELY--YKVEHPLIYVLSSMESIGFKINQDKLEELRVK 502 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 ++ +K +++I +L D + L LF + ++ ++ T + +L Sbjct: 503 FKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 ++ + + L + DG + + TGR S QN Sbjct: 562 DKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTV-TTTGRLSSTEPNLQN 620 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARV 388 +P +R I + L+ D + IE RV Sbjct: 621 IP------------------------IKYEMGKEIRKVFIPQDSDDILISCDYSQIELRV 656 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA +A + I AF + DI+ T ++ F P+D+V+ R+ K + + Y Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYG-----I 711 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + L + + FE + + + + ++ + E ++ Sbjct: 712 SDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNR------- 764 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R + K + Sbjct: 765 --RRFIPEIKSSNKIV-------------------------------------------- 778 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 G+ +N Q + DI+ M N Sbjct: 779 ---KALGERLAMNAPI------------------QGSAADIIKLAMVNVYNKLREKNLNS 817 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ + V L M K + L + + Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 98/652 (15%), Positives = 189/652 (28%), Gaps = 146/652 (22%) Query: 38 DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 ++ + D + + + L ++ DETV V H+S K IDI Sbjct: 346 EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY-DIDIQGFD 404 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + T++ A + E LI RF D Sbjct: 405 F-DTAIAAYLIDSSKA----------------NYEVFDLINRFL---EKDIKSDSNDLKA 444 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + L Y K +E L E L + ++ G++I+ D + +L+ Sbjct: 445 ICSSYLKKLYEKLKEMLHKEDMDELY--YKVEHPLIYVLSSMESIGFKINKDKLEELRVK 502 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 ++ +K +++I +L D + L LF + ++ ++ T + +L Sbjct: 503 FKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLI 561 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 ++ + + L + DG + + TGR S QN Sbjct: 562 DKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFNQTV-TTTGRLSSTEPNLQN 620 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARV 388 +P +R I + L+ D + IE RV Sbjct: 621 IP------------------------IKYEMGKEIRKVFIPQDSDDILISCDYSQIELRV 656 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA +A + I AF + DI+ T ++ F P+D+V+ R+ K + + Y Sbjct: 657 LAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFGIVYG-----I 711 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + L + + FE + + + + ++ + E ++ Sbjct: 712 SDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNR------- 764 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R + K + Sbjct: 765 --RRFIPEIKSSNKIV-------------------------------------------- 778 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 G+ +N Q + DI+ M N Sbjct: 779 ---KALGERLAMNAPI------------------QGSAADIIKLAMVNVYNKLREKNLNS 817 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ + V L M K + L + + Sbjct: 818 ELILQVHDELILNVKKDEFDIVKQLVIEEMEKAIK--LNVALDVDLKYGYTW 867 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 90/674 (13%), Positives = 185/674 (27%), Gaps = 134/674 (19%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75 + +G + + D + + L + + ++ Sbjct: 323 IDVIGKEGNILDKRVLYVFLSLDGNEIYYV----NEDELPQIKTLLSNPEIKKHGYDLKE 378 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKA 130 + + K I++ S + T + SS C L + GK Sbjct: 379 DY-ILLKPYEIELNSMDFDIT-IAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKG 436 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 A+ ++ + ++ E + E L + Sbjct: 437 AKAKKFDEIEFDELSAYIGDILNTVNGVYLKMEEKLKETEMDGLFY-----HVEMPLVEV 491 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 ++ G ++D D + +L+E +L+ +I +L + L + LF G Sbjct: 492 LGSMEYIGMKVDKDQLNELKEKFTTIINELENEIFELAGEPF-NINSPKQLGVVLFEKLG 550 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 + ++ ++ T +L D I + L + ++ GR+ Sbjct: 551 LPVIKKTKTGYSTNAEVLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIH 610 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 + + TGR S QN+P +R Sbjct: 611 SSFNQT-ITTTGRISSTEPNMQNIP------------------------VKTEMGRDIRK 645 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 +A KLV AD + +E RVLA ++G++ I AF +GEDI+ T ++ F+ I V+ Sbjct: 646 VFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTS 705 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 +QR K + + Sbjct: 706 KQRIEAKAINFGII--------------------------------------------YG 721 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + ++ K+ + + + E ++ Sbjct: 722 KTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEFMDEAVESATETGYATTILN------- 774 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR ++K + + +Q + Sbjct: 775 -------------------RRRYIPEIKASNFIVRNQGKRF---------AMNAPIQGSA 806 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 DI+ M N ++L VHDE++ E D + M S Sbjct: 807 ADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEMENAQS--M 864 Query: 660 GLPLKAEGYEAKRY 673 + L + + Sbjct: 865 DVKLDVDLNTGDSW 878 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 92/580 (15%), Positives = 160/580 (27%), Gaps = 125/580 (21%) Query: 91 KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 R+ V A L K GK L + D Sbjct: 416 GRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGK-LDFTQMMKEDEKKAVD 474 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 C AW+ ++ E L D E L + + + G R D + Sbjct: 475 CACYEVYTAWKSKPVLLQKLKEMNM-----LTLYRDIELPLVFVLYDMENEGIRADGIKL 529 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + +A +L++ I + + L + LF G+ ++ T Sbjct: 530 KEYGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTKTGYSTAAD 588 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + LS ++SDG++ TL + TGR S Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQT-ITATGRLSST 647 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + G V +D + Sbjct: 648 EPNLQNIP------------------------IRIELGKLIRKVFLPEEGDLFVDSDYSQ 683 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++G++ I+AF NG+DI+ +T + F+TP D+V+ QR K + + Y Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYG- 742 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + S F + + + + + G Sbjct: 743 ----ISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIR 798 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + Sbjct: 799 PI---------PELNSSNFMQRQ------------------------------------- 812 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 G+ +N+ + DI+ M Sbjct: 813 ----------FGERVAMNSPIQG------------------TAADIIKIAMIRVHDRLLD 844 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656 ++L VHDE++ ET + V L M Sbjct: 845 EGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAVD 884 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 90/662 (13%), Positives = 187/662 (28%), Gaps = 133/662 (20%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 I + + + E + ++ DE + +++ + ++ G+ Sbjct: 328 NGEIVGISMR--NGSGNYFFTLETALASDAFKKWAADEKMKKSVYDAKRSIVALRRQ-GV 384 Query: 87 DIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDS 142 ++ + +++ S + S + GK + + + Sbjct: 385 ELTGVEF-DLLIVSYILNPAESADDFAGVAKKHGASVIESDEAVYGKGAKRKVPEEEKLA 443 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + E K + + +D E L ++ + G +D Sbjct: 444 EHLARKANVVYELKSTCEEALKENDQYQL--------FTDLELPLAIILADMEYTGVGVD 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +D + +++ +A+ ++++ I +L + L + LF + ++ ++ Sbjct: 496 VDRLKEMKSELAERLDEMEKKIYELAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYS 554 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L D IL+ + L + + D T ++TGR Sbjct: 555 TSADVLEKLQSKHEIIDHILHYRQLGKLQSTYIEGLLKVIHEDSNKVHTRFNQALTQTGR 614 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378 S QN+P +R I S + Sbjct: 615 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFIPSEKNWLMFA 650 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IAG++ I AF G DI+ T F+ D V+ R K + Sbjct: 651 ADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNFG 710 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQ+ + Sbjct: 711 IV--------------YGISDFGLSQS------------------------------LGI 726 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + GV + D+ + RR Sbjct: 727 TRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQNGFVKTLLQRRRYIPEITSRNFNL---- 782 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 783 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDMA 811 Query: 616 -NATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E P+ + + +M +PLK + Sbjct: 812 ARLEKENLQTRLLLQVHDELIFEAPEDEIERLKEIVPEVMENAVE--LEVPLKVDYSYGP 869 Query: 672 RY 673 + Sbjct: 870 TW 871 >gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118] Length = 886 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 87/663 (13%), Positives = 179/663 (26%), Gaps = 142/663 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + +D+ + + + + L DE + N F+ + LG Sbjct: 342 VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLG 393 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I + + + ++ + + K + + KG + P Sbjct: 394 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHL----YGDYSVKTDLEVYGKGKSEHIPD 448 Query: 146 DCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 D + A + + + L E + + G +++ Sbjct: 449 DDDELFNHLASKVNAIEKLKRELLKKLKEHEQDALFDTI--EIPTACVLARMEMNGMKVE 506 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +++LQ A + K+L++ I G + L LF G+ ++ ++ Sbjct: 507 ASTLIQLQNEFAVKLKELEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGYS 565 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L IL+ + + L + + DGR+ + TGR Sbjct: 566 TSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATGR 624 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + + Sbjct: 625 LSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIFS 660 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K + Sbjct: 661 CDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNF 720 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + ++ + + + Sbjct: 737 ISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMH------------------ 778 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ T + R + +Q + DI+ M N Sbjct: 779 --------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMINM 821 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 822 QKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGWG 879 Query: 671 KRY 673 + Sbjct: 880 HNW 882 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 97/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ ++ + ++L D+ + ++ + K GI+ Sbjct: 331 ADIQGFGIQNENG-CYFIP-SDVALKSEAFKKWLADDEMRKYTFDAKRAIVALKW-KGIE 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 388 IQGIDF-DLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPAQD 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G +D + + Sbjct: 443 IVAEH-VARKVHVLYDVQKTFVEELQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + +A K+++++I +L + L + LF + ++ ++ T Sbjct: 502 RSMGDELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMEHHEIIPKILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R I G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFIPSKEGWVMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + A GV + ++ + S R +P + R Sbjct: 732 AAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPTW 873 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 92/668 (13%), Positives = 186/668 (27%), Gaps = 146/668 (21%) Query: 28 AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81 A + +D + + D E+ + L DE + N F+ + Sbjct: 340 ADFVGFSLKIND-KIYVSRDVDLLEEDNI----KHILEDEKIKK---NV-FDLKRSMVGA 390 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCK 137 LGI + + + ++ + ++S GK Sbjct: 391 HRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPD 449 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + ++ N +++ + +D E L E + + Sbjct: 450 DDDELFNHLASKVNAIESLKKTLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMN 502 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +++ +++LQ A + KKL++ I G + L LF G+ ++ + Sbjct: 503 GMKVETSTLIQLQNEFAVKLKKLEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKT 561 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L IL+ + + L + + DGR+ Sbjct: 562 KTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-L 620 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNG 373 + TGR S QN+P +R + Sbjct: 621 TATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPD 656 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIG 432 + D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R Sbjct: 657 GYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHA 716 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + G+ S+N Sbjct: 717 KAVNF--------------GIVYGISDYGLSKN--------------------------- 735 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + ++ + + + Sbjct: 736 ---LGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMH------------- 779 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR D+ T + R + +Q + DI+ Sbjct: 780 -------------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKI 817 Query: 613 GMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665 M N K +V+ VHDE++ + P ++ + +M +PL A Sbjct: 818 AMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIA 875 Query: 666 EGYEAKRY 673 + + Sbjct: 876 DSGWGHNW 883 >gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3] gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3] Length = 656 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 169/705 (23%), Positives = 272/705 (38%), Gaps = 84/705 (11%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60 LF+D ET S L + G+ Y + + + D E +P + ++ Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEVGQRVPEVITRH 63 Query: 61 LRDETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNA 112 +R + VAHN+ F+ + ++ G ++ + C++ AR NGLP SL A Sbjct: 64 VR-AGHLFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 122 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C AL K EG A++ K +P D T A+H + + +Y D +A Sbjct: 123 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVG 174 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG + Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 235 LAVSEVEKIKTYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQAL 347 L V GRL+ + ++GA GR + PR + + A Sbjct: 294 AILRAHVG--GRLQHSTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 350 Query: 348 NRGETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 R + + R A G LV ADL+GIEAR WIAG+ + Sbjct: 351 LRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELL 410 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G D Y A F + V+K+QR IGKV LAL Y GGA F +MA++ G+ L Sbjct: 411 EAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHL 470 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + WRA + Sbjct: 471 PPEQ---------------------------------------VDEIVLNWRAARPAFER 491 Query: 520 LWKDLTEGFACVVQ--EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574 W + + R + + LPS R + Y + + Sbjct: 492 WWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFVHDGRALRMQLPSGRAISYHNARLHL 551 Query: 575 --GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 G + T K+ N+ Q ++RD+ + + + IV V+DE Sbjct: 552 EPGANVPIAIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRVE-QIVHHVYDE 610 Query: 632 IVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E + L M + +W GLPL AEG+ R+RK Sbjct: 611 ALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 100/670 (14%), Positives = 183/670 (27%), Gaps = 144/670 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ-----YLRDETVMCVAHNSLFERILF 80 + A D +P L D V H + + Sbjct: 297 LVGLGIALPDGRTAYVPLRHDVLGSVQVPEARFAHVMGGLLADPAVKKGGH----DLKVL 352 Query: 81 KKTLG---IDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIA 133 LG + + +L+ +L + L Sbjct: 353 SLLLGGMKLTLQGAH-DDVELLSYLLNPSRREHALPDLSRERLGLELPALPATAEGKKGR 411 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + S + + + + L + D E L + Sbjct: 412 PLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALAR------DMELPLLPILAR 465 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + +G ++D + L + E + + I L + L L+ + + Sbjct: 466 MEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQLAQVLYEKLQLPI 524 Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T + +L IL + S L+TL V+ DGR+ T Sbjct: 525 LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAKDGRIHTTYH 584 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A+ TGR S QN+P +R +A Sbjct: 585 QA-ATATGRLSSSDPNLQNIP------------------------VRTELGREIRRAFVA 619 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G +LV AD + +E R+LA IA + + AF + EDI+ T A+ F DKV ++QR Sbjct: 620 EAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRR 679 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 + K + GL S + Sbjct: 680 VAKTVNF--------------GIAYGLSPHGLSTRLS----------------------- 702 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + ++ G+ + +D E Sbjct: 703 -------ISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMF------------ 743 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR + +D+ + A + +Q + D++ Sbjct: 744 --------------GRRRLMADLNSKNRAVAQAAERAA---------INMPIQGTAADLI 780 Query: 611 CEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 + M + ++L VHDE++ E P+ V L M+ + +PL Sbjct: 781 KKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMSSVAT--LKVPL 838 Query: 664 KAEGYEAKRY 673 K + K + Sbjct: 839 KVDVGAGKTW 848 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 92/579 (15%), Positives = 160/579 (27%), Gaps = 125/579 (21%) Query: 91 KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 R+ V A L K GK L + D Sbjct: 416 GRYFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGK-LDFTQMMKEDEKKAVD 474 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 C AW+ ++ E L D E L + + + G R D + Sbjct: 475 CACYEVYTAWKSKPVLLQKLKEMDM-----LTLYRDIELPLVFVLYDMENEGIRADGIKL 529 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + +A +L++ I + + L + LF G+ ++ T Sbjct: 530 KEYGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTKTGYSTAAD 588 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + LS ++SDG++ TL + TGR S Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLNQT-ITATGRLSST 647 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + G V +D + Sbjct: 648 EPNLQNIP------------------------IRIELGKLIRKVFLPEEGDLFVDSDYSQ 683 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++G++ I+AF NG+DI+ +T + F+TP D+V+ QR K + + Y Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYG- 742 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + S F + + + + + G Sbjct: 743 ----ISAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIR 798 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + Sbjct: 799 PI---------PELNSSNFMQRQ------------------------------------- 812 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 G+ +N+ + DI+ M Sbjct: 813 ----------FGERVAMNSPIQG------------------TAADIIKIAMIRVHDRLLD 844 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655 ++L VHDE++ ET + V L M Sbjct: 845 EGLKSRLILQVHDELLIETKEAEKDKVIKLLEKEMRGAV 883 >gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] Length = 875 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 94/651 (14%), Positives = 184/651 (28%), Gaps = 133/651 (20%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A + D + + L ++L D T + +S + K+ GI + Sbjct: 332 LGIALS-DGIKTQYIPFDNAAK-SDTLRRWLEDATKIKYMSDSKAAQASLKRA-GIQLAG 388 Query: 91 KRWICTSVLARTNGLPSSLKN---ACLALNF-SEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + N S + L + + GK + P Sbjct: 389 VDF-DLLLASYINNPALSGDDIATLARELGYYDVQADEAVYGKGAKR--------AIPDL 439 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A HV + +EA + ++ + E L + + G ++ + Sbjct: 440 DQLAQHVSRKAFAVWSLQPKLEALLKDNEQFDLYKNLELPLAGILGEMESEGITVNRATL 499 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 K+ + + + ++++I G + L + LF G+ ++ ++ T Sbjct: 500 EKMGQELNDKLVVIEQEIYAEA-GETFNINSPKQLGVILFDKLGLPVIKKTKTGYSTAAD 558 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L + IL + L + + T + TGR S Sbjct: 559 VLEKLQSEHAIIEHILLYRQLGKLQSTYIEGLLKEIHESNSKVHTRFQQALTATGRLSST 618 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R + L AD + Sbjct: 619 DPNLQNIP------------------------IRLEEGRKIRQAFVPSKEDWILFSADYS 654 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++ + ++AF G D++ T F+ D+V R K + + Sbjct: 655 QIELRVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIV-- 712 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN+ + Sbjct: 713 ------------YGISDYGLSQNLD------------------------------ITRKE 730 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + A GV Q D+ + ++ Sbjct: 731 AANFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILN----------------------- 767 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---- 618 RR D+ L + + +Q + DI+ + M + Sbjct: 768 ---RRRYLPDITSSNFNLRSFAERT---------AMNTPIQGSAADIIKKAMIDMDARLK 815 Query: 619 --KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 K ++L VHDE++ E P + + +M A +PLK + Sbjct: 816 KEKMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENAIELA--VPLKVD 864 >gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537] Length = 896 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 91/634 (14%), Positives = 175/634 (27%), Gaps = 132/634 (20%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112 ++ + TV +N +R+LFK+ L I++ + + + A + L Sbjct: 375 EIKAIIESPTVEKRVYNVKAQRVLFKR-LDIELRNATF-DFLLAAYLLDTTDNNAELATL 432 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + L + GK +F + + H+ V + Sbjct: 433 AQKYDIYLQLDEDIYGKGA--KFSVPTDEGRVL-----MHIAHKADTLNQLIEPVMVQLK 485 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L D E L + + G R+D + + ++ E + + +++ I + Sbjct: 486 EHEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEEF 545 Query: 233 RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ T +L IL + Sbjct: 546 -NINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEKLADQAPIVAYILQYRQLAKLKS 604 Query: 290 LKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V D ++ ++TGR S QN+P Sbjct: 605 TYIDGLLAVVYRQDSKIHTRYLQT-LTQTGRLSSVDPNLQNIP----------------- 646 Query: 349 RGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +R + ++ AD + IE RVLA + G+ +AF N ED Sbjct: 647 -------MRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDKNLQRAFLNDED 699 Query: 408 IYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 I+ T F D ++ QR K + + Y L Sbjct: 700 IHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYG-----ISDFGLSNNL--------- 745 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + K V + ++ Sbjct: 746 ------------------------------GISRAEAKRFIDTYFEKFPQVHEWMENAKT 775 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + RR D+ + + Sbjct: 776 LAHEQGY--------------------------VETLAKRRRYLPDIHAKNFNRRSFAER 809 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP 640 +Q + DI+ M ++L VHDE++ E P + Sbjct: 810 T---------AMNTPIQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPTSE 860 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +M A +PLK E + Sbjct: 861 IPELEEIVPQVMDSAV--ALDVPLKVESRHGSNW 892 >gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171] Length = 567 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 94/659 (14%), Positives = 187/659 (28%), Gaps = 138/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 + + E + +++ + V ++ + LG + Sbjct: 25 IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYTVS 79 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPY 145 + + + S+ + + +++E + GK + + Sbjct: 80 GITF-DIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKR----STPEESIV 134 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A A + + D+E +L + D E L + + +G +D Sbjct: 135 APHLARKAVAIAVLEKRLLDDLEKNEQLAL----MEDLELPLTFVLAQMEMQGVSVDTKR 190 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ +A K L+E I L + L + LF G+ V ++ T Sbjct: 191 LEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAA 249 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D IL + L + + T ++TGR S Sbjct: 250 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 309 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P +R + S G K+ AD Sbjct: 310 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSQPGWKIFSADY 345 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA I+ ++ I AF + DI+ T F+ ++V R K + Sbjct: 346 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF---- 401 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 402 ----------GIVYGISDYGLSQN------------------------------LGITRK 421 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + V + +D+ + RR +P +V R Sbjct: 422 DAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYXETILHRRR--YIPEIVSRNFN------ 473 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 + + +NT +Q + DI+ + M Sbjct: 474 ---------VRGFAERTAMNT------------------PIQGSAADIIKKAMILMSDRL 506 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 507 KSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 563 >gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] Length = 887 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 88/667 (13%), Positives = 181/667 (27%), Gaps = 144/667 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82 A + +D+ + + + + L DE + N F+ + Sbjct: 340 ADFVGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRSMVGAH 391 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKG 138 LGI + + + ++ + ++S GK Sbjct: 392 RLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDD 450 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + ++ N +++ + +D E L E + + G Sbjct: 451 DDELFNHLASKINAIESLKKPLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMNG 503 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ +++LQ A + K+L++ I + L LF G+ ++ ++ Sbjct: 504 MKVKASTLIQLQNEFAVQLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPVIKKTK 562 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ + + L + + DGR+ + Sbjct: 563 TGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LT 621 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 TGR S QN+P +R + Sbjct: 622 ATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDG 657 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 + D + +E RVLA ++G+ +AF G DI+ T K F+ V+ R K Sbjct: 658 YIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAK 717 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ S+N Sbjct: 718 AVNF--------------GIVYGISDYGLSKN---------------------------- 735 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + + + Sbjct: 736 --LGISRKRAKEFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMH-------------- 779 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ + + R + +Q + DI+ Sbjct: 780 ------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADIIKIA 818 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M N K +VL VHDE++ + P +V + +M +PL A+ Sbjct: 819 MINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQSAVR--LDVPLIAD 876 Query: 667 GYEAKRY 673 + Sbjct: 877 SGWGHNW 883 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 88/636 (13%), Positives = 182/636 (28%), Gaps = 147/636 (23%) Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++ V ++ + +GI + + + A + Sbjct: 374 KAVETAKMLFENSSLSKV----SYDVKVPCSILHRMGIKLLGIEF-DIKIAAYLMDPART 428 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + K + + Y + Sbjct: 429 NYEL-------PDIIKEYL------------NIEISEEREDCFIKETLLFSRLYSTLKKK 469 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +L L + E+ L + ++ G+++D D + +++E E K+ ++I L+ Sbjct: 470 ISDSSMDKL--LYEVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKEIYFLS 527 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + L LF + ++ ++ T +L + + I+ + Sbjct: 528 EEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIYYRQLT 586 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + DG++ + TGR S QN+P Sbjct: 587 KLYSTYIEGLKGVIEEDGKIHSNFNQTV-TTTGRLSSTEPNLQNIP-------------- 631 Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I N ++ AD + IE RVLA I+G++ I AF N Sbjct: 632 ----------IKYEMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFIN 681 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DI+ T ++ FN P+ +V+ QR+ K + + Y G + L++ + Sbjct: 682 HNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIG-----DFSLARNLNIPRKEA 736 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + FE + + + + + Q + ++ R + K + Sbjct: 737 KSYIDAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNR---------RRFIPEIKSSNKII 787 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 G+ +NT Sbjct: 788 -----------------------------------------------KALGERFAMNTP- 799 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 +Q + DI+ M N I+L VHDE+V Sbjct: 800 -----------------IQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYK 842 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL+ + + Sbjct: 843 DELKDVKDIVKEEMENVFK--LKVPLEVDISIGDNW 876 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 88/663 (13%), Positives = 192/663 (28%), Gaps = 141/663 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI- 86 I + ++ ++ + + L + L D+T+ N F+ + +G+ Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLRKMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 ++ ++ + + ++ + + K + + KG + Sbjct: 392 RLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAV 447 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P D H+ A E K + + ++ E + + + G +++ Sbjct: 448 PDDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 ++ +L A + ++L+ I + + L LF G+ + ++ T Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYST 566 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL+ + + L E + DGR+ + TGR Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDGRIHTRYLQT-LTATGRL 625 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVV 378 S QN+P +R + +G Sbjct: 626 SSVDPNLQNIP------------------------TRTNEGKQIRKAFVPSTKDGYIF-S 660 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 D + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + ++ + D + + Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH------------------ 778 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ + + R + +Q + DI+ M N Sbjct: 779 --------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINM 821 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K +VL VHDE++ + P ++ + +M +PL A+ Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWG 879 Query: 671 KRY 673 + Sbjct: 880 HNW 882 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I + D E + D S S L + + +N + I K I++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391 Query: 90 SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142 + ++ SS C L+ + GK + D Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y V+ E D+ + LF + E L + + G ++D Sbjct: 451 AEYMGQIICTVKETIPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ +L + L+++I +L+ + L + LF + ++ ++ Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L D I + L ++ + R+ + + TG Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R IA + KLV Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + A + Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++ AK+ + + E + ++ Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR ++K + +Q + DI+ M N Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E D V + M + + L + Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--MDVHLDVDLNVGS 876 Query: 672 RY 673 + Sbjct: 877 SW 878 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I + D E + D S S L + + +N + I K I++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391 Query: 90 SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142 + ++ SS C L+ + GK + D Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y V+ E D+ + LF + E L + + G ++D Sbjct: 451 AEYMGQIICTVKETVPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ +L + L+++I +L+ + L + LF + ++ ++ Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L D I + L ++ + R+ + + TG Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R IA + KLV Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + A + Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++ AK+ + + E + ++ Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR ++K + +Q + DI+ M N Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E D V + M + + L + Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--MDVHLDVDLNVGS 876 Query: 672 RY 673 + Sbjct: 877 SW 878 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 113/661 (17%), Positives = 202/661 (30%), Gaps = 132/661 (19%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + + A D P + D A DE ++ + + + + LGI Sbjct: 332 HSKVYKLAIKTKDSPAYILD--PDQAFIDSFKDVFEDEKILKNSFDIKEDI-VLLNKLGI 388 Query: 87 DIPSKRWICTSVLARTNGLPSS---LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDS 142 D+ + ++ S LK L++ GK + Sbjct: 389 DLNL-PFDDLMLMHYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGKGKKSLSYGELDYD 447 Query: 143 PPYDC-TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + + +L++ D E L + + G+ Sbjct: 448 KLSNYLASELNAIEDAKAKLVDMLNEYKMYDLYE------DIEIKLSKVLANMEIVGFVT 501 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D ++L L+E I ++ +KL +I +L + T L LF + ++ ++ Sbjct: 502 DRKVLLDLKEDINKDLEKLTSEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTGF 560 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T S+L I + L +A+ DGR+R T + A TG Sbjct: 561 STDASVLEKLRDKHQIIPKIEKYRELFKLQSTYIEGLEKAIDDDGRIRSTFRQNIA-ATG 619 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QNLP +R A GK L+ Sbjct: 620 RLSSQDPNLQNLP------------------------IKTDEGRLIRKAFKAGQGKILID 655 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA ++G++ I+AF NGEDI+ T +K F+TP+D+V+K QR+ K + Sbjct: 656 ADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L++ Sbjct: 716 IIYG-----ISDYGLSQNLNIP-------------------------------------- 732 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + A + + + E D Sbjct: 733 -RKEAKAYIDNYMASYPSIKAYMDSIVEKAKE--------------------------DG 765 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + +RR ++ + + ++ +Q + DI+ M Sbjct: 766 FVETLFNRRRYVPEINSKNFNVRSFGQRV---------ALNTPIQGTAADIIKIAMIETD 816 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671 N K G IVL +HDEI+ E S + M + + +PL + + Sbjct: 817 KNLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAAN--LKVPLIVDIDTGE 874 Query: 672 R 672 Sbjct: 875 S 875 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 170/659 (25%), Gaps = 159/659 (24%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A S + +L +L D V+ VA + + + LGI+ Sbjct: 346 IGLARKRGEACAV----TSELIVELKPWLEDAAVVKVACDVKSAVLQLAR-LGIEARGFG 400 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + D H Sbjct: 401 -HDVMIYGFLLD-----------------------------------ADPGGCGLENQAH 424 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRID 202 + G ++ + T EL+++L P + E L + + G RID Sbjct: 425 RRLDLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLTRVLARMERTGIRID 484 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMS 257 + +L L+ + L +I L + L LF + + Sbjct: 485 GAELKRLSVLMESQISGLTAEIHALAGKPF-NISSPQQLGKVLFEDLNLPAPVKYGKGKT 543 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 T +L +L + ++ L + GRL + GA Sbjct: 544 ISTAADVLDELAAEHEIVRKVLEYRQLTKLKGTYVDALPALIDPATGRLHTSFNQTGA-A 602 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P +R+ + +G KL Sbjct: 603 TGRLSSSNPNLQNIP------------------------IRTSLGREIRAAFVPRDGWKL 638 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 +VAD + IE R+LA ++G++ ++AF GEDI+ T A+ P V+ E R K + Sbjct: 639 LVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEARRDAKAVN 698 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L + + + F + + + + V Sbjct: 699 FGIVYG-----ISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIAEVRKTGVTK 753 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 L G + + + Sbjct: 754 TLFGRERPI---------PEINGRNPNARGFAERTAVNSPLQGTAADLI----------- 793 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 +L + + QA M Sbjct: 794 ----------KLAMVRIDAALAAGGF--------------------QA--------AM-- 813 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674 +L VHDE+V E P V + M +PL + +R Sbjct: 814 --------LLQVHDELVFECPPEELDEVSRMVKREMEGACE--LKVPLVVDVGSGDNWR 862 >gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067] Length = 566 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 183/659 (27%), Gaps = 138/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 + + E + +++ + V ++ + LG + Sbjct: 24 IGLTIHSDKGTYFFTKETAENSPAFKEWVESDASKVV-----YDAKKTMVAMHRLGYAVS 78 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPY 145 + + + S+ + + +++E + GK + + Sbjct: 79 GITF-DIMLASYLLNPSDSIADFTSVAIRHDYTEVETDEAVYGKGAKR----STPEESVV 133 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A A + + D+E +L + D E L + + +G +D Sbjct: 134 APHLARKAVAIAVLEKRLLDDLEKNEQLSL----MEDLELPLTFVLAQMEMQGVSVDTKR 189 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ +A K L+E I L + L + LF G+ V ++ T Sbjct: 190 LEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAA 248 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D IL + L + + T ++TGR S Sbjct: 249 DVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSS 308 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P +R + S G K+ AD Sbjct: 309 VDPNLQNIP------------------------IRLEEGRKIRQVFVPSQPGWKIFSADY 344 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA I+ ++ I AF + DI+ T F+ ++V R K + Sbjct: 345 SQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF---- 400 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 401 ----------GIVYGISDYGLSQN------------------------------LGITRK 420 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + V + +D+ + RR + Sbjct: 421 DAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG----- 475 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 + + +NT +Q + DI+ + M Sbjct: 476 ------------FAERTAMNT------------------PIQGSAADIIKKAMILMSDRL 505 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 506 KSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 562 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 90/669 (13%), Positives = 184/669 (27%), Gaps = 148/669 (22%) Query: 28 AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81 A + +D + + D E+ + L DE + N F+ + Sbjct: 340 ADFVGFSLKIND-KIYVSRDVDLLEEDNI----KHILEDEKIKK---NV-FDLKRSMVGA 390 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCK 137 LGI + + + ++ + ++S GK Sbjct: 391 HRLGIHTHGLDY-DMLLASYLVNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPD 449 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + ++ N +++ + +D E L E + + Sbjct: 450 DDDELFNHLASKVNAIESLKKTLLEKLKDHE-----QDDLFDTI--EIPTARVLAKMEIN 502 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +++ +++LQ A + + L++ I + + L LF G+ ++ + Sbjct: 503 GMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEF-NLNSPKQLGHILFEKLGLPVLKKT 561 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L IL+ + + L + + DGR+ Sbjct: 562 KTGYSTSVEVLDQLKTQSPIVKEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-L 620 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SN 372 + TGR S QN+P +R + + Sbjct: 621 TATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSDPD 656 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAI 431 G D + +E RVLA ++G+ +AF G DI+ T K F+ DKV+ R Sbjct: 657 GYIF-SCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRH 715 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y L Sbjct: 716 AKAVNFGIVY-----GISDYGLSKNL---------------------------------- 736 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + + ++ + + + Sbjct: 737 -----GISRKQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMH------------ 779 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 RR D+ T + R + +Q + DI+ Sbjct: 780 --------------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIK 816 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 M N K +V+ VHDE++ + P ++ + +M +PL Sbjct: 817 IAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLI 874 Query: 665 AEGYEAKRY 673 A+ + Sbjct: 875 ADSGWGHNW 883 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 102/662 (15%), Positives = 193/662 (29%), Gaps = 135/662 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143 + + + A + K+ C E + GK + Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFCTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R HV + ELF L E L + + +G ++D Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L IL+ + L + V D ++ ++TGR Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G + Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 A + + GV + +D+ + + R +P + R Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 885 Query: 672 RY 673 + Sbjct: 886 TW 887 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I + D E + D S S L + + +N + I K I++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391 Query: 90 SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142 + ++ SS C L+ + GK + D Sbjct: 392 -NMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y V+ E D+ + LF + E L + + G ++D Sbjct: 451 AEYMGQIICTVKETVPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ +L + L+++I +L+ + L + LF + ++ ++ Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L D I + L ++ + R+ + + TG Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R IA + KLV Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + A + Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++ AK+ + + E + ++ Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR ++K + +Q + DI+ M N Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E D V + M + + L + Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--MDVHLDVDLNVGS 876 Query: 672 RY 673 + Sbjct: 877 SW 878 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 103/657 (15%), Positives = 198/657 (30%), Gaps = 136/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A P + +++ + DE ++ + + + +L K LGID Sbjct: 336 IAIKTKKSPTYI--AEPDEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGAL-P 391 Query: 93 WICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALI--ARFCKGSIDSPPYD 146 + ++ S +K L++ + + GK + Sbjct: 392 YDDIMLMHYLIDPSRSSYDMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDKLGNFM 451 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDL 205 + N + Y +D + + + E +L + + G+ D + Sbjct: 452 ASEINAI--------YDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTDRKV 503 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + +L+E I + +L ++I +L+ + T L LF + ++ ++ T Sbjct: 504 LEELKEGIDADIDELTQEIYELSGSEF-NINSTKQLGEVLFKDLELPVIKKTKTGFSTDA 562 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 S+L I + L +A+ DGR+R T + A TGR S Sbjct: 563 SVLEKLRDKHQIIPKIERYRELFKLRSTYIEGLEKAIDYDGRIRSTFRQNIA-ATGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QNLP +R A GK L+ AD + Sbjct: 622 QDPNLQNLP------------------------IKTDEGRLIRKAFKAEEGKILIDADYS 657 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA ++G++ I AF N +DI+ T +K F+TP+++V+K QR+ K + + Y Sbjct: 658 QIELRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYG 717 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L+ + Sbjct: 718 -----ISDYGLSQNLN---------------------------------------ISRKE 733 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + A + + + + E Sbjct: 734 AKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLFK----------------------- 770 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR ++ + + ++ +Q + DI+ M KN Sbjct: 771 ---RRRYVPEINSRNFNVRSFGQRV---------ALNTPIQGTAADIIKIAMIETYKNLK 818 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672 I+L +HDEI+ E + M + +PL + Sbjct: 819 KEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESAAN--LEVPLIVDIDTGDS 873 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 183/662 (27%), Gaps = 147/662 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A I A A E+ + SD+ +L VA F+ L Sbjct: 361 AEIRGMAVATPK-RAYYVRFGERLEL-SDVRPWLVS-DRPKVA----FDLKSMAFALDAH 413 Query: 85 GIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 GI + W + A G+ L A + Sbjct: 414 GIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARER-------GQELPAW--EEGEREK 464 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 T + ++ Y R E L++ + E L + + G+ ++ Sbjct: 465 WLAYTASQLPPLFESLA-YTIRMQEME-RLYQ------EVELPLAFVLAKMEITGFYVNR 516 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + ++ + + + K++ ++I L G + L LF G+ + ++ T Sbjct: 517 EKLVAFGQELTERIKRITQEIYDLA-GTSFNLNSPKQLGEILFDKLGLPALKKTKTGYST 575 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +L IL+ + + L + + GR+ + TGR Sbjct: 576 SADVLEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQT-LTATGR 634 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R + + Sbjct: 635 LSSSEPNLQNIP------------------------IRLEEGRRLRQVFEPTYKDWVIFA 670 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA ++G++ I AF DI+ T A F P ++V+ R K + Sbjct: 671 ADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNF- 729 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ +QN + Sbjct: 730 -------------GIVYGISDFGLAQN------------------------------LNI 746 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++ K GV + ++ + ++ Sbjct: 747 PQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMN------------------- 787 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR D+ S R +Q + D++ M Sbjct: 788 -------RRRYLPDIHSRN---YQLRSFAERTAM------NTPIQGSAADLIKLAMVRID 831 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P ++ L M + +PLK + Sbjct: 832 RAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVRDNMENAMT--LSVPLKVDTAYGP 889 Query: 672 RY 673 + Sbjct: 890 TW 891 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 89/664 (13%), Positives = 184/664 (27%), Gaps = 144/664 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + +D+ + + + + L DE + N F+ + LG Sbjct: 343 VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLG 394 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + ++ + ++S GK + Sbjct: 395 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 453 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + ++ N +++ + +D E L E + + G ++ Sbjct: 454 LFNHLASKVNAIESLKKTLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMNGMKV 506 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + +++LQ A + KKL++ I G + L LF G+ ++ ++ Sbjct: 507 EASTLIQLQNEFAVKLKKLEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY 565 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ + + L + + DGR+ + TG Sbjct: 566 STSVEVLDQLKTQSPIVSKILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATG 624 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 625 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 660 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K + Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 720 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ S+N Sbjct: 721 F--------------GIVYGISDYGLSKN------------------------------L 736 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + + + Sbjct: 737 GISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMH----------------- 779 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ T + R + +Q + DI+ M N Sbjct: 780 ---------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMIN 821 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 822 MQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 879 Query: 670 AKRY 673 + Sbjct: 880 GHNW 883 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 95/652 (14%), Positives = 181/652 (27%), Gaps = 131/652 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I ++A + E + L D + HN E I GI Sbjct: 350 GGIAAASFALEGESTAYSLDGPPDKILEILKTICEDGNIKKYCHNGK-ETIRLLHRNGIT 408 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + T + A SS ++ ++ P D Sbjct: 409 LRQLAF-DTMIAAYLLNPASSNQDL-EDISLEHLN-----------------AVLPGEDR 449 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + ++ +L+ + + E L + + G +D + Sbjct: 450 KLPAQAHCIMEL----AQLLDNKLKLYGQDRLFYEIEIPLAGILAEMEIEGVAVDKKQLE 505 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 + E + ++ +KL ++I +LT + L LF + ++ ++ T + Sbjct: 506 AMSEELGRQIEKLADEIYRLTGREF-NINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADV 564 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 L A IL + + L+ ++ G+L T + TGR S Sbjct: 565 LEELAAAHEAVAKILEYRQMAKLKSTYADGLAALINPETGKLHTTFHQTV-TNTGRLSSS 623 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P A +R I L+ AD + Sbjct: 624 DPNLQNIP------------------------IRLEAGRLIRKVFIPGRPENLLLTADYS 659 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+G+ IKAF NGEDI+ T A+ F ++V++E R K + + Y Sbjct: 660 QIELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYG 719 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + F + + + + + + L+ Sbjct: 720 -----LSDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNR- 773 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + + + Sbjct: 774 --------RRYLPDLFSPNRTIRSFGERTAMNTPIQGSAADII----------------- 808 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 +L ++ + + L M Sbjct: 809 ----KLAMVNIHRELAEHG----------------------------LKAKMI------- 829 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ + P + L M +PL E + + Sbjct: 830 ---LQVHDELIFDAPAVEIDQLKDLVKRCMENA--LVLEVPLLVEIKAGRNW 876 >gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A] gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A] Length = 1020 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 104/690 (15%), Positives = 181/690 (26%), Gaps = 158/690 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA + + A + L L Sbjct: 443 MQAELAGLSLALAPNDACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPILESGG 502 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEH 121 + + N F +L + GI + + +++ T L + L + Sbjct: 503 HLKIGLNIKFSAVLLAQH-GIVMQNH--DDVELISYTLDAGRGSHDLASLAKRWLGHTTL 559 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 G A A Y + T L++ L P Sbjct: 560 SHGELTGSGRNRL---------------AVDQVAIDRATAYAAEYADMTLRLWQVLKPRL 604 Query: 182 DGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ER + + RG ID ++ +L +AQ +L+ +I +L Sbjct: 605 VAERMNAVYETLERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEP 664 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSG 286 I + + +F G+ ++ T +L IL+ S Sbjct: 665 I-NVGSPKQIGDIMFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSK 723 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E V+ R T A+ TGR S QN+P Sbjct: 724 LKSTYTDALPEYVNPQTRRVHTTYALAATTTGRLSSNEPNLQNIP--------------- 768 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA+ G +LV AD + IE R+LA IA +AF +G Sbjct: 769 ---------VRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDGL 819 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T ++ F P+ + E R K + + Y L + + Sbjct: 820 DIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAAA 874 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 FE + ++ +D E L G C + + Sbjct: 875 YIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCH---------YPDIKAPNPSHRA 925 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + A++ R M R + S+R L Sbjct: 926 FNERAAINARLQGSA--ADIIRRAMVRMDDALAAKKLSARML------------------ 965 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVG 645 ++ E PD ++ Sbjct: 966 ----------------------------LQVHDE-----------LIFEVPDEEVAATLP 986 Query: 646 TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL+ + A + Sbjct: 987 VVQHVMQDAPFPAVLLSVPLQVDARAADNW 1016 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 101/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L + + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLANGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D D + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSCKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF N DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 92/641 (14%), Positives = 183/641 (28%), Gaps = 131/641 (20%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--- 105 + + L DE + + + + + K GID+ + + ++ Sbjct: 351 HGDDILK-IRTILEDEDIEKIGYEMKADYVALK-PYGIDLRNMAF-DIAIAEYVIDSKTS 407 Query: 106 -PSSLKNACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 + + + ++K GK A + + G Y Sbjct: 408 TSYDIDSISSKYIYKTIMSKEDLLGKGAKALDYRQVDLEKLDQYVSGM---LSTIIGSYP 464 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 K + L D E L + + G +D D++ L + + K +++ Sbjct: 465 KMKKIIDEDQLSMLF--YDVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKTEKN 522 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L LF G+ ++ ++ T +L ++I Sbjct: 523 IHELAGQDF-NVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAEVLEKLRDKHEIINMITE 581 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ + V+ DGR+ + + TGR S QN+P Sbjct: 582 YRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQT-ITTTGRISSTDPNMQNIP-------- 632 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA + LV AD + +E RVLA ++ + I Sbjct: 633 ----------------VRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMI 676 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF +GEDI+ T ++ FN ++V+ E R+ K + + Sbjct: 677 EAFNSGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGII------------------- 717 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A + + +++ K++ + Sbjct: 718 -------------------------YGKSDFGLAQDLNISQKKAKEYIESYFNKYETIKA 752 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + RR ++K Sbjct: 753 FMDHIVSEAEEKGYSTTIFN--------------------------RRRYIPEIKSSNFV 786 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 + +Q + DI+ M N ++L VHDE++ Sbjct: 787 EKNRGKRA---------AMNAPIQGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELI 837 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E V L M + G+ LK + K + Sbjct: 838 VEATADELTQVEVLLREEMENAVN--LGVDLKVDLNIGKSW 876 >gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 876 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 103/663 (15%), Positives = 200/663 (30%), Gaps = 131/663 (19%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFK 81 Y + A I + + + V + + +L+++L D+ + +++ + + Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKNYKNLVRWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 LGI+I + + + + S+ + + K I F KG Sbjct: 382 HRLGINIENIEF-DVMLASYIIDPSRSIDDVKSVVGLYGQNY----VKDNITVFGKGKKH 436 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P + H+ + +++ E + ++ L D E L + + + G Sbjct: 437 HIPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYT 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D++ + +++ I ++ L +I + G + L + LF + ++ ++ Sbjct: 497 DINDLKEMEFEIQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGY 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L D IL S + L + +S D R+ A +TG Sbjct: 556 STAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R S ++ Sbjct: 615 RLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ SQ+ Sbjct: 711 --------------GIVYGISDYGLSQS------------------------------LG 726 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV Q D+ + + RR Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL--- 783 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ M Sbjct: 784 --------------RSFAERTAMNT------------------PIQGSAADIIKLAMVKF 811 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670 ++ ++L VHDE++ E P + + +M + +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 102/677 (15%), Positives = 205/677 (30%), Gaps = 136/677 (20%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72 Q + + + I A+++ ++ V D + DL + E H Sbjct: 312 LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIFEKEKFEFTTHE 366 Query: 73 SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEG 128 + ++ GI+ +++ T+++A S L L + G Sbjct: 367 IK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 424 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 K + + + D + + LF K KRL L + E L Sbjct: 425 KGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKRL--LLEIEMPLV 479 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + +++ G+ +D +++ +L + I ++ + I K + L +LF Sbjct: 480 EVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEK 538 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + ++ ++ T +L + I+ + ++ + + R+ Sbjct: 539 LNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQLTKLKSTYIDGFLPLMDENNRV 598 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 599 HSNFKQMV-TSTGRISSTEPNLQNIP------------------------IREEFGRQIR 633 Query: 366 SCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 I +G +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++K Sbjct: 634 RAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEK 692 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ E R K + + G+ S Sbjct: 693 VTPEMRRAAKAVNFGII--------------YGISDYGLS-------------------- 718 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 K+ + + +++GV + + + ++ Sbjct: 719 ----------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIMN---- 764 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 RR ++ T SQ R +Q Sbjct: 765 ----------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQ 793 Query: 604 AISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656 + DI+ M ++L VHDE+V +T V + M Sbjct: 794 GSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENVVQ 853 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL E + Sbjct: 854 --LKVPLVVEIGVGPNW 868 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 92/686 (13%), Positives = 190/686 (27%), Gaps = 141/686 (20%) Query: 10 TRSPQPLPK----VGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 T + K V + Y E + + A + + + + + Sbjct: 308 TTLDPSILKDEMAVHLELYDEHYHSCDLLGVSLATE-RDTYVIPMDVVER-SEEFRAWCK 365 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNF 118 D T +S F + G+++ + + A + + + Sbjct: 366 DSTKKKFMSDSKAATAAFLR-FGVELRGVDF-DLMLGAYIVNPSLTYTDMASIVQEYGHN 423 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + GK + + +I A ++ + L Sbjct: 424 DVSTNEQIYGKGAKKKVPEDAILHEHIARK------ARTIWKVRPLIMAKLEDNEQFDLY 477 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E L + + G ++ D ++++ + +A + +K++ DI L + Sbjct: 478 DKL--ELPLATVLGQMESLGVMVNRDQLVEMGKELAHKLEKIESDIHGLAGQEF-NINSP 534 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L + LF G+ + ++ T +L IL + L Sbjct: 535 KQLGVILFEKLGLPALKKTKTGYSTAADVLEKLEGQHEIISHILMYRQLGKLLSTYIEGL 594 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + DG++ Q + TGR S QN+P Sbjct: 595 LKEIHEDGKIHTRFQQA-LTTTGRLSSINPNLQNIP------------------------ 629 Query: 356 PLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G +V AD + IE RVLA ++ ++ ++AF + DI+ TT + Sbjct: 630 VRLEEGRKIRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTAS 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F+ ++V+ + R K + + Y L Sbjct: 690 DVFHVTEEEVTSDMRRAAKAVNFGIVY-----GISDYGLSQNL----------------- 727 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + A GV ++ Sbjct: 728 ----------------------NIPRKEAAAFIERYFASFPGVKSYMTNIVADAKR---- 761 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 D + +RR D+ L + + Sbjct: 762 ----------------------DGFVTTLMNRRRYLPDITSSNFNLRSFAERT------- 792 Query: 595 GKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 793 --AMNTPIQGSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDHLMKLV 850 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 PEVMENAVK--LSVPLKVDIAHGSTW 874 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 187/662 (28%), Gaps = 139/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 I + ++ ++ + + L + L D+T+ N F+ + L Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENLLRKMLEDKTIKK---NV-FDIKRTYVGLHRL 393 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + + + ++ + + K + + KG + P Sbjct: 394 NLKAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAVP 448 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 D H+ A E K + + ++ E + + G +++ Sbjct: 449 DDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEAS 508 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 ++ +L A + ++L+ I + + L LF G+ + ++ T Sbjct: 509 VLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTS 567 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L + IL+ + + L E + DGR+ + TGR S Sbjct: 568 VEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDGRIHTRYLQT-LTATGRLS 626 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVA 379 QN+P +R + +G Sbjct: 627 SVDPNLQNIP------------------------TRTNEGKQIRKAFVPSTKDGYIF-SC 661 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438 D + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + Sbjct: 662 DYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFG 721 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + Sbjct: 722 IVY-----GISDYGLSKNL---------------------------------------GI 737 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + ++ + D + + Sbjct: 738 SRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH------------------- 778 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR D+ + + R + +Q + DI+ M N Sbjct: 779 -------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQ 822 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K +VL VHDE++ + P ++ + +M +PL A+ Sbjct: 823 KKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGH 880 Query: 672 RY 673 + Sbjct: 881 NW 882 >gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] Length = 838 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 195/806 (24%), Positives = 313/806 (38%), Gaps = 142/806 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDE-PVKLWDRTEQS------AMPS 55 ID ETRSP + K G + Y+ AY E VKLW P+ Sbjct: 40 TIDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPT 99 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKK----TLGID-IPSKRWICTSVLARTNGLPSSLK 110 DL ++ + AHN+ FER ++ G I +W C++ A LP SL+ Sbjct: 100 DLFAFILAGG-LVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLE 158 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSI----------------------DSPPYDCT 148 A A++ K EG+ L+ + CK S Y Sbjct: 159 EAVAAMDLGID--KDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIV 216 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + +YCK+DV A L L LS+ E + W +DQ +N RG R DL + + Sbjct: 217 YHETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQ 276 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + ++ RK+L+ + LT I S+ + A++ +L +DL D + TLK L + Sbjct: 277 ALSMASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLENE 334 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLS-EAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 ++ A+ ++ + ++ K N + +A D R R + ++GA TGRW+G Q Sbjct: 335 ELSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQV 393 Query: 328 QNLPRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADL 381 N P ++ + + + + G+ D + S +R I+A G++L+VAD Sbjct: 394 HNFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADY 453 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN------------TPIDKVSKEQR 429 A IEAR + W A + + F G+DIY + P + R Sbjct: 454 AAIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCR 513 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN--------------------VKST 469 GK L LGY G F G+ + + + Sbjct: 514 QFGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTP 573 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV---------KKAWRAKHQGVLQL 520 + E+A+ + + + ++V +RA++ V + Sbjct: 574 PSKMTPEEAKRYSARKRQAARSRRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKAM 633 Query: 521 WKDLTEGFACVVQ-----EGGSISARRVANVPRLVMR----------------------- 552 W D V+ E + +PR V Sbjct: 634 WSDQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVDA 693 Query: 553 -------RHKRDVHIVLPSSRRLVYSDVKGDCS--------------YLNTATSQLMRER 591 + + +H LPS RR+ Y D + + ++ T + +R Sbjct: 694 LAGTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTA 753 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS 649 TYGGK+ ENI QA++RDI+ E M N+ K G YD +++VHDE+V E + + + Sbjct: 754 TYGGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDEDKGD-LEEFET 812 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 LM+ P WA G P+ AE KRYRK Sbjct: 813 LMSDLPIWAAGCPIVAEAERFKRYRK 838 >gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] Length = 886 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 89/663 (13%), Positives = 192/663 (28%), Gaps = 141/663 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI- 86 I + ++ ++ + + L Q L D+T+ N F+ + +G+ Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENSLRQMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 DI ++ + + ++ + + K + + KG + Sbjct: 392 RLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHL----YDDYSVKTDLEVYGKGKKQAV 447 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P D H+ A E K + + ++ E + + + G +++ Sbjct: 448 PDDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 ++ +L A + ++L+ I + + L LF G+ + ++ T Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYST 566 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL+ + + L + + DGR+ + TGR Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLDCIQPDGRIHTRYLQT-LTTTGRL 625 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVV 378 S QN+P +R + +G Sbjct: 626 SSVDPNLQNIP------------------------TKTEEGKQIRKAFVPSTKDGYIF-S 660 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 D + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + ++ + + + + Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH------------------ 778 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ + + R + +Q + DI+ M N Sbjct: 779 --------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINM 821 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K +VL VHDE++ + P ++ + +M +PL A+ Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWG 879 Query: 671 KRY 673 + Sbjct: 880 HNW 882 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 107/683 (15%), Positives = 187/683 (27%), Gaps = 149/683 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF+D+E G + + A + E V+ E S+ L Q LR+ Sbjct: 340 LFLDLE----------GGYQF---GTPRGVGVA-EGERVRYLLCGEDSSWAEGLTQMLRE 385 Query: 64 ETVMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----AL 116 + + ++ + LG +P + + A + L Sbjct: 386 PGLTVL-----YDIKSWKVLADRLGFTLPGDAF-DVLLAAYLINPQDGHPDLTEVFERYL 439 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 S EG+ + R + A L G Y + Sbjct: 440 GVSVPP---LEGRGSPQ----------GEERQRWWALYAAALAGVYPALKRDLEIRGLWP 486 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E L + + G R+D + L E + E +L+E+I KL G + Sbjct: 487 LYHNL--ELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLA-GTTFNLN 543 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF G+ ++ T +L IL+ + Sbjct: 544 SPKQLAEILFDKLGLPPQKKTKTGYSTGADVLEKLAPYHEIVQRILDWRQLIKLQSTYIE 603 Query: 294 TLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + + G++ Q + TGR S QN+P Sbjct: 604 GLLKVIRPETGKIHTCFQQAV-TATGRLSSTDPNLQNIP--------------------- 641 Query: 353 IADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R I S G K+V AD + IE RVLA + + ++AF + DI+ Sbjct: 642 ---VRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLDIHAR 698 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T A+ F P ++V+ R K + + Y L + + Sbjct: 699 TAAEVFEVPQEQVTPGMRRQAKAVNFGIVYG-----ISDYGLSQNLGIPRKEAAEFIARY 753 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 F + + +S+ + L+G R + +L Sbjct: 754 FAKFPRVKSYMEETVAAARKNGFVTTLLGR---------RRYLPDIHSSNYNLRSFAERT 804 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 + +V RRL D + Sbjct: 805 AMNTPIQGSAADIIKRAMVEVD------------RRLTEGDFR----------------- 835 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL- 650 + + E+V E P ++ + Sbjct: 836 -------------------AKMLLQVHD-----------ELVFEVPPEEVGALQDMVKQA 865 Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673 M S +PLK + + + Sbjct: 866 MESAVS--LDVPLKVDIHAGDNW 886 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/721 (13%), Positives = 176/721 (24%), Gaps = 189/721 (26%) Query: 31 TLCAYAWDDEPVKLWDRTEQSA---MPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82 A + + + +P+ L L + + AH+ + K+ Sbjct: 423 VGLALSSEPGRGWYFPFMGPPGATVIPAQTARDLLTPLLENPRIAWHAHDLKAHLRVLKR 482 Query: 83 TLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA-LNF-------------------- 118 G + K VL+ + LN Sbjct: 483 H-GWTLAGKGV-DPMVLSYLLESGERNHTAPELAKRFLNHTLSRPPEPNASATTTRSKPK 540 Query: 119 -------------------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQA 155 + T G L D + Sbjct: 541 ANPKRGRSRSQADASEETNPDDETPDVVG--LPQTTGTPPRDGFLVFADDPHQDGPAAVP 598 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDL 205 + + +A+ L + L E R L + + + G +D Sbjct: 599 PERLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLERPLIEILADMEEAGVALDRAR 658 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTL 261 + +L + L+ +L + LR+ LF G+ T Sbjct: 659 LRQLSRDFSARLTDLERQAHQLAGEPF-NLSSPPQLRVILFERLGLPPRGKTPKGEASTA 717 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +L ++L L+ L DGR+R T G + TGR S Sbjct: 718 QEVLEELAALHQLPKVLLEHRRIEKLKNTYLDALPNLTHPDGRIRATFNQ-GVTATGRLS 776 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVA 379 QN+P VR +A + L+ A Sbjct: 777 SSEPNLQNIP------------------------VRTEEGRQVRQAFVAGDPARQVLLTA 812 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA + + ++AF DI+ AK F +D V+ +QR + K + Sbjct: 813 DYSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNF-- 870 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL A + + Sbjct: 871 ------------GVIYGLS------------------------------AHGLASRLGIS 888 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + A+ ++ V + + RR N Sbjct: 889 QSEAAAFINAYFDQYPHVEAFMTRVLTQARDTGRVETLEGRRRAING------------- 935 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618 I R R ++Q + D++ M Sbjct: 936 IKHVEGRHRNL----------------AERTAI------NTVIQGSAADLIKRAMIAVDQ 973 Query: 619 -----KNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 K ++L +HDE++ E + + M + PLK + Sbjct: 974 RLKETKLPARMILQIHDELLFEVERDALTETARLVQEAMIHAAT--LETPLKVDLAAGPN 1031 Query: 673 Y 673 + Sbjct: 1032 W 1032 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi] Length = 850 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A I + A+D E E Q L ++V+ + H + L Sbjct: 324 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 379 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + +++ + SL + Sbjct: 380 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARM 423 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + N + +LF Y ER L + + + G Sbjct: 424 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 465 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253 +D +++ +L + + L+++I L + L LF G+ + Sbjct: 466 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCTF-NVASARQLGKLLFERMGLSSSAKKM 524 Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 S T +L + D +L S ++ L V + + T Sbjct: 525 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 584 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P +R +A Sbjct: 585 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 620 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KLV AD + +E +++A IAG AF+ G+DI++ T + F E R Sbjct: 621 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 678 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y + Sbjct: 679 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 698 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + + + + Sbjct: 699 ----GITRQEASQYVAQYFRSYPEIKSYMEAIKAYARKYGYTRTAF-------------- 740 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ S + + T R +Q + D++ + Sbjct: 741 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 779 Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 M N G I+L VHDE++ E P++ V L +M ++ +PLK + Sbjct: 780 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 836 Query: 669 EAKRY 673 + Sbjct: 837 VGSSW 841 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 100/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 100/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 100/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDSALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 141/382 (36%), Positives = 205/382 (53%), Gaps = 8/382 (2%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 4 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 63 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQ 122 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPK 182 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+L+ R +S ++ K L + Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMK 302 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IA 354 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G Sbjct: 303 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFD 362 Query: 355 DPLGLASDCVRSCIIASNGKKL 376 + + L S +R CIIA GK Sbjct: 363 NIMELTSSALRGCIIAPTGKNW 384 >gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 567 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 202/573 (35%), Positives = 276/573 (48%), Gaps = 58/573 (10%) Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL Sbjct: 1 MDWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIG 60 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + + L LT G ++++ Q AL +L G+ L DM + T++ L + Sbjct: 61 AVERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLP 120 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 332 RQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 R S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWIAGEDWKIKAFANGEDI---------------------------------------- 408 LAW+AGE K+ AF + + Sbjct: 241 LAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 301 YKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +A W + AC++ K+AWR H + WK L Sbjct: 361 PPLLLQ--EAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAA 418 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583 ++ + + M+ + + + LPS R L Y+ + G SY+ T Sbjct: 419 TDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 T + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+++E D F Sbjct: 474 MTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L +LM P WA+GLPL AEG++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALNSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] Length = 886 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 92/664 (13%), Positives = 183/664 (27%), Gaps = 138/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + D W ++ A+ ++ L +L D + + LG Sbjct: 338 ADLIGFYIGAPDH----WYVSDDVALLAEPVLKDWLEDASHPKAVFGVK-RTQVAANRLG 392 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + + + ++ + N E + ++ Sbjct: 393 VHLAGVDF-DLLLASYLLNTTNNSNDLGTVANLHE-------------YQNVQTDEAVYG 438 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195 + L ++ + A L +L D E L L+ + Sbjct: 439 KGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQME 498 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G R+D + ++ +Q K L+E + G + L + LF G+ +V Sbjct: 499 ITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETFNINSPKQLGVILFEKMGLPVVK 557 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T +L IL+ + + L +++ D ++ Sbjct: 558 KTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGLLKSIHQDNKVHTRYLQT 617 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371 ++TGR S QN+P +R + Sbjct: 618 -LTQTGRLSSVDPNLQNIP------------------------VRLAEGRKIRQAFVPSH 652 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRA 430 ++ +D + IE RVLA I+G+ +AF DI+ T K F D+V+ + R Sbjct: 653 PDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIHANTAMKIFGLNSADEVTPDMRR 712 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + Y + + + + FE + + + + + Sbjct: 713 QAKATNFGIVYG-----ISDYGLSQNIGISRQEAKRFIDAYFEQYPGVQQFMVDIVKKAR 767 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 E + L R + +L Sbjct: 768 EEGYVETLFHR---------RRYLPDIHAKNFNLRSFAER-------------------- 798 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + +NT K+ ++Q Sbjct: 799 ---------------------------TAMNTPIQG---SAADIIKVAMILMQ------- 821 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 ++L VHDE++ E P + L S+M A +PLK E Sbjct: 822 --QELKKANLQARMLLQVHDELIFEAPTEEIPILQKLVPSVMDSAVKLA--VPLKVESGF 877 Query: 670 AKRY 673 + Sbjct: 878 GPTW 881 >gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 567 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 201/573 (35%), Positives = 275/573 (47%), Gaps = 58/573 (10%) Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL Sbjct: 1 MDWAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIG 60 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + + L LT G ++++ Q AL +L G+ L DM + T++ L + Sbjct: 61 AVERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLP 120 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 332 RQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 R S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWIAGEDWKIKAFANGEDI---------------------------------------- 408 LAW+AGE K+ AF + + Sbjct: 241 LAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDI 300 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YA +F V+KEQR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 301 YKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAAL 360 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +A W + AC++ K+AWR H + W+ L Sbjct: 361 PPLLLQ--EAVEALQWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAA 418 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583 + + + ++ + + + LPS R L Y+ + G SY+ T Sbjct: 419 TDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 473 Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 T + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+++E D F Sbjct: 474 ITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAF 533 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L +LM P WA+GLPL AEG++ RYRK Sbjct: 534 NAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781] gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763] gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719] gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299] gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115] gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300] gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224] gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937] gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117] gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819] gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796] gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781] gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763] gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719] gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299] gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115] gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300] gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224] gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937] gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117] gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981] gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819] gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796] gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03] gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 VQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 86/670 (12%), Positives = 180/670 (26%), Gaps = 146/670 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLF---ERI------ 78 A + +E +P +L + + + Sbjct: 374 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 425 Query: 79 -LFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIA 133 L ++ + +I + A ++ +K GK I Sbjct: 426 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 485 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + K + ++ N+V + K+ +E + ++ E L Sbjct: 486 QAMKDAPEAFL------NYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLAD 539 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + + G + + + + +A +L++ I + + L + LF + Sbjct: 540 MENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQLGVILFEKLSMPY 598 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ T +L IL + + L ++ DGR+ + Sbjct: 599 GKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFN 658 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R + Sbjct: 659 QT-ITATGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFVP 693 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ QR Sbjct: 694 KEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRR 753 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + Y + L Sbjct: 754 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 776 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + + L RR Sbjct: 777 -------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSS 829 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 G+ + + +Q + DI+ Sbjct: 830 NFMQ-----------------RSFGERVAM------------------NSPIQGTAADII 854 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663 M ++LTVHDE++ ET +V + M A + L Sbjct: 855 KIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA--VTL 912 Query: 664 KAEGYEAKRY 673 + + + K + Sbjct: 913 EIDAHVGKNW 922 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + + +L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKRKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102] gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102] Length = 876 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 93/673 (13%), Positives = 187/673 (27%), Gaps = 136/673 (20%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL----QYLRDETVMCVAHNSL 74 VG+ E+ I AW +E +++ Q + D L Q + + + N Sbjct: 322 VGIELLEEKGQILGLGLAWGEEETEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIK 381 Query: 75 FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKA 130 + + + + A + + K GK Sbjct: 382 ----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK- 435 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + + + ++ A+ +E K L +D E L Sbjct: 436 ---LSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELY--TDMEMPLLFT 490 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ++ + + + E + + L+++I + + L + LF Sbjct: 491 LADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKLE 549 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 + ++ T +L IL + + L+ ++ DGR+ Sbjct: 550 LPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQLTKLKSTYADGLANYIAEDGRIHS 609 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + TGR S QN+P +R Sbjct: 610 TFNQT-ITATGRISSTEPNLQNIP------------------------VRTELGRLLRKV 644 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I +G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ Sbjct: 645 FIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPL 704 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + + Y + L Sbjct: 705 QRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------------- 730 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + +++ + + L E RR Sbjct: 731 ----------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKEKGYVSTLFHRRRPVPEL 780 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + G+ + + +Q + Sbjct: 781 KSSNFMQ-----------------RSFGERVAM------------------NSPIQGTAA 805 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKG 660 DI+ M K +VL VHDE++ ET V + M + Sbjct: 806 DIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAAH--LS 863 Query: 661 LPLKAEGYEAKRY 673 + L+ + + + + Sbjct: 864 VALEIDMHTGENW 876 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 91/665 (13%), Positives = 180/665 (27%), Gaps = 149/665 (22%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80 +A +A I +D+E + TE + + L + +F+ Sbjct: 341 FANEAAIGGIGLCFDEEHAYCIEVTEQITKEFLLEKLSKLNESCGRFV-----MFDIKEA 395 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGS 139 K L I + T V A + + Sbjct: 396 MKWLPIKNQKHCFDAT-VAAYLLNP------------LKNDYTYEDVA---------REQ 433 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRG 198 ++ + + A ++ + + D+ E + L D E L + G Sbjct: 434 LNIVIEEKSEAYVKVCYEAYTAFKGSDLLYKKLEETQMLHLFEDIEMPLVFTLYDMERNG 493 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 R + + + + +L+++I ++ G + L + LF + ++ Sbjct: 494 IRAEGEALKVYSSQLGGRISELEKEIYEMA-GESFNINSPKQLGVILFEKLLLPGSKKTK 552 Query: 259 G---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T S+L +L + + L + DGR+ + Sbjct: 553 SGYSTAASVLDKLAPDYPIVSKVLEYRQLTKLKSTYADGLVNYIEEDGRIHSKFNQT-IT 611 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R + +G Sbjct: 612 ATGRISSTEPNLQNIP------------------------VRVELGRLIRKVFVPEDGYI 647 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 V AD + IE RVLA +G+ I+A+ +DI+ T ++ F+ P ++V+ QR K + Sbjct: 648 FVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVTPLQRRNAKAV 707 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y + L Sbjct: 708 NFGIVYG-----ISSFGLSEDLS------------------------------------- 725 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ D + RR Sbjct: 726 --IGRKEAAKYIEDYFKTYPGIKTFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQ- 782 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 G+ + +Q + DI+ M Sbjct: 783 ----------------RSFGERVAM------------------NAPIQGTAADIMKIAMI 808 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + +VL VHDE++ E V + M + S +PL+ + + Sbjct: 809 GVNRRLKEQNLKSRLVLQVHDELLIEAYRPELPEVEKILREEMEQAAS--LDVPLEIDMH 866 Query: 669 EAKRY 673 + + Sbjct: 867 TGENW 871 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 103/677 (15%), Positives = 205/677 (30%), Gaps = 136/677 (20%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72 Q + + + I A+++ ++ V D + DL + E H Sbjct: 312 LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIFEKEKFEFTTHE 366 Query: 73 SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEG 128 + ++ GI+ +++ T+++A S L L + G Sbjct: 367 IK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 424 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 K + + + D + + LF K KRL L + E L Sbjct: 425 KGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKRL--LLEIEMPLV 479 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + +++ G+ +D +++ +L + I ++ + I K + L +LF Sbjct: 480 EVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEK 538 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + ++ ++ T +L + I+ + +N + + R+ Sbjct: 539 LNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQLTKLKSTYINGFLPLMDENNRV 598 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 599 HSNFKQMV-TSTGRISSTEPNLQNIP------------------------IREEFGRQIR 633 Query: 366 SCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 I +G +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++K Sbjct: 634 RAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEK 692 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ E R K + + G+ S Sbjct: 693 VTPEMRRAAKAVNFGII--------------YGISDYGLS-------------------- 718 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 K+ + + +++GV + + + ++ Sbjct: 719 ----------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIMN---- 764 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 RR ++ T SQ R +Q Sbjct: 765 ----------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQ 793 Query: 604 AISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656 + DI+ M ++L VHDE+V +T V + M Sbjct: 794 GSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENVVQ 853 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL E + Sbjct: 854 --LKVPLVVEIGVGPNW 868 >gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] Length = 881 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 92/664 (13%), Positives = 185/664 (27%), Gaps = 140/664 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI 86 I A++ + + + D + D L +L D ++ + + +G Sbjct: 335 EIVGFAWS-NGNRIYVTDNLS---LLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVG- 389 Query: 87 DIPSKRW-ICTSVLARTNGLPSSLKNAC---LALNFSEH-LTKMEEGKALIARFCKGSID 141 + + S + +E + GK + + Sbjct: 390 --SPNGIQFDSLLACYLLDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGLPEDNER 447 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + +Q K E + L + E L + + G + Sbjct: 448 FYSHLARKVATMQKLDT-----KLSDELVEKGQWTLYK--EMELPLSFILAEMEITGIHV 500 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D ++ ++ A + ++E I + + L + LF G+ ++ ++ Sbjct: 501 DAQRLIAMKSEFATKLHDIEEKIYAQANERF-NLNSPKQLGVILFEKMGLPVIKKTKTGY 559 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L + + IL + + L + SDG++ ++TG Sbjct: 560 STAVDVLEQLKVQAPIVEDILTYRQIAKIQSTYVEGLLRMIQSDGKVHTRYVQT-LTQTG 618 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +R + + Sbjct: 619 RLSSVDPNLQNIP------------------------IRLEEGRKIRQAFVPRNKNWVIY 654 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 +D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 655 SSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRRQAKAVN 714 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ SQN Sbjct: 715 --------------FGIVYGISDYGLSQN------------------------------L 730 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ GV +++ E Sbjct: 731 GITRKQAQQYIDTYFERYPGVKAYMENVVEQAKKDGYVETLYH----------------- 773 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ + + R + +Q + DIL M Sbjct: 774 ---------RRRYLPDLYAKNYNIRSFA---ERTAI------NSPIQGSAADILKIAMIE 815 Query: 617 A------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K ++L VHDE+V E P+ V L +M + A +PL + Sbjct: 816 MNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHAVTLA--IPLVTDSNW 873 Query: 670 AKRY 673 + + Sbjct: 874 GETW 877 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 86/670 (12%), Positives = 180/670 (26%), Gaps = 146/670 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLF---ERI------ 78 A + +E +P +L + + + Sbjct: 378 YCLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAAL 429 Query: 79 -LFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIA 133 L ++ + +I + A ++ +K GK I Sbjct: 430 GLLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIE 489 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + K + ++ N+V + K+ +E + ++ E L Sbjct: 490 QAMKDAPEAFL------NYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLAD 543 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + + G + + + + +A +L++ I + + L + LF + Sbjct: 544 MENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQLGVILFEKLSMPY 602 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ T +L IL + + L ++ DGR+ + Sbjct: 603 GKKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFN 662 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R + Sbjct: 663 QT-ITATGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFVP 697 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ QR Sbjct: 698 KEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRR 757 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + Y + L Sbjct: 758 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 780 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + + L RR Sbjct: 781 -------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSS 833 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 G+ + + +Q + DI+ Sbjct: 834 NFMQ-----------------RSFGERVAM------------------NSPIQGTAADII 858 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663 M ++LTVHDE++ ET +V + M A + L Sbjct: 859 KIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA--VTL 916 Query: 664 KAEGYEAKRY 673 + + + K + Sbjct: 917 EIDAHVGKNW 926 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 94/661 (14%), Positives = 185/661 (27%), Gaps = 129/661 (19%) Query: 26 EQAVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A A +D + + WD ++ L ++L D + + + Sbjct: 334 HHAPFLGIGLATEDTVMFVPWDVAKEW---KALCEWLADPAKEKWVFDGKRDTVGLAWH- 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEH-LTKMEEGKALIARFCKGSI 140 I + + + S L + + + GK + Sbjct: 390 DFAIKGISF-DVYLASYLLNAAESNPTLDSIAAQYAQTRVLSDEEVYGKGAKRL--VPEM 446 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D WQ ++ E E L + E L ++ + +G + Sbjct: 447 DVLSEHVAHKAAAI-WQSVPVLREQLAENEME-----KLLGELEAPLSMVLALMEKQGVK 500 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 ++ + ++++ E + ++ L + I +L G + L LF + ++ ++ Sbjct: 501 VNSERLVQMGEDLDKKLAGLTDQIYELAGGAF-NINSPKQLGEILFDRLSLPVLKKTKTG 559 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 T +L D IL + L++ + ++ + Sbjct: 560 PSTSADVLEKLAPYHPIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQAT-TA 618 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R I +G Sbjct: 619 TGRLSSTDPNLQNIP------------------------IRMEEGRKIREAFIPSEDGWY 654 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + IE R+LA I+ ++ I AF G DI+ T F ++V+ R K + Sbjct: 655 MLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAV 714 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L++ + F+ + + + Q Sbjct: 715 NFGIVYG-----ISDYGLSQNLNITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHV 769 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L+ R + +L Sbjct: 770 TTLLNR---------RRYLPDIRSSNFNLRSFAER------------------------- 795 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + +NT KL +Q E Sbjct: 796 ----------------------TAMNTPIQG---TAADVIKLAMIRMQ--------EA-- 820 Query: 616 NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 + G ++L VHDE+V E PD + L +M S +PLK + + + Sbjct: 821 -LEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVMESALS--LDVPLKVDVSDGRT 877 Query: 673 Y 673 + Sbjct: 878 W 878 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 107/662 (16%), Positives = 189/662 (28%), Gaps = 150/662 (22%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82 AY E+ IT CA+ + V L L E + HNS + Sbjct: 330 AYGEEGEITQCAF-LKSDTVHLV-TEGAEKAVMGLCSL---EGMSLCVHNSKPLFAWLDR 384 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +G + + A +S K + Sbjct: 385 -MGGEARVS--YDAMLAAYLLNPNAS------------------------DYSLKRLQEE 417 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRI 201 + + AWQ ++ +A L L + E L + + + G+ + Sbjct: 418 AGTAAPKLENETAWQAAVLPRVKNWQAASLLANGQRKLLEEMEIPLAQVLARMENIGFLV 477 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + + E + E + L + I + + L LF+ G+ ++ Sbjct: 478 DGESIRVYGERLETEIEALQKQIYEEVGYEF-NINSPKQLGDALFVKLGLPSGKKTKTGY 536 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T IL A +L+L+ + + + + DGR+ +RTG Sbjct: 537 STNAEILEKLRYDHPAVELVLHYRTLTKLKSTYCEGMLKVIGPDGRIHSNFNQTE-TRTG 595 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R +A G LV Sbjct: 596 RISSTEPNLQNIP------------------------VRTELGRELRKFFLAKEGWVLVD 631 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA ++ IKAF + EDI+ T ++ F P + V+ R+ K + Sbjct: 632 ADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKAVNFG 691 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ + + Sbjct: 692 IV--------------YGIG------------------------------AFSLSKDINV 707 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + GV + K++ E Sbjct: 708 SRKEAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVETLFH------------------- 748 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR ++ L ++ R +Q + DI+ M Sbjct: 749 -------RRRYLPELTASNFNLRAFGERVAR---------NMPIQGTAADIIKIAMVRVD 792 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P+ + M S +P+ AE K Sbjct: 793 RRLKRENMRARLILQVHDELIVEAPEDEAEQAARILTEEMEGAVS--LTVPMVAEASVGK 850 Query: 672 RY 673 + Sbjct: 851 TW 852 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 102/677 (15%), Positives = 205/677 (30%), Gaps = 136/677 (20%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72 Q + + + I A+++ ++ V D + DL + E H Sbjct: 312 LQDSKSIAFYPLIYEGEIKKIAFSFGNDTV-YIDGFQ----IKDLKEIFEKEKFEFTTHE 366 Query: 73 SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK-NACLALNFSEHLTKMEEG 128 + ++ GI+ +++ T+++A S L L + G Sbjct: 367 IK-DFLVKLSYKGIECK-SKYMDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFG 424 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 K + + + D + + LF K KRL L + E L Sbjct: 425 KGRDKKKLEEIGEDILADYICS---RCVHLFDLREKLMNFIEEMDMKRL--LLEIEMPLV 479 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + +++ G+ +D +++ +L + I ++ + I K + L +LF Sbjct: 480 EVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEK 538 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + ++ ++ T +L + I+ + ++ + + R+ Sbjct: 539 LNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQLTKLKSTYIDGFLPLMDENNRV 598 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 599 HSNFKQMV-TSTGRISSTEPNLQNIP------------------------IREEFGRQIR 633 Query: 366 SCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 I +G +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++K Sbjct: 634 RAFIPRTKDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEK 692 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ E R + K + G+ S Sbjct: 693 VTPEMRRVAKAVNF--------------GIIYGISDYGLS-------------------- 718 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 K+ + + +++GV + + + ++ Sbjct: 719 ----------RDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIMN---- 764 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 RR ++ T SQ R +Q Sbjct: 765 ----------------------RRRYIPEINSRNF---TQRSQAERLAMNAP------IQ 793 Query: 604 AISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656 + DI+ M ++L VHDE+V +T V + M Sbjct: 794 GSAADIIKMAMVRVYNDLEKLKLKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENVVQ 853 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL E + Sbjct: 854 --LKVPLVVEIGVGPNW 868 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 91/653 (13%), Positives = 182/653 (27%), Gaps = 148/653 (22%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIPSKRWIC 95 EP ++W + + ++ + E + ++ L + ++I Sbjct: 400 PEPPRVWVVDDPGPIFAEAKPFWSSEKHRKLF----YDVKSLWLLARQEDVEIQGID-GD 454 Query: 96 TSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + A SL L + + GK ++ + + T A Sbjct: 455 GLIGAYLLDPLANNYSLARLAHELIDWKISPE--AGKQVLPAEDAALAVAGLFHLTPAME 512 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + RDVE L + ++ G +++ ++ + Sbjct: 513 AKLGEESLGKLYRDVEL----------------PLAPILGSMEWIGIKVNPKVLQDMAGE 556 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN 269 + + +KL +I +L G + T LF G+ T +L + Sbjct: 557 LNSDIQKLQAEIHELA-GETFNINSTQQFGKILFEKLGLPVIKRTKTGYSTDVEVLEELS 615 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 +L + L + +GR+ + + TGR S Q Sbjct: 616 DRHPIVPKVLEFRQLMKLKSTYVEGLLPLIDGPEGRIHTSFNQSV-TATGRLSSTEPNLQ 674 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P +R IA G L+ AD + IE R Sbjct: 675 NIP------------------------VRLEQGRHIRKAFIAPEPGWTLLAADYSQIELR 710 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA ++ + AFA +DI+ T ++ F+ P+ V++E R K + + Sbjct: 711 ILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRAKAVNFGIV------- 763 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ S + + Sbjct: 764 -------YGISDFGLS------------------------------RDLGVTRGEAKEYI 786 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + ++ GV + + RR Sbjct: 787 EGYFRRYHGVRGYIDRIIAEARQQG--------------------------FVTTLLGRR 820 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------G 621 D+ +R+ +Q + DI+ M K Sbjct: 821 RRLPDLFVKN---------KIRQNFGERTAMNTPIQGTAADIIKAAMVKIPKALKDHGLK 871 Query: 622 YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ V + +M K +PL + + + Sbjct: 872 TRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIE--ISVPLTVDVKKGANW 922 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909] Length = 876 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 104/663 (15%), Positives = 201/663 (30%), Gaps = 131/663 (19%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFK 81 Y + A I + + + V + + +L+Q+L D+ + +++ + + Sbjct: 328 YLKDA-ILKFGFYTNHQHVVI--NADDVKDYKNLVQWLEDKNTTKIVYDAKKTY---VSA 381 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 LGI+I + + + + S+ + ++ K I F KG Sbjct: 382 HRLGINIENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITVFGKGKKH 436 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P + H+ + +++ E + ++ L D E L + + + G Sbjct: 437 HIPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYT 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D++ + +++ I ++ L +I + G + L + LF + ++ ++ Sbjct: 497 DINDLKEMEFEIQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGY 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L D IL S + L + +S D R+ A +TG Sbjct: 556 STAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R S ++ Sbjct: 615 RLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSKDSVIL 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 651 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF 710 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ SQ+ Sbjct: 711 --------------GIVYGISDYGLSQS------------------------------LG 726 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A GV Q D+ + + RR Sbjct: 727 ITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL--- 783 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ M Sbjct: 784 --------------RSFAERTAMNT------------------PIQGSAADIIKLAMVKF 811 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670 ++ ++L VHDE++ E P + + +M + +PLK + Sbjct: 812 SEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYG 869 Query: 671 KRY 673 + Sbjct: 870 ATW 872 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 86/669 (12%), Positives = 180/669 (26%), Gaps = 146/669 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLF---ERI------- 78 A + +E +P +L + + + Sbjct: 379 CLGAAISTGEEETFFI--KAGENLPAKQILSMFTASEA------ASYATLDLKPQLAALG 430 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIAR 134 L ++ + +I + A ++ +K GK I + Sbjct: 431 LLERQVNGNIGLSNLFDGVLAAYLLNPLKNEYPYEDIAKDYMGQMIPSKADLLGKLTIEQ 490 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 K + ++ N+V + K+ +E + ++ E L + Sbjct: 491 AMKDAPEAFL------NYVCYMAYVAQASKKTLETDLKEEGMDHLFTEIEMPLVFTLADM 544 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 + G + + + + +A +L++ I + + L + LF + Sbjct: 545 ENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQLGVILFEKLSMPYG 603 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T +L IL + + L ++ DGR+ + Sbjct: 604 KKTKTGYSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGLVNYIAKDGRIHTSFNQ 663 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P +R + Sbjct: 664 T-ITATGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFVPK 698 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ QR Sbjct: 699 EGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRN 758 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y + L Sbjct: 759 AKAVNFGIVYG-----ISSFGLSQDLS--------------------------------- 780 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + + + + L RR Sbjct: 781 ------ISKKEAAEYIERYFETYPKIKTFLDGLVAEAKEKGYVTTMFGRRRPVPELSSSN 834 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 G+ + + +Q + DI+ Sbjct: 835 FMQ-----------------RSFGERVAM------------------NSPIQGTAADIIK 859 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664 M ++LTVHDE++ ET +V + M A + L+ Sbjct: 860 IAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAADLA--VTLE 917 Query: 665 AEGYEAKRY 673 + + K + Sbjct: 918 IDAHVGKNW 926 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 86/663 (12%), Positives = 180/663 (27%), Gaps = 145/663 (21%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 +A ++ L R + ++ +L + + N+ + + + LGI + + Sbjct: 341 GFALGNDEQWLVSRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR-LGISLDGIDF 399 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + + + + L + + + Sbjct: 400 -DLLLASYLLNTNDNSNDLGK-LAHEH------------GYDDVQTDEEVYGKGAKRTIP 445 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDL 203 QLF ++ A +L +L + E L + + G +D Sbjct: 446 DDDQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVDA 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + + +++E I + + T L LF + ++ ++ T Sbjct: 506 QTLKNMGSKLTERLTEIEEQIYQEAGEEF-NINSTKQLGKILFEKLKLPVIKKTKTGYST 564 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +L + IL S + L + + S D ++ ++TGR Sbjct: 565 AVDVLEKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHTRYLQT-LTQTGR 623 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G ++ Sbjct: 624 LSSVDPNLQNIP------------------------VRLPEGRLIRQAFVPSHEGWQIFS 659 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMEL 437 +D + +E RVLA I G+ + F NGEDI+ +T + F+ P ++ + R K + Sbjct: 660 SDYSQVELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVN- 718 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ +Q + Sbjct: 719 -------------FGIVYGISDYGLAQRIH------------------------------ 735 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + + V D E RR Sbjct: 736 VSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPDINSKSFSR--- 792 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ M Sbjct: 793 --------------RSFAERTAMNT------------------PIQGSAADIIKIAMIKM 820 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 ++L +HDE+V E P + L +M +PLK + Sbjct: 821 QDELEKRQLKAKMLLQIHDELVFEAPKEEIPVLSKLVPDVMDSAVK--LSVPLKVDSKYG 878 Query: 671 KRY 673 + Sbjct: 879 DTW 881 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 90/651 (13%), Positives = 180/651 (27%), Gaps = 134/651 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A +E + + + DE + + HN + I L DI K Sbjct: 341 IAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396 Query: 93 W-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPYDCTRA 150 + + + S + + G + + + Sbjct: 397 YTHDSEIAEYILNSTES------NYDINNISNTYFSRGYKDLEELLGKGKKKIKFSDLKY 450 Query: 151 NHVQAWQLFGE---YCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + + + F Y RDV+ + + + E L + ++ G R D ++ Sbjct: 451 DELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIGIRTDNAIL 510 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG---IDLVDMSEGTLKS 263 ++ + + L+ DI + + L + LF G + T Sbjct: 511 DEIGIDLDNKILNLENDIYEKAGEEF-NINSPKKLGLILFDKLGYPVLKKTKTGYSTNAD 569 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSG 322 +L D +L + + L E ++ + G + + TGR S Sbjct: 570 VLEKLKKDGDIIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFNQT-ITSTGRISS 628 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R ++S G LV AD + Sbjct: 629 TNPNLQNIP------------------------IKTDEGKLIRKAFLSSEGCVLVDADYS 664 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ ++ I AF N +DI+ T AK F + V+ R+ K + + Y Sbjct: 665 QIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVYG 724 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L+ + Sbjct: 725 -----ISDYGLSQNLN---------------------------------------IPRKL 740 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + G+ + + ++ Sbjct: 741 AQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTILN----------------------- 777 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR ++ + + R +Q + DI+ M + Sbjct: 778 ---RRRYIPELSAKNFNIRSFG---ERIAI------NTPIQGSAADIIKIAMVKVYRALK 825 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666 ++L +HDE++ + + +V L +M + LK + Sbjct: 826 ENNLKSKLILQIHDELIVDAREDEVETVKKLMRNIMENAVEMV--VKLKVD 874 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 98/678 (14%), Positives = 189/678 (27%), Gaps = 148/678 (21%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSLF 75 VG+ E + + + E + + S L L + + + F Sbjct: 438 VGIKLIMENKSLVGISVYYGSEASFIIPCEGFITPDFLTSKLNGLLEKKITLAI-----F 492 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + L + ++ +S + K E Sbjct: 493 DIKKYLPYLNAN-EESPCFDVTIAGYLLEPDAS------TYEYQTIAEKYLE------LD 539 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ER 185 + + + + + + ++ L+ L E Sbjct: 540 LPSEKEVFSGQTYASLSLLDQDQYKKAACYESYVAHHIYPVLLKLLSERGLLPLFAGIEM 599 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + RG R+D + + + + +L++ I +L + L L Sbjct: 600 PLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGVEF-NINSPKQLGEIL 658 Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F G+ ++ T +L + LIL + + L V D Sbjct: 659 FQRLGLSYGKKTKTGYSTSAEVLEKLSSEHPVIKLILQYRQLTKLKSTYADGLVSYVEGD 718 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ GT A TGR S QN+P Sbjct: 719 GRIHGTFNQTIA-ATGRLSSTEPNLQNIP------------------------IRMELGR 753 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I +G + AD + IE R+LA ++ + I+A+ +DI+ T ++ F+TP D Sbjct: 754 KIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVFHTPFD 813 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ QR+ K + + Y + Sbjct: 814 EVTSAQRSNAKAVNFGIVYGISSFSL---------------------------------- 839 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + E + + GV L E +E G + Sbjct: 840 ----------GQDLDITRKEAEEYINKYFMTYPGVKTYLDGLIEE----GKETGVVKTLY 885 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 R ++ +A R + + Sbjct: 886 ----------------------GRIRPVPNLTNSNFMKRSAE---ERIAM------NSPI 914 Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655 Q + DI+ M + K ++L +HDE++ ET ++ V + M + Sbjct: 915 QGTAADIMKLAMIHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA 974 Query: 656 SWAKGLPLKAEGYEAKRY 673 S +PL+ E + Sbjct: 975 S--LSVPLEVEVANGNNW 990 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 99/638 (15%), Positives = 193/638 (30%), Gaps = 128/638 (20%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 + +Y DE + V+ + + + LGI+I + ++ S Sbjct: 250 PDQKFVDNFKKYFEDENINKVSFDIKEDI-VLFNKLGIEIN-FPYDDIMLMHYLIDPSRS 307 Query: 109 LKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L + + GK + K + + + Sbjct: 308 SYDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSS--IINAIEDSLDIL 365 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D +++ E L + + G+ D + + K+++ ++ E + L++ I Sbjct: 366 TDKLKELSMYELYKDC---EIKLSKVLADMEITGFVCDKNELEKIKDEVSVELEGLEKII 422 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 +L + L + LF + ++ ++ T +L I Sbjct: 423 YELAGSEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERY 481 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L +L E + DGR+R T + + TGR S QNLP Sbjct: 482 REMYKLKSTYLESLEECIDGDGRIRSTFKQNV-TATGRLSSTEPNLQNLP---------- 530 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R A N K L+ AD + IE RVLA +A + +A Sbjct: 531 --------------IRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEA 576 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F++ DI+ T ++ FNTPID+V+K QR+ K + + Y L++ Sbjct: 577 FSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYG-----ISDYGLSQNLNIP- 630 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + + + + + Sbjct: 631 --------------------------------------RKRAKEYIENYLNTYPQIKKYM 652 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 KD+ + + +RR ++ + Sbjct: 653 KDIVKKAKEEG--------------------------FVNTIFNRRRYVPEINSKNFNVR 686 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 + ++ +Q + DI+ M N+ +N IVL +HDEI+ E Sbjct: 687 SFGERV---------ALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIE 737 Query: 636 TPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672 + S M + + +PL + Sbjct: 738 ASKKDLQKAKEILKSSMEEAVN--LKVPLLVDIDSGDS 773 >gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026] Length = 886 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 87/663 (13%), Positives = 192/663 (28%), Gaps = 141/663 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGI- 86 I + ++ ++ + + L + L D+T+ N F+ + +G+ Sbjct: 342 IEGFSLKVGNK----IYVSKDPVLLQENPLHKMLEDKTIKK---NV-FDIK--RTYVGLH 391 Query: 87 --DIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 D+ ++ + + ++ + + K + + KG + Sbjct: 392 RLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAV 447 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P D H+ A E K + + ++ E + + + G +++ Sbjct: 448 PNDNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEA 507 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 ++ +L A + ++L+ I + + L LF G+ + ++ T Sbjct: 508 SVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYST 566 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL+ + + L + + DGR+ + TGR Sbjct: 567 SVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLDCIQPDGRIHTRYLQT-LTTTGRL 625 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVV 378 S QN+P +R + +G Sbjct: 626 SSVDPNLQNIP------------------------TKTEEGKQIRKAFVPSTKDGYIF-S 660 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 D + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + Sbjct: 661 CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF 720 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 721 GIVY-----GISDYGLSKNL---------------------------------------G 736 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + ++ + + + + Sbjct: 737 ISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH------------------ 778 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ + + R + +Q + DI+ M N Sbjct: 779 --------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINM 821 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K +VL VHDE++ + P ++ + +M +PL A+ Sbjct: 822 QKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSAVK--LDVPLIADSNWG 879 Query: 671 KRY 673 + Sbjct: 880 HNW 882 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 93/673 (13%), Positives = 187/673 (27%), Gaps = 136/673 (20%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL----QYLRDETVMCVAHNSL 74 VG+ E+ I AW +E +++ Q + D L Q + + + N Sbjct: 322 VGIELLEEKGQILGLGLAWGEEKTEVYSILPQGFVTEDYLIEKTQEFCQQGKLIASLNIK 381 Query: 75 FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKA 130 + + + + A + + K GK Sbjct: 382 ----AMLRYMDLK-SHNDMFDAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGK- 435 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + + + ++ A+ +E K L +D E L Sbjct: 436 ---LSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELY--TDMEMPLLFT 490 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ++ + + + E + + L+++I + + L + LF Sbjct: 491 LADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKLE 549 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 + ++ T +L IL + + L+ ++ DGR+ Sbjct: 550 LPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQLTKLKSTYADGLANYIAEDGRIHS 609 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + TGR S QN+P +R Sbjct: 610 TFNQT-ITATGRISSTEPNLQNIP------------------------VRTELGRLLRKV 644 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I +G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ Sbjct: 645 FIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTPL 704 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR K + + Y + L Sbjct: 705 QRRNAKAVNFGIVYG-----ISSFGLSQDLS----------------------------- 730 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + +++ + + L E RR Sbjct: 731 ----------ISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKEKGYVSTLFHRRRPVPEL 780 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + G+ + + +Q + Sbjct: 781 KSSNFMQ-----------------RSFGERVAM------------------NSPIQGTAA 805 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKG 660 DI+ M K +VL VHDE++ ET V + M + Sbjct: 806 DIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAAH--LS 863 Query: 661 LPLKAEGYEAKRY 673 + L+ + + + + Sbjct: 864 VALEIDMHTGENW 876 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 198/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] Length = 886 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 91/636 (14%), Positives = 161/636 (25%), Gaps = 129/636 (20%) Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERI----LFKKTLGIDIPSKRWICTSVLARTNGLPS 107 +++ +L DE V ++ + G+ + A Sbjct: 362 EAAAEVRAWLADEQVPKRG----YDLHRADLVLFWH-GVAFAGAE-HDVQLAAYLLDPTE 415 Query: 108 S---LKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 S + + E GK +F D R L + Sbjct: 416 SDQTISGLAAKYQLPQVPGDDEVYGKGA--KFKVPEPDVLSRHLARKADALLRILPLQRE 473 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +LF L E L + + +G ++ + + +L + KL Sbjct: 474 DLAKYEMEKLFYEL------EMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVAR 527 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I ++ + T L LF G+ ++ ++ T +L IL Sbjct: 528 IYEIAGQEF-NINSTKQLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHEIVQFILE 586 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L + +S G++ + A TGR S QN+P Sbjct: 587 YRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIA-ATGRLSSQYPNLQNIP-------- 637 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + G ++ AD + IE RVLA I+G+ Sbjct: 638 ----------------IRLEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGDPGL 681 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 +AF + DI+ T F D+V R K + + Y L+ Sbjct: 682 QEAFLHDMDIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYG-----ISDYGLSQNLN 736 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + F ++ + + L+ R + Sbjct: 737 ITRKEAARFIEQYFNAFQGVRRYMDEIVKAAKRDGYVKTLLER---------RRYLPEIN 787 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 +L +L + + Sbjct: 788 ASNFNLRSFAERTAMNTPIQGTAADII---------------------KLAMVRMDEELH 826 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 L M L VHDE+V E P Sbjct: 827 KHG----------------------------LKSRML----------LQVHDELVFEVPP 848 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M K +PLKAE + Sbjct: 849 EELEFMSKLVPETMGKALE--LSVPLKAEVSSGLNW 882 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + + +L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + + +L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 IVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGREF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN+ + Sbjct: 715 -------------YGISDYGLSQNL------------------------------GITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + + +L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQKDIALKSDAFKDWLADGEMRKHTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 388 IQGVDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELK 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + E ++ ++ E L + + +G ++D + + Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4] gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4] Length = 934 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 98/658 (14%), Positives = 175/658 (26%), Gaps = 149/658 (22%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR 92 A DD L D A + L+D + H + T G + Sbjct: 406 GLAADDNTALLLDLNAPEATA--IRDALKDPALPKTTH----DLKSLLHTAGQRGLEIAN 459 Query: 93 W-ICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + L + + S + P Sbjct: 460 VAHDVMLYSYLINPTHGSHKLADVAARMGQSITPL---------------VKNQTPPATA 504 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A + E EL L P + + L + + G RID ++ Sbjct: 505 LPEAASAIHRLAPALRIQAE-EGEL---LKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRD 560 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKS 263 + +A + L E I ++ + L LF + + T + Sbjct: 561 MSSKLAVDMDALAERIYAMSGHRF-NINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQD 619 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L A L+L + L + +GR+ T G + TGR S Sbjct: 620 VLEELAAHHEAPALVLEYRQLAKLRSNYTEQLPQLADREGRVHTTFNQVG-TATGRLSST 678 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R+ I + G L+ AD + Sbjct: 679 NPNLQNIP------------------------TRTALGREIRAAFIPAEGNVLLSADYSQ 714 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A + + + A+ G+DI+ T A+ F + + KE R K + + Y Sbjct: 715 IELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVY-- 772 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 773 ------------GISPFGLAAQ------------------------------LGIPQGEA 790 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 +L + +R ++ GV + + S + Sbjct: 791 KLYIERYRERYAGVTAF-------IERTISDTRSTG-------------------KVSTL 824 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618 R D+ + +Q + D++ M Sbjct: 825 FGRTRPIPDIGSRNPNQRGFAERT---------AVNTPLQGTAADMIKIAMLKIDAALTE 875 Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674 K + L VHDE++ + P V L L M S +P+ AE + +R Sbjct: 876 RKLATRMTLQVHDELLFDAPVGETEEVAALVKLEMEGVVS--LSIPIVAEVGKGPNWR 931 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 90/671 (13%), Positives = 174/671 (25%), Gaps = 147/671 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNS 73 K + +A QA I + + + + +L + + S Sbjct: 330 TKNTLPLFAGQADIGGIGLCYGADKIFCIRADGDITAEYLLRELKEV---SGSVQTF--S 384 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-LTKMEEGKALI 132 +F+ + + ++ A + + L Sbjct: 385 MFDIKESMQYFTVA-EPSACFDVTIAAYLLNP------------LKNDYTYEDVAREQLG 431 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 D + ++ E E +D E L Sbjct: 432 LLLEDKVEDHVKVCYEAYTA---YASVEPLRQKLKETQME-----HLFTDIEMPLVFTLY 483 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G RI+ + + E + + ++L+++I + + L + LF G+ Sbjct: 484 DMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYEAAGEEF-NINSPKQLGVILFDKMGLK 542 Query: 253 LVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T +L IL + + LS +S DGR+ G Sbjct: 543 GGKKTKTGYSTAADVLDKLAPDYPVVAQILEYRQLTKLKSTYADGLSNYISGDGRIHGKF 602 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R I Sbjct: 603 NQT-ITATGRISSTEPNLQNIP------------------------VRMELGRLIRKVFI 637 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 +G + AD + IE RVLA +G++ I A+ +DI+ T ++ F+ P +V+ QR Sbjct: 638 PEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGEVTDLQR 697 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y + L Sbjct: 698 RNAKAVNFGIVYG-----ISSFGLSQDLS------------------------------- 721 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + G+ D + RR Sbjct: 722 --------ITRKEAAKYIDDYFKTYPGIKLFLDDTVAHAKEMGYVVTLFGRRRPVPELSS 773 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 G+ + + +Q + DI Sbjct: 774 SNFMQ-----------------RSFGERVAM------------------NSPIQGTAADI 798 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLP 662 + M + +VL VHDE++ E V + M S +P Sbjct: 799 IKIAMIGVNRRLKEKHMRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAAS--LEVP 856 Query: 663 LKAEGYEAKRY 673 L+ + + + Sbjct: 857 LEIDMHTGDNW 867 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 200/691 (28%), Gaps = 133/691 (19%) Query: 2 SKLFIDI-ETRSPQPLPKVGVWAYAEQAVITL----------CAYAWDDEPVKLWDRTEQ 50 ++ DI T + I + +D E + D Sbjct: 298 KQVSFDILPTFEYVDFNH--LDEAVIHFEIDGSNYLKDDILKFGF-YDKERYIVVDADNI 354 Query: 51 SAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 P +L+++L +E V +++ F + L I+I + + + + Sbjct: 355 KDYP-ELIKWLENENSKKVVYDAKKTF---VIAHRLNINIQNI-VFDAMLASYIIDPSRT 409 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + + K ++ + KG P H+ + + K +E Sbjct: 410 IDDVYSVVTNYHQTY----VKEDVSIYGKGKKRHVPDTEILNTHIASITKSIDAVKPLME 465 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E +++ L D E L + + + G D++ + +Q+ + ++ + L + I Sbjct: 466 KELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAA 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L + LF + ++ ++ T +L + IL + Sbjct: 526 GEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLQNEHPIINDILEYRQLA 584 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + +S+D R+ A +TGR S QN+P Sbjct: 585 KLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDPNLQNIP-------------- 629 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R S ++ AD + IE RVLA I +D +AF + Sbjct: 630 ----------IRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIH 679 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G+DI+ T K F ++V+ R K + + Y L++ + Sbjct: 680 GQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYG-----ISDYGLSQSLNITRKEA 734 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + + L+ R + +L Sbjct: 735 KIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNL 785 Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + SA + + + + Sbjct: 786 RGFAERTAMNTPIQGSAADIIKLAMVEFDKQ----------------------------- 816 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 VQ S K ++L VHDE++ E P + Sbjct: 817 ------------------VQHTS-----------YKAK--LLLQVHDELIFEVPKSEVEE 845 Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 846 FSLFVEDIMEHALD--LDVPLKVDSNYGPTW 874 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 94/628 (14%), Positives = 179/628 (28%), Gaps = 146/628 (23%) Query: 59 QYLRDETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L+ E+V V ++ L + + + S + Sbjct: 352 EILKSESVKIV-----YDLKNIFHELYLENTDNIRNCEDVMIASYVLDSTRS------SY 400 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + + + + ++ + +L Sbjct: 401 ELETLFISYL---------------NTDLAAVKKDKKVTSVILLKRLWDELSSLIDLNSC 445 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 ++ ER L + + G+++D D +L+ + I + L++ I ++ G + Sbjct: 446 QFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIA-GEWFNIN 504 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L LIL+ + Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQ 564 Query: 294 TLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L +A++ GR+ T G + TGR + QN+P Sbjct: 565 GLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP--------------------- 602 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T Sbjct: 603 ---VKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQT 659 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ F ID V+ E R+ K + + G+ Sbjct: 660 AAEVFGVDIDDVTPEMRSQAKAVNFGIV--------------YGISDY------------ 693 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 A K+ + ++ V + ++ + Sbjct: 694 ------------------GLARDIKISRKEAAEFINRYFERYPKVKEYLDNIVKFARDNG 735 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR D+K A + R Sbjct: 736 YVLTLFN--------------------------RRRYVKDIKSAN---RNARNYAERIAM 766 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + +Q + DI+ M + I+L VHDE++ E P V Sbjct: 767 ------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKE 820 Query: 647 LCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M A +PL E E + Sbjct: 821 IVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 104/654 (15%), Positives = 198/654 (30%), Gaps = 130/654 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A +++ +Y + + V+ + + +LF K LGI+I Sbjct: 351 IAIKTSSSKTYIYN--PDEKFVEKFKKYFEADNIKKVSFDIKEDIVLFDK-LGINISL-P 406 Query: 93 WICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + T ++ S + L + + GK + K Sbjct: 407 YDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVENEEDLLGKGKSKKSYKDLDSDNLGKY- 465 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A+ V A + + + +E ++ E L + + G+ D + + K Sbjct: 466 LASIVNAIEDSLDILTQKLE-ELSMYDLYKDC---EIKLSKVLADMEITGFICDKNELEK 521 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +++ ++ E L++ I +L + L LF + ++ ++ T +L Sbjct: 522 IKDEVSLELGDLEKIIYELAGSEF-NINSPKQLSKILFEDLKLPIIKKTKTGYSTNAQVL 580 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + I L +L E + DGR+R T + + TGR S Sbjct: 581 EKLRKKHPIIEKIERYREMYKLKSTYLESLEECIDEDGRIRSTFKQNV-TATGRLSSTEP 639 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QNLP +R A +GK L+ AD + IE Sbjct: 640 NLQNLP------------------------IRTEEGRKIRKAFKADDGKVLIDADYSQIE 675 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A + +AF+ DI+ T ++ F+TPID+V+K QR+ K + + Y Sbjct: 676 LRVLAHLANDKKMQEAFSKDIDIHTKTASEVFSTPIDEVTKLQRSEAKAVNFGIIYG--- 732 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 L++ + Sbjct: 733 --ISDYGLSQNLNIP---------------------------------------RKRAKE 751 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + + + KD+ + + Sbjct: 752 YIENYLDTYPEIKKYMKDIVKKAKEDGYVNTIFN-------------------------- 785 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG 621 RR ++ + + ++ +Q + DI+ M N K Sbjct: 786 RRRYVPEINSKNFNVRSFGERV---------ALNTPIQGTAADIIKFAMINSYQNLQKAK 836 Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672 IVL +HDEI+ E + S M +PL + + Sbjct: 837 IDAKIVLQIHDEIIIEASKKDLEKAKEILKSSMQDAVD--LKVPLLVDIDSGES 888 >gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries] gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries] Length = 864 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A I + A+D E E Q L ++V+ + H + L Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + +++ + SL + Sbjct: 394 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARM 437 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + N + +LF Y ER L + + + G Sbjct: 438 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 479 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253 +D +++ +L + + L+++I L + L LF G+ + Sbjct: 480 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCTF-NVASARQLGKLLFERMGLSSSAKKM 538 Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 S T +L + D +L S ++ L V + + T Sbjct: 539 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 598 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P +R +A Sbjct: 599 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 634 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KLV AD + +E +++A IAG AF+ G+DI++ T + F E R Sbjct: 635 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 692 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y + Sbjct: 693 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 712 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + + + + Sbjct: 713 ----GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 754 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ S + + T R +Q + D++ + Sbjct: 755 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 793 Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 M N G I+L VHDE++ E P++ V L +M ++ +PLK + Sbjct: 794 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 850 Query: 669 EAKRY 673 + Sbjct: 851 VGSSW 855 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143 + + + A + K+ E + GK + Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R HV + ELF L E L + + +G ++D Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L IL+ + L + V D ++ ++TGR Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G + Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 A + + GV + +D+ + + R +P + R Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 885 Query: 672 RY 673 + Sbjct: 886 TW 887 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143 + + + A + K+ E + GK + Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R HV + ELF L E L + + +G ++D Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L IL+ + L + V D ++ ++TGR Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G + Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 A + + GV + +D+ + + R +P + R Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 885 Query: 672 RY 673 + Sbjct: 886 TW 887 >gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ST398] Length = 876 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 96/684 (14%), Positives = 189/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLEEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVAFITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + V Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKVFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1] gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1] Length = 504 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 81/613 (13%), Positives = 161/613 (26%), Gaps = 129/613 (21%) Query: 77 RILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL-ALNFSEHLTKMEEG-KALI 132 I+ + G + T + L + L++ G K Sbjct: 1 MIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEIYLHYQTIHIDELIGPKGKN 58 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + + D P D A + E +RL D E L + Sbjct: 59 QKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLF--YDIEMPLVPVLV 113 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI- 251 I G +D + + + + ++++++I +L G + + LF I Sbjct: 114 NIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA-GETFNIASPKQVGEVLFDKLKIV 172 Query: 252 DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 + ++ T + +L + IL ++ L ++ GR+ Sbjct: 173 EKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVH 232 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 + + TGR S QN+P +R Sbjct: 233 TSFNQTV-TATGRLSSSNPNLQNIP------------------------IRDENGKEIRK 267 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I G AD + IE R++A ++ + I AF + DI+ T AK + + V Sbjct: 268 AFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDS 327 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + R K G+ + ++ Sbjct: 328 DMRRKAKTAN--------------FGIIYGISVFGLAER--------------------- 352 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + + + GV + Sbjct: 353 ---------MNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH------- 396 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R+ D+ + + + +Q + Sbjct: 397 -------------------RKRFLPDINSRNAVVRGYAERN---------AINAPIQGSA 428 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 DI+ M + ++L VHDE+ P V + ++ Sbjct: 429 ADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE-EMEKAYRMH 487 Query: 661 LPLKAEGYEAKRY 673 +PLKA+ K + Sbjct: 488 VPLKADCGWGKNW 500 >gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463] Length = 650 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 185/664 (27%), Gaps = 144/664 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + +D+ + + + + L DE + N F+ + LG Sbjct: 106 VGFSLKINDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLG 157 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + ++ + ++S GK + Sbjct: 158 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 216 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + ++ N +++ + +D E L E + + G ++ Sbjct: 217 LFNHLASKVNAIESLKKTLLEKLKDHE-----QDALFDTI--EIPTARVLARMEMNGMKV 269 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + +++LQ A + K+L++ I G + L LF G+ ++ ++ Sbjct: 270 EASTLIQLQNEFAVKLKELEDKIY-GQAGEKFNLNSPKQLGHILFEKLGLPVIKKTKTGY 328 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ + + L + + DGR+ + TG Sbjct: 329 STAVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYLQT-LTATG 387 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 388 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 423 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K + Sbjct: 424 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 483 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ S+N+ Sbjct: 484 F--------------GIVYGISDYGLSKNL------------------------------ 499 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + + + Sbjct: 500 GISRKRAQEFIDNYFEQYPQIEDYMNKAVQEARDKGYAETIMH----------------- 542 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ T + R + +Q + DI+ M N Sbjct: 543 ---------RRRYLPDIHAK---KYTVRAFAERTAI------NSPIQGSAADIIKIAMIN 584 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K +V+ VHDE++ + P ++ + +M +PL A+ Sbjct: 585 MQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 642 Query: 670 AKRY 673 + Sbjct: 643 GHNW 646 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143 + + + A + K+ E + GK + Sbjct: 388 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 444 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R HV + ELF L E L + + +G ++D Sbjct: 445 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 498 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 499 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 557 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L IL+ + L + V D ++ ++TGR Sbjct: 558 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 616 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G + Sbjct: 617 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 652 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K + Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 712 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 713 IV--------------YGISDYGLSQN------------------------------LGI 728 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 A + + GV + +D+ + + R +P + R Sbjct: 729 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 784 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 785 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 813 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 814 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGP 871 Query: 672 RY 673 + Sbjct: 872 TW 873 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 99/661 (14%), Positives = 196/661 (29%), Gaps = 133/661 (20%) Query: 28 AVITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 A I ++ D S ++L DE + ++ + K Sbjct: 338 ADIQGFGIQNENG-CYFIPSDVALGS---EAFTKWLADEDMRKYTFDAKRAIVALKW-KD 392 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 ++I + + A + + + K+ + KG+ + P Sbjct: 393 VEIKGIDF-DLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPE 447 Query: 146 DCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 A H A ++ + + E ++ ++ E L + + +G ++D + Sbjct: 448 QGVVAEH-VARKVHVLFDVQKTFVEELEKNEQYELFTELEMPLARVLAEMEVKGVKVDTE 506 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + + + +A K++++ I +L + L + LF + ++ ++ T Sbjct: 507 RLRNMGDELAGRLKEMEQKIYELAGTEF-NINSPKQLGVVLFENLNLPVIKKTKTGYSTS 565 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRW 320 +L IL+ + L + V D ++ ++TGR Sbjct: 566 ADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRL 624 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +R I S G + A Sbjct: 625 SSTDPNLQNIP------------------------IRLEEGRKIRQAFIPSTEGWVMYAA 660 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 661 DYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGI 720 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ SQN + Sbjct: 721 V--------------YGISDYGLSQN------------------------------LGIT 736 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A + + A GV + ++ + S R +P + R Sbjct: 737 RKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYV--STLLNRRRYIPEITSRNFNL--- 791 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---- 615 + + +NT +Q + DI+ + M Sbjct: 792 ------------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMAN 821 Query: 616 NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 822 RLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSSGPT 879 Query: 673 Y 673 + Sbjct: 880 W 880 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGAMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLEKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + + AF DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + +R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLKRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 91/662 (13%), Positives = 178/662 (26%), Gaps = 136/662 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + E + + L++E +++ E + L IDI Sbjct: 329 EIIGVGILVGA-HTFVIPPDEIAQ-NESFINALQNEDTKKYVYDAK-ETKVLFSRLDIDI 385 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPP 144 C + + + + + +M GK + + Sbjct: 386 KGIE-HCVMLASYLLDPALKIIDVAQSAQMQGIYYVESDEMIFGKGA--KMHIPERTNLF 442 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + + K + EL L E L L+ + +G +++ Sbjct: 443 KHIASEVNAIHEVSALQIRKLNELKQLELLTAL------ELPLSLVLADMEMQGIKVNRQ 496 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----G 259 + ++Q+ I +L I + + L + LF +D + Sbjct: 497 TLQEMQQEIQSRLDELITRIHEHAGSTF-NINSPKQLGVVLFEDLKLDSPKKKKTKTGYS 555 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL S + L + + D ++ A +TGR Sbjct: 556 TAVDVLESLAGKHPIIEDILLYRTLSKLQSTYVEGLQKLIGDDDKIHTRFNQVIA-QTGR 614 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + + Sbjct: 615 LSSIDPNLQNIP------------------------VRLDEGRKIRKAFVPSEPNSVIFA 650 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA I G+ ++AF G DI+ T K FN ++V+ + R K + Sbjct: 651 ADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNF- 709 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ SQ+ + Sbjct: 710 -------------GIVYGISDYGLSQS------------------------------LGI 726 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + V D+ + ++ RR + Sbjct: 727 TRKDAQAFIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRG-- 784 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + + +NT +Q + DI+ M + Sbjct: 785 ---------------FAERTAMNT------------------PIQGSAADIIKLAMVHYN 811 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P + + +M +PL+ E + Sbjct: 812 EQVKETDFKAKLLLQVHDELIFEVPKDELEAFSLFVKHVMENALE--LKVPLEVEYDSGE 869 Query: 672 RY 673 + Sbjct: 870 SW 871 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] Length = 892 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 91/672 (13%), Positives = 189/672 (28%), Gaps = 118/672 (17%) Query: 12 SPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 S + E A I + DD+ L + L + V Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIDDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + + + + LG+ + + +++ + + L +H E Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKINF-DLLLVSYLLDNSENSNDLG--LLAQQHEYYDVES 438 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 I P H+ K + E ++L + ER L Sbjct: 439 DEQI-YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLS 497 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 ++ + G ++D + + +Q + + +L+++I + L + LF Sbjct: 498 IVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEK 556 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304 + ++ ++ T +L D IL + + L + VS DG+ Sbjct: 557 LKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGK 616 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + TGR S QN+P + Sbjct: 617 AHTRYTQT-LTSTGRLSSVDPNLQNIP------------------------VRLEEGRKI 651 Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-ID 422 R + G ++ +D + IE RVLA I+ + +AF G DI+ +T + FN D Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + + Y + + + + + + + + Sbjct: 712 EVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + E + + R + +L Sbjct: 767 EKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFNLRSFAER------------ 805 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + +N+ K+ + Sbjct: 806 -----------------------------------TAMNSPIQG---SAADIIKVAMINM 827 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 Q ++L E ++L VHDE++ E P + + +M + Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876 Query: 662 PLKAEGYEAKRY 673 PLK E + + Sbjct: 877 PLKVESKHGQTW 888 >gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11] gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46] Length = 876 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 104/685 (15%), Positives = 199/685 (29%), Gaps = 167/685 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 KL+++ ET E + A +D V + + ++++ Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFD-GKVY---ISTDEEL---FVKFI 356 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSE 120 D + N L+ +I + + A Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEP--------------- 398 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +K K L + + ++ F Y + + ++ Sbjct: 399 -SSKDYSDKNL------CASYEIALPVCTDEQNEKYEAFACYAELCEKLGDKIKAHGQEK 451 Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E L + + + G +D + E+++ + K+L+ I + + Sbjct: 452 LLSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYESAGCEF-NINSP 510 Query: 239 YALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L + LF G+ ++ T +L +++L S L Sbjct: 511 KQLGVVLFENLGLPCKKKTKSGYSTNAEVLESLRYEHPVVEMVLRYRTLSKLNSTYCEGL 570 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + ++ DGR+ +RTGR S QN+P Sbjct: 571 LKVIADDGRIHSNFNQTE-TRTGRISSTEPNLQNIP------------------------ 605 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R A +G LV AD + IE RVLA I+G+ IKAF + EDI+ T ++ Sbjct: 606 VRTELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITASQ 665 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 FN P+D V+ R+ K + + G+ Sbjct: 666 VFNMPLDMVTPIMRSRAKAVNFGIV--------------YGIG----------------- 694 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 A + + +++ A + GV K++ E Sbjct: 695 -------------AFSLAKDIGVSNKEAKHYIESYLAHYSGVDSYMKNVVEKA------- 734 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 D ++ RR ++ + ++ R Sbjct: 735 -------------------NADGYVETMFGRRRNLPELTSSKHMIRAFGERVAR------ 769 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ M + +VL VHDE++ E P V + Sbjct: 770 ---NMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQDESMRVALIVQ 826 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL A+ + + Sbjct: 827 EEMENAVK--MSVPLTADAAIGRTW 849 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144] Length = 876 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 99/652 (15%), Positives = 193/652 (29%), Gaps = 128/652 (19%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92 + + + E L+Q+L D+ + +++ + + LGI+I + Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + S+ + ++ K I F KG P + H Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + +++ E + ++ L D E L + + + G D++ + +++ Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 I ++ L +I + G + L + LF + ++ ++ T +L Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D IL + + L + +S D R+ A +TGR S QN Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388 +P +R S ++ AD + IE RV Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I ++ AF N DI+ T K FN D+V R K + Sbjct: 662 LAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ SQ+ + + Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A GV Q D+ + + RR Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 783 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 + + +NT +Q + DI+ M ++ Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M + +PLK + + Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 184/665 (27%), Gaps = 153/665 (23%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A I A A + E+ + SD+ +L VA F+ L Sbjct: 440 AEIRGMAVA-APKRAYYVRFGERLEL-SDVRPWLV-SDRPKVA----FDLKSMAFALDAH 492 Query: 85 GIDI-PSKRWICTSVLARTNGLPSS---LKNA-CLALNFSEHLTKMEEGKALIARFCKGS 139 GI + W + A L + L + Sbjct: 493 GIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARELGQELPTFDDGV---REKWLAYTA 549 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 PP + A ++ ++ Y + E L + + G+ Sbjct: 550 SQLPPLFESLAYTIRMQEMERLYQ------------------EVELPLAFVLAKMEITGF 591 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 ++ + ++ + + + ++ ++I L G + L LF G+ + ++ Sbjct: 592 YVNREKLVAFGQELTERITRITQEIYDLA-GTSFNLNSPKQLGEILFDKLGLPALKKTKT 650 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315 T +L IL+ + + L + + GR+ + Sbjct: 651 GYSTSADVLEKLAPMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVHTRFHQT-LT 709 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + L + + Sbjct: 710 ATGRLSSSEPNLQNIPIRLEEGRRLRRVFEPTY-----------------------KDWV 746 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R+LA ++G++ I AF DI+ T A F P ++V+ R K + Sbjct: 747 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 806 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ +QN+ Sbjct: 807 NF--------------GIVYGISDFGLAQNL----------------------------- 823 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + +++ K GV + ++ + ++ Sbjct: 824 -NIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMN---------------- 866 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ S R +Q + D++ M Sbjct: 867 ----------RRRYLPDIHSRN---YQLRSFAERTAM------NTPIQGSAADLIKLAMV 907 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 + ++L VHDE++ E P+ ++ L M + +PLK + Sbjct: 908 RIDRAMRDAQMDARMLLQVHDELIFECPNDELAALEVLVRDNMENAMT--LSVPLKVDTA 965 Query: 669 EAKRY 673 + Sbjct: 966 YGPTW 970 >gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045] Length = 876 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 194/652 (29%), Gaps = 128/652 (19%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92 + + + E L+Q+L D+ + +++ + + LGI+I + Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + S+ + ++ K I F KG P + H Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + +++ E + ++ L D E L + + + G D++ + +++ Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 I ++ L +I + G + L + LF + ++ ++ T +L Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D IL + + L + +S D R+ A +TGR S QN Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388 +P +R S ++ AD + IE RV Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 662 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ SQ+ + + Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A GV Q D+ + + RR Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 783 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 + + +NT +Q + DI+ M ++ Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M + +PLK + + Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872 >gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228] gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228] Length = 903 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 194/652 (29%), Gaps = 128/652 (19%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92 + + + E L+Q+L D+ + +++ + + LGI+I + Sbjct: 363 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 419 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + S+ + ++ K I F KG P + H Sbjct: 420 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 474 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + +++ E + ++ L D E L + + + G D++ + +++ Sbjct: 475 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 534 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 I ++ L +I + G + L + LF + ++ ++ T +L Sbjct: 535 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 593 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D IL + + L + +S D R+ A +TGR S QN Sbjct: 594 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 652 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388 +P +R S ++ AD + IE RV Sbjct: 653 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 688 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 689 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 737 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ SQ+ + + Sbjct: 738 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 764 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A GV Q D+ + + RR Sbjct: 765 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 810 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 + + +NT +Q + DI+ M ++ Sbjct: 811 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 849 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M + +PLK + + Sbjct: 850 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 899 >gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] Length = 876 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 194/652 (29%), Gaps = 128/652 (19%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92 + + + E L+Q+L D+ + +++ + + LGI+I + Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + S+ + ++ K I F KG P + H Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + +++ E + ++ L D E L + + + G D++ + +++ Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 I ++ L +I + G + L + LF + ++ ++ T +L Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D IL + + L + +S D R+ A +TGR S QN Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388 +P +R S ++ AD + IE RV Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 662 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ SQ+ + + Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A GV Q D+ + + RR Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNVNL-------------- 783 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 + + +NT +Q + DI+ M ++ Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M + +PLK + + Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 189/662 (28%), Gaps = 138/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I + D E + D S S L + + +N + I K I++ Sbjct: 337 IIYIFISVDGEKIYYVD----SNEVSKLDSIFSNNEIKKYGYNLKDDYISLK-PYNINLE 391 Query: 90 SKRWICTSVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALI--ARFCKGSIDS 142 + ++ SS C L+ + GK + D Sbjct: 392 -NMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDL 450 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y V+ E D+ + LF + E L + + G ++D Sbjct: 451 AEYMGQIICTVKETVPMMERSLMDM-SMDGLFYHV------EMPLVEVLGHMEYEGIKVD 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ +L + L+++I +L+ + L + LF + ++ ++ Sbjct: 504 KSILDELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTKTGYS 562 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L D I + L ++ + R+ + + TG Sbjct: 563 TNADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQT-ITTTG 621 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R IA + KLV Sbjct: 622 RISSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVD 657 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + Sbjct: 658 ADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFG 717 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + A + Sbjct: 718 II--------------------------------------------YGKSDFGLADDLNI 733 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++ AK+ + + E + ++ Sbjct: 734 PVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN------------------- 774 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR ++K + +Q + DI+ M N Sbjct: 775 -------RRRYIPEIKSSNFMERNRGKRF---------AMNAPIQGSAADIIKIAMINVH 818 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E D V + M + + L + Sbjct: 819 KKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENAVN--IDVHLDVDLNVGS 876 Query: 672 RY 673 + Sbjct: 877 SW 878 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 174/640 (27%), Gaps = 141/640 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ L ++ +E ++ ++ KK LGI+ + C + A Sbjct: 355 LAQEEENIKALKEFFENEDILKNGYSIKNALTALKK-LGIEFKGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKDGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V L M +PL + + + K Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 105/657 (15%), Positives = 197/657 (29%), Gaps = 137/657 (20%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWI 94 + D V+ W + S + + + L D + H ++++ + L +++ + Sbjct: 390 SLSDGAVQQW---KPSEVLAKVGPLLSDAKLPKYTHALKDQQVVLSRADLNVEVRNV-VG 445 Query: 95 CTSVLARTNGL---PSSLKNACLALNFSEH-LTKMEEGKALIA--RFCKGSIDSPPYDCT 148 T + + T +L+ + + GK + P+ Sbjct: 446 DTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGFDQVAVAVAGPWAGE 505 Query: 149 RA-NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 RA K E T++L+ + E L + + RG +D + Sbjct: 506 RAGLAATLGPHMVAAAKAAGEQTQKLYA------EVELPLARVLARLERRGVLLDEAELQ 559 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 + + + + L + + + L LF G+ ++ T Sbjct: 560 RQNDELGGQIDALKSTLQEEAGYAVD-PNSPKQLGKLLFEERGLPAKKKTKTGYSTDAQT 618 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 L ++ +IL+ + + L+TL + V+ + GRL + A TGR S Sbjct: 619 LEELSLLDPIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVA-ATGRLSSR 677 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A G +LV D + Sbjct: 678 EPNLQNIP------------------------IRTEQGRRIRRGFVAPEGMQLVTLDYSQ 713 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++ + +KAF +G D++ T A+ F P +V+ EQ Sbjct: 714 IELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQ--------------- 758 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 +A + + A + + Sbjct: 759 -----------------------------RRVAKAVNFGVIYGQSAFGLARQLGIPQGRA 789 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 KA+ K GV L + Sbjct: 790 GKYIKAYFKKIPGVSSYMNALIDTAKDTGFAET--------------------------- 822 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNG- 621 + G + + R+YG ++ +Q + DIL M + Sbjct: 823 ---------IFGRRRRIPELRRRGAVARSYGERIARNTPIQGSAADILKIAMVEVERLLD 873 Query: 622 ----YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++LTVHDE++ E + L M K+ S +PL EG + Sbjct: 874 DKPWARMLLTVHDELIFECETDKVQELIGLVKPAMEKSAS--LDVPLLVEGGAGANW 928 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 96/672 (14%), Positives = 197/672 (29%), Gaps = 137/672 (20%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 + + + + ++A DDE + ++ + L +E + + H+ + Sbjct: 313 TLSFYPLILEGEVKAVSFATDDESFFV------EVDDYEVFKLLDNEKLTLIGHDIK-DF 365 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIA 133 + GI++ ++ T+++ S + L + GK Sbjct: 366 FVNLSYHGIELN-CKFYDTAIMTYLLNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSK 424 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQ 192 + D A +D + + L D E L + + Sbjct: 425 KSYDDIDKKLLIDYLCATAS------KLSKLKDKLMSFIKEMEMEELLDNVELPLVEVLK 478 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 ++ G+ +D D++ L + I ++ K+ +DI + T L +LF + Sbjct: 479 SMEVYGFTLDKDVLKDLSKEIGEKTDKIIKDIYDAAGYEF-NINSTKQLSEFLFDKLNLP 537 Query: 253 LVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + ++ T +L I+ ++ + D ++ T Sbjct: 538 PIKKTKTGYSTDMEVLVELIPYNEIVGEIIEYRQLMKLKSTYIDGFMPIMDKDDKVHSTF 597 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + A TGR S QN+P +R I Sbjct: 598 KQTVA-ATGRISSTEPNLQNIP------------------------VRDEFGRRIRKAFI 632 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +S G +V AD + IE RVLA ++ + I++F N EDI++ T ++ F ++V+ E Sbjct: 633 SSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGEM 692 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + G+ S Sbjct: 693 RRRAKAVNF--------------GIVYGISDYGLS------------------------- 713 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 K+ + + +++GV + + ++ RR Sbjct: 714 -----RDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIPEIN 768 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + G+ +NT +Q + D Sbjct: 769 S-----------------KNYNQRSFGERMAMNT------------------PIQGSAAD 793 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 I+ M ++L +HDE++ +T V L +M + Sbjct: 794 IIKMSMVKVYNELKSRSLKSKLILQIHDELIVDTFPDEVEIVKNLLKTIMENVIK--LRV 851 Query: 662 PLKAEGYEAKRY 673 PL + K + Sbjct: 852 PLVVDIGYGKNW 863 >gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico] gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia] Length = 853 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A I + A+D E E Q L ++V+ + H + L Sbjct: 327 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 382 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + +++ + SL + Sbjct: 383 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARL 426 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + N + +LF Y ER L + + + G Sbjct: 427 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 468 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253 +D +++ +L + + L+++I L + L LF G+ + Sbjct: 469 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCKF-NVASARQLGKLLFERMGLSSSAKKM 527 Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 S T +L + D +L S ++ L V + + T Sbjct: 528 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 587 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P +R +A Sbjct: 588 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 623 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KLV AD + +E +++A IAG AF+ G+DI++ T + F E R Sbjct: 624 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 681 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y + Sbjct: 682 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 701 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + + + + Sbjct: 702 ----GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 743 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ S + + T R +Q + D++ + Sbjct: 744 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 782 Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 M N G I+L VHDE++ E P++ V L +M ++ +PLK + Sbjct: 783 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 839 Query: 669 EAKRY 673 + Sbjct: 840 VGSSW 844 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 100/629 (15%), Positives = 181/629 (28%), Gaps = 148/629 (23%) Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNACLAL 116 + L+ +TV V ++ L ++ K + + S L Sbjct: 352 EILKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYEL-ETL 405 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 S T +E K K + + ++ L Sbjct: 406 FVSYLNTDIEAVKK-----DKKMVSVVLLKRLWDDLLRLID---------------LNSC 445 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + ER L + + G+++D D +L+ + I + KL+ I ++ G + Sbjct: 446 QFLYENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKILKLETQIYQIA-GEWFNIN 504 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L LIL+ + Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQ 564 Query: 294 TLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L +A++ GR+ T G + TGR + QN+P Sbjct: 565 GLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP--------------------- 602 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T Sbjct: 603 ---VKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQT 659 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ F I V+ E R+ K + + G+ Sbjct: 660 AAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISDY------------ 693 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 A K+ + ++ V + ++ Sbjct: 694 ------------------GLARDIKISRKEAAEFINKYFERYPKVKEYLDNIVRFARENG 735 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + R+ D+K R+ Sbjct: 736 YVLTLFN--------------------------RKRYVKDIKSANRN----------ARS 759 Query: 593 YGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645 Y ++ N +Q + DI+ M + I+L VHDE++ E P V Sbjct: 760 YAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVK 819 Query: 646 TLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M A +PL E E + Sbjct: 820 RIVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] Length = 864 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 160/665 (24%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 A I + A+D E E Q L ++V+ + H + L Sbjct: 338 HAKIADGTINELSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVH----DAKLIM 393 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + +++ + SL + Sbjct: 394 RHFP---DLGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLHQ-------------KFPARL 437 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + N + +LF Y ER L + + + G Sbjct: 438 ACTLVQLHGVMRNKLLLDRLFTVY------------------YQLERPLVRVLYEMQEIG 479 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253 +D +++ +L + + L+++I L + L LF G+ + Sbjct: 480 VEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCKF-NVASARQLGKLLFERMGLSSSAKKM 538 Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 S T +L + D +L S ++ L V + + T Sbjct: 539 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSM 598 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P +R +A Sbjct: 599 ISTATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 634 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KLV AD + +E +++A IAG AF+ G+DI++ T + F E R Sbjct: 635 GHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFG--DGVTDPELRRRA 692 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y + Sbjct: 693 KSINFGIIY-----GMSPFGLAKNV----------------------------------- 712 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + + + + Sbjct: 713 ----GITRQEASQYVAQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 754 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ S + + T R +Q + D++ + Sbjct: 755 ------------GRKCYISGINSEQH---TVRGFAERAAINAP------IQGTAADVVKK 793 Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 M N G I+L VHDE++ E P++ V L +M ++ +PLK + Sbjct: 794 AMINLRNKLEVGA-IILQVHDELLVEVPESHVDRVAKLMKEVMEGVANF--SVPLKVDIG 850 Query: 669 EAKRY 673 + Sbjct: 851 VGSSW 855 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 101/662 (15%), Positives = 192/662 (29%), Gaps = 135/662 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143 + + + A + K+ E + GK + Sbjct: 402 MQGIDF-DLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKR--AVPELKVV 458 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R HV + ELF L E L + + +G ++D Sbjct: 459 AEHVARKVHVLYDVKQTFVEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 513 ERLCNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L IL+ + L + V D ++ ++TGR Sbjct: 572 SADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G + Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K + Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 A + + GV + +D+ + + R +P + R Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL-- 798 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 799 -------------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMA 827 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGP 885 Query: 672 RY 673 + Sbjct: 886 TW 887 >gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAKRT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635] gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635] Length = 876 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 200/691 (28%), Gaps = 133/691 (19%) Query: 2 SKLFIDI-ETRSPQPLPKVGVWAYAEQAVITL----------CAYAWDDEPVKLWDRTEQ 50 ++ DI T + I + +D E + D Sbjct: 298 KQVSFDILPTFEYVDFNH--LDEAVIHFEIDGSNYLKDDILKFGF-YDKERYIVVDADNI 354 Query: 51 SAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 P +L+++L +E V +++ F + L I+I + + + + Sbjct: 355 KDYP-ELIKWLENENSKKVVYDAKKTF---VIAHRLNINIQNI-VFDAMLASYIFDPSRT 409 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + + K ++ + KG P H+ + + K +E Sbjct: 410 IDDVYSVVTNYHQTY----VKEDVSIYGKGKKRHVPDTEILNTHIASITKSIDAVKPLME 465 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E +++ L D E L + + + G D++ + +Q+ + ++ + L + I Sbjct: 466 KELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAA 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L + LF + ++ ++ T +L + IL + Sbjct: 526 GEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLQNEHPIINDILEYRQLA 584 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + +S+D R+ A +TGR S QN+P Sbjct: 585 KLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDPNLQNIP-------------- 629 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R S ++ AD + IE RVLA I +D +AF + Sbjct: 630 ----------IRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIH 679 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G+DI+ T K F ++V+ R K + + Y L++ + Sbjct: 680 GQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYG-----ISDYGLSQSLNITRKEA 734 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + + L+ R + +L Sbjct: 735 KIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNL 785 Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + SA + + + + Sbjct: 786 RGFAERTAMNTPIQGSAADIIKLAMVEFDKQ----------------------------- 816 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 VQ S K ++L VHDE++ E P + Sbjct: 817 ------------------VQHTS-----------YKAK--LLLQVHDELIFEVPKSEVEE 845 Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 846 FSLFVEDIMEHALD--LDVPLKVDSNYGPTW 874 >gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel] gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel] Length = 849 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 98/664 (14%), Positives = 186/664 (28%), Gaps = 158/664 (23%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 +A I + A+D E + E Q L ++V+ V H++ ++ + Sbjct: 323 YAKIADETINELSVAYDREHALTIRKEEVQNFMEVAKQILASDSVLKVVHDAK---LIMQ 379 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + + +++ + SL + KM AL+ Sbjct: 380 HFPDLGV----FDDVMLMSYSLDASSHDHSLTGMTYRYLHQKFPAKMAC--ALVQLHSVM 433 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + +LF Y ER L + + + G Sbjct: 434 REK-----------LLSDRLFTVY------------------YQLERPLVRVLYEMQEVG 464 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DL 253 +D +++ +L + L+ +I L + L LF G+ + Sbjct: 465 IEVDTEILKQLSRDFHGSIRSLEREIYGLAGCKF-NVASARQLGKLLFERMGLSSSTKKM 523 Query: 254 VDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 S T +L + D +L S ++ L V + T Sbjct: 524 PSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTERVHTSYSM 583 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A+ TGR S QN+P +R +A Sbjct: 584 VATATGRISSSNPNLQNIP------------------------IRSKEGTEIRKAFVARE 619 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KLV AD + +E +++A IAG AFA G+DI+ T + F D E R Sbjct: 620 GHKLVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFG--DDVTDPELRRRA 677 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + G+ ++NV Sbjct: 678 KSINF--------------GIIYGMSPFGLAKNV-------------------------- 697 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + + + + + Sbjct: 698 ----GITRQEATQYVEQYFRSYPEIKNYMEAIKAYARKYGYTRTAF-------------- 739 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ + + R +Q + D++ + Sbjct: 740 ------------GRKCYVPGINSAQHAIRGFA---ERAAINAP------IQGTAADVVKK 778 Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYE 669 M N I+L VHDE++ E P++ +V L +M S+ +PL+ + Sbjct: 779 AMINLRDKLEVGTIILQVHDELLVEVPESHVDNVAQLMKEVMEGVASF--SVPLRVDIGV 836 Query: 670 AKRY 673 + Sbjct: 837 GNSW 840 >gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] Length = 880 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 88/597 (14%), Positives = 165/597 (27%), Gaps = 127/597 (21%) Query: 91 KRWICTSVLARTNGL---PSSLKNACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYD 146 K + SV A +++ S +K GK+ ++ + Sbjct: 393 KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLS----EVLKFNDEK 448 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +++ + RL E L + + G R+D + Sbjct: 449 AEKYFASESYVALFASDYLLKKLNELELTRLYENV--ELPLIYSLARMENTGVRVDEKRL 506 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKS 263 + + ++ KL+ I+ G + L LF + T Sbjct: 507 KDYADTLLEKISKLEASIIDKA-GESFNINSPKQLGEILFGKLKLSGGKKTKTGYSTAAD 565 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + L+ + DGR+ G+ + TGR S Sbjct: 566 VLEKLAPEHEIIRDILEYRQLTKLNSTYATGLAGYIRDDGRIHGSFNQT-ITATGRISST 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + G V AD + Sbjct: 625 DPNLQNIP------------------------VRTEMGSKIRDIFVPKPGYVFVDADYSQ 660 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++G++ I+++ DI+ T A+ F+ P+DKV+ E R K + + Y Sbjct: 661 IELRVLASMSGDEKLIESYHTAADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVYG- 719 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + + F+ +E + E + G Sbjct: 720 ----ISAFGLSEDLSISRKEALDYINNYFKIYEGVKRFLDKQVADAKEKGYVKTMFGRIR 775 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + Sbjct: 776 PI---------PEIKSSNFMTRS------------------------------------- 789 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 GD +N+ + DI+ M + Sbjct: 790 ----------FGDRVAMNSPIQG------------------SAADIMKIAMIRVDEALNK 821 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 +IVL +HDE++ E + V + M + S +PL+ + + K + Sbjct: 822 SGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREAVS--LKVPLEVDAHIGKTW 876 >gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] Length = 876 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + +L+ Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 96/661 (14%), Positives = 191/661 (28%), Gaps = 137/661 (20%) Query: 30 ITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGI 86 I + + QS + ++ DE+ +S R + + GI Sbjct: 336 ILGFSLVNETGH-YYIPKEIAVQSEI---FKKWAEDESQKKWVFDSK--RSVVALRWQGI 389 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143 ++ + + A ++ + ++ E KG+ + Sbjct: 390 ELKGAEF-DALLAAYIINPANTYDDVASVAKDYGL-HIVSSDEAVYG------KGAKRAV 441 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P + A H+ + + + E +L + E L L+ + G ++D+ Sbjct: 442 PGENELAMHLVRKAAAVDSLREKLLQELENNDQLELYEELELPLALILGEMESIGVKVDV 501 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + ++ E + K+ +E I ++ + L + LF G+ +V ++ T Sbjct: 502 GRLERMGEELGARLKEYEEKIHEIAGEPF-NINSPKQLGVILFEKLGLPVVKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL + L + + D T ++TGR Sbjct: 561 SADVLEKLADQHDIVSYILQYRQIGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + S + A Sbjct: 621 SSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEKDWLIFAA 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA I+ ++ I+AF N D++ T F+ D+V+ R K + Sbjct: 657 DYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQDEVTPAMRRQAKAVNF-- 714 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ SQN + Sbjct: 715 ------------GIVYGISDYGLSQN------------------------------LGIT 732 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + +GV ++ + + +R +P L R Sbjct: 733 RKEAAAFIERYLESFKGVKVYMEESVQEAKQKGYV--TTLMQRRRYIPELTSRNFNL--- 787 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + + +NT +Q + DI+ + M + Sbjct: 788 ------------RSFAERTAMNT------------------PIQGSAADIIKKAMIDMAA 817 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E P + L +M +PLK + Sbjct: 818 KLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEHA--LNLDVPLKVDFASGPS 875 Query: 673 Y 673 + Sbjct: 876 W 876 >gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEAVIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 91/652 (13%), Positives = 174/652 (26%), Gaps = 148/652 (22%) Query: 32 LCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + ++ + + + + + E V + + I Sbjct: 337 GISLSFKEGEGYFISPFDFNNEIRKKIENIISSENVKKIGSYIQRDLHFL----NCKIKG 392 Query: 91 KRWICTSVLARTNGL---PSSLKNA-CLALNFSE-HLTKMEEGKALIARFCKGSIDSPPY 145 S+ + SL LN + K + S Sbjct: 393 D-VFDVSLASYLLNPERQNHSLDILIGEYLNKTSFIPQKY--------AGYLFPLKSILE 443 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + ++ F Y E L + ++ G ++D + Sbjct: 444 ERIKNEGLE----FVLYNI-------------------EIPLIPVLYSMEKWGIKVDKEY 480 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + +L + + KKL+E+I +L G + L LF + + T Sbjct: 481 LKQLSDEFCERIKKLEEEIYELA-GTRFNLNSPKQLSEVLFERLKLPSGKKGKTGYSTSS 539 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 S+L + IL ++ + V+ GR+ G + TGR S Sbjct: 540 SVLQNLINAHPIVRKILQYRELYKLKSTYVDAIPNLVNPQTGRVHTKFNPTG-TATGRIS 598 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R ++ +G LV D Sbjct: 599 SSEPNLQNIP------------------------IKSEEGRKIRRAFVSEDGYFLVSLDY 634 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++ E I AF GEDI+ T ++ F P ++V R+ K + + Y Sbjct: 635 SQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNFGIIY 694 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S F+ + + + + E L G Sbjct: 695 G-----ISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGR 749 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + K + + + Sbjct: 750 KRYI---------PEIKSINKQVRNAYERIA----------------------------- 771 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + +L Y K EN Sbjct: 772 -----------INAPIQGTAADIIKLAMIEIY--KEIEN-----------------KNLK 801 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672 I+L +HDE++ E P+ + M K +PL E K Sbjct: 802 SRILLQIHDELILEVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 851 >gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] Length = 876 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGENHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] Length = 886 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 188/662 (28%), Gaps = 139/662 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + + D+ ++ + + L Q L D+ + N F+ + L Sbjct: 342 LEGFSLKVGDK----IYVSKDVVLLQETPLRQMLEDKKIKK---NV-FDIKRTYVGLHRL 393 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 ID + + + ++ + + K + + KG + P Sbjct: 394 DIDAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YGDYSVKTDLEVYGKGKKKAVP 448 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 D H+ A + E K+ + + ++ E + + + G +++ Sbjct: 449 EDDEFFEHLAAKVVVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEAS 508 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 ++ +L A + ++L+ I + + L LF + + ++ T Sbjct: 509 VLNQLGNDFALKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLNLPPIKKTKTGYSTS 567 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L + IL+ + + L E + DGR+ + TGR S Sbjct: 568 VEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDGRIHTRYLQT-LTATGRLS 626 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVA 379 QN+P +R + +G Sbjct: 627 SVDPNLQNIP------------------------TRTDEGKQIRKAFVPSTKDGYIF-SC 661 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438 D + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + Sbjct: 662 DYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFG 721 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + Sbjct: 722 IVY-----GISDYGLSKNL---------------------------------------GI 737 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + ++ + + + Sbjct: 738 SRKQAKTFIDNYFEQYPQIKDYMDKAIKEAREKGYAETIMH------------------- 778 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR D+ + + R + +Q + DI+ M N Sbjct: 779 -------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQ 822 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K +VL VHDE++ + P ++ + +M + +PL A+ Sbjct: 823 KKLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSAVT--LDVPLIADSNWGH 880 Query: 672 RY 673 + Sbjct: 881 NW 882 >gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] Length = 887 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 180/664 (27%), Gaps = 144/664 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + D+ + + + + L DE + N F+ + L Sbjct: 343 VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLD 394 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + ++ + ++S GK + Sbjct: 395 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 453 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + ++ N +++ + +D E L E + + G ++ Sbjct: 454 LFNHLASKINAIESLKKPLLEKLKDHE-----QDDLFETI--EIPTARVLARMEMNGMKV 506 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + +++LQ A + K+L++ I + L LF G+ + ++ Sbjct: 507 EASTLIQLQNEFAVKLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGY 565 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ + + L + + SDGR+ + TG Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQSDGRVHTRYLQT-LTATG 624 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 625 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 660 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K + Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L Sbjct: 721 FGIVY-----GISDYGLSKNL--------------------------------------- 736 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + + + + Sbjct: 737 GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH----------------- 779 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ T S R + +Q + DI+ M N Sbjct: 780 ---------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAMIN 821 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K IV+ VHDE++ + P ++ + +M +PL A+ Sbjct: 822 MQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 879 Query: 670 AKRY 673 + Sbjct: 880 GHNW 883 >gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] Length = 887 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 180/664 (27%), Gaps = 144/664 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + D+ + + + + L DE + N F+ + L Sbjct: 343 VGFSLKITDK----IYVSRDVELLEEDNIKHILEDEKIKK---NV-FDLKRTMVAAHRLD 394 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + ++ + ++S GK + Sbjct: 395 IHTHGLDY-DMLLASYLINNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDE 453 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + ++ N +++ + +D E L E + + G ++ Sbjct: 454 LFNHLASKINAIESLKKPLLEKLKDHE-----QDDLFETI--EIPTARVLARMEMNGMKV 506 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + +++LQ A + K+L++ I + L LF G+ + ++ Sbjct: 507 EASTLIQLQNEFAVKLKELEDKIYSQAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGY 565 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ + + L + + SDGR+ + TG Sbjct: 566 STSVEVLDQLKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQSDGRVHTRYLQT-LTATG 624 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + + Sbjct: 625 RLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSEPDGYIF 660 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 D + +E RVLA ++G+ +AF G DI+ T K F+ D+V+ R K + Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L Sbjct: 721 FGIVY-----GISDYGLSKNL--------------------------------------- 736 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + + + + Sbjct: 737 GISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMH----------------- 779 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ T S R + +Q + DI+ M N Sbjct: 780 ---------RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAMIN 821 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K IV+ VHDE++ + P ++ + +M +PL A+ Sbjct: 822 MQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKKIVPEVMQSAVK--LDVPLIADSGW 879 Query: 670 AKRY 673 + Sbjct: 880 GHNW 883 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 91/632 (14%), Positives = 177/632 (28%), Gaps = 145/632 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNA 112 + L +++ V ++ + D K + + S Sbjct: 346 EAIKDLLTLQSIQKVV----YDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRS---- 397 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + I+ A + D+ + + Sbjct: 398 --SYDLETLF---------ISYLNTDIAAIKENRWAGATVLLRNLWDELSKLIDLNSAQY 446 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ + E L + + G+++D + + + + I + KL+ I ++ G Sbjct: 447 VYESI------EMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIA-GEW 499 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + +V ++ T +L LIL+ + Sbjct: 500 FNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILT 559 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L +A++ GR+ G + TGR + QN+P Sbjct: 560 TYCQGLVQAINPATGRIHTNFIQTG-TATGRLASAEPNLQNIP----------------- 601 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G L+ AD + IE R+LA I+ ++ I AF N DI Sbjct: 602 -------VKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDI 654 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T A+ F I +V+ R+ K + + Y GL Sbjct: 655 HSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS---------DYGLSRD-------- 697 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 K+ + K+ V + ++ + Sbjct: 698 ---------------------------IKISRKEAAEFINRYFEKYPRVKEYLDNVVKFA 730 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 ++ +R+ D+K L Sbjct: 731 RENG--------------------------FVLTIFNRKRYIKDIKSTNKNLRNYA---E 761 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R + +Q + DI+ M K I+L VHDE++ E+P Sbjct: 762 RIAM------NSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815 Query: 643 SVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL E E + Sbjct: 816 IVKEIVKSEMENAV--LLKVPLVVEVKEGSNW 845 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 178/662 (26%), Gaps = 138/662 (20%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRD-ETVMCVAHNS 73 + G+ E + A + +E + + + + +V + + Sbjct: 321 EAGMQLVIENGQVAAMALCYGEEKIYSIPAAGFITGEYLAERMEELCTAVPSVSVL--DL 378 Query: 74 LFERILFKKTLGIDIPS-------KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHL 122 + K + + V + L+ + Sbjct: 379 KPQLPYLKNRDRRVVDGSGNDGGSEAMFDAGVAGYLLNPLKDTYDYDDLARDYLDMTVPS 438 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 GK + D P A+ + + + ++L D Sbjct: 439 KADLMGKT----SFTAAFDMMPDKAQTCVCYMAYVAWKAKPELVKKLEASGMRKLF--FD 492 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + + + G + + + E + + KL+++I + T+ + L Sbjct: 493 IEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDTETEF-NINSPKQLG 551 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ T +L +L+ + + L+ + Sbjct: 552 EILFDRMKMPGGKKTKTGYSTAADVLEKLAPEYPVVRKVLDYRQLTKLKSTYADGLAAFI 611 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DGR+ GT + TGR S QN+P Sbjct: 612 REDGRIHGTFNQT-ITATGRISSTEPNLQNIP------------------------VRME 646 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R + G L+ AD + IE RVLA ++G++ I A+ EDI+ T ++ F+ Sbjct: 647 LGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITASEVFHV 706 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+++V+ QR K + + Y L + + FE + + + Sbjct: 707 PLEEVTPLQRRNAKAVNFGIVYG-----ISAFGLSEDLSISRKEALEYINRYFETYPEVK 761 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + E + + G + + Sbjct: 762 KFLDHLVELGKEQGYVETMFGRRRPI---------PELKSANFMQRS------------- 799 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 G+ +N+ Sbjct: 800 ----------------------------------FGERVAMNSPIQG------------- 812 Query: 600 NIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 + DI+ M K +VL VHDE++ ET V L M Sbjct: 813 -----TAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKVLEEEMK 867 Query: 653 KN 654 Sbjct: 868 NA 869 >gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948] gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765] gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus 132] gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754] gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus] gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948] gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20] gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765] gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754] gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus CGS01] gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131] gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 876 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + +L+ Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118] gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118] Length = 892 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 90/672 (13%), Positives = 188/672 (27%), Gaps = 118/672 (17%) Query: 12 SPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 S + E A I + D+ L + L + V Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + + + + LG+ + + +++ + + L +H E Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKINF-DLLLVSYLLDNSENSNDLG--LLAQQHEYYDVES 438 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 I P H+ K + E ++L + ER L Sbjct: 439 DEQI-YGKGAKHAVPEDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLS 497 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 ++ + G ++D + + +Q + + +L+++I + L + LF Sbjct: 498 IILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEK 556 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304 + ++ ++ T +L D IL + + L + VS DG+ Sbjct: 557 LKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGK 616 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + TGR S QN+P + Sbjct: 617 AHTRYTQT-LTSTGRLSSVDPNLQNIP------------------------VRLEEGRKI 651 Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-ID 422 R + G ++ +D + IE RVLA I+ + +AF G DI+ +T + FN D Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + + Y + + + + + + + + Sbjct: 712 EVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + E + + R + +L Sbjct: 767 EKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFNLRSFAER------------ 805 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + +N+ K+ + Sbjct: 806 -----------------------------------TAMNSPIQG---SAADIIKVAMINM 827 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 Q ++L E ++L VHDE++ E P + + +M + Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVMDSAVK--LDV 876 Query: 662 PLKAEGYEAKRY 673 PLK E + + Sbjct: 877 PLKVESKHGQTW 888 >gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122] gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122] Length = 876 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEAAIHFELHGGNYLRNNILKFSLFTGEKHIVINADDINNYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDILMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 199/659 (30%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQTDIALKSDAFKEWLADGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D D + Sbjct: 457 VVAEH-VARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 898 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 97/681 (14%), Positives = 169/681 (24%), Gaps = 157/681 (23%) Query: 28 AVITLCAYAWDDEPVKLWDRTE----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 + A + + A + L +L D + H+ + ++ Sbjct: 336 GELAGLALSVGAGHGRFIPLHCEGGLGEAGLAKLRPWLEDPKRYKLGHDCKASWVALRR- 394 Query: 84 LGIDIPSKRWICTSVLARTNGL----PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKG 138 G+ + T + + P L L + K G Sbjct: 395 KGVALAGI-VGDTMIESFLVEPNKLIPHRLDQLTKEYLQRTIPPQKRILGSG-------- 445 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLW 188 + + +C VEA F + D E L Sbjct: 446 -------KRLKRFSQLDAEALAPWCCTQVEAVAAAFVEIRERLDAEGHRDTLEQVSLPLS 498 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G ID + + K+ E + KL++ I ++ + + L LF Sbjct: 499 WVLGQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEIAGREF-NIASSKQLGAVLFDE 557 Query: 249 TGID---LVDMSEGTLKSILSHSNIT-----QLAKDLILNRLASSGSAILKLNTLSEAVS 300 + T +L +L + + L AV+ Sbjct: 558 LELPVIKRTKTGYSTNAEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVN 617 Query: 301 SD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 D GR+ T Q A +GR Q P Sbjct: 618 PDSGRIHATFQQT-AGVSGRLITTEPDLQRTP------------------------IKTP 652 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 VR + G KL+ AD + IE R+LA + + ++AFA G D++ T A+ F Sbjct: 653 EGKRVRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEV 712 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 GG + G + Sbjct: 713 ----------------------GGGPEKVSREQRGVG--------------------KLV 730 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + K+ + + A + GV Sbjct: 731 NFATIYGQGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQA----------- 779 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 D + RR ++ + A R Sbjct: 780 ---------------NVDGFVETLLGRRRYIPELSSNNWQDRQAG---ERIA------AN 815 Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 +Q + DI M A K ++L +HDE+V E P +V + M Sbjct: 816 TPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQME 875 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 +PL + + Sbjct: 876 SVVE--LRVPLVVDVGVGDTW 894 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 188/667 (28%), Gaps = 152/667 (22%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A IT YA+ DE V + +TE + + L + L ET+ + N+ + Sbjct: 338 ARNGKITEILYAFQDESVYSY-KTENNKIADALKEILESETIEKLFINAKESSLALL-CA 395 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140 GI++ + + + SSL + L+ Sbjct: 396 GIEVKNISFE-PLLAYYLLQPSSSLPDLEEIFSRELDIGMQEFS---------------- 438 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGY 199 + + A + + RD+ + L L E L + + G Sbjct: 439 ---------QDQILAVETIKLFKLRDILIKKLKDDSLYDLFKNMELPLIKVLAQMEYNGV 489 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDM 256 +ID D + +L + + + + + + +L + L LF G+ Sbjct: 490 KIDKDWLQQLSDKLEKRLEIITKKAHELAGEDF-NLNSPKQLGEILFEKLGLPVIKRTKT 548 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGAS 315 T ++L LI + +++L ++ G++ + + Sbjct: 549 GYSTNANVLEKLEGKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKIHTSFNQMV-T 607 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374 TGR S QN+P +R I S + Sbjct: 608 ATGRLSSTNPNLQNIP------------------------IRTEEGREIRKAFIPSSDNM 643 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ D + IE RV A ++G+ +AF +G DI+ T ++ F ++VS R KV Sbjct: 644 ILLAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKV 703 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + G+ + Sbjct: 704 IN--------------FGLAYGMS------------------------------AYGLSQ 719 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + + GV + + + Sbjct: 720 DLDIPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLY---------------- 763 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 R+ ++ S R VQ + DI+ + M Sbjct: 764 ----------GRKRYIPEINSSN---YHRRSFAERSAI------NTPVQGTAADIMKKSM 804 Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEG 667 + +I+L VHDE+V E + + M +PL + Sbjct: 805 LDVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDKMEAAAE--LDVPLLVDL 862 Query: 668 YEAKRYR 674 A+ +R Sbjct: 863 QIAENWR 869 >gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 876 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 95/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + +L+ Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNSKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 83/633 (13%), Positives = 170/633 (26%), Gaps = 130/633 (20%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112 +L + + ++ N + IL K+ LGI + ++ +++ + L Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTKF-DFLLVSYLLDTTDNDNELATL 429 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + GK + + +A+ + + ++ E T Sbjct: 430 AQRFDLYMTSDEDIYGKGAKFAIPEDDARVLAHLANKADILMQVEQSAFDALQEHEQTHL 489 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E L + + +G +ID + + + +++ I + G Sbjct: 490 -------YTEIELPLAQVLADMEYQGIKIDQKRLRDIGSDLEGRIHAIEDAIY-IEAGEK 541 Query: 233 RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ T +L D IL + Sbjct: 542 FNINSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVDHILQYRQLAKLKS 601 Query: 290 LKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V D ++ ++TGR S QN+P Sbjct: 602 TYVEGLLTVVHDQDSKIHTRFLQT-LTQTGRLSSVDPNLQNIP----------------- 643 Query: 349 RGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R+ + ++V AD + IE RVLA + G+ +AF NGED Sbjct: 644 -------MRTEEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGED 696 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T F D G+ + N Sbjct: 697 IHAETARAVFGLKDDAPVDALMRR-------------TAKAVNFGIVYGISDFGLANN-- 741 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + E Sbjct: 742 ----------------------------LGISRGEAKSFIDTYFKEFPQIHAWMAKIKEI 773 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + RR ++ L + Sbjct: 774 AHEQG--------------------------FVETIAKRRRYLPEIGSKNFNLRSFA--- 804 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPY 641 R + +Q + DI+ M ++L VHDE++ E P Sbjct: 805 ERTAM------NSPIQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEI 858 Query: 642 FSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L ++M +P++ E + + Sbjct: 859 QELTELVTNVMDSAV--VLDVPMRVESHYGNTW 889 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 169/656 (25%), Gaps = 142/656 (21%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL---FERILFKKTLGIDI 88 + A D T S +++ L H +L ++ + + Sbjct: 343 GFSVAVAD-KTYYLPIT-GENELSKIMELLT-------GHQALTVVYDAKTWHNLSAVAS 393 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 S+ A + + ++ K + Sbjct: 394 D-TAVFDVSLAAYLLDPLEN--------GYPPQKLAARYLDRILPEEPKKKKGEAVCNRD 444 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + L+ Y D + L E L + G +DL + Sbjct: 445 FSCAAV-RTLYDLYPLLDEKLKEASLDHLYEDL--ELPLAYTLARMERTGVAVDLQALDA 501 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 ++ + L+++I L + L LF G+ + ++ T +L Sbjct: 502 MKTEFRERIGALEQEIYSLAGEEF-NLNSPKQLGQILFDKLGLPALKKTKTGYSTDAKVL 560 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 IL L LS+ V+ GR+ + TGR S Sbjct: 561 EELAPHHEVVAKILKYRTLIKILTTYLEGLSKLVNEQTGRIHTHFNQTV-TATGRLSSTE 619 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P VR + G L+ AD + Sbjct: 620 PNLQNIP------------------------IRLEEGRRVRRAFVPGKKGNLLLSADYSQ 655 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++ + I +F EDI+ T A+ F + V+ E R K + + Y Sbjct: 656 IELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDVTPELRDRAKAVNFGIVYGI 715 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL + K+ Sbjct: 716 S---------DYGLS-----------------------------------QQLKIPRQEA 731 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + GV ++ E ++ Sbjct: 732 KEYISRYFERLPGVRDFIHNVVEDAKKNGYVTTLLN------------------------ 767 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RR D+ + R +Q + DI+ M + Sbjct: 768 --RRRYLPDINAKNFNQRSFA---ERTAM------NTPIQGTAADIIKLAMLRVEEALAG 816 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL VHD++V E + +V L M A +PL + + Sbjct: 817 MDDVQMVLQVHDDLVFEVKEESLINVARLVKKQMESALELA--VPLTVDVKAGLNW 870 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 150/686 (21%), Positives = 228/686 (33%), Gaps = 130/686 (18%) Query: 6 IDIETRSP--QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 D ET + +GV AY ++ S P + Sbjct: 25 FDTETYYSKGYDIRSLGVDAYVADPRFDCYLASFWGPHGNFV--GHPSECPWE-----EF 77 Query: 64 ETVMCVAHNSLFERILFKK--TLGI---DIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + ++HN+ F+R +F + LGI I + W ++ LA P +L A L Sbjct: 78 NDCVWISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL-L 136 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RL 177 E K I KG Y D EL+ Sbjct: 137 GEKPNK------AIRDAMKGIQGGLLCHDKAVLD---------YALDDARLACELWISHC 181 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ER L L + G +D + + E + Q R + L Sbjct: 182 DKWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVRDD---EATNLPWFPRLKPSS 238 Query: 238 TYALRMYLFLITGIDLVDMSEGTL---KSILSHSNITQLA-KDLILNRLASSGSAILKLN 293 A I + + + + + K + R A+ + L Sbjct: 239 PKAFAEACQQAR-IPIPNSTSEDDPQTQEWIERYGERYPWLKHMSEWRKANRMLKV--LE 295 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC-VFQPQNLPRQERSEEILTQTIQALNRGET 352 T+ DG L L+++GA TGRW+G QN R+ Sbjct: 296 TMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNREAYYGVDP------------ 343 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R C++A G KL++ADL+ IE RVLAWIAG+ NG IY Sbjct: 344 ------------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAH 391 Query: 413 ---YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + K + + K + LGY G K F+++A GL++ Sbjct: 392 AETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMSIGEA----- 446 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +R + ++ LW+ + + Sbjct: 447 ----------------------------------KRTVDDFRKANPRIVSLWQAVEDSMR 472 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + + LPS R + Y DV+ + T R Sbjct: 473 YHI----------------------GSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGRR 510 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 YGGKLTEN+VQA +RD+ EG+ K G I+ TVHDE++ E P+ +V T+ Sbjct: 511 LHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVTD 570 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 L+ + P W GLP+ AEG E Y K Sbjct: 571 LLAQTPDWIPGLPVAAEGIETSCYTK 596 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 91/632 (14%), Positives = 177/632 (28%), Gaps = 145/632 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNA 112 + L +++ V ++ + D K + + S Sbjct: 346 KAIKDLLTLQSIQKVV----YDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRS---- 397 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + I+ A + D+ + + Sbjct: 398 --SYDLETLF---------ISYLNTDIAAIKENRWAGATVLLRNLWDELSKLIDLNSAQY 446 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ + E L + + G+++D + + + + I + KL+ I ++ G Sbjct: 447 VYESI------EMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIA-GEW 499 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + +V ++ T +L LIL+ + Sbjct: 500 FNINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILT 559 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L +A++ GR+ G + TGR + QN+P Sbjct: 560 TYCQGLVQAINPATGRIHTNFIQTG-TATGRLASAEPNLQNIP----------------- 601 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G L+ AD + IE R+LA I+ ++ I AF N DI Sbjct: 602 -------VKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDI 654 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T A+ F I +V+ R+ K + + Y GL Sbjct: 655 HSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS---------DYGLSRD-------- 697 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 K+ + K+ V + ++ + Sbjct: 698 ---------------------------IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFA 730 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 ++ +R+ D+K L Sbjct: 731 RENG--------------------------FVLTIFNRKRYIKDIKSTNKNLRNYA---E 761 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R + +Q + DI+ M K I+L VHDE++ E+P Sbjct: 762 RIAM------NSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815 Query: 643 SVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL E E + Sbjct: 816 IVKEIVKSEMENAV--LLKVPLVVEVKEGSNW 845 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 97/648 (14%), Positives = 180/648 (27%), Gaps = 149/648 (22%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICT 96 D+ T + ++ L+ +TV V ++ L ++ K Sbjct: 335 DQESNTVFVTRDGHLVEEI---LKSDTVKIV-----YDLKNIFHQLNLEDTDNIKNCEDV 386 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + S + R K + ++ Sbjct: 387 MIASYVLDSTRS------SYELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLI 440 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 L + ER L + + G+++D D +L+ + I + Sbjct: 441 D---------------LNSCKFLYENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESK 485 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 KL+ I ++ G + L LF + ++ ++ T +L Sbjct: 486 ILKLETQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL+ + L +A++ GR+ T G + TGR + QN+P Sbjct: 545 IVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP- 602 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE R+LA I Sbjct: 603 -----------------------VKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHI 639 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ I AF N DI+ T A+ F I V+ E R+ K + + Sbjct: 640 SEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIV------------ 687 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A K+ + Sbjct: 688 --YGISDY------------------------------GLARDVKISRKEAAEFINKYFE 715 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + ++ +R+ D Sbjct: 716 RYPKVKEYLDNTVKFARDNG--------------------------FVLTLFNRKRYVKD 749 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 +K L R + +Q + DI+ M + I+L Sbjct: 750 IKSTNRNLRGYA---ERIAM------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIIL 800 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P V + M A +PL E E + Sbjct: 801 QVHDELLIEAPYEEKDIVKRIVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 101/684 (14%), Positives = 189/684 (27%), Gaps = 152/684 (22%) Query: 17 PKVGVWAYAEQAVIT------------LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 ++G+ A E I YA ++ +P L + L E Sbjct: 310 TEIGLIAAIEDGNILTKRIVRLYLLADSITYAVEE-----------ENIPK-LKELLERE 357 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEH 121 V +N E K GI +P + + + + + Sbjct: 358 NVFIYGNNLKREYTALK-PYGITLPKISF-DSQLAQYILNPSEVEQEPEKIGIKYGMPIV 415 Query: 122 L--TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + GK + + K E K L Sbjct: 416 SPNLEDLLGKGKKR---MSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQEEDTKFLFE 472 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E L + + G ++ D++ +L++ A+ + +++I L + Sbjct: 473 KI--ELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAGEEF-NINSPK 529 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T IL IL+ S + L Sbjct: 530 QLGVVLFEKLQLPVIKKTKTGYSTGAEILEKLYDKHPIISKILSYRQVSKLQSTYVIGLL 589 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 ++ + + + TGR S QN+P Sbjct: 590 SLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIP------------------------V 625 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +A G LV AD + IE RVLA +A E I+ F DI+ T ++ Sbjct: 626 RTEMGRELRKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEV 685 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F+ P+++V+KE R+ K + + Y Sbjct: 686 FSVPVEEVTKELRSAAKAVNFGIVYGISDFGLSNN------------------------- 720 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + A++ G+ + + + Sbjct: 721 -------------------LNITKKQAKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTT 761 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 RR ++K + +L Sbjct: 762 L--------------------------CGRRRYIPEIKSSNFIVKNMGKRL--------- 786 Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649 +Q + DI+ M K ++VL VHDE++ E + V + Sbjct: 787 AMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDELLLEVREDDAKYVRDKVIE 846 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 LM W+ +PLK + + Sbjct: 847 LMEGA--WSMDVPLKVDATIGDSW 868 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 92/630 (14%), Positives = 179/630 (28%), Gaps = 146/630 (23%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + + L+ E+V V ++ L + + + S Sbjct: 350 IEEILKSESVKIV-----YDLKNMFHELYLENTDNIRNCEDVMIASYVLDSTRS------ 398 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + + + + + E ++ + +L Sbjct: 399 SYELETLFMSYL---------------NTDLEAVKKDKKVTSVILLERLWDELSSLIDLN 443 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++ ER L + + G+++D D +L+ + I + L++ I ++ G + Sbjct: 444 SCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIA-GEWFN 502 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + ++ ++ T +L LIL+ + Sbjct: 503 INSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY 562 Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L +A++ GR+ T G + TGR + QN+P Sbjct: 563 CQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP------------------- 602 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ Sbjct: 603 -----VKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHS 657 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T A+ F ID V+ E R+ K + + G+ Sbjct: 658 QTAAEIFGVDIDDVTPEMRSQAKAVNFGIV--------------YGISDY---------- 693 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A K+ + ++ V + ++ + Sbjct: 694 --------------------GLARDIKISRKEAAEFINRYFERYPKVKEYLDNIVKFARE 733 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + R+ D+ + R Sbjct: 734 NGYVLTLFN--------------------------RKRYIKDINSTNRNTRSYA---ERI 764 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 + +Q + DI+ M + I+L VHDE++ E P V Sbjct: 765 AM------NSPIQGSAADIMKLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIV 818 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M A +PL E E + Sbjct: 819 KRIVKTEMENAV--ALKVPLVVEVKEGLNW 846 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 95/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + ++L + + ++ + K G+D Sbjct: 345 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + ++ + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 97/648 (14%), Positives = 183/648 (28%), Gaps = 149/648 (22%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICT 96 D+ T + ++L+ + + +++ L ++ K Sbjct: 335 DQESNTVFITSNKLLIEEILK----SDTVKI----MYDLKNIFHQLNLEDTNNIKNCEDV 386 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + S L S T +E K K + ++ Sbjct: 387 MIASYVLDSTRSSYEL-ETLFVSYLNTDIEAVKK-----DKKIVSVVLLKRLWDELLRLI 440 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 L + ER L + + G+++D D +++ + I + Sbjct: 441 D---------------LNSCQFLYENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENK 485 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 KL+ I ++ G + L LF + ++ ++ T +L Sbjct: 486 ILKLETQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL+ + L +A++ GR+ T G + TGR + QN+P Sbjct: 545 IVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP- 602 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE R+LA I Sbjct: 603 -----------------------VKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHI 639 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ I AF N DI+ T A+ F I V+ E R+ K + + Sbjct: 640 SEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIV------------ 687 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A K+ + Sbjct: 688 --YGISDY------------------------------GLARDIKISRKEAAEFINKYFE 715 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + ++ +R+ D Sbjct: 716 RYPKVKEYLDNTVKFARDNG--------------------------FVLTLFNRKRYIKD 749 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 +K L R + +Q + DI+ M + I+L Sbjct: 750 IKSTNRNLRGYA---ERIAM------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIIL 800 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P V + M A +PL E E + Sbjct: 801 QVHDELLIEAPYEEKDIVKEIVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 15/332 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M KL ID+ET S L K GV+ YAE I L AY+ DD VK+ D + +P ++L Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+++ A N+ FER+ + LG + + W CT + + GLP SL+ L Sbjct: 61 SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 KM EGKALI F CK + + +H ++ W F EY +RDVE E+ Sbjct: 121 --DKQKMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+ E + + +DQ INDRG ID LV + R++ + ++LT Sbjct: 179 KKLSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTGLE- 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +++ ++S L ++ K+++ R S S++ K Sbjct: 238 -NPNSPMQLKEWLNEK-GLEIDSLAKKDVESALKNAEGD--IKEVLELRQELSKSSVRKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + + +D R+RG LQFYGA+RTGR+ Sbjct: 294 DAMKNVKGNDKRVRGLLQFYGANRTGRYCLTG 325 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 116/411 (28%), Positives = 175/411 (42%), Gaps = 67/411 (16%) Query: 281 RLASSGSAILKLNTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + + A++ G G SG + Q QNL R + Sbjct: 592 HQIQRKAKKIDYTGMVYCAMTPTGFFLVRRN--GRVWVTGNSGRLIQVQNLRRNNLQDLD 649 Query: 340 LTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 L +++ E+ P + S +R+ I G + +V+D + IEARVLAW+AGE Sbjct: 650 LARSLVRNKEYESLEMLYDSPSDVLSQLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGE 709 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTP--IDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 DW + AF NGEDIY +T ++ F P V+ + R GKV LA GY G K M Sbjct: 710 DWVLNAFKNGEDIYCSTASQMFGVPVVKHGVNGDLRQKGKVATLACGYGGSVGALKAMG- 768 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 A++ L + + +WR Sbjct: 769 ---------------------------------------AIEMGLSEDELQSIVDSWREA 789 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + ++ LW D+ VV+ R LV+ K + I LPS RRL Y Sbjct: 790 NPNIVSLWWDIDSVVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKA 843 Query: 574 KGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 K + + ++ + +YGGK ENIVQAI+RDIL E M K G++I Sbjct: 844 KIGMNRFGGESIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNI 903 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ +HDE+V E+ + + +M+ PSWA GL L A+G+E++ Y+K Sbjct: 904 VMHIHDEVVIESDSSSIEE---INEIMSLVPSWAPGLILDADGFESEFYKK 951 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 95/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + ++L + + ++ + K G+D Sbjct: 345 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + ++ + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 97/660 (14%), Positives = 190/660 (28%), Gaps = 132/660 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I D V + + + + P +L+++L ++ +++ + + ++ Sbjct: 331 ADILKFGIQADGHFV-VINAEQINDYP-ELVEWLENDQTRKRVYDAK---KTYAEAHRLN 385 Query: 88 IPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPP 144 I K + + S+ + ++ + + + Sbjct: 386 IDIKNVSFDIMLASYILDPSRSIDDVYSVVHNYGQNYVAEEVNIYGKGRKRQIPEDEVLD 445 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + Y + + +LF+ L E L + + + G D+D Sbjct: 446 TYIASILDAISESTPIMYDQLEEFNQLDLFESL------ELPLARILGEMEELGIYTDVD 499 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + ++++ I + L I + L + LF + ++ ++ T Sbjct: 500 ELKEMEKEIQGKLDTLITRIHDAAGEDF-NINSPKQLGVVLFENLKLPVIKKTKTGYSTA 558 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L D IL S + L + + +D R+ A +TGR S Sbjct: 559 VDVLEQLQGEHPIIDDILEYRQLSKLQSTYIEGLQKVIQNDHRIHTHFNQTLA-QTGRLS 617 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380 QN+P +R G ++ AD Sbjct: 618 SVDPNLQNIP------------------------VRLEEGRRIRKAFKPAEPGNVILSAD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA I ++ IKAF G DI+ T K F D+V R K + Sbjct: 654 YSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRRQAKAVNF--- 710 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ SQ+ + Sbjct: 711 -----------GIVYGISDYGLSQS------------------------------LGITR 729 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 A + + GV Q D+ + + R +P + R R Sbjct: 730 KAAKQFIDDYLDSFPGVKQYMSDIVKDAK--AKGYVETLLHRRRYIPDITSRNFNR---- 783 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 + + +NT +Q + DI+ M N K Sbjct: 784 -----------RSFAERTAMNT------------------PIQGSAADIIKLAMVNFDKE 814 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + + +M +PL+ + + Sbjct: 815 IKNKDFHAHLLLQVHDELIFELPEEEVEAFSAFIEDIMDNAID--LDVPLQVDTNYGPTW 872 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 85/644 (13%), Positives = 178/644 (27%), Gaps = 133/644 (20%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D ++ L L+ ++V N+ + + + LGI + + + + + Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENINF-DLLLASYLLN 411 Query: 105 LPSSLKNA---CLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + + + + + GK P D T +H+ Sbjct: 412 TNDNSNDLGQVAQEHGYDDVRTDEEVYGKGAKR-------AVPDDDETFFSHLATKARAI 464 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 E ++D+ A + K+ +D E L + + G +D + + + + ++ Sbjct: 465 EQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEI 524 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDL 277 + I + + T L LF + ++ ++ T +L + Sbjct: 525 ESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQ 583 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 IL + + L + + S+ + T ++TGR S QN+P Sbjct: 584 ILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP------ 637 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396 +R + G ++ +D + +E RVLA I G+ Sbjct: 638 ------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDK 679 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + F NGEDI+ +T + F+ D Sbjct: 680 NLQEDFKNGEDIHASTARRIFHLAPD---------------------------------- 705 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + +A + + A + + + + + G Sbjct: 706 ---------AEIDRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPG 756 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + D RR D+ Sbjct: 757 VKKYINDTIAFAKENGYVETITH--------------------------RRRYLPDIHAK 790 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHD 630 + + +Q + DI+ M ++L +HD Sbjct: 791 SFNKRSFAERT---------AMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHD 841 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P + L +M +PLK + + Sbjct: 842 ELVFEAPKEEIPVLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883 >gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] Length = 865 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 88/659 (13%), Positives = 171/659 (25%), Gaps = 137/659 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A D+ + ++ + ++ +K Sbjct: 326 DIIGFGIATPDQ----IYVASAELVDDPAFRDWIES-DHQKICLDAKQAAFALRKH---G 377 Query: 88 IPSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L L + + GK + P Sbjct: 378 LKLTAFDDLLLAGYLLNLSGGTTLASIAGHYMLMAPNEEAVLGKGAKRLAPADDVLHPYL 437 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + E + EL++ L ER L + + G R+D+ Sbjct: 438 AEKARMIELLFPKVKE--ELKANQQFELYETL------ERPLSGVLAEMEWTGIRVDVGT 489 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++Q +A L++ I + L + LF + ++ T Sbjct: 490 LQEMQHDLAGRLHDLEQLIYGEVGEEF-NINSPKQLGVILFEKMELPAFKKTKTGYSTAA 548 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L D I+ + L + + DG++ A +TGR S Sbjct: 549 DVLEKLRPLHPVIDHIMLYRELQKLQSTYVEGLQKVIKEDGKIHTRFAQTIA-QTGRLSS 607 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G L AD Sbjct: 608 VNPNLQNIP------------------------VRIEEGRKIRKAFVPSEPGWSLYAADY 643 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RV+A ++ + ++AF + DI+ T + F + V+ R K + + Sbjct: 644 SQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFGII- 702 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 703 -------------YGISDYGLSQN------------------------------LNISRK 719 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + E + + Sbjct: 720 EAQDFIDRYFELFPQIKLFMDAAIEKAR--------------------------MNGFVE 753 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 +RR D+ L R +Q + DI+ + M + Sbjct: 754 TLMNRRRNIPDINSKNFNLRGFA---ERTAI------NTPIQGSAADIIKKAMLDVHAAL 804 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E PD ++ TL M + +PL+ +G + Sbjct: 805 EQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQTVQ--LSVPLRVDGDAGHSW 861 >gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713] Length = 892 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 90/672 (13%), Positives = 188/672 (27%), Gaps = 118/672 (17%) Query: 12 SPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 S + E A I + D+ L + L + V Sbjct: 325 SDNDEIVFNLEIDGENYHTAEIIGFSIKIGDK--YLVSDDIDLLKKKQIKNLLESDEVEV 382 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + + + + LG+ + + +++ + + L +H E Sbjct: 383 DLFDGKRQYVGLNR-LGVTLSKINF-DLLLVSYLLDNSENSNDLG--LLAQQHEYYDVES 438 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 I P H+ K + E ++L + ER L Sbjct: 439 DEQI-YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLS 497 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 ++ + G ++D + + +Q + + +L+++I + L + LF Sbjct: 498 IVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEK 556 Query: 249 TGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304 + ++ ++ T +L D IL + + L + VS DG+ Sbjct: 557 LKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGK 616 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + TGR S QN+P + Sbjct: 617 AHTRYTQT-LTSTGRLSSVDPNLQNIP------------------------VRLEEGRKI 651 Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-ID 422 R + G ++ +D + IE RVLA I+ + +AF G DI+ +T + FN D Sbjct: 652 RQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPD 711 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + + Y + + + + + + + + Sbjct: 712 EVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYM 766 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + E + + R + +L Sbjct: 767 EKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFNLRSFAER------------ 805 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + +N+ K+ + Sbjct: 806 -----------------------------------TAMNSPIQG---SAADIIKVAMINM 827 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 Q ++L E ++L VHDE++ E P + + +M + Sbjct: 828 Q----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVMDSAVK--LDV 876 Query: 662 PLKAEGYEAKRY 673 PLK E + + Sbjct: 877 PLKVESKHGQTW 888 >gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2] gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2] Length = 881 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 88/660 (13%), Positives = 184/660 (27%), Gaps = 138/660 (20%) Query: 33 CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFE----RILFKKTL 84 AW ++ D E + L + V ++ + + Sbjct: 337 VGVAWGNQQKIYVTNQDDLFENEYFIAWLKNA---SSQKKV-----YDAKRTYVALNRYA 388 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKN---ACLALN-FSEHLTKMEEGKALIARFCKGSI 140 P T + A S + ++ + GK + Sbjct: 389 --AAPQGIVFDTLLAAYLLDTNDSNNDIAGVAKHYGFYAIQSDEAIYGKGVKR------- 439 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 P + H+ Y + + +D E L + + G R Sbjct: 440 GLPADEEVFFAHLARKVAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIR 499 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + +++ A+ ++++ I + + L + LF G+ ++ ++ Sbjct: 500 VDASRLHQMKGEFAERLHEIEQKIYQEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTG 558 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L + IL + + L + + DG++ ++T Sbjct: 559 YSTAVDVLEQLKEQAPIVEDILIYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQT 617 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + + Sbjct: 618 GRLSSVDPNLQNIP------------------------IRLEEGRKIREAFVPRAKDWVI 653 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 +D + IE RVLA I+ ++ AF G+DI+ +T + F ++V+ R K + Sbjct: 654 YSSDYSQIELRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMRRQAKAV 713 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + + + FE + +++ + + + Sbjct: 714 NFGIVYG-----ISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYV 768 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRH 554 + L R + +L + SA + + + + Sbjct: 769 ETLYHR---------RRYLPDINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLD-- 817 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RRL + QA Sbjct: 818 -----------RRLKEEKL-----------------------------QAT--------- 828 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ + L +M S +PL + K + Sbjct: 829 ---------MLLQVHDELVFEVPEDELERLDALVKEVMENAVS--LHVPLLTDSNWGKTW 877 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 89/649 (13%), Positives = 181/649 (27%), Gaps = 145/649 (22%) Query: 38 DDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + E V +++ + L +L +E + + HN F ++ K+ G+ R T Sbjct: 344 NGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY-GLKFDGVR-GDT 401 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 +L+ S + L + + Sbjct: 402 LLLSYVLDPGFSGETLSEHLFH---------------YLGEVVDEK--------MDPGLA 438 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + + +E + E L + + G ++D ++ ++ + +A Sbjct: 439 VRGLKKLHQVLEEKLGSQDLVNLYKVVELPLSPVLADMEFTGIKVDPRILAEISQELALR 498 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 + I ++ + T L LF G+ V ++ T +L + Sbjct: 499 IAEDQARIYQVAGQEF-NINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELYGSHE 557 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + I+ + ++T + GR+ + + TGR S QN+P Sbjct: 558 IIEHIVEYRTLAKLKSTYVDTFPGYIHPETGRVHTVFKQAV-TATGRLSSVEPNLQNIP- 615 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391 +R + L+ D + I+ R LA Sbjct: 616 -----------------------IRMEEGRRIRKAFVPGDENHILLSCDYSQIDLRSLAH 652 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G++ I+ F G DI+ T ++ F P+D+V+ + R K + Sbjct: 653 MSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNF-------------- 698 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ A + + + + Sbjct: 699 GIVYGISDF------------------------------GLARGTGVTREEAKAYIERYL 728 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + GV + +++ + RR Sbjct: 729 DSYPGVRRYMQEVVAMGREKGYVSTVL--------------------------GRRRYLP 762 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 D+ T S R +Q S DI+ M + + ++ Sbjct: 763 DLLSSN---RTVRSMAERMA------LNAPIQGTSADIIKLAMLSVYRELKRRNLRSRML 813 Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L VHD++V E P V L M +PL+ E + Sbjct: 814 LQVHDDLVFEVPLEELEEVALLVRDCMENAFE--LKVPLEVEVKVGANW 860 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 95/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + ++L + + ++ + K G+D Sbjct: 331 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 388 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPGLE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 443 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFEDLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + ++ + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3] gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3] gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5] gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12] Length = 1032 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 153/440 (34%), Positives = 229/440 (52%), Gaps = 16/440 (3%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R++ K G ++ + I T ++A + LP SL + Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T A H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + L+ + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILQELAPAHR---IHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K L SSD R RG LQ+ GA RT RW+G FQPQNL R ++ L + I AL + Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357 Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G+K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKE 427 IY T K F D + KE Sbjct: 418 IYCVTAGKMFGMDPDDIKKE 437 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 122/289 (42%), Gaps = 45/289 (15%) Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 EL LGY+GG F T A + GLDL + ++ + T W + W + Q + Sbjct: 744 AHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAK 803 Query: 492 FA------------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--- 536 + DK + C+ +K+ WR H + W+DL +G V+ G Sbjct: 804 RPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREF 863 Query: 537 ------------SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV----------- 573 +I R + + + LPS R L Y + Sbjct: 864 WAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDED 923 Query: 574 -------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + N T Q T+GGK ENIVQA+ RD+L M N GY IVL Sbjct: 924 GRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVL 983 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +VHDE+V ETPDTP ++V L LM P WA G PL AEG E KRY K Sbjct: 984 SVHDELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032 >gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028] Length = 876 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 193/652 (29%), Gaps = 128/652 (19%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKR 92 + + + E L+Q+L D+ + +++ + + LGI+I + Sbjct: 336 FGFYTNHQHVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKKTY---VSAHRLGINIENIE 392 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + S+ + ++ K I F KG P + H Sbjct: 393 F-DVMLASYIIDPSRSIDDVKSVVSLYGQNY----VKDNITIFGKGKKHHIPEEPILNEH 447 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + +++ E + + L D E L + + + G D++ + +++ Sbjct: 448 IASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDINDLKEMEFE 507 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 I ++ L +I + G + L + LF + ++ ++ T +L Sbjct: 508 IQKKLDVLISNIHESA-GEAFNINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEKLQ 566 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D IL + + L + +S D R+ A +TGR S QN Sbjct: 567 GEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSIDPNLQN 625 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388 +P +R S ++ AD + IE RV Sbjct: 626 IP------------------------IRLEEGRKIRKAFKPTSKDSVILSADYSQIELRV 661 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 662 LAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNF----------- 710 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ SQ+ + + Sbjct: 711 ---GIVYGISDYGLSQS------------------------------LGITRKQAKAFID 737 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A GV Q D+ + + RR Sbjct: 738 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNL-------------- 783 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 + + +NT +Q + DI+ M ++ Sbjct: 784 ---RSFAERTAMNT------------------PIQGSAADIIKLAMVKFSEKIKETKYHA 822 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M + +PLK + + Sbjct: 823 KLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA--LVLDVPLKVDSNYGATW 872 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 91/631 (14%), Positives = 177/631 (28%), Gaps = 143/631 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L +++ V ++ + K K + + S Sbjct: 346 EAIKHLLTLQSIQKVVYDLK---NILHKVDFDETNQIKNCDDVMLASYVLDSTRS----- 397 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + I+ A + D+ + + + Sbjct: 398 -SYDLETLF---------ISYLNTDIAAIKENRWAGATVLLRNLWDELSKLIDLNSAQYV 447 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ + E L + + G+++D + + + + I + KL+ I ++ G Sbjct: 448 YESI------EMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIA-GEWF 500 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + +V ++ T +L LIL+ + Sbjct: 501 NINSPKQLSYILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTT 560 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L +A++ GR+ G + TGR + QN+P Sbjct: 561 YCQGLVQAINPVTGRIHTNFIQTG-TATGRLASAEPNLQNIP------------------ 601 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ Sbjct: 602 ------VKYDEGKLIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIH 655 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T A+ F I +V+ R+ K + + Y GL Sbjct: 656 SQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGIS---------DYGLSRD--------- 697 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 K+ + K+ V + ++ + Sbjct: 698 --------------------------IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFAR 731 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 ++ +R+ D+K L R Sbjct: 732 ENG--------------------------FVLTIFNRKRYIKDIKSTNKNLRNYA---ER 762 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 + +Q + DI+ M K I+L VHDE++ E+P Sbjct: 763 IAM------NSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEI 816 Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL E E + Sbjct: 817 VKEIVKSEMENAV--LLKVPLVVEVKEGSNW 845 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 100/654 (15%), Positives = 195/654 (29%), Gaps = 134/654 (20%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + I A D + E + S+L D+T+ ++ + E ++ L I Sbjct: 331 HSEIYSLAIKTKDTDTYII---EPEKI-SELKNIFEDKTINKISFDIK-EEMVLLDKLDI 385 Query: 87 DIPSKRWICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALI--ARFCKGSI 140 D+ + ++ S LK L + + GK Sbjct: 386 DL-IGPYDDLMLMHYLIDPSRSSYDLKLLSQSYLTYELDSDESLIGKGAKTKKYAEVDQD 444 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D ++ N ++ + V ++ + + E+ L + ++ G+ Sbjct: 445 DLAKLLASQVNAIED-------SRDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFG 497 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 D ++ L+ + ++ + + +I L + T L LF + +V ++ Sbjct: 498 TDRKILEGLKADLEKQIEAITSEIYDLAGSEF-NINSTKQLGEVLFKDLDLPVVKKTKTG 556 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L + I + L A+ DGR+R T + AS T Sbjct: 557 FSTDAKVLEKLRDKHPIIEKIERYREIYKLRSTYIEGLENAIDEDGRIRSTFRQNIAS-T 615 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QNLP +R A GK L+ Sbjct: 616 GRLSSQEPNLQNLP------------------------IKTDEGRAIRKAFKAGEGKILI 651 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA +A + AF G DI+ T ++ F+TP+D+V+K QR+ K + Sbjct: 652 DADYSQIELRILASLADDKNMQDAFNRGIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNF 711 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L++ + Sbjct: 712 GIIYG-----ISDYGLSQNLNIPRP----------------------------------- 731 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + ++ + + + D+ + Sbjct: 732 ----RAKEYIDKYKKSYPQIKEYMDDVVQLARSQGY------------------------ 763 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 I RR ++ + + ++ +Q + DI+ M + Sbjct: 764 --IETLFKRRRYIPEISSRNFNVRSFGERI---------ALNTPIQGTAADIIKIAMIDT 812 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664 I+L +HDEI+ E+ + + M L + Sbjct: 813 YNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAAKLKVDLLVD 866 >gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 936 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 96/675 (14%), Positives = 184/675 (27%), Gaps = 143/675 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFE 76 A I + D + + S L L +E + V + F Sbjct: 372 ANIISICLSIDTKESAYIPIKTDSINNHQNFLYLEEILSILQPTLENEKIKKVGQHLKFS 431 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + K+ I++ + + ++ + L+ K Sbjct: 432 YSILKRY-NINLAGMAF-DVILELYILYGTANYHDIKNFLDKDTFNVVTNFKKNYDNYNE 489 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ER 185 + +Q QL Y + +++ L L P + E Sbjct: 490 NNILS----------DLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEM 539 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I + G ID L+ + L+ + +L + T L+ L Sbjct: 540 PLISILSRIENYGVLIDKKLLNTHAVELDYRLHALELEAYQLVGTPF-NLASTKQLQEIL 598 Query: 246 FLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + + + + T + +L + +IL A S +N L ++ Sbjct: 599 YNQQKLPILKKTPKGAPSTNEEVLKKLSKKYSMPRIILQYRALSKLQSTYINKLIAMINK 658 Query: 302 D-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 R+ + + TGR S QN+P Sbjct: 659 KSNRVHTSYNQT-RTSTGRLSSTSPNLQNIP------------------------NRNYD 693 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R IA +V AD + IE R++A ++ + I F + +DI+ T ++ F T Sbjct: 694 GRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELINDFLSEKDIHTATASEIFVTA 753 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ EQR K + L Y L + F + Sbjct: 754 LHLVTDEQRQRAKTINFGLIYGMS-----AFGLARQLSVTCKEAQKYVDRYFNRYPGVMK 808 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSIS 539 + +++ ++ L G L + +G + S Sbjct: 809 YMQHIREHANKYGYVSTLDGRRLYL---------PDIYSANILQKKGAERAAINAPMQGS 859 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 A + + + + I Sbjct: 860 AADIIKKAMISIDNWLQKDEIP-------------------------------------- 881 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA 658 +R I+ VHDE+V E + V + LM + + Sbjct: 882 ------ARIIM----------------QVHDELVFEVHNDIVDPVVKKIKKLMEEC--FI 917 Query: 659 KGLPLKAEGYEAKRY 673 +PLK + K + Sbjct: 918 MDVPLKVDVGIGKNW 932 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 93/624 (14%), Positives = 191/624 (30%), Gaps = 131/624 (20%) Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSE 120 + + ++ E L ++ K + +L LK + LN Sbjct: 377 DIKIIGYDIKEE---LFFALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEI 433 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K GK + + + N +F D+ + LI L Sbjct: 434 LDLKEMLGKGKNKKTFFELEEDIIFKFISQN------VFAISALYDIFIEKAKENNLISL 487 Query: 181 SDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G +D + +++L E ++ ++ + +L G + + Sbjct: 488 YENVEKPLVKVLADMEKTGVLVDRNKIIELNEEYSKLAYLYEQKVYELA-GEVFNLNSPK 546 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF G+ +V ++ T +L + D IL + + L+ + Sbjct: 547 QLGVILFEKIGLPVVKKTKTGYSTDVEVLEKLSKKHEIVDYILKYRSLNKLISTYLDGIL 606 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 E + DGR+R + + + TGR S QN+P Sbjct: 607 EYIMDDGRVRTSFKQ-MITATGRLSSVDPNLQNIP------------------------I 641 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +A K + AD + IE RVLA ++ + I +F N DI+ T ++ Sbjct: 642 RSEEGKNIRKVFVADKNKVFIDADYSQIELRVLAHLSKDSVMIDSFKNDLDIHYKTASEV 701 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F PI++V+ QR K + + Y GL Sbjct: 702 FGVPINEVTDNQRRSAKAVNFGIVYGIS---------DYGLSKD---------------- 736 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + +++ Sbjct: 737 -------------------LNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKK------ 771 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 D + R+ ++ + + ++ Sbjct: 772 --------------------DGFVTTILDRKRYIPEINSKNFNIRSFGERI--------- 802 Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 +Q + DI+ M + ++L +HDE++ E ++ +V + + Sbjct: 803 ALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHDELIVECEESEKETVKKILKN 862 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 M + LPLK + E + + Sbjct: 863 SMENV--YKLDLPLKVDICEGRNW 884 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 194/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + ++L + + ++ + K G+D Sbjct: 345 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 402 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPGLE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D D + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + ++ + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] Length = 879 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 96/658 (14%), Positives = 196/658 (29%), Gaps = 133/658 (20%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L +A +E + E + ++++DET +S + + D+ K Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391 Query: 92 RWI-CTSVLARTNGLPSSLKNAC---LALNFS-EHLTKMEEGKALIARFCKGSIDSPPYD 146 + + S ++ + + GK + + Sbjct: 392 GVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDEKVYGKGAKQAIP-PEDELKGHL 450 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +A + A + EL++ L E L L+ + G ++DL + Sbjct: 451 GRKAAAISALHDLTLEALEKND-QHELYEDL------ELPLALILGEMESLGVKVDLKRL 503 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 K+ E + ++ K+ +E I +L G + L + LF G+ ++ ++ T Sbjct: 504 EKMGEELTKKLKEYEETIHRLA-GETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSAD 562 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL+ + L + D T ++TGR S Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLSST 622 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R + G + AD + Sbjct: 623 DPNLQNIP------------------------IRLEEGRKIRQAFVPSKEGWLMFAADYS 658 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ ++ I+AF DI+ T F+ ++V+ R K + + Sbjct: 659 QIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIV-- 716 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN+ + Sbjct: 717 ------------YGISDYGLSQNL------------------------------GITRKE 734 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + +GV +++ + + +R +P + R Sbjct: 735 AAAFIERYLTSFKGVKTYMEEIVQEAKQKGYV--TTLLKRRRYIPDITSRNFN------- 785 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 + + +NT +Q + DI+ + M + + Sbjct: 786 --------IKSFAERTAMNT------------------PIQGSAADIIKKAMIDMARRLK 819 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ E P + + +M +PLK + + Sbjct: 820 EENLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 98/663 (14%), Positives = 179/663 (26%), Gaps = 130/663 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLFERIL 79 + A+A + + L + + AH+ Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPPDVREGLRPLVE-AALPLHAHDLKAAAHA 399 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LG+ T +++R +L + ++ A A+ Sbjct: 400 LAR-LGLARSGPG-EDTELMSRLLLPTRREHALVDVAR----ERTSCELPRSPADGAKRG 453 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTIN 195 ++ + A + + E E L + ER L + + Sbjct: 454 APGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR--EVERPLVPVLVEME 511 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G +D + + + + L+ I + T L LF+ + +V Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF-NVASTRELAQVLFVELELPVVK 570 Query: 256 ---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311 T + +L L+L + S ++ L + V DGR+ T Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQ 630 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA TGR S QN+P S +R +A Sbjct: 631 AGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRQAFVAP 665 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G +L+ AD + IE R+LA + + ++AF + ED++ T A+ F ++V+ +QR I Sbjct: 666 AGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRI 725 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 KV+ + Y LDL F + + W ++ Sbjct: 726 AKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARA 780 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 L G A + L Sbjct: 781 KGESRTLFGRA---------RAMPEIGAPNPALRNAAERTAINTPIQGTAADIV------ 825 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 ++ V + A Sbjct: 826 ---------------KIAMIRVHDALAQERRAAR-------------------------- 844 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670 ++L VHDE+V E P+ V L M +PL+ + Sbjct: 845 ------------LLLQVHDELVLEVPERELEPVEALVRREMEGAAR--LKVPLEVQVGHG 890 Query: 671 KRY 673 + + Sbjct: 891 QTW 893 >gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] Length = 886 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 86/655 (13%), Positives = 177/655 (27%), Gaps = 129/655 (19%) Query: 32 LCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + D V + D P L L + + + + L + + Sbjct: 344 GFSLKVGD-KVYVSKDIALLQEKP--LKDILENRKIQKDVFDLK-RMTVGLHRLDVIVEG 399 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + + + + + K + + KG + P D Sbjct: 400 LNY-DMLLASYLVNNEKNSNDLGEIAHL----YDEYSIKTDLEVYGKGKKQAIPEDKEFF 454 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ A E K ++ + ++ E + + G +++ +++LQ Sbjct: 455 KHLAAKVCVIEKLKPELLKQLKEHEQDDLFETIEIPTARVLAKMEINGIKVEASTLIELQ 514 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 A + K+L++ I K + L LF + ++ ++ T +L Sbjct: 515 NEFAVKLKELEDKIYKQAGEEF-NLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQ 573 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 IL+ + + L + + DGR+ + TGR S Sbjct: 574 LKTQSPIVSEILDYRQIAKIQSTYVKGLLDVIQRDGRVHTRYLQT-LTATGRLSSVDPNL 632 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEA 386 QN+P +R + + D + +E Sbjct: 633 QNIP------------------------TRTEEGKQIRKAFVPSEPDGYIFSCDYSQVEL 668 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGA 445 RVLA ++G+ +AF G DI+ T + F+ D+V+ R K + + Y Sbjct: 669 RVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVY---- 724 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 L + + Sbjct: 725 -GISDYGLSKNL---------------------------------------GISRKRAKE 744 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + ++ + + + Sbjct: 745 FIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMH-------------------------- 778 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR D+ T S R + +Q + DI+ M N K Sbjct: 779 RRRYLPDIHAKKF---TVRSFAERTAI------NSPIQGSAADIIKIAMINMQKKLDELH 829 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +V+ VHDE++ + P ++ + +M +PL A+ + Sbjct: 830 LKTKMVIQVHDELIFDVPKDELETIKKIVPEIMQSAVK--LDVPLIADSGWGHNW 882 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 180/659 (27%), Gaps = 125/659 (18%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TL 84 Q I A A + + + E ++ D+ ++ R + Sbjct: 330 HQGSIIGVAIANETG-IYYVEAEEALT-SDVFKKWAEDDQKEIYTFDAK--RTVVALGWA 385 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE----HLTKMEEGKALIARFCKGSI 140 GID+ + + + + S N + GK Sbjct: 386 GIDLSNTTF-DIQMASYLIDPASGSHEIADIANRKNGIQVQTDEAVYGKGKKQ------- 437 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + P + H+ K+++E ++ D E L ++ + G Sbjct: 438 -AIPEAEELSQHLGRKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVS 496 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + + + + + KL++ I + G + L LF G+ ++ ++ Sbjct: 497 VDQQELETIGKDLTERLAKLEQQIYEAA-GQSFNINSPKQLGKVLFEDLGLPVLKKTKTG 555 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 T +L D IL + L + + G++ ++ Sbjct: 556 YSTSADVLEKLKGEHDVIDHILFYRQLGKLNSTYIEGLLKVIHPKTGKIHTIFNQAV-TQ 614 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R + G K Sbjct: 615 TGRLSSTEPNLQNIP------------------------VRLEEGRKIRRAFVPSKPGSK 650 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L AD + IE RVLA I+ ++ I AF G DI+ T + F ++V+ E R K + Sbjct: 651 LFAADYSQIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAV 710 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + FE + +++ + + E Sbjct: 711 NFGIVYG-----ISDYGLSQNLGISRKKAQTFIDKYFESYPGVKTYMEDIVAEAREQGYV 765 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 ++ R + + + Sbjct: 766 TTMLQR---------RRYLPDLTSRNFNQRSFAERTAMNTPIQGSAADIIKK-------- 808 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + ++L R+ L M Sbjct: 809 -----------------------AMVDMATELERQN------------------LKSVML 827 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P+ ++ L +M +PL + + Sbjct: 828 ----------LQVHDELIFEVPEDEIETMEKLVKDVMESTIE--LNVPLITDMATGDTW 874 >gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2] gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2] Length = 658 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 157/703 (22%), Positives = 275/703 (39%), Gaps = 83/703 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 LF+D E S L G+ Y + + ++ D E +P +L ++ Sbjct: 8 LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWELGQPIPRQILAHIA 67 Query: 63 DETVMCVAHNSLFERILFK----KTLGIDIPS----KRWICTSVLARTNGLPSSLKNACL 114 VAHN+ F+ +++ + + D+P + C++ AR NGLP L A Sbjct: 68 -AGKTFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRAAE 126 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL K EG A + + T A H + + +Y D + L+ Sbjct: 127 ALGLPLQ--KDREGAAAMKELMHNP------EWTPATHPELFARTYKYALLDTDVMVALW 178 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + P+ E+ W LD IN RG+ +D++ + E+ + +D ++ T G I + Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + ++ + G +L + ++K++L+ ++ ++ +D++ RL +S + Sbjct: 239 TSVIKQIQSFAAG-LGAELDEAGRESVKALLTRDDVPEVLRDVLTLRLDASRAPKKHDAI 297 Query: 295 LSEAVSSDGRLRGTLQFYGA--SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNRG 350 L V+ GR+ + ++GA R+ Q N+ PR R + + A R Sbjct: 298 LRAHVN--GRMCHSTVYHGALSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYLDAARRR 355 Query: 351 ETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + + R A + G LVVADL+GIEAR W+A ++ + + Sbjct: 356 DYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLVEY 415 Query: 403 ANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 G D Y A F+ P D V+ +QR IGK+ LAL + GG MA GL+L + Sbjct: 416 EQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLELSE 475 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + ++R H + W Sbjct: 476 ---------------------------------------DLRRKIVWSYRESHPALSTWW 496 Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 L + + G + R + + LPS R + Y + + Sbjct: 497 ASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVLEP 556 Query: 575 GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 G + + T K+ N+ Q ++RD+ E M + IV V+DE++ Sbjct: 557 GASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPVE-QIVHHVYDEVI 615 Query: 634 SETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P+ + L + ++K P WA GLPL AEG+ + +RK Sbjct: 616 LEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84 + + + ++L D + + +F L Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138 G+ +P + + + + + + + GK + + Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + LF + ++ L +D E L + + +G Sbjct: 447 DKLFGQFARKSD------ALFALRPDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQG 498 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ + + +Q K L+E I + L LF + ++ ++ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L+ IL+ + + L +A D ++ + Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 +TGR S QN+P ++ +R + G Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + Y + + + F+ + + + M + E Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + L R + +L + Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + +NT K+ +Q Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817 Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K + G ++L VHDE++ E P+ + L +M +PLK E + Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874 Query: 671 KRY 673 + Sbjct: 875 PTW 877 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 95/659 (14%), Positives = 196/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + + +L + + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E + K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELVGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 887 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 95/659 (14%), Positives = 196/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + + +L + + ++ + K GID Sbjct: 331 ADIQGFGIQNENG--CYFIQKDIALASDAFKAWLANGEMRKHTFDAKRAIVALKWN-GID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 388 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 442 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 443 VVAEH-VARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E + K+++++I KL + L + LF + ++ ++ T Sbjct: 502 RNMGEELVGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 561 VLDKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 620 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 656 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 714 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 715 -------------YGISDYGLSQN------------------------------LGITRK 731 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + +D+ + + R +P + R Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 784 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 785 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 816 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 817 EEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VPLKVDYSYGPTW 873 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84 + + + ++L D + + +F L Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138 G+ +P + + + + + + + GK + + Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + LF + ++ L +D E L + + +G Sbjct: 447 DKLFGQFARKSD------ALFALRPDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQG 498 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ + + +Q K L+E I + L LF + ++ ++ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L+ IL+ + + L +A D ++ + Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 +TGR S QN+P ++ +R + G Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + Y + + + F+ + + + M + E Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + L R + +L + Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + +NT K+ +Q Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817 Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K + G ++L VHDE++ E P+ + L +M +PLK E + Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874 Query: 671 KRY 673 + Sbjct: 875 PTW 877 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 197/659 (29%), Gaps = 129/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + RT+ + ++L D + ++ + K GID Sbjct: 345 ADIQGFGIQNENG--CYFIRTDIALKSDAFKEWLADGEMRKYTFDAKRAIVALKWN-GID 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + A + + + K+ + KG+ + P Sbjct: 402 MQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 456 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 457 VVAEH-VARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 516 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 574 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 575 VLEKLMDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 633 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 634 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 669 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 670 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIV- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 729 -------------YGISDYGLSQN------------------------------LGITRK 745 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 746 AAAEFIEKYLESFPGVQEYMSDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 798 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NA 617 + + +NT +Q + DI+ + M Sbjct: 799 ----------RSFAERTAMNT------------------PIQGTAADIIKKAMIIMADRL 830 Query: 618 TKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M +PLK + + Sbjct: 831 EEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHAIELV--VPLKVDYSYGPTW 887 >gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22] gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22] Length = 886 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 184/661 (27%), Gaps = 137/661 (20%) Query: 30 ITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + + D + + D P L Q L D+ + N F+ + L Sbjct: 342 LEGFSLKVSD-KIYVSKDVVLLQEAP--LRQMLEDKKIKK---NV-FDIKRTYVGLHRLD 394 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 ID + + + ++ + + K + + KG + P Sbjct: 395 IDAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAVPE 449 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 D H+ A E K+ + + ++ E + + + G +++ + Sbjct: 450 DDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASV 509 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + +L A + ++L+ I + + L LF + + ++ T Sbjct: 510 LNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLNLPPIKKTKTGYSTSV 568 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + IL+ + + L E + D R+ + TGR S Sbjct: 569 EVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDSRIHTRYLQT-LTATGRLSS 627 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVAD 380 QN+P +R + +G D Sbjct: 628 VDPNLQNIP------------------------TRTDEGKQIRKAFVPSTKDGYIF-SCD 662 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + + Sbjct: 663 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGI 722 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + Sbjct: 723 VY-----GISDYGLSKNL---------------------------------------GIS 738 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + ++ + + + Sbjct: 739 RKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH-------------------- 778 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ + + R + +Q + DI+ M N K Sbjct: 779 ------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQK 823 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 +VL VHDE++ + P ++ + +M +PL A+ Sbjct: 824 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 881 Query: 673 Y 673 + Sbjct: 882 W 882 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 99/662 (14%), Positives = 188/662 (28%), Gaps = 135/662 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + + +L + + ++ + K G+D Sbjct: 345 ADIQGFGIQNENG--CYFISADIALKSDAFKAWLANAEMRKHTFDAKRAIVALKW-KGVD 401 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP 143 I + + A + K+ E + GK +D Sbjct: 402 IQGIDF-DLLIAAYLLDPADTDKDFRAVAKMKETHAVKSDEEVYGKGAKR--AVPELDVV 458 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R HV + ELF L E L + + +G ++D Sbjct: 459 AEHVARKVHVLYDVKQTFIEELKKNEQYELFTEL------ELPLARVLADMEVKGVKVDT 512 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 513 ERLRNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYST 571 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L IL+ + L + V D ++ ++TGR Sbjct: 572 SADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G + Sbjct: 631 LSSTDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYA 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K + Sbjct: 667 ADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFG 726 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + G+ SQN + Sbjct: 727 IV--------------YGISDYGLSQN------------------------------LGI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 A + + GV + ++ + R +P + R Sbjct: 743 TRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYV--VTLLNRRRYIPEITSRNFNL-- 798 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 + + +NT +Q + DI+ + M Sbjct: 799 -------------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMA 827 Query: 616 -NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + G ++L VHDE++ E P + L +M A +PLK + Sbjct: 828 DRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGP 885 Query: 672 RY 673 + Sbjct: 886 TW 887 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 174/640 (27%), Gaps = 141/640 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEDNIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRREAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR + IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRR-------YIPEANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V L M +PL + + + K Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] Length = 929 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 94/659 (14%), Positives = 168/659 (25%), Gaps = 150/659 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 +T A + + + + + + + L D TV H++ G+ Sbjct: 406 PQVTSVALSSREGAARAVEL--KGESGEVVRRALADPTVPKAVHDAK-----AAMHAGLP 458 Query: 88 IPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + S T + + LN Sbjct: 459 LESVE-HDTMLYEYLLDPTYTTYRLPDVVLRRLNLK----------------------LA 495 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 A+ D + D +R L + + G ++D Sbjct: 496 GTLPEAADMTHRLTTKLHKLVEDG-------GLMKVYEDIDRPLVTVLYAMEAAGVKLDC 548 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSE 258 D++ ++ + ++ L I L+ + L LF + + Sbjct: 549 DVLAEMSTRLQRDADALARKIYGLSGQEF-NINSPKQLGDVLFNKLNLPKPVKYGKGKTI 607 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 T +L L+L + ++ L + GRL T A+ T Sbjct: 608 STAVDVLEGLAGEHEVPKLVLEYRQFTKLKSTYVDALPNLCHAGTGRLHTTFAQA-ATST 666 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ +A G L+ Sbjct: 667 GRLSSVNPNLQNIP------------------------IRTELGREIRAAFVAEKGNVLL 702 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA + + + A+ N DI+ T ++ F P + E R K + Sbjct: 703 AADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKAVNF 762 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L + S FE + + +Q + Sbjct: 763 GIVYGISP-----FGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLEQVRKDEKVST 817 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 L G + + +L Sbjct: 818 LFGRIRPI---------PDIHSRNPNLRGFAERTATNTPLQGTAADLI------------ 856 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 +L + RD++ Sbjct: 857 ---------KLAMIRIH--------------------------------RDLIER----- 870 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN-PSWAKGLPLKAEGYEAKRYR 674 K ++L VHDE+V E P V L M P +PLK + K +R Sbjct: 871 -KLKTRMLLQVHDELVFEVPQAEVEEVRALVQDRMENVHPE--LTVPLKVDVGVGKNWR 926 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 108/657 (16%), Positives = 191/657 (29%), Gaps = 133/657 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I ++DE L YL+DET ++ ++ + G++I Sbjct: 327 ILGYGI-YNDEQAYFISYENALK-DESFLAYLKDETKKKYGYDIK-SAVIGSRWNGVEIN 383 Query: 90 SKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + S+ + LK C ++ E F KG+ P D Sbjct: 384 GYTF-DLSLASYVLEPAIKEELKYVCTHFDYDGVQYDEEV-------FGKGAKKHIPDDA 435 Query: 148 TRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H + Y +DV + K+ D E + + + G IDLD++ Sbjct: 436 LLAQHTVSKAKAI-YELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVL 494 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++ E + +KL DI +++ G + L LF G+ ++ T + Sbjct: 495 KEMDEAFDETIEKLSNDIYRIS-GTTFNISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQD 553 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L L+L + + L L E V D ++ + + TGR S Sbjct: 554 VLEKIIDAHPVVPLVLEYRMLTKLSSTYLKGLQEQVFPDNKIHTIYKQT-LTHTGRLSSV 612 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R ++ NG LV D + Sbjct: 613 DPNLQNIP------------------------VRSEEGKLIRKAFVSHNGY-LVSFDYSQ 647 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA +A I AF G+DI+ T A F ++V+ + R+ K + + Y Sbjct: 648 IELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGM 707 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + Sbjct: 708 -----SEFRLSKDIGMSIA---------------------------------------EA 723 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + V ++ E ++ Sbjct: 724 RNFINKYFETYPEVKTYMDEVVEVCKKQGYVSTLLN------------------------ 759 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 R+ + + + +Q DIL M K Sbjct: 760 --RKRYIPTINDKNFMVRQQAQRY---------AMNTPIQGTGADILKLAMIEVDKALKV 808 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ + + V +L M +PL EG AK + Sbjct: 809 HHLKSQMILQVHDELIFDVFEDELEEVMSLVKEKMENCIK--MDVPLIVEGNYAKNW 863 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 99/658 (15%), Positives = 194/658 (29%), Gaps = 127/658 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + + ++L + + ++ + K G+D Sbjct: 292 ADIQGFGIQNENG-CYFIP-ADVALKSDAFKEWLANGEMRKHTFDAKRAIVALKW-KGVD 348 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 349 IQGIDF-DLLIAAYLLDP----ADTDKDFRAVAKMKETHAVKSDEEVYGKGAKRAVPEQE 403 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A HV K+ E E ++ ++ E L + + +G +D + + Sbjct: 404 VVAEHVARKVHVLYDVKQIFEEELEKNEQYELFTELELPLARVLADMEVKGVTVDTERLR 463 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 + E +A K+++++I +L + L + LF + ++ ++ T + Sbjct: 464 NMGEELAGRLKEMEQEIYELAGTEF-NINSPKQLGVILFENLNLPVLKKTKTGYSTSADV 522 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGC 323 L IL+ + L + V D ++ ++TGR S Sbjct: 523 LDKLMDHHAIIPKILHYRQLGKLNSTYIEGLLKVVHDDSSKIHTRFNQ-VLTQTGRLSST 581 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R I G + AD + Sbjct: 582 EPNLQNIP------------------------IRLEEGRKIRQAFIPSEEGWIMYAADYS 617 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA IA ++ ++AF + DI+ T F D+V+ R K + + Sbjct: 618 QIELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV-- 675 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN + A Sbjct: 676 ------------YGISDYGLSQN------------------------------LGITRKA 693 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + GV + D+ + S R +P + R Sbjct: 694 AGEFIERYLESFPGVQEYMADIVKDAKQKGYV--STLLNRRRYIPEITSRNFNL------ 745 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NAT 618 + + +NT +Q + DI+ + M Sbjct: 746 ---------RSFAERTAMNT------------------PIQGSAADIIKKAMIIMADRLE 778 Query: 619 KNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + L +M A +PLK + + Sbjct: 779 EEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 834 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 84/632 (13%), Positives = 175/632 (27%), Gaps = 129/632 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113 L L+ ++V N+ + + + LGI + + + + + + + Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENINF-DLLLASYLLNTNDNSNDLGQVA 423 Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + + GK P D T +H+ E ++D+ A + Sbjct: 424 QEHGYDDVRTDEEVYGKGAKR-------TVPDDDETFFSHLATKARAIEQLRKDLFAKLD 476 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+ +D E L + + G +D + + + + +++ I + Sbjct: 477 ENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEF 536 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L LF + ++ ++ T +L + IL + Sbjct: 537 -NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQS 595 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + S+ + T ++TGR S QN+P Sbjct: 596 TYIAGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP------------------ 637 Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G ++ +D + +E RVLA I G+ + F NGEDI Sbjct: 638 ------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDI 691 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + +T + F+ D + Sbjct: 692 HASTARRIFHLAPD-------------------------------------------AEI 708 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +A + + A + + + + + GV + D Sbjct: 709 DRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFA 768 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 RR D+ + + Sbjct: 769 KENGYVETITH--------------------------RRRYLPDIHAKSFSKRSFAERT- 801 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +Q + DI+ M ++L +HDE+V E P Sbjct: 802 --------AMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIP 853 Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PLK + + Sbjct: 854 VLSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 286 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84 + + + ++L D + + +F L Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138 G+ +P + + + + + + + GK + + Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + LF + ++ L +D E L + + +G Sbjct: 447 DKLFGQFARKSN------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ + + +Q K L+E I + L LF + ++ ++ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L+ IL+ + + L +A D ++ + Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 +TGR S QN+P ++ +R + G Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + Y + + + F+ + + + M + E Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + L R + +L + Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + +NT K+ +Q Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817 Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K + G ++L VHDE++ E P+ + L +M +PLK E + Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874 Query: 671 KRY 673 + Sbjct: 875 PTW 877 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84 + + + ++L D + + +F L Sbjct: 339 IGFFIGTKEETYVSTDVTLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138 G+ +P + + + + + + + GK + + Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + LF + ++ L +D E L + + +G Sbjct: 447 DKLFGQFARKSD------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ + + +Q K L+E I + L LF + ++ ++ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L+ IL+ + + L +A D ++ + Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 +TGR S QN+P ++ +R + G Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + Y + + + F+ + + + M + E Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + L R + +L + Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + +NT K+ +Q Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817 Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K + G ++L VHDE++ E P+ + L +M +PLK E + Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSAVH--LDVPLKVESHYG 874 Query: 671 KRY 673 + Sbjct: 875 PTW 877 >gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] Length = 896 Score = 286 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 184/661 (27%), Gaps = 137/661 (20%) Query: 30 ITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + + D + + D P L Q L D+ + N F+ + L Sbjct: 352 LEGFSLKVSD-KIYVSKDVVLLQEAP--LRQMLEDKKIKK---NV-FDIKRTYVGLHRLD 404 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 ID + + + ++ + + K + + KG + P Sbjct: 405 IDAEGLDY-DMLLASYLVNNENNSNDLGEVAHL----YDDYSVKTDLEVYGKGKKQAVPE 459 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 D H+ A E K+ + + ++ E + + + G +++ + Sbjct: 460 DDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASV 519 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + +L A + ++L+ I + + L LF + + ++ T Sbjct: 520 LNQLGNDFAVKLQELEHKIYQQAGEEF-NLNSPKQLGHILFEKLNLPPIKKTKTGYSTSV 578 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + IL+ + + L E + D R+ + TGR S Sbjct: 579 EVLEQLKMKSPIVSEILDYRQIAKIQNTYVKGLLECIQPDSRIHTRYLQT-LTATGRLSS 637 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVAD 380 QN+P +R + +G D Sbjct: 638 VDPNLQNIP------------------------TRTDEGKQIRKAFVPSTKDGYIF-SCD 672 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + +E RVLA ++G++ +AF +G DI+ T K F+ D+V+ R K + + Sbjct: 673 YSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGI 732 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + Sbjct: 733 VY-----GISDYGLSKNL---------------------------------------GIS 748 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + ++ + + + Sbjct: 749 RKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH-------------------- 788 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ + + R + +Q + DI+ M N K Sbjct: 789 ------RRRYLPDIHSKNFNVRSFA---ERTAI------NSPIQGSAADIIKIAMINMQK 833 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 +VL VHDE++ + P ++ + +M +PL A+ Sbjct: 834 KLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSAVK--LDVPLIADSNWGHN 891 Query: 673 Y 673 + Sbjct: 892 W 892 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 286 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84 + + + ++L D + + +F L Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138 G+ +P + + + + + + + GK + + Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + LF + ++ L +D E L + + +G Sbjct: 447 DKLFGQFARKSN------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ + + +Q K L+E I + L LF + ++ ++ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L+ IL+ + + L +A D ++ + Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 +TGR S QN+P ++ +R + G Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + Y + + + F+ + + + M + E Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + L R + +L + Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + +NT K+ +Q Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817 Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K + G ++L VHDE++ E P+ + L +M +PLK E + Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874 Query: 671 KRY 673 + Sbjct: 875 PTW 877 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 94/628 (14%), Positives = 173/628 (27%), Gaps = 146/628 (23%) Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDI--PSKRWICTSVLARTNGLPSSLKNACLAL 116 + L+ +TV V ++ L + K + + + Sbjct: 352 EILKSDTVKIV-----YDLKNIFHQLNLKDTDNIKNCEDVMIASYVLDSTRG------SY 400 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 R K + ++ L Sbjct: 401 ELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLID---------------LNSC 445 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + ER L + + G+++D D +L+ + I + KL+ I ++ G + Sbjct: 446 KFLYENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIA-GEWFNIN 504 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L LIL+ + Sbjct: 505 SPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQ 564 Query: 294 TLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L +A++ GR+ T G + TGR + QN+P Sbjct: 565 GLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP--------------------- 602 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T Sbjct: 603 ---VKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQT 659 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A+ F I V+ E R+ K + + G+ Sbjct: 660 AAEVFGVDIANVTPEMRSQAKAVNFGIV--------------YGISDY------------ 693 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 A K+ + ++ V + + + Sbjct: 694 ------------------GLARDVKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDNG 735 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 ++ +R+ D+K L R Sbjct: 736 --------------------------FVLTLFNRKRYVKDIKSTNRNLRGYA---ERIAM 766 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + +Q + DI+ M + I+L VHDE++ E P V Sbjct: 767 ------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820 Query: 647 LCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M A +PL E E + Sbjct: 821 IVKREMENAV--ALKVPLVVEVKEGLNW 846 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 105/690 (15%), Positives = 176/690 (25%), Gaps = 158/690 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------------AMPSDLLQYLRDET 65 QA ++ A A + L L Sbjct: 437 MQAELSGIALALAPNAACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGG 496 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA-LNFSEH 121 + V N F + GI + + +++ L+ L+ + Sbjct: 497 HLKVGFNVKF-TAVLLAQHGIVMQNN--DDVELISYALDAGRGAHDLEALAQRWLDHTAL 553 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 G A Y T L++ L P Sbjct: 554 NYGELIGSG---------------RNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRL 598 Query: 182 DGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ER + + RG ID ++ +L AQ +L+ +I KL Sbjct: 599 VAERMNSVYETLERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEP 658 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT-QLAKDLILNRLASSG 286 I + + +F G+ ++ T IL IL+ S Sbjct: 659 I-NVGSPKQIGEIMFGKMGLPGGSKTKTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSK 717 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E V+ T A+ TGR S QN+P Sbjct: 718 LKSTYTDALPEYVNPQTSRVHTTYALAATTTGRLSSNEPNLQNIP--------------- 762 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA+ G KLV AD + IE R+LA IA +AF +G Sbjct: 763 ---------VRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGL 813 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T ++ F P+ + E R K + + Y L + + Sbjct: 814 DIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYG-----ISAFGLANQLGIPREEAGT 868 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 FE + ++ +D E + L G C + + Sbjct: 869 YIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCH---------YPDIKSPNPSHRA 919 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 A++ R M R + S+R L Sbjct: 920 FNERAAINARLQGTA--ADIIRRAMVRMDDALAAKKLSARML------------------ 959 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YFSVG 645 ++ E PD ++ Sbjct: 960 ----------------------------LQVHDE-----------LIFEVPDDEVAATLP 980 Query: 646 TLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 + +M P+ +PL+ + A + Sbjct: 981 VVQHVMQDAPFPAMLLSVPLQVDARAADNW 1010 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 181/663 (27%), Gaps = 146/663 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--------KKTL 84 + + + ++L D + + +F L Sbjct: 339 IGFFIGTKEETYVSTDITLLTLPAVKRWLED---------AKRDLTVFDGKRNIVAANRL 389 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKG 138 G+ +P + + + + + + + GK + + Sbjct: 390 GVKLPDIAF-DVLLASYLINPDENSNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPED 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + LF + ++ L +D E L + + +G Sbjct: 447 DKLFGQFARKSN------ALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQG 498 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ + + +Q K L+E I + L LF + ++ ++ Sbjct: 499 ITLNAKTLKAMGTEFSQSIKILEEKIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTK 557 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L+ IL+ + + L +A D ++ + Sbjct: 558 TGYSTSVDVLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRYLQT-LT 616 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 +TGR S QN+P ++ +R + G Sbjct: 617 QTGRLSSVDPNMQNIPARD-------------------------EGKIIRKAFVPSHEGW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R K Sbjct: 652 QIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMRRQAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + Y + + + F+ + + + M + E Sbjct: 712 ATNFGIVYG-----ISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + L R + +L + Sbjct: 767 YVETLFHR---------RRYLPQIHSRNFNLRKFAER----------------------- 794 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + +NT K+ +Q Sbjct: 795 ------------------------TAMNTPIQG---SAADIIKVAMIRMQ---------- 817 Query: 614 MKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K + G ++L VHDE++ E P+ + L +M +PLK E + Sbjct: 818 -KALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSAVH--LDVPLKVESHYG 874 Query: 671 KRY 673 + Sbjct: 875 PTW 877 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 99/666 (14%), Positives = 181/666 (27%), Gaps = 128/666 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS-----AMP-----SDLLQYLRDETVMCVAHNSLF 75 A + A+A + +P L + + AH+ Sbjct: 338 RSAPLVGLAFA-GAGRAFYLPLGHRYLGAPAPLPAADVREGLRPLVE-AALPLHAHDLKS 395 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALI 132 + LG+ T +++R +L + ++ A Sbjct: 396 AAHALAR-LGLARSGPG-EDTELMSRLLLPTRREHALVDVAR----ERTSCELPRSPADG 449 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 A+ ++ + A + + EA E + + ER L + Sbjct: 450 AKRGAPGLEGLEVERVAAWAGACAAALPDLAAKLAEA-LETERLGALYREVERPLVPVLV 508 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G +D + + + + L+ I + T L LF+ + Sbjct: 509 EMERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHPF-NVASTRELAQVLFVELELP 567 Query: 253 LVD---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 +V T + +L L+L + S ++ L + V DGR+ T Sbjct: 568 VVKRLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTT 627 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 GA TGR S QN+P S +R Sbjct: 628 FHQAGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRQAF 662 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G +L+ AD + IE R+LA + + ++AF + ED++ T A+ F ++V+ +Q Sbjct: 663 VAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQ 722 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R I KV+ + Y LDL F + + W ++ Sbjct: 723 RRIAKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEE 777 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 L G A + L Sbjct: 778 ARAKGESRTLFGRA---------RAMPEIAARNPALRNAAERTAINTPIQGTAADVV--- 825 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ V + Sbjct: 826 ------------------KIAMIRVHAALAQERREAR----------------------- 844 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 ++L VHDE+V E P+ V L M +PL+ + Sbjct: 845 ---------------LLLQVHDELVLEVPERELEPVEALVRREMEGAAR--LKVPLEVQV 887 Query: 668 YEAKRY 673 + + Sbjct: 888 GHGQTW 893 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 84/632 (13%), Positives = 175/632 (27%), Gaps = 129/632 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113 L L+ ++V N+ + + + LGI + + + + + + + Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHR-LGIPLENINF-DLLLASYLLNTNDNSNDLGQVA 423 Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + + GK P D T +H+ E+ ++D A + Sbjct: 424 QEHGYDDVRTDEEVYGKGAKR-------AVPDDDETFFSHLATKARAIEHLRKDFFAKLD 476 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+ +D E L + + G +D + + + + +++ I + Sbjct: 477 ENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEF 536 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L LF + ++ ++ T +L + IL + Sbjct: 537 -NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQS 595 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + S+ + T ++TGR S QN+P Sbjct: 596 TYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP------------------ 637 Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G ++ +D + +E RVLA I G+ + F NGEDI Sbjct: 638 ------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDI 691 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + +T + F+ D + Sbjct: 692 HASTARRIFHLAPD-------------------------------------------AEI 708 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +A + + A + + + + + GV + D Sbjct: 709 DRNMRRRAKAVNFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFA 768 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 RR D+ + + Sbjct: 769 KENGYVETITH--------------------------RRRYLPDIHAKSFSKRSFAERT- 801 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +Q + DI+ M ++L +HDE+V E P Sbjct: 802 --------AMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIP 853 Query: 643 SVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PLK + + Sbjct: 854 ILSELVPKVMDSAVK--LDVPLKVDSKYGDTW 883 >gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] Length = 876 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 93/660 (14%), Positives = 189/660 (28%), Gaps = 134/660 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I D + V D L + + +N + + I + Sbjct: 346 IICMYITLDGDKVFCVS----EERIMDFKAVLESKDIKKYGYNMKEDYVALMPYE-IALK 400 Query: 90 SKRWICTSVLARTNGLPS-SLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + ++ S + L S + GK + A+ + Sbjct: 401 GMSF-DIAIAEYLIDSTSTNTSECGAIAMKYLMKSVKSKEELLGKGVKAKKFEDLTKEEL 459 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + + K E ++L D E L + + G ++D + Sbjct: 460 SGYISS---ILNTVVNAMPKMKEEIESTKIEKLFD--DVEMPLVEVLGNMEYTGIKVDKE 514 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 ++ +L + + L+E+I + L + LF + ++ ++ T Sbjct: 515 MLDELGKEFTKIISSLEEEIYGYAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYSTN 573 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L D I + L+ ++ DGR+ T + TGR Sbjct: 574 AEVLEKLKDKHPIIDKIGEYRQIVKLNSTYVEGLTALINPIDGRIHSTFNQT-ITTTGRI 632 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R+ ++ + K+LV AD Sbjct: 633 SSTEPNLQNIP------------------------VRMEIGRRLRAVFVSDDEKRLVDAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E RVLA ++G+ I AF +GEDI+ T ++ FN P+++V+ E R+ K + + Sbjct: 669 YSQVELRVLAHMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGII 728 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + + Sbjct: 729 --------------------------------------------YGKTDFGLSEDLNIPV 744 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + +++ AK++ + + ++ E + Sbjct: 745 PQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFN--------------------- 783 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617 RR ++K + +Q + DI+ M N Sbjct: 784 -----RRRYIPEIKSKNFMERNRGKRA---------AMNAPIQGSAADIIKIAMVNVFRR 829 Query: 618 ---TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + ++L VHDE++ ETP V + M + L + + Sbjct: 830 LEKEELRSKLILQVHDELIVETPIDELEKVEKIVREEMENAVD--MKVALTVDLNTGVSW 887 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 173/640 (27%), Gaps = 141/640 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKDGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V L M +PL + + + K Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 93/630 (14%), Positives = 177/630 (28%), Gaps = 146/630 (23%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACL 114 + + L+ +TV V ++ L ++ K + + S Sbjct: 350 IEEILKSDTVKIV-----YDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRS------ 398 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + R K + ++ L Sbjct: 399 SYELETLFVSYLNTEIEAVRKDKKIVSVVLLKRLWDELLRLID---------------LN 443 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + ER L + + G+++D D +++ + I + KL+ I ++ G + Sbjct: 444 SCQFLYENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIA-GEWFN 502 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF + ++ ++ T +L LIL+ + Sbjct: 503 INSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTY 562 Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L +A++ GR+ T G + TGR + QN+P Sbjct: 563 CQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP------------------- 602 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ Sbjct: 603 -----VKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHS 657 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T A+ F I V+ E R+ K + + G+ Sbjct: 658 QTAAEVFGVDIADVTPEMRSQAKAVNFGIV--------------YGISDY---------- 693 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A K+ + ++ V + + + Sbjct: 694 --------------------GLARDIKISRKEAAEFINRYFERYPKVKEYIDNTVKFARD 733 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 ++ +R+ D+K L R Sbjct: 734 NG--------------------------FVLTLFNRKRYIKDIKSTNRNLRGYA---ERI 764 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 + +Q + DI+ M + I+L VHDE++ E P V Sbjct: 765 AM------NSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIV 818 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M + +PL E E + Sbjct: 819 KEIVKREMENAVT--LKVPLVVEVKEGLNW 846 >gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032] gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032] Length = 879 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 195/658 (29%), Gaps = 133/658 (20%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L +A +E + E + ++++DET +S + + D+ K Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVALRWH---DVDLK 391 Query: 92 RWI-CTSVLARTNGLPSSLKNAC---LALNFS-EHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + ++ + + GK + + Sbjct: 392 GVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDEKVYGKGAKQAIP-PEDELKEHL 450 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +A + A + EL++ L E L L+ + G ++D+ + Sbjct: 451 GRKAAAISALHDLTLEALEKND-QHELYEDL------ELPLALILGEMESLGVKVDIKRL 503 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E + ++ K+ +E I +L G + L + LF G+ ++ ++ T Sbjct: 504 ENMGEELTKKLKEYEETIHRLA-GETFNINSPKQLGVILFEKLGLPIIKKTKTGYSTSAD 562 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL+ + L + D T ++TGR S Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLSST 622 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R + G + AD + Sbjct: 623 DPNLQNIP------------------------IRLEEGRKIRQAFVPSKEGWLMFAADYS 658 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ ++ I+AF DI+ T F+ ++V+ R K + + Sbjct: 659 QIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIV-- 716 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN+ + Sbjct: 717 ------------YGISDYGLSQNL------------------------------GITRKE 734 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + +GV +++ + + +R +P + R Sbjct: 735 AAAFIERYLTSFKGVKTYMEEIVQEAKQKGYV--TTLLKRRRYIPDITSRNFN------- 785 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 + + +NT +Q + DI+ + M + Sbjct: 786 --------IKSFAERTAMNT------------------PIQGSAADIIKKAMIDMARRLK 819 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K +++L VHDE++ E P + + +M +PLK + + Sbjct: 820 EEKLQTNLLLQVHDELIFEAPKEEIAILEKIVPEVMENALQ--LDVPLKVDFASGPSW 875 >gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] Length = 876 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 94/684 (13%), Positives = 188/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F +D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEVDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 90/640 (14%), Positives = 174/640 (27%), Gaps = 141/640 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ +++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR + IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPEANSSNK-------IVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V L M +PL + + + K Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/681 (14%), Positives = 192/681 (28%), Gaps = 140/681 (20%) Query: 10 TRS-PQPLPKVGVWAYAEQAVI-TLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDET 65 T S L V+A E + A D + ++ + + + + + Sbjct: 304 TTSVLADLDTAAVFAVLENDTLYMGVA---DGSNCYFIAANLAQEYDIIA-VKNFFEAKN 359 Query: 66 VMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + HNS + R + + I+I T++ + L A + Sbjct: 360 ISKILHNSK-DLRHILYRYQ-INIHG-NIFDTAIASYLINPLQSDYELSVAATGYDIKHV 416 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + GK I S RA+ + Q D L Sbjct: 417 DQLLGTGKNKITWASLASXIIVAQLGARASAMWTLQTAQLKELTDA-------SMLDLFY 469 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D + + + L++DI L D + + L Sbjct: 470 DIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLADEKF-NISSSKQL 528 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF GI ++ T +IL + +L + L + Sbjct: 529 GLILFDKLGIPAGKKTKTGYSTAANILDKLKDKYVIVAKVLEYRQYKKLHSTYVVGLLKL 588 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + + +L T + TGR S QN+P Sbjct: 589 LDKNNKLHSTFNQTV-TATGRISSAEPNLQNIP------------------------IRL 623 Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I S + + AD + IE RVLA ++ + +AF G DI+ +T ++ F Sbjct: 624 ALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGIDIHTSTASEVF 683 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 D V++ QR K + + G+ Sbjct: 684 GV--DTVTQAQRNAAKAVNFGVV--------------YGIS------------------- 708 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 A ++ + + AK+ V L Sbjct: 709 -----------AFSLADDIQVSNQEATEYIENYFAKYPNVKHYLDSL------------- 744 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + + + V +R+ ++ ++ Sbjct: 745 -------------ITTSQATGYGVTLLNRKRNIVELFSSNFNTKEYGKRI---------A 782 Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 +Q + DI+ + M ++LTVHDE++ E + + L M Sbjct: 783 MNMPIQGTAADIIKKAMIQVHNALKGTRSTLILTVHDELLLEVHKSEIEHITKLLKTEME 842 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 A +PL + + Sbjct: 843 SAVKLA--VPLLVDVKSGXSW 861 >gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi] gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi] Length = 1085 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 87/733 (11%), Positives = 181/733 (24%), Gaps = 207/733 (28%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS--------------AMPSDLL-QYLRDETVMCVA 70 V+ ++ + + S + + + + ++ + Sbjct: 471 HNPVMAGISFCISPGQAYYLPFFKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIG 530 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL-ALNFSE----HL 122 HN + + + K + V++ + L Sbjct: 531 HNIKYHIKMLANY---GVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIP 587 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K G + + + + T++ + L D Sbjct: 588 EKEVLGIGKKKVTLMEADIVS---------------VVHFACQHADLTKQAYDVLKSALD 632 Query: 183 G-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226 E+ L I +G +D ++K++ ++ K + I + Sbjct: 633 KSPKLTQFYEGIEKPLVETLAGIEMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYP 692 Query: 227 --------------------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 + L +F GI + + T Sbjct: 693 TIDEDIEIPTSEEEIESMIIEMDEMKQEASEEFNINSNRQLGQVIFEKLGI-GTKLRKKT 751 Query: 261 --------LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + + + IL A + ++ L + ++ + T Sbjct: 752 KVGDYILNAEVLQKLAAEGHSIAKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQN 811 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-AS 371 + TGR S + QN+P +R C I S Sbjct: 812 ALTVTGRLSSVMPNIQNIP------------------------VRTAEGKQIRRCFISPS 847 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + ++ D + +E R+LA IA AF +D++ T ++ FN P+D+V K R Sbjct: 848 DDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPLDQVDKSTRNK 907 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y + + + Sbjct: 908 AKAINFGIIYGMS-----EFGLSKRIGVDTQA---------------------------- 934 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + + ++ G+ E + R Sbjct: 935 -----------AKSFIEQYFKQYPGIKNYMTKTIEFCRKHGYVNTLFNRRCWI------- 976 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 + +S R +Q S DI Sbjct: 977 ---------------------PGIEDQGFGGKSSFGERTSI------NTPIQGTSADITK 1009 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKG---- 660 M + K +++ VHDEIV E P +V + LM ++ G Sbjct: 1010 IAMNSLHKAFQEKGLRTRMIIQVHDEIVFEVPKDEVETVEPIIKELMEGA-AFFGGTNFT 1068 Query: 661 LPLKAEGYEAKRY 673 +PL E ++ Sbjct: 1069 VPLTVEATVDSKW 1081 >gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 94/684 (13%), Positives = 186/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + A + ++ + + +L+ Sbjct: 302 IET-SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADDINNYVELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + L IDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLEIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGYVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 173/640 (27%), Gaps = 141/640 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKAVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V L M +PL + + + K Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 100/655 (15%), Positives = 184/655 (28%), Gaps = 139/655 (21%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 T A+ LL L D + + V H+ +F+ + Sbjct: 347 GRYYYVPET---ALVEALLGALNDLPNADALGIVGHDLKALTHIFEAQGAQLVKMD--FD 401 Query: 96 TSVLARTN---GLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T V A LK+ L+ + + GK R Sbjct: 402 TYVAAYLLEPADNRYDLKSLAAKYLDQTIVGEEELLGKGRTRRALAEIAAPERAAFIVGE 461 Query: 152 HVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 L E + E L++++ E L + ++ G++ID + + L Sbjct: 462 CAAIHGLHAELAHQLEEMEMTALYQKI------ELPLIPVLASMESIGFKIDQEQLKNLS 515 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 + L I + G + T L M LF G+ + ++ T +L Sbjct: 516 AHFEARIETLTRQIYEEA-GQRFNINSTKQLGMILFEEMGLPPIKKTKTGYSTSVEVLEQ 574 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 D IL + L + V ++ + TGR S Sbjct: 575 LRPYNTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFNQTV-TATGRISSSDPN 633 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P +R + S LV AD + IE Sbjct: 634 LQNIP------------------------VRTDLGREIRRVFVPSSPMCVLVDADYSQIE 669 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA + ++ ++AFA +DI+ T ++ F P++ V++EQR+ Sbjct: 670 LRVLAHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHA------------- 716 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 +A + L Q + + + Sbjct: 717 -------------------------------KAINFGLIYGKQAFSLGKELGIGRNQAQD 745 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + +++ V K + E Sbjct: 746 YIDMYFSRYPKVYAYMKAIREEAKTKGYVTTLY--------------------------G 779 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-- 623 RR +++ + + ++ +Q + DI+ M Sbjct: 780 RRRYIPEIQSRNRMIVQSGERM---------ALNTPIQGSAADIMKIAMVKVYHRLAKES 830 Query: 624 ----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L +HDE++ E P+T + L M S +PL + K + Sbjct: 831 FRSHLLLQIHDELIIEAPETESEKILRLLTEEMENAVS--LSVPLVVDARIGKSW 883 >gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] Length = 895 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 89/631 (14%), Positives = 185/631 (29%), Gaps = 126/631 (19%) Query: 56 DLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 +L + + ++ N F + K LG+ + + + A + L Sbjct: 374 ELRSVIENAAIIKNVFNVKAQF---VLFKRLGMTLRGVEF-DFLLAAYLLDTTDNDNELS 429 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 +F + GK + + + +A+ + + +D E T Sbjct: 430 TLAQRFDFYVTPDEDIYGKGAKYAVPEETSRVLVHLAHKADVLMQLEQPAFAALQDHEQT 489 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E L + + RG +ID + ++ + + + ++ + + G Sbjct: 490 HL-------YTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTI-KEAIFIEAG 541 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L + LF G+ ++ ++ T +L D IL + Sbjct: 542 EVFNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVDHILQYRQLAKL 601 Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L V D ++ ++TGR S QN+P Sbjct: 602 KSTYVDGLLSVVHEKDSKIHTRFLQT-LTQTGRLSSIDPNLQNIP--------------- 645 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 A +R+ + S ++ AD + IE RVLA + G+ +AF NG Sbjct: 646 ---------MRTEAGRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLNG 696 Query: 406 EDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T F + V R K + + Y L + + Sbjct: 697 EDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYG-----ISDFGLANNLGISRAEA 751 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + F+++ + ++ + E + + R + +L Sbjct: 752 KRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKR---------RRYLPEIGSKNFNL 802 Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + SA + + + + Sbjct: 803 RSFAERTAMNSPIQGSAADIIKIAMIKV-------------------------------- 830 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 L EN +QA ++L VHDE++ E P Sbjct: 831 ----------ADALQENGMQA------------------RMLLQVHDELIFEAPSDEIAE 862 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +P+ E + + Sbjct: 863 LSELVTRVMDSAV--VLDVPMLVESHSGNTW 891 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 179/663 (26%), Gaps = 130/663 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLFERIL 79 + A+A + + L + + AH Sbjct: 342 LVGLAFA-GAGRAFYLPLGHRYLGAPAPLAPADVREGLRPLVE-AALPLHAHELKAAAHA 399 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LG+ T +++R +L + ++ A A+ Sbjct: 400 LAR-LGLARSGPG-EDTELMSRLLLPTRREHALVDVAR----ERTSCELPRNPADGAKRG 453 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTIN 195 ++ + A + + E E L + ER L + + Sbjct: 454 APGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYR--EVERPLVPVLVEME 511 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G +D + + + + L+ I + T L LF+ + +V Sbjct: 512 RTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF-NVASTRELAQVLFVELELPVVK 570 Query: 256 ---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311 T + +L L+L + S ++ L + V DGR+ T Sbjct: 571 RLKTGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQ 630 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA TGR S QN+P S +R +A Sbjct: 631 AGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRQAFVAP 665 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G +L+ AD + IE R+LA + + ++AF + ED++ T A+ F P ++V+ +QR I Sbjct: 666 AGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQRRI 725 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 KV+ + Y LDL F + + W ++ Sbjct: 726 AKVLNFGIAYG-----LSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRRYIEWAVEEARA 780 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 L G A + L Sbjct: 781 KGESRTLFGRA---------RTMPEIGARNPALRNAAERTAINTPIQGTAADIV------ 825 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 ++ V + A Sbjct: 826 ---------------KIAMIRVHDALAQERRAAR-------------------------- 844 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670 ++L VHDE+V E P+ V L M +PL+ + Sbjct: 845 ------------LLLQVHDELVLEVPERELAPVEALVRREMEGAAR--LKVPLEVQVGHG 890 Query: 671 KRY 673 + + Sbjct: 891 QTW 893 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 172/640 (26%), Gaps = 141/640 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E + ++ KK LGID + C + A Sbjct: 355 LVKEEENIKAFKEFFENEDTLKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V L M +PL + + + K Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDWYK 864 >gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH60] Length = 876 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 94/684 (13%), Positives = 187/684 (27%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + +Q M+E Sbjct: 791 AMNTPIQGSAADIIKLAMVKF---------------------------------AQKMKE 817 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 TY KL L VHDE++ E P + S + Sbjct: 818 TTYQAKLL---------------------------LQVHDELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 90/638 (14%), Positives = 172/638 (26%), Gaps = 141/638 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEENIKSFKEFFENEAILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGITFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKAVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L M +PL + + + Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 91/665 (13%), Positives = 179/665 (26%), Gaps = 135/665 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL 84 + A + ++ D T L D + H+ F I++ Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNF--IVYLNNR 398 Query: 85 GIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSI 140 GID + T + A ++ LN S + GK K Sbjct: 399 GIDFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQ 457 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTI 194 G Y + +R++ L D E L + Sbjct: 458 PDVLSK-----------TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADM 506 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G+++++D +++ + + ++ + ++I L + L + LF G+ ++ Sbjct: 507 EYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPII 565 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 ++ T +L + + IL L ++ G++ + Sbjct: 566 KKTKTGYSTDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN 625 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R I Sbjct: 626 QTV-TATGRISSTEPNLQNIP------------------------IKLEMGRKIRKVFIP 660 Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 L+ AD + IE RVLA I ++ I AF N EDI+ +T A F P ++V+ R Sbjct: 661 SDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMR 720 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K + + Y G + L + + + + + + + ++ Sbjct: 721 SRAKAVNFGIVYGIG-----DFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEG 775 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 E + R + ++ V + Sbjct: 776 KEKGFVTTMFMR---------RRYLPELKSRNFNIRSFGERVAMNTPIQGSAADII---- 822 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 ++ V G+ KL ++ Sbjct: 823 -----------------KIAMVKVHGELKKR---------------KLKSRLI------- 843 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 ++ ET V + M S +PL E Sbjct: 844 -----LQVHDE-----------LIVETFKDEKEEVEKILLEGMQNAVS--LKVPLVVEIK 885 Query: 669 EAKRY 673 + Sbjct: 886 SGSNW 890 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 102/682 (14%), Positives = 201/682 (29%), Gaps = 150/682 (21%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----RDETVMCVAHNS 73 K+ V+AY E + + AY V E+ AM S L +++ V H+ Sbjct: 324 KLTVYAYREDDRVWVAAY---IGGVYY--FVEKPAMVSAFFSGLGEIPEADSLQTVGHDL 378 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGK 129 + + T + A L+ L + + G+ Sbjct: 379 KNLTHI--YHSQCSVIVNYTFDTYIGAYLLNPSDQRYDLQTVAMKYLGDTIQSEEDFFGR 436 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDG 183 + + + C+ + L +++ + Sbjct: 437 GK-----------TLVRAEDMDSARLAAFMVKNCEVIHRLEKPLAEKIEADGMTGLFQNI 485 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + ++ + G+++D+ + +L ++ + L +I +L + + T L Sbjct: 486 ELPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQLGT 545 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF + +V ++ T +L + I++ S L + V Sbjct: 546 ILFDKLKLPVVKKTKTGYSTNAEVLDQLVLFHPIIQKIIDYRMISKLDSTYGKGLIKLVD 605 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ T + TGR S QN+P Sbjct: 606 PKTHKIYSTFNQTV-TATGRLSSSDPNLQNIP------------------------VKTE 640 Query: 360 ASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G + LV AD + IE RVLA ++G++ I F +DI+ T ++ FN Sbjct: 641 MGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFN 700 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P+D VS+EQR+ K + L Sbjct: 701 VPMDAVSREQRSHAKAINFGLI-------------------------------------- 722 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 Q + + + +++ VL+ +++ Sbjct: 723 ------YGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKVLEYMENIKAEAKEKGYVTTIW 776 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 RR +++ L A ++ Sbjct: 777 --------------------------GRRRYITEINSRNRMLVQAGERM---------AL 801 Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + DI+ M ++L VHDE++ +T T +V L M Sbjct: 802 NTPIQGAAADIIKIAMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQETVMKLLVEEM 861 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 +PL + + + Sbjct: 862 ENAVD--LKVPLTVDAHAGDSW 881 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 89/639 (13%), Positives = 178/639 (27%), Gaps = 146/639 (22%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIP-SKRWICTSVLARTNGL 105 + L E V V+H + + L +D+ +K + A Sbjct: 373 ENKDKTIEILKTIFEKEAVRVVSH----DVKVLSMALKKLDVEFTKALFDLKIAAYLIDS 428 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 S + LI + R + + Sbjct: 429 SKS----------------DYDLSTLIQECLSKIVKDDEEREIRETSLLEKLCANLKEQI 472 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L+ + E L + + G+++D +++ + + + +E +K+ ++I Sbjct: 473 INLEMEKLYY------EVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIY 526 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 +L D + L LF + ++ ++ T +L I Sbjct: 527 ELADEEF-NVNSPKQLGKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYR 585 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L + DGR+ + + TGR S QN+P Sbjct: 586 QLTKLYSTYVEGLKNVIDEDGRIHSSFNQTV-TTTGRLSSTEPNLQNIP----------- 633 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR + + ++ AD + IE RVLA IA ++ I A Sbjct: 634 -------------IKYEMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINA 680 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F + DI+ T ++ F PID+V+ R K + + Y G Sbjct: 681 FKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIGDFSL------------- 727 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A K+ + + ++ V + Sbjct: 728 -------------------------------AKDLKISRKEAKGYIDTYFERYPNVKKYM 756 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + + ++ RR + G+ +N Sbjct: 757 DETIDKAKRDMYVTTILNRRRFIPEI-----------------GNKNKIVKALGERLAMN 799 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSE 635 T +Q + DI+ M I+L VHDE++ Sbjct: 800 T------------------PIQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDELILN 841 Query: 636 TPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + ++ M +PL+ + E + + Sbjct: 842 VYKDELEEIKSIVKDSMENVLP--LSVPLEVDINEGENW 878 >gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] Length = 885 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 153/665 (23%) Query: 28 AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81 A + D V + + L L D+ V N F+ + Sbjct: 339 ADFVGFSLKMGDN-VYVSNDVSLLTKQP----LQTLLEDQAVNK---NV-FDLKRTIVGL 389 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135 LGI + + + + ++ + + + GK A Sbjct: 390 HRLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDV--DIYGKGKKA-- 444 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 D + A V A + T L E + + + Sbjct: 445 --AIPDEEIFFNHLAGKVLAIEALKP--TLLKRLTEHEQDDLYETI--EMPVANVLAKME 498 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G + D +++L Q +L+ DI L G + L LF + + Sbjct: 499 ITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPIK 557 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T +L +L+ + + L + + DGR+ Q Sbjct: 558 KTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYQQT 617 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370 + TGR S QN+P +R I Sbjct: 618 -LTATGRLSSVDPNLQNIP------------------------VRLEEGKKIRKAFIPSN 652 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 +G D + +E RVLA ++G++ +AF G DI+ T K F+ D+V+ R Sbjct: 653 KDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTPNMR 711 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + G+ S+N Sbjct: 712 RHAKAVNFGIV--------------YGISDYGLSKN------------------------ 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + ++ + + Sbjct: 734 ------LGISRKQAKEFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMH---------- 777 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + + R + +Q + DI Sbjct: 778 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGGAADI 812 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M N K +++ VHDE++ + P ++ + +M +P Sbjct: 813 IKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--LDVP 870 Query: 663 LKAEG 667 L A+ Sbjct: 871 LVADS 875 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 92/669 (13%), Positives = 175/669 (26%), Gaps = 157/669 (23%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLRDETVMCVAHNSLFERILF 80 +A+QA + + E + + L + H Sbjct: 337 FADQAGLGGIGLCFSKEESYCIKVEKDITGEWLLKKLADVAEKAETYAMFH--------L 388 Query: 81 KKTL-GIDI-PSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIAR 134 K+++ + I SV A + ++ L ++ KA Sbjct: 389 KESMEQVTIRNQANCFDVSVAAYLLNPLKNNYTWEDVAREHLGLMIDEKIDQDMKACYES 448 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + + R + D E L + Sbjct: 449 YVNYASVEVLRQKLRDTKMDTL-----------------------FRDIEMPLVFTLFDM 485 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G R++ D + + + +A + +L+++I + G + L + LF + Sbjct: 486 EQNGIRVEADALKQYGDQLAGKIAELEKEIYEEA-GETFNINSPKQLGVVLFENMKLPGG 544 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T +L IL + + L+ + DGR+ G Sbjct: 545 RKTKTGYSTAADVLEKLAPEHPVVAKILEYRQYTKLKSTYADGLANYIQDDGRIHGKFNQ 604 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P +R I Sbjct: 605 T-ITATGRISSTEPNLQNIP------------------------VRMELGRLIRKVFIPE 639 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + V AD + IE RVLA +G++ I+A+ DI+ T ++ F+ P D+V+ +QR Sbjct: 640 EGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVTPQQRRN 699 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y + L Sbjct: 700 AKAVNFGIVYG-----ISSFGLSQDLS--------------------------------- 721 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + A + G+ RR Sbjct: 722 ------ITRKEAAKYIDDYFATYPGIKTFLDHAVTHAKEEGYVVTLFGRRRPVPELSSSN 775 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 G+ + + +Q + DI+ Sbjct: 776 FMQ-----------------RSFGERVAM------------------NSPIQGAAADIIK 800 Query: 612 EGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664 M K +VL VHDE++ E + V + M +PL+ Sbjct: 801 IAMIRVNQRLKDQKMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAAE--LKVPLE 858 Query: 665 AEGYEAKRY 673 + + + Sbjct: 859 IDMHTGDNW 867 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 90/638 (14%), Positives = 172/638 (26%), Gaps = 141/638 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEENIKAFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYNLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ D++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L M +PL + + + Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 90/538 (16%), Positives = 155/538 (28%), Gaps = 116/538 (21%) Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGER----------DLWLLDQTINDRGYRIDL 203 A Y D + T L++ + P ER L + + G RID Sbjct: 42 VAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVPVLARMERAGIRIDR 101 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---- 259 +++ +L +Q +L+E+I + + + LF G+ + Sbjct: 102 NMLSRLSGDFSQILARLEEEIQEDAGEKFQ-VSSPKQIGDVLFGKLGLPGAKKTPSGQWA 160 Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T ++L ILN + ++L E + T A+ TG Sbjct: 161 TPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNRVHTSFSLAATTTG 220 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R +A GKKL+ Sbjct: 221 RLSSSEPNLQNIP------------------------IRTEEGRRIRRAFVAPEGKKLIS 256 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA IA +AF G DI+ T + F P+D+++ + R K + Sbjct: 257 ADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFG 316 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + + + E L Sbjct: 317 IIYG-----ISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTL 371 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G C + + Sbjct: 372 FGRVCH---------YPQIRSNNPSERASVERQAINAPIQGTA----------------- 405 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + + L +R +R Sbjct: 406 --------------ADIIRRAMTRMEAALEAKRL------------TAR----------- 428 Query: 619 KNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 ++L VHDE+V E PD ++ + +M + P+ A +PL E A + Sbjct: 429 -----MLLQVHDELVFEVPDDEVEATIPVIAEVMEQAPAPALTLSVPLVVEARAAGNW 481 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 283 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 97/676 (14%), Positives = 185/676 (27%), Gaps = 146/676 (21%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM---CVAHNSL-- 74 G+ E ++ A A +D V + L + D + N Sbjct: 324 GLKLLYEDGCVSGAALAHEDNSVCYIPV-QGFVTEDYLKAKITDMAAVCDCIAGLNIKSV 382 Query: 75 ---FERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEE 127 +R + + I + A S LN Sbjct: 383 LPAIDRQV----------YPKLIDAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNELT 432 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 G + + R ++A+ + + V+ K L D E L Sbjct: 433 G----RMSYAEASMVKSEELARLACMEAYCVRHAWNVISVKLDEVQMKHLFD--DIEMPL 486 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G +D + + + +A +L+ I +L + L LF Sbjct: 487 VFVLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELAGTKF-NINSPKQLGTVLFE 545 Query: 248 ITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + ++ T +L IL + + L+ + DGR Sbjct: 546 DMKLPSGKKTKSGYSTAADVLEKLAPEYPVVAKILEYRQLTKLKSTYADGLAVYILEDGR 605 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + G + TGR S QN+P + Sbjct: 606 IHGHFNQT-ITATGRISSTEPNLQNIP------------------------VRMEIGRQI 640 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R + G + AD + IE R+LA ++ +D I A+ +DI+ T ++ F+ P+D+V Sbjct: 641 RKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQVFHVPLDEV 700 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 ++ QR+ K + + Y + L Sbjct: 701 TRTQRSNAKAVNFGIIYG-----ISSFGLSQDLS-------------------------- 729 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + A + + + L Sbjct: 730 -------------ISRKEASEYIEQYFATYPHIKEFIDGLVASAKKNGYSTTMF------ 770 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 RR ++ R + +Q Sbjct: 771 --------------------GRRRPVPELNSSNFMQRQFG---ERIAM------NSPIQG 801 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSW 657 + DI+ M N ++ ++L VHDE++ ET + +V + MT S Sbjct: 802 SAADIIKIAMINVSRALKDNNLKSKMILQVHDELLIETYEDEVDAVRQILIDNMTNAAS- 860 Query: 658 AKGLPLKAEGYEAKRY 673 +PL+ + E + Sbjct: 861 -LRVPLEVDVKEGHDW 875 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 89/638 (13%), Positives = 172/638 (26%), Gaps = 141/638 (22%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ ++ +E ++ ++ KK LGID + C + A Sbjct: 355 LVKEEENIKSFKEFFENEDILKNGYSIKNALTALKK-LGIDFNGLAFDC-ELAAYLIDSS 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S K + K + Sbjct: 413 KG-----EYTLLSLIN----------NYLSKFPNVKEGEEDLVGISFMKELTLVLKKKIE 457 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E L + D E L + ++ G++++ +++ +L +E ++ ++I + Sbjct: 458 EEKMERL------MYDIELPLETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFE 511 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L D + L LF + ++ ++ T +L + I Sbjct: 512 LADEEF-NINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQ 570 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L + +DG + T + TGR S QN+P Sbjct: 571 LSKIYSTYVEGLKSVIDTDGSIHSTFNQTV-TTTGRLSSTEPNLQNIP------------ 617 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G L+ AD + IE RVLA I+G++ I AF Sbjct: 618 ------------IKYEMGREIRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ T ++ F P+++V+ R+ K + + Y G Sbjct: 666 NHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLS------------- 712 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + ++ + + Sbjct: 713 -------------------------------QDLNISRKEAKEYMDIYFERYPKIKEYIS 741 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ RR IV RL Sbjct: 742 KVIHEAQTKGYVLTMLNRRRYIPE-------ANASNKIVKALGERLAM------------ 782 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +Q + DI+ M N ++L VHDE++ Sbjct: 783 ----------------NAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINV 826 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L M +PL + + + Sbjct: 827 VKGELDIVKKLLKEEMENTIK--LSVPLDVDVNVGEDW 862 >gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12] gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12] gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] Length = 881 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 83/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 106/665 (15%), Positives = 203/665 (30%), Gaps = 136/665 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + A A D D T + L +L D V H + + G Sbjct: 358 GDVQALAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHAL-RGRGW 416 Query: 87 DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + T++ A +L + L E + ++ L + ++D+ Sbjct: 417 TL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAE 475 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 ++A + D E + L L+D E L + T+ + G +D Sbjct: 476 TARAEM---LRARAVLDLAAALDAELEQIESTAL--LTDMELPLLGVLATLEEAGIAVDC 530 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---- 259 + + LQ A + + + G + L++ LF + ++ Sbjct: 531 EQLEALQRQFADKVAQA-AEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTT 589 Query: 260 ---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 L+S+ + L +L ++ + ++ L ++V+ DGR+ T A Sbjct: 590 DADALESLFEKTQHPFLEH--LLAHRDATRLKVT-VDGLLKSVADDGRIHTTFNQTIA-A 645 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P +R + G + Sbjct: 646 TGRLSSTEPNLQNIP------------------------IRTDTGRMIRDTFVVGPGYAE 681 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G++ I+AF +GED++ +KAF+ PI +VS E R K M Sbjct: 682 LMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAM 741 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y + L Sbjct: 742 SYGLAYG-----LSSYGLSAQL-------------------------------------- 758 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ + + ++ + ++ E V Sbjct: 759 -KISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLF----------------- 800 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ A ++ +Q + DI+ M Sbjct: 801 ---------GRRRYLPDLDSSNRQRREAAERM---------ALNAPIQGTAADIIKVAMI 842 Query: 616 NATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + + ++L +HDE+V E + ++ L M+ A +PL Sbjct: 843 DVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAI--ALSVPLDVSVG 900 Query: 669 EAKRY 673 + + Sbjct: 901 TGRSW 905 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 99/665 (14%), Positives = 180/665 (27%), Gaps = 153/665 (23%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----- 82 A A E D P L + L D V N F+ K+ Sbjct: 338 ADFAGFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-FD---LKRTTYGL 388 Query: 83 -TLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135 LGI + + + + + + L GK A+ Sbjct: 389 YRLGIKAEGLSF-DLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDL--EVYGKGKNAKI 445 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + + + A + +D E L E + + Sbjct: 446 PADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKME 498 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ++ + +L+ A K+L+E I K + L + LF G+ ++ Sbjct: 499 MNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIK 557 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311 ++ T +L+ IL S + L + + DGR+ Sbjct: 558 KTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQ 617 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370 + TGR S QN+P +R + Sbjct: 618 T-LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPS 652 Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 +G + D + IE RVLA ++ + +AF G DI+ T K F+ +D+V+ Q Sbjct: 653 SPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQ 711 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y LD Sbjct: 712 RRRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------ 736 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + ++ G+ + + Sbjct: 737 ---------ISRKQAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMH--------- 778 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR D+ + + R + +Q + D Sbjct: 779 -----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAAD 812 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 I+ M N K +V+ VHDE++ + P ++ + S+M + Sbjct: 813 IMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDV 870 Query: 662 PLKAE 666 PL A+ Sbjct: 871 PLVAD 875 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 81/597 (13%), Positives = 154/597 (25%), Gaps = 127/597 (21%) Query: 91 KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 K ++ A + L K K + Sbjct: 393 KSIFDAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRKSIFEEGKLLPEGEQI 452 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +V + K L++ + E + + RG +D + Sbjct: 453 IGYEAYVACACIEPLRKKLTETGMLSLYE------EIEIPTMVALHDMEVRGIHVDRKAL 506 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + + ++L E I K + L + LF ++ ++ T Sbjct: 507 KEYGDQLIGRIEELRELIYKEAGEEF-NINSPKQLGVVLFEHMKLEGGKKTKTGYSTSVD 565 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + L+ + D R+ G + TGR S Sbjct: 566 VLEKIEHLYPIISYILEYRQLTKLKSTYADGLANYIGDDERIHGKFNQT-ITATGRISST 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + G V AD + Sbjct: 625 EPNLQNIP------------------------ARVELGRAIRKVFLPEEGYTFVDADYSQ 660 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++G+ I A+ +DI+ T ++ F PID+VS QR K + + Y Sbjct: 661 IELRVLAHLSGDKNLIHAYEMEQDIHARTASEVFGVPIDQVSSIQRRDAKAVNFGIVYG- 719 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + FE + + + + ++ E + Sbjct: 720 ----LSAFGLSQDLKITRKQAQEYIDKYFETYPKVKEYLNREVEKGKEEGFVTTMFQRIR 775 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + Sbjct: 776 PI---------PELKSSNFMQRN------------------------------------- 789 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618 G+ +N+ + DI+ M Sbjct: 790 ----------FGERVAMNSPIQG------------------SAADIIKIAMIRVNMELKK 821 Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L +HDE++ E D+ V + M +PL + + + Sbjct: 822 RKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK--LSVPLSIDIHTGNSW 876 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 95/660 (14%), Positives = 189/660 (28%), Gaps = 136/660 (20%) Query: 31 TLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 A + + V D + +DL +L+DET +S + + + LGI++ Sbjct: 332 LGLALSDGERTVYTAIDNVVDN---ADLKAWLQDETKKKYIVDSKATQAMLHR-LGIELK 387 Query: 90 SKRWICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKGSIDSPPY 145 + + + S + + + + GK ++ D Sbjct: 388 GVEF-DLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGA--KWVVPGADHVAE 444 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 +R +A ++ D + L + E L + + G +++D Sbjct: 445 HVSR----KAVAVWKLQPLLDQKLKENEQFELYK--ELELPLAHILGKMESEGITVNIDT 498 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ + + + + ++ I +L + L + LF G+ ++ ++ T Sbjct: 499 LRQMGDDLKAKLEVMEATIYELAGEKF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAA 557 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL + + L + V + T + TGR S Sbjct: 558 DVLEKLQSEHDIVKYILEYRTLAKLQSTYIEGLIKEVHKEDSKVHTRFQQALTSTGRLSS 617 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + L AD Sbjct: 618 TNPNLQNIP------------------------IRLEEGRKIRKAFVPSKKDWILFAADY 653 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440 + IE RVLA + G++ ++AF G DI+ T FN D+V+ R K + Sbjct: 654 SQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNF--- 710 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ SQ++ + Sbjct: 711 -----------GIVYGISDYGLSQSLD------------------------------ITR 729 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + GV E ++ Sbjct: 730 KEAAIFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTILN--------------------- 768 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----N 616 RR D+ L + + +Q + DI+ + M Sbjct: 769 -----RRRYLPDITSSNFNLRSFAERT---------AMNTPIQGSAADIIKKAMIDMNAR 814 Query: 617 ATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G ++L VHDE++ E P + + +M +PLK E + Sbjct: 815 LEQEGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENAIK--LSVPLKVEFSYGATW 872 >gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501] gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501] Length = 881 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e] gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e] Length = 461 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 152/440 (34%), Positives = 226/440 (51%), Gaps = 16/440 (3%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + L+ + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILQELAPAHR---IHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K L SSD R RG LQ+ GA RT RW+G FQPQNL R ++ L + I AL + Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357 Query: 350 GETI--ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G+K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKE 427 IY T K F D + KE Sbjct: 418 IYCVTAGKMFGMDPDDIKKE 437 >gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20] gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains [Leuconostoc citreum KM20] Length = 893 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 86/628 (13%), Positives = 183/628 (29%), Gaps = 120/628 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112 +L + + + N +++ K LG+ + ++ ++A + + Sbjct: 372 ELRAVIENGDIKKNVFNVKA-QLILFKRLGLTLKGAQF-DFLLVAYLLDTTDNDNEMSTL 429 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + GK + +A+ + ++ + + T Sbjct: 430 AQRFDVYLTEDEEIYGKGAKYAVPDDEELVLMHLAHKADALIQLEMPALSALQSHQQTHL 489 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E L + + +G++ID + + E + ++E I L G Sbjct: 490 -------YTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIY-LEAGEK 541 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ T +L + IL + Sbjct: 542 FNLNSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVEHILQYRQLAKIKS 601 Query: 290 LKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V D ++ ++TGR S QN+P Sbjct: 602 TYVEGLLAVVHTEDSKIHTRFLQT-LTQTGRLSSVDPNLQNIP----------------- 643 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + S ++ AD + IE RVLA I G+ +AF NGED Sbjct: 644 -------MRTEEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQRAFLNGED 696 Query: 408 IYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 I+ T F + V R K + + Y L + + Sbjct: 697 IHAETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYG-----ISDYGLSNNLGISRAEAKR 751 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + F+++ Q ++ Q E + + R + +L Sbjct: 752 FIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKR---------RRYLPEIKSKNFNLRS 802 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + +N+ Sbjct: 803 FAER-----------------------------------------------TAMNSPIQG 815 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 K+ V D L + + +I+L VHDE++ E P+ ++ Sbjct: 816 ---SAADIIKIAMIKV----ADALKD-----NQLQANILLQVHDELIFEAPEDEIETLRD 863 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M A +P++ + + + Sbjct: 864 IVTRVMDSAV--ALDVPMQVDSHYGNTW 889 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 102/653 (15%), Positives = 185/653 (28%), Gaps = 163/653 (24%) Query: 38 DDEPVKLWDRTEQSAMPSDL--LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 D E K + + + + + D+ + H + +K L + Sbjct: 321 DGEKTKFYSLDRLNEIEEIFRNKKIITDDAKG-IYH------VCLEKGLTF---PEVCFD 370 Query: 96 TSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + A LK L + + + Sbjct: 371 ARIAAYVLNPADQNPGLKGL--YLKYDLPVYEDV-------------------------S 403 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + LF + + + +RL + E L + + G ++D + + ++ Sbjct: 404 LNIRGLFYLKKEMMKKIFEQEQERLF--YEIELPLTPVLAQMEHTGIQVDREALKEMSLE 461 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 + ++ ++L +I L + L + LF G+ ++ ++ T +L Sbjct: 462 LGEQIEELIREIYVLAGEEF-NLNSPRQLGVILFEKLGLPVIKKTKTGYSTDAEVLEELL 520 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 ILN + L ++ G+L T G + TGR + Q Sbjct: 521 PFHEIIGKILNYRQLMKLKSTYTDGLMPLINERTGKLHTTFNQTG-TLTGRLASSEPNLQ 579 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEAR 387 N+P +R I S G +V AD + IE R Sbjct: 580 NIP------------------------IRLELGRKLRKMFIPSPGYDYIVSADYSQIELR 615 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA + E I+A+ GEDI+ T ++ F +++V+ E RA K + + Y Sbjct: 616 LLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDFG 675 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 K+ Sbjct: 676 L--------------------------------------------GRDLKIPREVAGKYI 691 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 K + A + V + +L RR R + Sbjct: 692 KNYFANYPKVREYLDELVRTAREKGYVTTLFGRRRYIPELSSKNRTVQG----------- 740 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------G 621 G+ + +NT Q + DI+ M N K Sbjct: 741 ------FGERTAMNTPL------------------QGSAADIIKLAMINVEKELKARKLK 776 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L+VHDE+V E P V L +M +PL AE K + Sbjct: 777 SRLLLSVHDELVLEVPAEELEEVKALVKGVMESVVE--LKVPLIAEVGAGKNW 827 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 94/689 (13%), Positives = 188/689 (27%), Gaps = 141/689 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---------SAM 53 + D ET + + +++++DE + Sbjct: 338 IVAFDTETTGLDYI----------NNKLVGFSFSFNDEEAYYVPFGHFYLGVADQVSKDV 387 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKN 111 ++ + + V V HN F+ + L + + + +LA SL Sbjct: 388 AKQAMRRIFNSKV--VGHNIKFDLHFVTRFL-EEKDLPVYCDSMILAWLINPESALSLDK 444 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L K K D+ Y A + +AT Sbjct: 445 LSDKLLGHEMVHFKDTV-KKGENFSTVELDDACVYAAEDAFITRKLYKLFLKKLELQDAT 503 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E + + G +D + K + + + L + I +L Sbjct: 504 ----HLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEKFLVEVKETLEYLTKSIYELAGS 559 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + T L LF G+ + ++ T + +LS +L Sbjct: 560 EF-NINSTQQLGNILFEKLGLPVGKKTKTGYSTNEKVLSSLKDKHPIIPKLLEYREVHKL 618 Query: 288 AILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + + D R+ + G + TGR S QN+P Sbjct: 619 YSTYIDPLLKLANEDEQHRIHTSFVQTG-TATGRLSSKNPNLQNIP-------------- 663 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A GKK + D + +E R+LA + + + AF + Sbjct: 664 ----------TRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHD 713 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +DI++ T F ++ + +R I K + L Y G K L + Sbjct: 714 KDIHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGPKKLSDT-----LGITTKEAK 765 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 FE + +++ + + E + L+G + Sbjct: 766 EIIEKYFESFHTVKAYFRSIVESSKEKGYVETLLGRRRYF---DYENATPMY-------- 814 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E S+++ +V ++ +L + + Sbjct: 815 ----RAAYERESVNSVFQGSVSDVI----------------KLSMNKIH----------- 843 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 KL QA + + ++ E + +G Sbjct: 844 ----TIINEEKL-----QA-------KMLLQIHDE-----------LIFEVDEKVADELG 876 Query: 646 -TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLKA + Sbjct: 877 NRFRDIMDHIVE--LNIPLKASLNIGDNW 903 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 104/657 (15%), Positives = 185/657 (28%), Gaps = 137/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A V D ++ L Q+LR ET H + + G ++ Sbjct: 346 LAIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLSG-RGFELNGV 403 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A + K + L + + Sbjct: 404 A-HDTAIAAYLLRPGQRTYDL-----------KDVYQRHLQRQLSGDETQGQLSLLDAPD 451 Query: 152 HVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + + E T++L D E L L+ + G +D++ + + Sbjct: 452 SEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQ 511 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 ++ + ++ + + + L++ LF G+ ++ T + Sbjct: 512 LKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIE 571 Query: 267 HSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 D +L + L L +AV SDGR+ T AS TGR S Sbjct: 572 ALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTE 629 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +RS + G L+ AD + Sbjct: 630 PNLQNIP------------------------VRTQDGRRIRSAFVVGEGYETLLTADYSQ 665 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RV+A ++ + I+A+ GED++ ++ F P+D+V+ E R K M Sbjct: 666 IEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYG----- 720 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL + + Sbjct: 721 ---------LVYGLS------------------------------AFGLGQQLNIPAGEA 741 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + ++ + GV Q ++ E D Sbjct: 742 KQIMTSYFERFGGVKQYLDNVVEQARK--------------------------DGFTSTL 775 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----K 619 RR ++ D A R +Q + DI+ M K Sbjct: 776 FGRRRYLPELGSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDQELKK 826 Query: 620 NG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 G ++L VHDE+V E V + M S +PL+ + Sbjct: 827 AGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVSAGSGPNW 881 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 88/696 (12%), Positives = 178/696 (25%), Gaps = 156/696 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54 + + ID ET S +A I + ++ + + + Sbjct: 351 NYVAIDTETTSLN----------VHEAQIIGISVSFKEFESYYIPIETKEKKTIEKAYII 400 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 ++ + N F+ + KK IP + T + A SL Sbjct: 401 QKFNEFF-KAQPKLIGQNYKFDYKILKKHEFNVIPP--YFDTMIAAYVIDPNTKVSLDFL 457 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + ++ Y D + T Sbjct: 458 AEKYLMHKNIRYEEIV------------------AQNGTLKDIPLEMVSNYAAEDADITF 499 Query: 172 ELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 LFK E + + + G +D D + + + +E K ++ Sbjct: 500 RLFKIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIE 559 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNITQLAKDLIL 279 +I+K + T L LF + + T +L + ++ Sbjct: 560 NEIIKSIGIEF-NLNSTKQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLI 618 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L E V+ ++ + TGR S QN+P Sbjct: 619 QYRQIAKLKNTYTDNLIEFVNEKTNKIHTNFIQTK-TATGRISSTSPNLQNIP------- 670 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R G + AD + IE +LA ++ ++ Sbjct: 671 -----------------IKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESL 713 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF N +DI++ T ++ F +KV+ R I K + + Y L Sbjct: 714 IEAFKNKKDIHIKTASQLFKVDEEKVTSSMRRIAKSINFGIIY-----RMSAFRLSKELS 768 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +++ S F + + ++ D + + L+ R + + Sbjct: 769 IKREEAQKFIDSYFNLYSKIKTFIQNQIDFVRKNGYSETLLKR---------RRYIKEIN 819 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 G + + ++ V + Sbjct: 820 SQNYSERSGAERIAINSTIQGSASDI---------------------MKIAMIKVYNELK 858 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N + + E++ E+P+ Sbjct: 859 SKNLKSKI---------------------------LLQVHD-----------EMLIESPE 880 Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PLK K + Sbjct: 881 QECEEVNKIIKTMMENAYP--LKIPLKVNIETGKSW 914 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 99/681 (14%), Positives = 192/681 (28%), Gaps = 169/681 (24%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LF 80 A I A A + L +D L +L DET +F+ + Sbjct: 328 HHAPIVGIALANERGRFFL----RPETALADPKFLAWLGDETKKKT----MFDSKRAAVA 379 Query: 81 KKTLGIDIPSKRWI---------------CTSVLARTNGLPSSLKNACLALNFSEH-LTK 124 K GI++ + V A + + Sbjct: 380 LKWKGIELRGVVFDLLLAAYLLDPAQAAGD--VAA-----------VAKMHQYEAVRSDE 426 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 GK + P + T A H+ + + ++ L++ E Sbjct: 427 AVYGKGAKR--------TVPDEPTLAEHLARKAAAIWALEEPLMDELRRNEQDRLLTELE 478 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + L + + G ++D + ++ + ++ + ++ I +L + L Sbjct: 479 QPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEF-NINSPKQLGTV 537 Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 LF + ++ ++ T +L + IL+ + L + V Sbjct: 538 LFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHP 597 Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 G++ ++TGR S QN+P Sbjct: 598 VTGKVHTMFNQA-LTQTGRLSSVEPNLQNIP------------------------IRLEE 632 Query: 361 SDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R + + AD + IE RVLA IA +D I+AF G DI+ T F+ Sbjct: 633 GRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHV 692 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V+ R K + G+ +QN Sbjct: 693 SEEDVTANMRRQAKAVNF--------------GIVYGISDYGLAQN-------------- 724 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + A GV Q ++ + + Sbjct: 725 ----------------LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYV--TTL 766 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R +P + R + + +NT Sbjct: 767 LHRRRYLPDITSRNFN---------------VRSFAERTAMNT----------------- 794 Query: 600 NIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 +Q + DI+ + M + + ++L VHDE++ E P + L +M Sbjct: 795 -PIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVME 853 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + A +PLK + + + Sbjct: 854 QAV--ALRVPLKVDYHYGPTW 872 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 99/665 (14%), Positives = 180/665 (27%), Gaps = 153/665 (23%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----- 82 A A E D P L + L D V N F+ K+ Sbjct: 338 ADFAGFALKIGGETFVSRDVFLLQESP--LKEMLEDSAVQK---NV-FD---LKRTTYGL 388 Query: 83 -TLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135 LGI + + + + + + L GK A+ Sbjct: 389 YRLGIKAEGLSF-DLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDL--EVYGKGKNAKI 445 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + + + A + +D E L E + + Sbjct: 446 PADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKME 498 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ++ + +L+ A K+L+E I K + L + LF G+ ++ Sbjct: 499 MNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIK 557 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311 ++ T +L+ IL S + L + + DGR+ Sbjct: 558 KTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQ 617 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370 + TGR S QN+P +R + Sbjct: 618 T-LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPS 652 Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 +G + D + IE RVLA ++ + +AF G DI+ T K F+ +D+V+ Q Sbjct: 653 SPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQ 711 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y LD Sbjct: 712 RRRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------ 736 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + ++ G+ + + Sbjct: 737 ---------ISRKQAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIMH--------- 778 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR D+ + + R + +Q + D Sbjct: 779 -----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAAD 812 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 I+ M N K +V+ VHDE++ + P ++ + S+M + Sbjct: 813 IMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDV 870 Query: 662 PLKAE 666 PL A+ Sbjct: 871 PLVAD 875 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 88/657 (13%), Positives = 191/657 (29%), Gaps = 156/657 (23%) Query: 38 DDEPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 ++E + + + + + DE + ++H+ ++ +K DI +K Sbjct: 356 NEEKIYVVNINKIKNENYDKYLELIKKLFEDENIKKISHDIKNIYVILRKY---DIDAKN 412 Query: 93 W-ICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDC 147 + T + A S + + EE K K Sbjct: 413 FSFDTKIAAYLLQPSKS-DYILRDIILEKLSINIHESDEESKIKETYCIKEI-------- 463 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 Y K E + L + E L + ++ G++ID D + Sbjct: 464 --------------YEKLQKEIKSANMEELF--YNVELPLVKVLASMECEGFKIDKDRLT 507 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ E + + L+++I + D + + L LF + ++ ++ T + Sbjct: 508 EIGEKFKVKIETLEKEIHEFADEDF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEV 566 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + I+ + + L + DG++ + + TGR S Sbjct: 567 LEKLKDSHPIISKIIEYRQITKLDSTYVEGLKHVIDEDGKIHSSFNQTV-TTTGRLSSTE 625 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R + + + AD + Sbjct: 626 PNLQNIP------------------------IKYEMGREIRKVFVPNNEESVIFSADYSQ 661 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA IA ++ I AF + +DI+ T ++ F ID+V+ R+ K + + Sbjct: 662 IELRVLAHIANDEKLIDAFKHHKDIHTITASEVFKVHIDEVTPLMRSNAKAVNFGIV--- 718 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 719 -----------YGIG------------------------------AFSLSKDINVSRKEA 737 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + +++ V + ++ ++ +R + Sbjct: 738 KEYIDTYFSRYPNVKKYIDEIISKAEQDGFVTTIMNRKRYIPEVQS-------------- 783 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 R G+ +NT +Q + D++ M + + Sbjct: 784 ---RNKIVRSFGERLAMNT------------------PIQGSAADVIKLAMVHVYEELIK 822 Query: 624 ------IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ V + M + +PL+A+ + Sbjct: 823 RNLKSTLILQVHDELILNVYKDELEEVKQMVVDKMEGVMNLL--VPLEADVNVGTTW 877 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 104/657 (15%), Positives = 185/657 (28%), Gaps = 137/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A V D ++ L Q+LR ET H + + G ++ Sbjct: 346 LAIADKQRHVIAVDLSDIDPQDEKALAQWLRSET-PKYLHEAKATFHMLSG-RGFELNGV 403 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A + K + L + + Sbjct: 404 A-HDTAIAAYLLRPGQRTYDL-----------KDVYQRHLQRQLSGDETQGQLSLLDAPD 451 Query: 152 HVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + + E T++L D E L L+ + G +D++ + + Sbjct: 452 SEELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQ 511 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 ++ + ++ + + + L++ LF G+ ++ T + Sbjct: 512 LKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTGYSTAAKEIE 571 Query: 267 HSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 D +L + L L +AV SDGR+ T AS TGR S Sbjct: 572 ALAVKHPDPFLDHLLAHRENQKLKTT-LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTE 629 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +RS + G L+ AD + Sbjct: 630 PNLQNIP------------------------VRTQDGRRIRSAFVVGEGYETLLTADYSQ 665 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RV+A ++ + I+A+ GED++ ++ F P+D+V+ E R K M Sbjct: 666 IEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYG----- 720 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL + + Sbjct: 721 ---------LVYGLS------------------------------AFGLGQQLNIPAGEA 741 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + ++ + GV Q ++ E D Sbjct: 742 KQIMTSYFERFGGVKQYLDNVVEQARK--------------------------DGFTSTL 775 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----K 619 RR ++ D A R +Q + DI+ M K Sbjct: 776 FGRRRYLPELGSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDQELKK 826 Query: 620 NG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 G ++L VHDE+V E V + M S +PL+ + Sbjct: 827 AGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAAIS--LRVPLEVSAGSGPNW 881 >gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] Length = 885 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 177/665 (26%), Gaps = 153/665 (23%) Query: 28 AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFK 81 A + D V + + L L D+ V N F+ + Sbjct: 339 ADFVGFSLKMGDN-VYVSNDVSLLTKQP----LQTLLEDQAVNK---NV-FDLKRTIVGL 389 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARF 135 LGI + + + + ++ + + + GK A Sbjct: 390 HRLGIKANNINY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPDV--DIYGKGKKA-- 444 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 D + A V A + T L E + + + Sbjct: 445 --AIPDEEIFFNHLAGKVLAIEALKP--TLLKRLTEHEQDDLYETI--EMPVANVLAKME 498 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G + D +++L Q +L+ DI L G + L LF + + Sbjct: 499 ITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLELPPIK 557 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T +L +L+ + + L + + DGR+ Q Sbjct: 558 KTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYQQT 617 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370 + TGR S QN+P +R I Sbjct: 618 -LTATGRLSSVDPNLQNIP------------------------VRLEEGKKIRKAFIPSN 652 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 +G D + +E RVLA ++G++ +AF G DI+ T K F+ D+V+ R Sbjct: 653 KDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPDEVTTNMR 711 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + G+ S+N Sbjct: 712 RHAKAVNFGIV--------------YGISDYGLSKN------------------------ 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + ++ + + Sbjct: 734 ------LGISRKQAKEFIDNYFEQYPKIKDYMDKEINFAREKGYVETIMH---------- 777 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + + R + +Q + DI Sbjct: 778 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGGAADI 812 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M N K +++ VHDE++ + P ++ + +M +P Sbjct: 813 IKIAMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNAVH--LDVP 870 Query: 663 LKAEG 667 L A+ Sbjct: 871 LVADS 875 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 107/658 (16%), Positives = 194/658 (29%), Gaps = 130/658 (19%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGI 86 I A +D + D + P +L+ +L ++ + +++ + + L I Sbjct: 332 DILKFAL-YDGSNHVVIDADKVHDYP-ELIAWLENDKTEKIVYDAKKSY---IVAHRLDI 386 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 I + + ++ + +++ + K I F KG P D Sbjct: 387 AIKHI-VFDVMLASYIIDPSRTIDDVNSVVSYFDQHY----VKESIEVFGKGKKRHVPED 441 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +HV K +EA E + + L D E L + + + G + Sbjct: 442 EILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVATDL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++++ I + L +I G + L + LF + ++ ++ T Sbjct: 502 QEMEKEIQAKLDVLINNIYNAA-GESFNINSPKQLGVVLFETLELPVIKKTKTGYSTAVD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L D IL S + L + +S D R+ A +TGR S Sbjct: 561 VLEQLQGQHPIIDYILEYRTLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-QTGRLSSV 619 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R + + + AD + Sbjct: 620 DPNLQNIP------------------------IRLEEGRRIRKAFKSSDDNNVIFSADYS 655 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I ++ +AF N EDI+ T K FN D+V R K + Sbjct: 656 QIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNF----- 710 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQ+ + Sbjct: 711 ---------GIVYGISDYGLSQS------------------------------LGITRKQ 731 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + GV Q +D+ + + RR + Sbjct: 732 AKQFIDDYLDSFPGVKQYMEDIVKDCKAQGYVETLLHRRRYIPDITSRNFNLRG------ 785 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 + + +NT +Q + DI+ M N Sbjct: 786 -----------FAERTAMNT------------------PIQGSAADIIKLAMVNFVNEVK 816 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + + +M A +PLK E K + Sbjct: 817 HTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA--LALDVPLKVETSHGKTW 872 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 100/657 (15%), Positives = 184/657 (28%), Gaps = 136/657 (20%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWD----RTEQSAMPSDLLQYLRDETVMCVAHNS 73 ++G EQ + A A D+E V TE + LQ L+ E M + Sbjct: 321 EIGFSLLTEQGELFGLALAPDEEHVYFIKKEGFLTEGY-LTEKCLQLLQ-EGRMAYTIDL 378 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHL-TKMEEGK 129 + + GI + ++ A ++ GK Sbjct: 379 KEQLAFLR--AGIS-DRAKIADAAIGAYLLNPLKGQYPCEDIAKDYASLMIKGRAELFGK 435 Query: 130 ALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 A +A+ + + Y C A +A + L D E L Sbjct: 436 APLAKVMEEQPEELAQYACYLAYTAKAAMPVILQK-------LRENQMLELFRDMEMPLV 488 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G R++ + E + +L+++I + + L + LF Sbjct: 489 YTLYDMQEVGIRVNAQELKAYGEELYVRIVELEQEIYRDAGEEF-NINSPKQLGVILFEK 547 Query: 249 TGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + ++ T +L IL + + L+ +++DGR+ Sbjct: 548 LKLPGAKKTKSGFSTAADVLEKLAPDYAIVAKILEYRQLAKLKSTYADGLAGFIAADGRI 607 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 GT + TGR S QN+P +R Sbjct: 608 HGTFNQT-ITATGRISSTDPNLQNIP------------------------VRTELGRLLR 642 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G L+ AD + IE RVLA ++G++ I AF + DI+ T ++ F+ P D+V+ Sbjct: 643 KVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVT 702 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 QR K + + Y L + F+ + + + Sbjct: 703 PLQRRNAKAVNFGIVYG-----ISAFGLSEDLHISVKEAGEYIDKYFQTYPKVKDFLDNA 757 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + E + L + + Sbjct: 758 VKEAKEKGYAETLFHRRRPV---------PELKSGNFMQRS------------------- 789 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 G+ +N+ Sbjct: 790 ----------------------------FGERVAMNSPIQG------------------T 803 Query: 606 SRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 + DI+ M + ++L +HDE++ E + +V L M Sbjct: 804 AADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELLAQEMVNAV 860 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 90/652 (13%), Positives = 170/652 (26%), Gaps = 148/652 (22%) Query: 32 LCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + ++ + + + + E + + + I Sbjct: 336 GISISFKEGEGYFIASFDFNDEVKGKVKDIISFENIKKIGAYIQRDLHFL----DCKIKG 391 Query: 91 KRWICTSVLARTNGL---PSSLKNAC-LALNFSE-HLTKMEEGKALIARFCKGSIDSPPY 145 + S+ + SL LN + K Sbjct: 392 E-VFDVSLASYLLNPERQNHSLDILIREYLNRTSFIPQKY-------------------- 430 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 A ++ + E + E LF E L + ++ G ++D + Sbjct: 431 ----AAYLFPLKTILEERIKKEELEFVLFNI-------ETPLIPVLYSMEKWGIKVDKEY 479 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + L + + KKL+E+I +L + L LF + + T Sbjct: 480 LKSLSDEFCERIKKLEEEIYELAGMKF-NLNSPKQLSEVLFERLKLPSGKKGKTGYSTSS 538 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L + IL ++ + ++S GR+ G + TGR S Sbjct: 539 LVLQNLLNAHPIVIKILQYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTG-TATGRIS 597 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA +G V D Sbjct: 598 SSEPNLQNIP------------------------IKSEEGRKIRRAFIADDGYYFVSLDY 633 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++ E I AF GEDI+ T A+ F P D+V R+ K + + Y Sbjct: 634 SQIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDDLLRSRAKAVNFGIIY 693 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + S F+ + + + + E L G Sbjct: 694 G-----ISSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDKTIYEAREKLYVKTLFGR 748 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + K + + + Sbjct: 749 KRYI---------PEIRSINKQVRNAYERIAINAPIQGTAADII---------------- 783 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 +L ++ + N Sbjct: 784 -----KLAMIEIYKEIEEKN--------------------------------------LK 800 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672 I+L +HDE++ E P+ + M K +PL E K Sbjct: 801 SRILLQIHDELILEVPEEEMEFTPLMAKEKMEKVVE--LSVPLVVEISVGKN 850 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 98/681 (14%), Positives = 192/681 (28%), Gaps = 169/681 (24%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LF 80 A I A A + L +D L +L DET +F+ + Sbjct: 328 HHAPIVGIALANERGRFFL----RPETALADPKFLAWLGDETKKKT----MFDSKRAAVA 379 Query: 81 KKTLGIDIPSKRWI---------------CTSVLARTNGLPSSLKNACLALNFSEH-LTK 124 K GI++ + V A + + Sbjct: 380 LKWKGIELRGVVFDLLLAAYLLDPAQAAGD--VAA-----------VAKMHQYEAVRSDE 426 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 GK + P + T A H+ + + ++ L++ E Sbjct: 427 AVYGKGAKR--------TVPDEPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLLTELE 478 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + L + + G ++D + ++ + ++ + ++ I +L + L Sbjct: 479 QPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEF-NINSPKQLGTV 537 Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 LF + ++ ++ T +L + IL+ + L + V Sbjct: 538 LFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHP 597 Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 G++ ++TGR S QN+P Sbjct: 598 VTGKVHTMFNQA-LTQTGRLSSVEPNLQNIP------------------------IRLEE 632 Query: 361 SDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R + + AD + IE RVLA IA +D I+AF G DI+ T F+ Sbjct: 633 GRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHV 692 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V+ R K + G+ +QN Sbjct: 693 SEEDVTANMRRQAKAVNF--------------GIVYGISDYGLAQN-------------- 724 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + A GV Q ++ + + Sbjct: 725 ----------------LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYV--TTL 766 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R +P + R + + +NT Sbjct: 767 LHRRRYLPDITSRNFN---------------VRSFAERTAMNT----------------- 794 Query: 600 NIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 +Q + DI+ + M + + ++L VHDE++ E P + L +M Sbjct: 795 -PIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVME 853 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + + +PLK + + + Sbjct: 854 QAVT--LRVPLKVDYHYGPTW 872 >gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15] gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15] Length = 881 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKKVMEQAVS--LHVPLITDSSWGKTW 877 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 154/706 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----------- 51 + IDI+ S P+ QA I A A + Sbjct: 418 HVAIDIKATSIDPM----------QADICGIALALTPNKACYIPLGHKKSGGGEDLFASG 467 Query: 52 ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 L + + E V+ + F ++ + I + +++ Sbjct: 468 LAEGQIEAAKAFDVLRKLMESEAVLKSGLDIKFISVMLAQH---KITLRTTDDVQLMSYA 524 Query: 103 NGLP---SSLKNAC-LALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQ-A 155 +++ L + G + ++ + Y A+ + Sbjct: 525 LDAGRGAHDIESLAQKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGAETADIIIRL 584 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W L + E +++ L ER L + + RG ID ++ +L AQ Sbjct: 585 WLLMK--ARLISERMNNVYESL------ERPLIGVLARMERRGIMIDRQVLSRLSGDFAQ 636 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNIT 271 +L+++I K+ G + L +F G+ ++ T SIL Sbjct: 637 TASRLEDEIRKIA-GEDINPGSPKQLGDVIFGKMGLPGGQKTKTGAWSTSASILEDLAEE 695 Query: 272 -QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + IL+ S + L V+ + T A+ TGR S QN+ Sbjct: 696 GHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTYALAATTTGRLSSNEPNLQNI 755 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R IA G KLV AD + IE R+LA Sbjct: 756 P------------------------VRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLA 791 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA +AF + DI+ T ++ F P+ + E R K + + Y Sbjct: 792 EIADIPVLKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYG-----ISA 846 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + FE + ++ +D E + L G C Sbjct: 847 FGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCH------ 900 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + L + R ++R L Sbjct: 901 ---YPDIKASNASLRAFNERAAINARLQGTAADI-IRRAMIRMEDALAEKKL-------- 948 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + Sbjct: 949 -----------------------------------AA----RMLLQVHDE---------- 959 Query: 631 EIVSETPDTPY-FSVGTLCSLMTKN--PSWAKGLPLKAEGYEAKRY 673 +V E PD+ ++ + +M P+ +PL + A + Sbjct: 960 -LVFEVPDSEVGDTIPVIQEVMENAAFPAARLSVPLHVDARAAHNW 1004 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 90/697 (12%), Positives = 178/697 (25%), Gaps = 158/697 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-------MP 54 S + ID ET S +A I + ++ + + + Sbjct: 337 SYVSIDTETTSTN----------VYEAQILGISVSFKEFESYYIPIETKEKKSIEREYIT 386 Query: 55 SDLLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKN 111 ++ +T + N F+ +F + IP + T + A SL Sbjct: 387 QKFNEFF--KTKPKLIGQNYKFDYKIFTRHGFNAIPP--YFDTMIAAYVIDPNTKVSLDF 442 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + + + Y D + T Sbjct: 443 LSEKYLMHKNIKYQEIVSQNGTLKD------------------IPLETVSNYAAEDADIT 484 Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 LFK E + + + G +D D + + + + +E K + Sbjct: 485 FRLFKIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLI 544 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFL--ITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 + +I++ + + L LF + T +L + I Sbjct: 545 ENEIIQSIGIKF-NLNSSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKI 603 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + S + L + ++ ++ A TGR QN+P Sbjct: 604 IQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKA-ATGRILSTAPNLQNIP------ 656 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R G + AD + IE +LA + + Sbjct: 657 ------------------IKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGA 698 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF N EDI++ T ++ F DKV+ R + K + + Y A L Sbjct: 699 LIEAFKNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQE-----L 753 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +++ S F + + + D + + L+ R + + Sbjct: 754 SIKREEAQKFIDSYFNLYSKIKIFIQNRIDFARKNGYSETLLKR---------RRYIKEI 804 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 G + + ++ V + Sbjct: 805 NSQNHSERSGAERIAINSTIQGSASDI---------------------MKIAMVRVYNEF 843 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 N + + EI+ E+P Sbjct: 844 KSKNLKSKI---------------------------LLQVHD-----------EILIESP 865 Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 T + +M LPL+ K + Sbjct: 866 KQECEEAKTIIKEMMENAYP--LKLPLRINIETGKSW 900 >gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] Length = 881 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 134/658 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 AW ++ E+ +L+DE +++ + + K Sbjct: 337 VGVAWGNQEKIYVSNREELFESPAFTDWLKDEKRKKFVYDAKRTYVALNRY---TTAPKG 393 Query: 93 W-ICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDC 147 + A + + + + GK D + Sbjct: 394 IAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPADEEDFFAHLA 453 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + + K E + L + E L ++ + G ++D + Sbjct: 454 RKVAAITNLT-----PKLTEELAAKNQTALFE--EMELPLSMILAEMEITGIKVDASRLH 506 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ AQ +++E I G + L + LF G+ ++ ++ T + Sbjct: 507 QMKGEFAQRLHEIEEKIYAEA-GETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDV 565 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + IL + + L + + DG++ ++TGR S Sbjct: 566 LEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQTGRLSSVD 624 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383 QN+P +R + + +D + Sbjct: 625 PNLQNIP------------------------IRLEEGRKIREAFVPRETDWVIYSSDYSQ 660 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ + +AF G+DI+ +T + F + V+ R K + Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN + A Sbjct: 716 ---------GIVYGISDYGLSQN------------------------------LGITRKA 736 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + K+ GV +D+ Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYH----------------------- 773 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 RR D+ + T R +Q + DIL M + Sbjct: 774 ---RRRYLPDINSRNFNIRTFA---ERTAI------NTPIQGSAADILKIAMIDLAKRLK 821 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE+V E P++ + L +M + A +PL + K + Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 99/672 (14%), Positives = 182/672 (27%), Gaps = 152/672 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----T 83 A A E D P L L D V N F+ K+ Sbjct: 341 ADFAGFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-FD---LKRTTYGL 391 Query: 84 LGIDIPSKRW-ICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136 + I ++ + + + + + L GK A+ Sbjct: 392 YRLGIKAESLTFDLLLASYLVDNEKNSNDLGELVQGYDYYDLKTDL--EVYGKGKNAKIP 449 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + A + +D E L E + + Sbjct: 450 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKMEM 502 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ++ + +L+ A K+L+E I K + L + LF G+ ++ Sbjct: 503 NGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIKK 561 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 ++ T +L+ IL S + L + + DGR+ Sbjct: 562 TKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDKRDGRIHTRYLQT 621 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370 + TGR S QN+P +R + Sbjct: 622 -LTATGRLSSVDPNLQNIP------------------------ARTEEGKQIRKAFVPSS 656 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 +G + D + IE RVLA ++ + +AF G DI+ T K F+ +D+V+ QR Sbjct: 657 PDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQR 715 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y LD Sbjct: 716 RRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------- 739 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + ++ G+ + + Sbjct: 740 --------ISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMH---------- 781 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + + R + +Q + DI Sbjct: 782 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADI 816 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M N K +V+ VHDE++ + P ++ + S+M +P Sbjct: 817 MKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVP 874 Query: 663 LKAE-GYEAKRY 673 L A+ G+ Y Sbjct: 875 LVADAGWGHDWY 886 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 90/650 (13%), Positives = 178/650 (27%), Gaps = 141/650 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSK 91 A E V E + + L ++ + S ++ + Sbjct: 344 LALCLGGEKVF---LLEGPEVLKSFFRLLEEKGGLV----STYDAKSCLHALEPYGFKPE 396 Query: 92 RW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + A ++ + +A + + P Sbjct: 397 MIGFDVLLAAYLVNPAANNELGAIAFEHA-------------GFMLSPGAELPEKAQ--- 440 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 ++ + + + L E L + + G ++ + + L Sbjct: 441 ------AIYQLTPILKSKIKLQEQEYLY--YSVELPLAAVLADMEKVGVKVSEERLRSLS 492 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 + + ++ +L E+I KL G + L LF G+ V ++ T S+L Sbjct: 493 KELGEQLAQLSEEIYKLA-GERFNLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEK 551 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ +++ R + + L E + GRL T G + TGR + Sbjct: 552 LAEHEIVAKVLVYRQ-LAKLKSTYTDALPELIDPATGRLHTTFLQAG-TATGRLASAEPN 609 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P +R +A L+ AD + IE Sbjct: 610 LQNIP------------------------VRDSLGRRIRQAFVAEGPDYVLLSADYSQIE 645 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA ++ + +AF GEDI+ T A+ F +V+ E RA KV+ + Y Sbjct: 646 LRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMS- 704 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 L ++ + F + + + + Q E ++ Sbjct: 705 ----DYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILNR---- 756 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 R +L ++ + + + Sbjct: 757 -----RRYIPEILSSNRNQRQLGERLAINTTIQGSAADLI-------------------- 791 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 + D+ Q M Sbjct: 792 -KKAMVDIHRQLKG-----------------------QG-----FKCRMI---------- 812 Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 L VHDE++ E P V + M + + +P+KA ++ Sbjct: 813 LQVHDELLFEVPKEELEKVAPIIKSTMEQALPF--KVPIKANLKVGPNWQ 860 >gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 103/658 (15%), Positives = 206/658 (31%), Gaps = 132/658 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGID 87 I + +D + D + P +L+++L +ET + +++ + + L ID Sbjct: 333 ILKFGF-YDGVDHVVIDSDQLKEYP-ELIKWLENETTEKIVYDAKKTY---VVAHRLDID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 I + + + ++ + + N++++ + + I+ + KG P D Sbjct: 388 IKNI-VFDVMLASYIIDPSRTIDDVNSVVSNYNQNFVQDD-----ISIYGKGKKRHVPED 441 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 H+ + CKR++ A E +++ L + E L + + + G D++ + Sbjct: 442 TILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYTDINDL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++Q I + L +I + + L + LF + ++ ++ T Sbjct: 502 RQMQSEIQGKLDLLISNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKTGYSTAVD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L D IL S + L + +S D R+ A +TGR S Sbjct: 561 VLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISKDNRIHTRFNQTLA-QTGRLSSV 619 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R SN ++ AD + Sbjct: 620 DPNLQNIP------------------------VRLEEGRKIRKAFKPTSNDSVILSADYS 655 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I ++ +AF N +D++ T K F+ ++V+ R K + Sbjct: 656 QIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAKAVNF----- 710 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQ+ + Sbjct: 711 ---------GIVYGISDYGLSQS------------------------------LNITRKK 731 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + A GV Q D+ + + RR + Sbjct: 732 AKAFIDDYLASFPGVKQYMSDIVKDAKADGYVETLLHRRRYIPDINSRNFNLRG------ 785 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 + + +NT +Q + DI+ M + Sbjct: 786 -----------FAERTAMNT------------------PIQGSAADIIKLAMVEFDRQIK 816 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + +M +PLK + + Sbjct: 817 QTSYHAQLLLQVHDELIFEVPANEVEDFSLFVEEIMEHALQ--LDVPLKVDSNYGSTW 872 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 91/635 (14%), Positives = 180/635 (28%), Gaps = 136/635 (21%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC 113 +++ L + N+ E I+ LG+ I + + +++ + L Sbjct: 391 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDF-DFLLVSYLLDTTDNDNQLATLA 448 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW---QLFGEYCKRDVEAT 170 N G + + + + + +A+ + + + E Sbjct: 449 NRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDHQQAELY 508 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R++ E L + ++ G ++D + KL + Q +L++ I + Sbjct: 509 RQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQ 558 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF+ I + ++ T ++L LIL + Sbjct: 559 EF-NINSPKQLADLLFVHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 617 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L E V+ D T ++TGR S QN+P Sbjct: 618 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP---------------- 661 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + G ++ +D + IE RVLA + G++ KAF +GE Sbjct: 662 --------DRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGE 713 Query: 407 DIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T F D+ + +QR K + G+ +Q Sbjct: 714 DIHAATARSIFGLSTDQKITFDQRRRAKAVN--------------FGIVYGISDFGLAQR 759 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + + + V + Sbjct: 760 ------------------------------LGISRIEGKEIIQTYFHEFPKVKNWIDSII 789 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RR D+ L + Sbjct: 790 ALAHKQGYVETIAQ--------------------------RRRYLPDIHSKNFNLRSFA- 822 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639 R T +Q + DI+ M + ++L VHDE++ E P Sbjct: 823 --ERTAT------NTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQ 874 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PL+ E + + Sbjct: 875 EIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907 >gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071] gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317] gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071] gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317] Length = 881 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 281 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 92/665 (13%), Positives = 180/665 (27%), Gaps = 135/665 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL 84 + A + ++ D T L D + H+ F I++ Sbjct: 341 KLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNF--IVYLNNR 398 Query: 85 GIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSI 140 GID + T + A ++ LN S + GK K Sbjct: 399 GIDFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLFKDMQ 457 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTI 194 G Y + +R++ L D E L + Sbjct: 458 PDVLSK-----------TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADM 506 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G+++++D +++ + + ++ + ++I L + L + LF G+ ++ Sbjct: 507 EYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPII 565 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 ++ T +L + + IL L ++ G++ + Sbjct: 566 KKTKTGYSTDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN 625 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P S +R I Sbjct: 626 QTV-TATGRISSTEPNLQNIP------------------------IKLEMSRKIRKVFIP 660 Query: 371 -SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 L+ AD + IE RVLA I ++ I AF N EDI+ +T A F P ++V+ R Sbjct: 661 SDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMR 720 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K + + Y G + L + + + + + + + ++ Sbjct: 721 SRAKAVNFGIVYGIG-----DFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEG 775 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 E + R + ++ V + Sbjct: 776 KEKGFVTTMFMR---------RRYLPELKSRNFNIRSFGERVAMNTPIQGSAADII---- 822 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 ++ V G+ KL ++ Sbjct: 823 -----------------KIAMVKVHGELKKR---------------KLKSRLI------- 843 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGY 668 ++ ET V + M S +PL E Sbjct: 844 -----LQVHDE-----------LIVETFKDEKEEVEKILLEGMQNAVS--LKVPLVVEIK 885 Query: 669 EAKRY 673 + Sbjct: 886 SGSNW 890 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 94/652 (14%), Positives = 178/652 (27%), Gaps = 136/652 (20%) Query: 31 TLCAYAWDDEPVKLWDRTEQSA--MPSDLLQYLR-DETVMCVAHNSLFERILFKKTLGID 87 AW+D V + + L LR + + H++ + F Sbjct: 353 VAVGLAWEDG-VAVLGTAGIEPAALAGTLEPLLRVNP----IFHDAKRALVWFSNAGAGV 407 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 T V +S + L + EG DSP Sbjct: 408 ADPGG--DTMVAGYLLNPSASRHDLPE-LCLEHLNLALVEG------------DSPQLAA 452 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 R V K V L++R+ E L + + G ++++ + Sbjct: 453 ARRAAVIRLLHRELASKLQVAGMENLYRRV------ELPLTRVLGAMESYGVAVNMETLD 506 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 + + L E I +L + L + LF G+ V ++ T ++ Sbjct: 507 LMGIELEGGLAALTEAIYELAGEEF-NLNSPKQLAVILFEKLGLPPVKRTKTGFSTDAAV 565 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 L ++ + ++ L V+ G L + + TGR S Sbjct: 566 LEELACRHPIAAKLVEYRQLAKLKSTYVDGLKPLVNPRTGSLHTSFNQTV-TATGRLSSS 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P +R + G+ L+ AD + Sbjct: 625 EPNLQNIP------------------------VRLELGRRLRKAFVPHGPGRLLLAADYS 660 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA I+G++ I AF GEDI+ T A+ F P+ +V+ R K + + Y Sbjct: 661 QIELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVYG 720 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + + F + +++ + + + L+G Sbjct: 721 -----ISDYGLSRDLGISRSEAHDYIERYFRRYRGVKAYLEEIVARARQEGYVTTLLGR- 774 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + +++ Sbjct: 775 --------RRYLPDLFSSNRNVRSFGERTAMNTPIQGTAADII----------------- 809 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 ++ + A Sbjct: 810 ----KMAMVKIFRLLEAQYPAAR------------------------------------- 828 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ + PD +V L M +PL+ + + Sbjct: 829 -MILQVHDELIFDVPDDDLPAVAGLVKDTMEHTLE--LQVPLQVDLKAGPNW 877 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 91/662 (13%), Positives = 184/662 (27%), Gaps = 141/662 (21%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTLGI 86 L +A T + + + L +T+ N F+ + GI Sbjct: 340 LVGFAIGQGNKWYV--TNDPELLHNQHVSDLLTSKTIKK---NL-FDAKRTYVGLYRQGI 393 Query: 87 DIPSKRWICTSVL-ARTNGLPSSLKNACLA------LNFSEHLTKMEEGKALIARFC--K 137 ++ + + +L + ++ + N + GK Sbjct: 394 ELANVDFD--MLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTD--EEVYGKGAKRHIDPQS 449 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + +A +F + D +L+ D E + + + Sbjct: 450 PAFLAHLVHKVKAIDALHDGMFKD---LDAHNQSKLYW------DIEIKIAFVLAHMEIN 500 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D + + + ++++ I + + L LF + ++ + Sbjct: 501 GIKVDAATLEGMGSKFKERLAEIEQTIFQEAGEEF-NIGSPKQLGKILFEKLRLPILKKT 559 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L +L+ S ++ L + + D T Sbjct: 560 KTGYSTSVDVLEKLAPDAPIVQNVLDYRQISKLQSTYVDGLLKVIHPDDSKVHTRYLQTL 619 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNG 373 ++TGR S QN+P +R I G Sbjct: 620 TQTGRLSSVDPNLQNIP------------------------VRSEEGRLIRQAFIPSHPG 655 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIG 432 ++ +D + IE RVLA I + AF NGEDI+ TT + F P ++V+ E R Sbjct: 656 WQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQA 715 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y + + + FE++ + + + + Sbjct: 716 KAVNFGIVYG-----ISDFGLASNTGITRKQAHQFIERYFEEYPGVKKYTEDIVEFARNH 770 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + R + +L Sbjct: 771 RYVETIAHR---------RRYLPDINSKSFNLRSFAER---------------------- 799 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 + +NT Q + D + Sbjct: 800 -------------------------TAMNTPI-QGSAADIIKIAMINM------ADAIK- 826 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 ++L VHDE++ E PD +V L S+M +PLK E + K Sbjct: 827 ------DMKTRMLLQVHDELIFEVPDEELDTVKQLIPSVMDSAIH--LNVPLKVESHWGK 878 Query: 672 RY 673 + Sbjct: 879 TW 880 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 87/712 (12%), Positives = 177/712 (24%), Gaps = 174/712 (24%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------------------EQSAM- 53 GV E + A ++E + + Sbjct: 253 KTAGVSLVTENGRVFGAGLALNEEEIYYIPVEGMITEGYLCGKLEGLLHKVSESNTENIM 312 Query: 54 ---PSDLLQYLRDE--TVMCVAHN----SLFERIL--------FKKTLGIDIPSKRWICT 96 D+ + +E V N +++ K + D Sbjct: 313 KSNTDDVKKDPENEISDV-----NTDGTLKYDKKCVCALDVKALLKHIKSD-DPMAVFDA 366 Query: 97 SVLARTNGL---PSSLKNACLALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 V A + + + GK + + Sbjct: 367 GVAAYLLNPLKSSYTYDDMAKEYLNGRILPAREELLGKKTVEK-AWEESAEGLAAWACYM 425 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 A C+ + + E L ++ G + + + E Sbjct: 426 AYTALACRKPMCEALRDTGMWNV-----YTQIELPLIFTLDSMEKWGISVKSEELKSYGE 480 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268 ++ +L++ I + + + + LF G+ ++ T IL Sbjct: 481 KLSVRIGELEKQIWQQAGEEF-NINSPKQMGVILFEKLGLKGGKKTKTGYSTAADILEKL 539 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 IL + + L ++ DGR+ T + TGR S Q Sbjct: 540 APEYPIVKDILEYRQLAKLKSTYADGLVGEIAEDGRIHSTFNQT-ITATGRISSTEPNLQ 598 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R + G + AD + IE RV Sbjct: 599 NIP------------------------VRMELGRLIRKVFVPEEGYVFLDADYSQIELRV 634 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++G++ I+A+ +DI+ T ++ F+ P D+V+ QR K + + Y Sbjct: 635 LAHMSGDEKLIQAYKEAQDIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVYG-----I 689 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + L + + FE + + + + ++ E + G + Sbjct: 690 SSFGLSQDLSITRKEAAEYIERYFETYPKIKGFLDGLVEEGKEKGYVTTMFGRRRPI--- 746 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + Sbjct: 747 ------PELKSGNFMQRS------------------------------------------ 758 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 G+ +N+ K+ N + Sbjct: 759 -----FGERVAMNSPIQG---TAADIIKIAMN---------------RVYRRLKDENLKS 795 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL VHDE++ ET V + M + L+ + ++ + Sbjct: 796 RLVLQVHDELLIETCKEEIPQVSAILEEEMKGAAK--LSVELEVDMHQGNNW 845 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 188/659 (28%), Gaps = 137/659 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I A ++D + + ++ D+ + ++ K G++I Sbjct: 330 IVGFAV-YNDSEAYFIGTEDALNCT-NFKNFISDKKIEKYGYDIKKSINA-AKWHGLEIE 386 Query: 90 SKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLT-KMEEGKALIARFCKGSIDSPP 144 + + SLK+ C + + + GK + Sbjct: 387 -NYVFDLQLASYILNP--SLKDEIRSVCEYYEYYDVFYDEEVYGKGAKKK--VPETSRVA 441 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + K + E EL+K D E + + + +G ++D Sbjct: 442 EHLIKQAKAIYILKDQAIEKLNNENQFELYK------DVEMPVAKILARMEFQGAKVDSV 495 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 ++ +L+E +E L+++I L + + L LF G+ ++ T Sbjct: 496 VLKQLEEQFGREINILEKEIHTLANREF-NIASPKQLGEVLFEDLGLPNGKKTKTGYSTS 554 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 IL+ D +L S + L + V DG++ ++TGR S Sbjct: 555 VDILNKLKDIHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGKIHTIYNQA-LTQTGRLS 613 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R + LV D Sbjct: 614 STDPNLQNIP------------------------VKTPEGKLIRKAFVPEYDY-LVSFDY 648 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA +AG IKAF +DI+ T ++ F P ++V R K + Sbjct: 649 SQIELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNF---- 704 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ ++ V + Sbjct: 705 ----------GIIYGMSDFGLAEQV------------------------------GVSVG 724 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 K + + + + ++ +R Sbjct: 725 EAREFIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKR------------------- 765 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 + + +Y+ + + + +Q + DI+ M + Sbjct: 766 --------FIREINEKNYMRQEFGKRL--------AMNSPIQGSAADIIKVAMIKVDELL 809 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ + V + + MT + LKAEG A + Sbjct: 810 KKHQLKSKMILQVHDELIFDVYQEELQEVMEIVAKGMTTAIK--MDVELKAEGSYAVNW 866 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 89/609 (14%), Positives = 161/609 (26%), Gaps = 147/609 (24%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ +LA ++ + Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---KRLIPLSDGERDLWLLD 191 A + + L K L + E+ L + Sbjct: 400 ----------------WTEDAAHRALLSERLHRNLLKRLQGEEKLLWLYHEVEKPLSRVL 443 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-- 249 + G R+D+ + L +A+E ++L+E++ +L + L LF Sbjct: 444 AHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRL 502 Query: 250 ---GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRL 305 G T ++L + IL + ++ L V + GRL Sbjct: 503 PALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPNTGRL 562 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 A+ TGR S QN+P +R Sbjct: 563 HTRFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIR 597 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 598 RAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVD 657 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 R K + + Y A L + F+ + + + Sbjct: 658 PLMRRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKT 712 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 ++ + + L G R + K + E + Sbjct: 713 LEEGRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL- 762 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 +L + + Sbjct: 763 --------------------MKLAMVKLFPRLREMG------------------------ 778 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLK 664 ++L VHDE++ E P V L M K A +PL+ Sbjct: 779 ----------------ARMLLQVHDELLLEAPQAGAEEVAALAKEAMEKAYPLA--VPLE 820 Query: 665 AEGYEAKRY 673 E + + Sbjct: 821 VEVGMGEDW 829 >gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20] gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20] Length = 881 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 134/658 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 AW ++ E+ +L+DE +++ + + K Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKG 393 Query: 93 W-ICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDC 147 + A + + + + GK D + Sbjct: 394 IAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPADEEDFFAHLA 453 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + + K E + L + E L ++ + G ++D + Sbjct: 454 RKVAAITNLT-----PKLTEELAAKNQTALFE--EMELPLSMILADMEITGIKVDASRLH 506 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ AQ +++E I G + L + LF G+ ++ ++ T + Sbjct: 507 QMKGEFAQRLHEIEEKIYAEA-GETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDV 565 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + IL + + L + + DG++ ++TGR S Sbjct: 566 LEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQTGRLSSVD 624 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383 QN+P +R + + +D + Sbjct: 625 PNLQNIP------------------------IRLEEGRKIREAFVPREADWVIYSSDYSQ 660 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ + +AF G+DI+ +T + F + V+ R K + Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN + A Sbjct: 716 ---------GIVYGISDYGLSQN------------------------------LGITRKA 736 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + K+ GV +D+ Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYH----------------------- 773 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 RR D+ + T R +Q + DIL M + Sbjct: 774 ---RRRYLPDINSRNFNIRTFA---ERTAI------NTPIQGSAADILKIAMIDLVKRLK 821 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE+V E P++ + L +M + A +PL + K + Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877 >gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603] gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603] Length = 876 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 99/665 (14%), Positives = 190/665 (28%), Gaps = 146/665 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGID 87 I + V + + E SDL+ +L + +++ + + L ID Sbjct: 333 ILKFGLYTGEHHV-VINADEIKQF-SDLVNWLENPNTAKTVYDAKKTY---VVAHRLDID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSID---- 141 I + ++ + + ++ + ++ + + Sbjct: 388 IQNIQF-DVMLSSYIIDPSRTIDDVNSVVSLYGQHYVQDNVAIYGKGKKHHIPEDEILNK 446 Query: 142 --SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + + A+ + EY + + A EL L + + + G Sbjct: 447 HVASIIEAVSASKSEMQNQLKEYNQESLLADLEL------------PLAEILSEMEEIGI 494 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 D++ + +++ I ++ L ++I + + L + LF + ++ ++ Sbjct: 495 YTDVNDLQHMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKT 553 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L D IL S + L + +S D R+ A + Sbjct: 554 GYSTAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-Q 612 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKK 375 TGR S QN+P +R S Sbjct: 613 TGRLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSTDSV 648 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + IE RVLA I ++ +AF NG DI+ T K F+ D+V R K + Sbjct: 649 ILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGADEVDSLMRRQAKAV 708 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ SQ+ Sbjct: 709 NF--------------GIVYGISDYGLSQS------------------------------ 724 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + GV Q D+ + Q+ R +P + R Sbjct: 725 LGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAK--AQDFVETLLHRRRYIPDITSRNFN 782 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + + +NT +Q + DI+ M Sbjct: 783 L---------------RSFAERTAMNT------------------PIQGSAADIIKLAMV 809 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 K ++L VHDE++ E P S +M +PLK E Sbjct: 810 QFNKEVQHTKYHAKLLLQVHDELIFEVPKDEVESFSQFVEDIMESALE--LDVPLKVESS 867 Query: 669 EAKRY 673 + Sbjct: 868 YGATW 872 >gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10] gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10] Length = 881 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 94/658 (14%), Positives = 182/658 (27%), Gaps = 134/658 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 AW ++ E+ +L+DE +++ + + K Sbjct: 337 VGVAWGNQEKIYVSNREELFESPVFTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKG 393 Query: 93 W-ICTSVLARTNGLPSSLKN---ACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDC 147 + A + + + + GK D + Sbjct: 394 IAFDVLLAAYLLDTNDTNNDIAGVAAHYGYDAIQSDEAIYGKGAKKGLPADEEDFFAHLA 453 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + + K E + L + E L ++ + G ++D + Sbjct: 454 RKVAAITNLT-----PKLTEELAAKNQTALFE--EMELPLSMILADMEITGIKVDASRLH 506 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ AQ +++E I G + L + LF G+ ++ ++ T + Sbjct: 507 QMKGEFAQRLHEIEEKIYAEA-GETFNLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDV 565 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + IL + + L + + DG++ ++TGR S Sbjct: 566 LEQLKEQAPIVEDILTYRQIAKIQSTYVEGLLKVIQGDGKVHTRYVQT-LTQTGRLSSVD 624 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383 QN+P +R + + +D + Sbjct: 625 PNLQNIP------------------------IRLEEGRKIREAFVPREADWVIYSSDYSQ 660 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ + +AF G+DI+ +T + F + V+ R K + Sbjct: 661 IELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNF----- 715 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQN + A Sbjct: 716 ---------GIVYGISDYGLSQN------------------------------LGITRKA 736 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + K+ GV +D+ Sbjct: 737 AQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYH----------------------- 773 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 RR D+ + T R +Q + DIL M + Sbjct: 774 ---RRRYLPDINSRNFNIRTFA---ERTAI------NTPIQGSAADILKIAMIDLAKRLK 821 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE+V E P++ + L +M + A +PL + K + Sbjct: 822 EEKLAATMLLQVHDELVFEVPESELPRLDALVKEVMEQAV--ALHVPLLTDSNWGKTW 877 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 99/672 (14%), Positives = 182/672 (27%), Gaps = 152/672 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----T 83 A A E D P L L D V N F+ K+ Sbjct: 339 ADFAGFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-FD---LKRTTYGL 389 Query: 84 LGIDIPSKRW-ICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136 + I ++ + + + + + L GK A+ Sbjct: 390 YRLGIKAESLSFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDL--EVYGKGKNAKIP 447 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + A + +D E L E + + Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKMEM 500 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ++ + +L+ A K+L+E I K + L + LF G+ ++ Sbjct: 501 NGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIKK 559 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 ++ T +L+ IL S + L + + DGR+ Sbjct: 560 TKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQT 619 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370 + TGR S QN+P +R + Sbjct: 620 -LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSS 654 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 +G + D + IE RVLA ++ + +AF G DI+ T K F+ +D+V+ QR Sbjct: 655 PDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQR 713 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y LD Sbjct: 714 RRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------- 737 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + ++ G+ + + Sbjct: 738 --------ISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMH---------- 779 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + + R + +Q + DI Sbjct: 780 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADI 814 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M N K +V+ VHDE++ + P ++ + S+M +P Sbjct: 815 MKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVP 872 Query: 663 LKAE-GYEAKRY 673 L A+ G+ Y Sbjct: 873 LVADAGWGHDWY 884 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 73/481 (15%), Positives = 146/481 (30%), Gaps = 85/481 (17%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCAIDGDQAQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK + A + G Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------SFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L + L+ G+ ++ + T +++L+ +++ + S Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKL 629 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E ++ GR+ + A TGR S QN+P Sbjct: 630 KSTYTDRLPEQINPRTGRIHTSYHQAVA-VTGRLSSSDPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KL+ AD + IE R++A +A ++ + AF N Sbjct: 674 ---------IRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDL 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T A+ F ++ V+ + R K + L Y + + + Sbjct: 725 DVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMS-----AFGLAKQIGVDRKQSQA 779 Query: 467 K 467 Sbjct: 780 Y 780 >gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039] gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039] Length = 881 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKEAGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 104/675 (15%), Positives = 186/675 (27%), Gaps = 128/675 (18%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPSD----LLQYLRDET 65 L G A A +T A + +E ++ L L D+ Sbjct: 336 LAVSGTPEEAMDARLTALALSSAAGDACFVLAEFIGSASEGQMFATEGHSGLAALLGDKK 395 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFSEHL 122 + AHN+ + L G ++ + T + A G +L Sbjct: 396 MSKTAHNAKYLMNLLLSA-GQEVKGLDF-DTMIAAHLLGEK-NLAIKDLVFEHFGIEIAD 452 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 + + + + + Q + K A + + + Sbjct: 453 IE--------NILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQLAETRLMDLFAR 504 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G +D DL+ + E ++ KL+EDI G + L Sbjct: 505 VEMPLLPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQA-GHSFNIGSPQQLG 563 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ ++ T +L DLIL L+TL V Sbjct: 564 RILFDELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYRMLVKLKSTYLDTLPRMV 623 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + R T + TGR S QN+P G Sbjct: 624 NPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP------------------------VRGE 659 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA G L+ D + I+ RVLA ++ + I+AF + +DI+ T A+ N Sbjct: 660 MGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNV 719 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 KV+KEQR + K + + Y + +L + + FE + + Sbjct: 720 SPSKVTKEQRRLAKTVNFGVIYGMS-----SYGLEQATELSLEEADKFIKAYFEKYPRVA 774 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + ++ Q + L+G R + + L E + Sbjct: 775 VYFAEIKQQARTQGYVETLLGR---------RRYIPEINSPNRILRESAERMAINMPVQG 825 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 +L + + Sbjct: 826 TSADII---------------------KLAMVRLDEKIKEEKLKSRL------------- 851 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWA 658 + ++ E P + L M+ A Sbjct: 852 --------------LLQVHDE-----------LIFEVPTAELGRMSDLLIETMSGAV--A 884 Query: 659 KGLPLKAEGYEAKRY 673 +PLK E + Sbjct: 885 FEIPLKVELKSGANW 899 >gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679] gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679] Length = 881 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 194/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQA-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 85/586 (14%), Positives = 156/586 (26%), Gaps = 125/586 (21%) Query: 90 SKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 V A + L + K C D+ Sbjct: 389 GDTVYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKTDLIKKMSYKDACAKEQDNF-- 446 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 TR + A+ F E + L E L + D G + + Sbjct: 447 --TRMAGLMAYTAFAAGKPLSERLAAEGMEDLYRNI--ELPLIYTLFHMEDEGIAVRREE 502 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + + ++ L+++I ++T + L LF I ++ T Sbjct: 503 LTAYGGKLKKQIAVLEKEIWEMTGQEF-NINSPKQLGEILFEKMQIKGGKKTKTGYSTAA 561 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL+ + + L + DGR+ + TGR S Sbjct: 562 DVLEKLAPDYPVIQKILDYRQYTKLNSTYADGLGTYIKEDGRIHSRFNQT-ITATGRISS 620 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R + NG + AD + Sbjct: 621 TEPNLQNIP------------------------IRMELGREIRKVFVPRNGFLFLDADYS 656 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++G++ I+A+ +DI+ T ++ F+ P+++V+ QR K + + Y Sbjct: 657 QIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQRRNAKAVNFGIVYG 716 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + FE + Q +S + E + G Sbjct: 717 -----ISAFGLSEDLSISRKEAMEYIERYFETYPQVKSFLDSLVAHAKEQGYVTTMFGRR 771 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + Sbjct: 772 RPV---------PELKSSNFMQRS------------------------------------ 786 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 G+ +N+ + DI+ M + Sbjct: 787 -----------FGERVAMNSPIQG------------------TAADIIKIAMIRVDERLR 817 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 ++L VHDE++ ET + +V + M S L Sbjct: 818 RENLRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAASLKVEL 863 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 93/689 (13%), Positives = 193/689 (28%), Gaps = 141/689 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSD 56 + D ET S + A + ++A+++ + + Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378 Query: 57 LLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN-A 112 + V N ++ + K I++ + T +L+ L Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLNTNEKVGLDYQI 436 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATR 171 + K + + A + K+ ++ + Sbjct: 437 DKYFDHKMISFTDVVKKG------ENFSNVDIERACEYAAEDALMTLRLFKKQLEIFKEK 490 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E + L + E D + + G ++D++L+ + +EL + +L I + + Sbjct: 491 EEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGVE 550 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ ++ T +++L+ L+L + Sbjct: 551 F-NINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYREAYKLQ 609 Query: 289 ILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E S D R+ + G + TGR S QN+P + S Sbjct: 610 STYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDSTIQ------- 661 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I +G KLV D + IE R+LA + + ++AF N Sbjct: 662 -----------------IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDL 704 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T K F ++ +KE+R I K + L Y G+K L + Sbjct: 705 DIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGET-----LGIPSKEAKQ 756 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 S FE ++ + + ++D L+ + Sbjct: 757 YIDSYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRL---------------FDFNSAN 801 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 +++ L + Y ++ Sbjct: 802 AMMKAAYLREAVNT---------------------LFQGSAADLIKLAMINIYQKYKDNE 840 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG- 645 + + +V E D + Sbjct: 841 N----------------------IKL-LLQIHDE-----------LVFEVKDEFVEEITF 866 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++ ++M + +PLK ++ Sbjct: 867 SIKNIMENI--YKLNVPLKVSLSVGSSWK 893 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 99/672 (14%), Positives = 182/672 (27%), Gaps = 152/672 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK----T 83 A A E D P L L D V N F+ K+ Sbjct: 339 ADFAGFALKIGGETFVSRDVFLLQESP--LKGMLEDSAVQK---NV-FD---LKRTTYGL 389 Query: 84 LGIDIPSKRW-ICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136 + I ++ + + + + + L GK A+ Sbjct: 390 YRLGIKAESLTFDLLLASYLVDNEKNSNDLGELVQGYDYFDLKTDL--EVYGKGKNAKIP 447 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + A + +D E L E + + Sbjct: 448 ADDAVFFNHLAGKTAAIAALKDSLLKQLKDHE-----QDDLYDSI--ELPTARVLAKMEM 500 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ++ + +L+ A K+L+E I K + L + LF G+ ++ Sbjct: 501 NGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLGVILFEKLGLPVIKK 559 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 ++ T +L+ IL S + L + + DGR+ Sbjct: 560 TKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQSTYVKGLLDVIDERDGRIHTRYLQT 619 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-- 370 + TGR S QN+P +R + Sbjct: 620 -LTATGRLSSVDPNLQNIP------------------------TRTEEGKQIRKAFVPSS 654 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 +G + D + IE RVLA ++ + +AF G DI+ T K F+ +D+V+ QR Sbjct: 655 PDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQR 713 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y LD Sbjct: 714 RRAKAVNFGIVYG-----ISDYGLSKNLD------------------------------- 737 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + ++ G+ + + Sbjct: 738 --------ISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMH---------- 779 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + + R + +Q + DI Sbjct: 780 ----------------RRRYLPDIHAKNFNVRSFA---ERTAI------NSPIQGSAADI 814 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M N K +V+ VHDE++ + P ++ + S+M +P Sbjct: 815 MKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAAVK--LDVP 872 Query: 663 LKAE-GYEAKRY 673 L A+ G+ Y Sbjct: 873 LVADAGWGHDWY 884 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 90/637 (14%), Positives = 172/637 (27%), Gaps = 137/637 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKN 111 ++ D V +++ + K LG+D+ + + L + N Sbjct: 367 QAFKNWIEDPHAKKVLYDAK-RSQVILKGLGMDLEGVS-DDVLIASYLIHARDLSGDVAN 424 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD---CTRANHVQAWQLFGEYCKRDVE 168 N E + + YD + + + + D Sbjct: 425 VAREFNLDYLAY-DSEVYGKGKKVAVPEDKTRLYDHLVAKVSVINDLLPIIKDRLEADEM 483 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E L + + G +D ++ L + ++ +L E+I + Sbjct: 484 VEL--------YRKIELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQLQEEIYREA 535 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + T L LF G+ ++ T +S L DLIL Sbjct: 536 GVEF-NINSTQQLSKVLFEDMGLKGGKKTKSGNYSTAQSELEKLQG-VPIIDLILAYRQL 593 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + + + + DG++ + TGR S QN+P Sbjct: 594 AKLQSTYVQGILDYIHQDGKVHSRFIQT-LTTTGRLSSADPNLQNIP------------- 639 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + + +D + IE RVLA ++G+ +AF Sbjct: 640 -----------IRTEEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDPHLQEAFK 688 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +DI+ T AK F+ +SK++R K + G+ S Sbjct: 689 ENKDIHTATAAKVFHKDEKDISKDERRQAKAVN--------------FGIVYGISDYGLS 734 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 QN+ + + + + V + Sbjct: 735 QNLS------------------------------ISRQEAKAFIDKYFEIYPKVAEYMDK 764 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 E + RR D+K Sbjct: 765 SVEIAREAGYAKTLFN--------------------------RRRYLPDLKAKN---YNV 795 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 S R + +Q + DI+ M + +++L VHDE++ E Sbjct: 796 RSFAERTAM------NSPIQGTAADIIKVAMVEMDQALKEHQLQANLLLQVHDELIFEVA 849 Query: 638 DTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M S +PL + + Sbjct: 850 KEDLEDLAALVKDVMENAVS--LDVPLIVDSNYGSTW 884 >gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68] gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162] gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68] gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162] gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] Length = 881 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A K E + + L E L ++ + G ++D Sbjct: 450 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] Length = 881 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A K E + + L E L ++ + G ++D Sbjct: 450 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 829 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 877 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 93/689 (13%), Positives = 193/689 (28%), Gaps = 141/689 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSD 56 + D ET S + A + ++A+++ + + Sbjct: 329 IVSFDTET-SDLDVK---------NAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEA 378 Query: 57 LLQYLRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKN-A 112 + V N ++ + K I++ + T +L+ L Sbjct: 379 AKNAIIQLNRYKLVLQNFKYDYEIIKNNFDIELRL--YADTMILSWLLNTNEKVGLDYQI 436 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATR 171 + K + + A + K+ ++ + Sbjct: 437 DKYFDHKMISFTDVVKKG------ENFSNVDIERACEYAAEDALMTLRLFKKQLEIFKEK 490 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E + L + E D + + G ++D++L+ + +EL + +L I + + Sbjct: 491 EEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGAE 550 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ ++ T +++L+ L+L + Sbjct: 551 F-NINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYREAYKLQ 609 Query: 289 ILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L E S D R+ + G + TGR S QN+P + S Sbjct: 610 STYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDSNIQ------- 661 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I +G KLV D + IE R+LA + + ++AF N Sbjct: 662 -----------------IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDL 704 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T K F ++ +KE+R I K + L Y G+K L + Sbjct: 705 DIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGET-----LGIPSKEAKQ 756 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 S FE ++ + + ++D L+ + Sbjct: 757 YIDSYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRL---------------FDFNSAN 801 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 +++ L + Y ++ Sbjct: 802 AMMKAAYLREAVNT---------------------LFQGSAADLIKLAMINIYQKYKDNE 840 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG- 645 + + +V E D + Sbjct: 841 N----------------------IKL-LLQIHDE-----------LVFEVKDEFVEEITF 866 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 ++ ++M + +PLK ++ Sbjct: 867 SIKNIMENI--YKLNVPLKVSLSVGSSWK 893 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 92/606 (15%), Positives = 163/606 (26%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ +LA ++ + Sbjct: 357 DLAVLALREGLDLAPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E K L + E+ L + + Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249 G R+D+ + L +A+E ++L+E++ +L + L LF Sbjct: 447 EATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 G T ++L + IL + ++ L V GRL Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + +R Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 M L VHDE++ E P V L M K A +PL+ E Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823 Query: 668 YEAKRY 673 + + Sbjct: 824 GIGEDW 829 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 92/606 (15%), Positives = 164/606 (27%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ +LA ++ + Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E K L + E+ L + + Sbjct: 398 ----------GEWTEDAAHRALLSERLHQNLLKRLQGE-EKLLWLYHEVEKPLSRVLAHM 446 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249 G R+D+ + L +A+E ++L+E++ +L + L LF Sbjct: 447 EATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 G T ++L + IL + ++ L V GRL Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + + F+ + + + ++ Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LSIPYEEASAFIERYFQSFPKVRAWIEKTLEE 715 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + +R Sbjct: 763 -----------------MKLAMVKLFPRLRQMG------------------------AR- 780 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 M L VHDE++ E P V L M K A +PL+ E Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEA 823 Query: 668 YEAKRY 673 + + Sbjct: 824 GIGEDW 829 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 131/354 (37%), Positives = 196/354 (55%), Gaps = 5/354 (1%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L+ D+ET P+ G AYAE + L A+A DEPV +WD T +PS L + + Sbjct: 5 ILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIA 63 Query: 63 DETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D + HNS F+R + + + + P +RW T V A + LP +L C L + Sbjct: 64 DPDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQD 123 Query: 122 LTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K +EGK+LI FCK +S T H WQ F Y D+EA RE++KRL Sbjct: 124 KAKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKW 183 Query: 181 SDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E LW DQ INDRG+ +D+DLV + + +K+L E V++T+G ++++ Q Sbjct: 184 NYQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQR 243 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 A+ ++ G++L DM + T++ ++ ++ K+L+ RL +S ++ K TL ++ Sbjct: 244 DAMIKHIVESYGVELPDMQKSTIERRIADPDLPPAVKELLHIRLQASATSTSKYKTLLKS 303 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 VSSDGRLRGTLQF GASRTGRW+G +FQPQNL R+ S E + I+ + Sbjct: 304 VSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKADCE 357 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 90/664 (13%), Positives = 181/664 (27%), Gaps = 139/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I A ++ + + D ++ + K GI+ Sbjct: 331 ADIQGIAL-VNETGNYFIPTEVALQ-SEEFAAFASDHKRKKTVFDAKRAIVALKW-KGIE 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFCKGSID 141 + + + + + + + GK Sbjct: 388 LNGIDF-DFIIASYIVNPSETSTDLAEIARKKGYYQIETD--EAVYGKGAKR-------- 436 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + P A+H+ + K + ++L + E L L+ + G ++ Sbjct: 437 AVPDQQKVADHLVRKTFAMQEMKESFIHELKDNEQLELFEELEMPLTLVLGEMEALGIKV 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + ++ + ++ +K++E I L + L + LF G+ V ++ Sbjct: 497 DKARLEEMGTDLGEKLEKIEEKIFDLAGEKF-NINSPKQLGVILFEKLGLPPVKKTKTGY 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRT 317 T +L IL+ + L + + D ++ ++T Sbjct: 556 STSADVLEKLAEKHEVIQQILHYRQLGKLKSTYIEGLLKVIHEDSNKIHTRFNQA-LTQT 614 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S QN+P +R I + Sbjct: 615 GRLSSIDPNLQNIP------------------------VRLEEGRKIREAFIPSHEDWVI 650 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 AD + IE RVLA IA ++ I+AF DI+ T F+ D+V+ R K + Sbjct: 651 FAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVN 710 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ SQ++ Sbjct: 711 F--------------GIVYGISDYGLSQSL------------------------------ 726 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + GV + +D + R +P + Sbjct: 727 GITRKDAKTFIDRYLESFPGVKEYMEDSVLDAKDKGYV--TTLLHRRRYLPEITSSNFNL 784 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + + +NT +Q + DI+ + M + Sbjct: 785 ---------------RSFAERTAMNT------------------PIQGSAADIIKKAMID 811 Query: 617 A------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 ++L VHDE+V E P + + +M + +PLK + Sbjct: 812 MANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQAVE--LKVPLKVDYSY 869 Query: 670 AKRY 673 + Sbjct: 870 GSTW 873 >gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO] gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO] Length = 868 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 84/656 (12%), Positives = 193/656 (29%), Gaps = 124/656 (18%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 322 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 377 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 378 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 436 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A K E + + L E L ++ + G ++D Sbjct: 437 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 489 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 490 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 548 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 549 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 607 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 608 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 643 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 644 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 703 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 704 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 758 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 759 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 805 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 806 -------------------------------------RLKETGLQAT------------- 815 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P+ S+ L +M + S +PL + K + Sbjct: 816 -----MLLQVHDELVFEVPEKELESLDKLVKEVMEQAVS--LHVPLITDSSWGKTW 864 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 87/629 (13%), Positives = 189/629 (30%), Gaps = 122/629 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNA 112 +L + + ++ N + ++FK+ LG+ + + + A ++ L Sbjct: 372 ELRAVIENPAIIKNVFNVKAQLVMFKR-LGLALQGVDF-DFLLAAYLLDTTANDNELSTL 429 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + GK + + +A+ + + D Sbjct: 430 AQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLGQKADALMQLETPTLAALTD------ 483 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +D E L + + RG I+ + ++ + + +++ I L G Sbjct: 484 -HEQMHLYTDIELPLAHVLADMEYRGIAINQARLAEIGTDLTGRIQAIEDAIY-LEAGEK 541 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ T +L D +L + Sbjct: 542 FNINSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVLEKLAHQAPIVDYVLQYRQLAKLKS 601 Query: 290 LKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L V+ D ++ ++TGR S QN+P Sbjct: 602 TYVDGLLAVVNQKDSKIHTRFLQT-LTQTGRLSSVDPNLQNIP----------------- 643 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R+ + S ++ AD + IE RVLA + G+ +AF NGED Sbjct: 644 -------MRSDEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLNGED 696 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 I+ T F V+ QR K + + Y L + + Sbjct: 697 IHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYG-----ISDFGLANNLGISRAQAKQ 751 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + F+++ + ++ + + R + +L Sbjct: 752 FIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAKR---------RRYLPDIHAKNFNLRS 802 Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + SA + + + + Sbjct: 803 FAERTAMNSPIQGSAADIIKIAMIKV---------------------------------- 828 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 L EN +QA ++L VHDE++ E P + ++ Sbjct: 829 --------ADALAENNMQA------------------RMLLQVHDELIFEAPTSEIPALT 862 Query: 646 TLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L +M + +P++ E + K + Sbjct: 863 ALVTKVMDSAVT--LDVPMQVESHYGKTW 889 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 96/648 (14%), Positives = 180/648 (27%), Gaps = 149/648 (22%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICT 96 D+ T + ++L+ + + +++ L ++ K Sbjct: 335 DQESNTVFITSNKLLIEEILK----SDTVKI----MYDLKNIFHQLNLEDTNNIKNCEDV 386 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + S L S T +E K K + ++ Sbjct: 387 MIASYVLDSTRSSYEL-ETLFVSYLNTDIEAVKK-----DKKIVSVVLLKRLWDELLRLI 440 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 L ER L + + G+++D D +++ + I + Sbjct: 441 D---------------LNSCQFLYESIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENK 485 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 KL+ I ++ G + L LF + ++ ++ T +L Sbjct: 486 ILKLETQIYQIA-GEWFNINSPKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHE 544 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LIL+ + L +A++ GR+ T G + TGR + QN+P Sbjct: 545 IVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIP- 602 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE R+LA I Sbjct: 603 -----------------------VKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHI 639 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ I AF N DI+ T A+ F I V+ E R+ K + + Sbjct: 640 SEDERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIV------------ 687 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ A K+ + Sbjct: 688 --YGISDY------------------------------GLARDIKISRKEAAEFINKYFE 715 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ V + + + ++ +R+ D Sbjct: 716 RYPKVKEYLDNTVKFARDNG--------------------------FVLTLFNRKRYIKD 749 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVL 626 +K L R + +Q DI+ M + I+L Sbjct: 750 IKSTNRNLRGYA---ERIAM------NSPIQGSPADIMKLAMIKVYQKLKENNLKSKIIL 800 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P V + M +PL E E + Sbjct: 801 QVHDELLIEAPYEEKDIVKEIVKREMENAVR--LKVPLVVEVKEGLNW 846 >gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3] gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6] gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG] gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3] gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6] gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG] gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137] gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62] gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF] Length = 882 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 92/656 (14%), Positives = 190/656 (28%), Gaps = 126/656 (19%) Query: 30 ITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A+ +D+ + + + P + +L DET +++ + + +G + Sbjct: 337 IVGLAWG-NDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KM 392 Query: 89 PSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPP 144 + + A + ++ + + GK + Sbjct: 393 TGIAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFG 451 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + + +Q K D E T + L E L + + G R+D Sbjct: 452 HLARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDAT 504 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 505 RLKEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTA 563 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L IL + + L + + D ++ ++TGR S Sbjct: 564 VDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLS 622 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380 QN+P +R + + +D Sbjct: 623 SVDPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSD 658 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Sbjct: 659 YSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGI 718 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + + + FE + + + + + + L Sbjct: 719 VYG-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLY 773 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDV 558 R + +L + SA + + + M Sbjct: 774 HR---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA------ 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RRL + QA Sbjct: 819 -------RRLKEEKL-----------------------------QAT------------- 829 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ + L +M S +PL + K + Sbjct: 830 -----MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 96/654 (14%), Positives = 200/654 (30%), Gaps = 139/654 (21%) Query: 35 YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85 Y D+EPV T + + + + F+ G Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383 Query: 86 IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141 IDI + ++ S++ + + + + GK + S + Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + +L+ + + + E L++ D E L + + G + Sbjct: 443 KEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + ++++ EL E K +++ + +L G + + L LF + ++ ++ Sbjct: 497 KKETLVEMGELFEDEIKSIEKSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T + +L + D IL + ++ + + + DG++ T Q A +TG Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R + S G L+ Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSEGNMLLD 650 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA +A ++ + AF +G DI+ T ++ F DKV+ QR+ K + Sbjct: 651 ADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G + Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + ++G+ Q +D+ ++ Sbjct: 727 TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMN------------------- 767 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR ++K + + ++ +Q + DI+ M Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 K ++L VHDE++ + P V + +MT + + Sbjct: 812 NRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 >gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol] gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol] Length = 882 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 92/656 (14%), Positives = 190/656 (28%), Gaps = 126/656 (19%) Query: 30 ITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A+ +D+ + + + P + +L DET +++ + + +G + Sbjct: 337 IVGLAWG-NDKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KM 392 Query: 89 PSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPP 144 + + A + ++ + + GK + Sbjct: 393 TGIAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFG 451 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + + +Q K D E T + L E L + + G R+D Sbjct: 452 HLARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDAT 504 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 505 RLKEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTA 563 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L IL + + L + + D ++ ++TGR S Sbjct: 564 VDVLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLS 622 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380 QN+P +R + + +D Sbjct: 623 SVDPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSD 658 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Sbjct: 659 YSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGI 718 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + + + FE + + + + + + L Sbjct: 719 VYG-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLY 773 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDV 558 R + +L + SA + + + M Sbjct: 774 HR---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA------ 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RRL + QA Sbjct: 819 -------RRLKEEKL-----------------------------QAT------------- 829 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ + L +M S +PL + K + Sbjct: 830 -----MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 96/685 (14%), Positives = 192/685 (28%), Gaps = 127/685 (18%) Query: 5 FIDIETRSP----QPLPKVGVWAYAEQAV-----ITLCAYAWDDEPVKLWDRTEQSAMPS 55 D+ET + L + E I DD + E S Sbjct: 314 TFDVETDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDD--THIVINAEDIKQHS 371 Query: 56 DLLQYLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 DL+++L D + +++ + + L I+I + ++ + + ++ + Sbjct: 372 DLIEWLEDAQTVKTVYDAKKTY---VAAHRLDINIQNVQF-DVMLASYIIDPSRAIDDVK 427 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 ++ K ++ + KG P D HV + K +E + Sbjct: 428 SVVSLYGQNY----VKDNVSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLMEEQLKE 483 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + ++ L+D E L + + + G D++ + ++ I ++ L ++I + Sbjct: 484 YNQVELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGEEF- 542 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ T +L + IL S Sbjct: 543 NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLKGEHPIIEHILEYRQLSKLQST 602 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + +S D R+ A +TGR S QN+P Sbjct: 603 YVEGLQKVISKDNRIHTRFNQTLA-QTGRLSSVDPNLQNIP------------------- 642 Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R S ++ AD + IE RVLA I ++ +AF +G DI+ Sbjct: 643 -----IRLEEGRKIRKAFKPTSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIH 697 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T K FN + V R K + + Y L + + Sbjct: 698 TATAMKVFNVEANDVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFID 752 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + L+ R + +L Sbjct: 753 DYLASFPGVKQYMSDIVKDAKAQGYVETLLHR---------RRYIPDITSRNFNLRSFAE 803 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + +L N Sbjct: 804 RTAMNTPIQGSAADII---------------------KLAMVKFNEKVKNTNYHAK---- 838 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LC 648 ++L VHDE++ E P + + Sbjct: 839 ----------------------------------LLLQVHDELIFELPKSEVEDFSEFVE 864 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 865 EIMENALD--LDVPLKVDSSYGPTW 887 >gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583] gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1] gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2] gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1] gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11] gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98] gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712] gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613] gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583] gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1] gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2] gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1] gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11] gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98] gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712] gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613] gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76] gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017] gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027] gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141] gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244] gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012] gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031] gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043] gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312] gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341] gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467] Length = 882 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%) Query: 33 CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 AW + + + P + +L DET +++ + + +G + Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394 Query: 91 KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146 + + A + ++ + + GK + + Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +Q K D E T + L E L + + G R+D + Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + L + + D ++ ++TGR S Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382 QN+P +R + + +D + Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441 IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Y Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 720 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + + FE + + + + + + L Sbjct: 721 G-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + +L + SA + + + M Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 818 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RRL + QA Sbjct: 819 -----RRLKEEKL-----------------------------QAT--------------- 829 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ + L +M S +PL + K + Sbjct: 830 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 866 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 87/641 (13%), Positives = 163/641 (25%), Gaps = 135/641 (21%) Query: 40 EPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 E V + L + HN+ F + GI++ T + Sbjct: 350 ERVYQLKLEAGDDYKLQWIKALLESAVIKKYLHNAKF-IQVLLLRHGIELRGVA-GDTML 407 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 LA + K + + Sbjct: 408 LAYVDDPAFEGDEL------------DACLKKHLQLNI----------AENNLAALVNTI 445 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 Y + + + EL + L + E + + + G +++ + ++ E +A Sbjct: 446 RELYFQLEGQIPAELRELLQ---EVEMPMSEVLARMEFCGVKVERSTLARISEELASGIA 502 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLKSILSHSNITQLAK 275 +E I +L G + L LF G+ T +L Sbjct: 503 GHEERIFELA-GSSFNINSPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEII 561 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ILN S + L E + GR+ + + TGR S QN+P Sbjct: 562 AHILNYRQLSKIKSTYADALQELIHPETGRVHTIFKQAQ-TATGRLSSVEPNLQNIP--- 617 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393 +R +A ++ AD + I+ R LA I+ Sbjct: 618 ---------------------IRMEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHIS 656 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G++ I+ F +G DI+ T + F+ P++ V E R K + + Y Sbjct: 657 GDERLIETFKSGVDIHTRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYG-----ISDFGL 711 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + + + + + + + L+ R Sbjct: 712 ARDTGVSRKEARKYIDNYLNSYPGVKKYMEDIVEFGRRHGYVETLLKR---------RRY 762 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + K + + +L V Sbjct: 763 LPELNARNKMVQAFGRRMALNTPVQGTSADII---------------------KLAMIKV 801 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + ++L VHDE++ Sbjct: 802 DEEIRKRR--------------------------------------LQARLLLQVHDELL 823 Query: 634 SETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E P T V L M S +PL+ + Sbjct: 824 LELPRTELEEVSGLLRDCMENACS--LKVPLEVSLKTGPNW 862 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 91/663 (13%), Positives = 174/663 (26%), Gaps = 147/663 (22%) Query: 28 AVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 +TL A W + + L DET+ V +N+ + K G Sbjct: 338 PAVTLIGLAIWAGDEAVYIPHNVNGWEL--VWDLLADETIPKVTYNAK-DVCNACKAKGT 394 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ + + A ++ Sbjct: 395 ELRGLCF-DIQLAAYLLEPTAA------------------------KYPLTELACQHLGL 429 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIND 196 + +Y E + L+ L + E L + + Sbjct: 430 AVGDMDKEHLGT-PDYAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEI 488 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G R+DL + L + I + L +I +L + T L LF + + ++ Sbjct: 489 AGIRVDLTQLDALAQEITDRIETLLTEIYQLAGQEF-NVNSTRQLGHILFEVLKLPVIKK 547 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFY 312 ++ T +L D +L + L+ L + + +D GR+ Sbjct: 548 TKTGYSTDAEVLEKLAGQHPLIDCLLEYRLLTKLKSTYLDGLRDLIRADTGRIHTHFNQT 607 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P +R + Sbjct: 608 V-TATGRLSSSEPNLQNIP------------------------IRTEIGRRIRELFVPGP 642 Query: 373 GKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + AD + IE RVLA ++G+D I AF + +DI+ T A+ F P+ +V+ + RA Sbjct: 643 GYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRAR 702 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y + + + S F + +++ + + + Sbjct: 703 AKAVNFGIVYG-----ISDFGLSRDIGVSRKEAGQYIDSYFAKYRGVKNYIDNVINLARQ 757 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 L G R + + ++ Sbjct: 758 QGYVTTLFGR---------RRFLPDINSGNFNQRAFAERTAMNTPIQGTAADIIKKAMIT 808 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 R+L +K Sbjct: 809 VY------------RQLRDRRLKSRL---------------------------------- 822 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670 + +V E + V L M + A +PL A+ Sbjct: 823 --LLQVHDE-----------LVLEVAEAERVLVAQLVKQAMEDAVTLA--VPLVADVKTG 867 Query: 671 KRY 673 + Sbjct: 868 ANW 870 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 97/663 (14%), Positives = 183/663 (27%), Gaps = 168/663 (25%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-- 78 Y A I D + L D +L D + +S E Sbjct: 356 PELYFSSAEIL------ADNKIYLLDAQSG--CWDKFDSWLSDAGSKKITIDSK-ELYKC 406 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARF 135 + + + ++ S L++ Sbjct: 407 CLCR--KVKVQGI-VDDVALAGYVADPGHSSYSLEDLSRR-------------------- 443 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + P T ++ + +L++ + E L + + Sbjct: 444 -----NLPGVLATPCENLLQLAS-KLRSLLAEQQQLKLYE------EFELPLAPVLAQME 491 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G D +L+L+L E + KL+ + + + L + LF + ++ Sbjct: 492 FAGITPDKELLLQLNEDMGHRIAKLEALAQEQAGEEF-NLKSPKQLGVILFERLQLPVIK 550 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQF 311 ++ T +L IL + L L ++ GR+ Q Sbjct: 551 KTKTGYSTDAKVLEALEGKHPLIATILEHRKLAKLQSTYLEGLQPLINPKTGRIHTHFQQ 610 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P S +R + Sbjct: 611 TV-TVTGRLSSTDPNLQNIP------------------------ARTEESRQIRRIFVPG 645 Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L+ D + +E R+LA IA ++ ++AF +G+DI+ T A+ F P+D+V+ + R+ Sbjct: 646 AGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRS 705 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + Y LD+ Sbjct: 706 RAKAVNFGIVYG-----ISDFGLAKQLDVG------------------------------ 730 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 ++ ++ GV + +D+ Sbjct: 731 ---------RKEAAGYIASYFERYTGVKKYMEDIVAEAREQGY----------------- 764 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + RR +++ L + R +Q + DI+ Sbjct: 765 ---------VSTLMGRRRYLPEIRSSNFNLRSFA---ERTAI------NTPIQGTAADIM 806 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPL 663 + M + I+L VHDE+V E + V L M S +PL Sbjct: 807 KKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAAS--LDIPL 864 Query: 664 KAE 666 A+ Sbjct: 865 LAD 867 >gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8] gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8] gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000] Length = 882 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 88/628 (14%), Positives = 180/628 (28%), Gaps = 122/628 (19%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113 + +L DET +++ + + +G + + + A + ++ Sbjct: 362 FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTGIAF-DVLLAAYLLDTNDNNADIEGVA 419 Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + GK + + + +Q K D E T + Sbjct: 420 QHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT-----SKLDSELTEK 474 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L E L + + G R+D + ++Q ++ K+++E I Sbjct: 475 NQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF 532 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ T +L IL + Sbjct: 533 -NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQS 591 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P Sbjct: 592 TYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSVDPNLQNIP------------------ 632 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + + +D + IE RVLA I+ ++ +AF G+DI Sbjct: 633 ------IRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + +T + F + V+ R K + + Y L + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNLGITRKQAQQY 741 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + FE + + + + + + L R + +L Sbjct: 742 IDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR---------RRYLSDINSRNFNLRSF 792 Query: 528 FAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + SA + + + M RRL + Sbjct: 793 AERTAINTPIQGSAADILKIAMIEMA-------------RRLKEEKL------------- 826 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 QA ++L VHDE+V E P++ + Sbjct: 827 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 852 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L +M S +PL + K + Sbjct: 853 LVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 91/635 (14%), Positives = 178/635 (28%), Gaps = 136/635 (21%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC 113 +++ L + N+ E I+ LG+ I + + +++ + L Sbjct: 391 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDF-DFLLVSYLLDTTDNDNQLATLA 448 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW---QLFGEYCKRDVEAT 170 N G + + + + + +A+ + + + E Sbjct: 449 NRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDHQQAELY 508 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R++ E L + ++ G ++D + KL + Q +L++ I + Sbjct: 509 RQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQ 558 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF I + ++ T ++L LIL + Sbjct: 559 EF-NINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 617 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L E V+ D T ++TGR S QN+P Sbjct: 618 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP---------------- 661 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + G ++ +D + IE RVLA + G++ KAF +GE Sbjct: 662 --------DRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGE 713 Query: 407 DIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T F D+ + +QR K + G+ +Q Sbjct: 714 DIHAATARSIFGLSTDQKITFDQRRRAKAVN--------------FGIVYGISDFGLAQR 759 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + + V + Sbjct: 760 ------------------------------LGTSRIEGKEIIQTYFHEFPKVKNWIDSII 789 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RR D+ L + Sbjct: 790 ALAHKQGYVETIAQ--------------------------RRRYLPDIHSKNFNLRSFA- 822 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639 R T +Q + DI+ M + ++L VHDE++ E P Sbjct: 823 --ERTAT------NTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQ 874 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PL+ E + + Sbjct: 875 EIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 907 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 87/673 (12%), Positives = 183/673 (27%), Gaps = 160/673 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83 + A+ + ++ + ++L + + V ++ + Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLENTA-LKV-----YDFKRSKVLLSR 386 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 LGI++ + +R L + ++ L + ++ Sbjct: 387 LGIELSRPAFD-----SR----------LAKYLLSTVDNNEIVTIAGLYGKTKLAEDEAV 431 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTI 194 + + L ++ +L L + E+ L + + Sbjct: 432 YGKGAKRALPEKAILLSHLARKVTVLIETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G +++ + + +Q + +L ++I L + L LF G+ Sbjct: 492 EIAGIKVERETLQTMQAENERILTRLTQEIYDLAGEEF-NINSPKQLGGILFEKLGLPTS 550 Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 T +L + IL+ + + L + + +DG++ Sbjct: 551 FTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 611 LQ-DLTQTGRLSSVDPNLQNIP------------------------IRLEQGRLIRKAFV 645 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G+ I+AF +G DI+ +T + FN + V+ Sbjct: 646 PEWEDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPN 705 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y L Sbjct: 706 DRRNAKAVNFGVVYG-----ISDFGLANNL------------------------------ 730 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + ++ G+ +++ RR Sbjct: 731 ---------GISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYVETLFHRRREIPDI 781 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + R + +Q + Sbjct: 782 NSRNFNVRGF-----------------------------AERTAI------NSPIQGSAA 806 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG 660 DIL M + ++L VHDEIV E P+ ++ L +M Sbjct: 807 DILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVKDIMESAIE--LS 864 Query: 661 LPLKAEGYEAKRY 673 +PLKA+ K + Sbjct: 865 VPLKADESAGKTW 877 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 105/687 (15%), Positives = 181/687 (26%), Gaps = 144/687 (20%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFE 76 V +T A A D D L +L D VAH+ Sbjct: 355 HVTGEWSRGSGEVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHDVKGP 414 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEG----- 128 G + + T++ A L + + E + G Sbjct: 415 SHALL-ARGWTLAGV-VLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGADAD 472 Query: 129 -KALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + +A + E RL L + E Sbjct: 473 VDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRL--LHEVELP 530 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + G +D +L+ L+ A+ + ++ I + L+ LF Sbjct: 531 LVAVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEI-NLGSPKQLQTVLF 589 Query: 247 LITGIDLVDMSEG---TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 + ++ T L+ L+ +R AS + L ++V+ Sbjct: 590 EQLDMPKTKRTKTGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQT--VEGLRKSVA 647 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T Q A TGR S QN+P Sbjct: 648 DDGRIHTTYQQMIA-ATGRLSSTDPNLQNIP------------------------IRTEE 682 Query: 361 SDCVRSCII------ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + A +G L+ AD + IE R++A ++G++ I AF +GED++ Sbjct: 683 GRRIREAFVVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVG 742 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F V+ E RA K M L Y Sbjct: 743 SRVFGVAPVDVTPEMRAKIKAMSYGLAYG-----LSAFGLSNQ----------------- 780 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 K+ + + + + GV + E Sbjct: 781 ----------------------LKISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGW 818 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + RR D+ D ++ Sbjct: 819 TETIM--------------------------GRRRYLPDLASDNRQRREMAERM------ 846 Query: 594 GGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + ++L VHDE+V E + L Sbjct: 847 ---ALNAPIQGSAADIIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEEL 903 Query: 648 CS-LMTKNPSWAKGLPLKAEGYEAKRY 673 M A +PL + + Sbjct: 904 VRATMAGAADLA--VPLDVSVGVGRSW 928 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 104/661 (15%), Positives = 182/661 (27%), Gaps = 147/661 (22%) Query: 44 LWDRTEQS--------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWI 94 + A+P L L D V VAH + + L +D P + Sbjct: 382 YLPLAHRYLGVPAQWSALPEALRALLADPAVEIVAH----DVKSLARLLRTLDAPLAGVL 437 Query: 95 -CTSVLARTNGLPSSL---KNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T + A G L A A+ + + G++ I + Sbjct: 438 GDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIGFEAVDISAAAMRAGG 497 Query: 149 RANHVQA-WQLFGEYC-KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A V A W GE + +L + L L I + G +D+ + Sbjct: 498 AAAAVLASWPRLGEQLEHAGGDGALR---KLHDELELPLALLL--AEIEEHGITLDVPYL 552 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD------MSEGT 260 L + + + ++ + +L + L LF G+ S T Sbjct: 553 RALADELGGQLAGIERQVYELAGEEF-NLGSPKQLGHMLFEKLGLRADKMRRTKTGSYST 611 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 IL + I+ L+ L V+ GR+ + A TGR Sbjct: 612 NHEILESMAESHAIIPPIIEHRELLKLKGTYLDALPPLVNPHTGRIHTSFNQAVA-ATGR 670 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +R +A+ GK LV Sbjct: 671 LSSQDPNLQNIP------------------------IRKDIGRRIRRAFVAAPGKTLVSI 706 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RV+A ++G++ ++AF N D++ T A+ F+ P +++ ++ Sbjct: 707 DYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDE----------- 755 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 +A ++ L A + Sbjct: 756 ---------------------------------RRVAKAVNYGLMYGQSEFGLAQSLGIS 782 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + + V + + Sbjct: 783 RAQAAHYMERYFERFSTVRAYMDQVVADARAEGAAVTLL--------------------- 821 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ R VQ + DI+ M Sbjct: 822 -----GRRRPIPDLDARNQ---QRRRAAERVAQ------NTPVQGSAADIIKLAMLRVAA 867 Query: 620 NGYD------IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++LTVHDE+V E + + + M +A +PL A A Sbjct: 868 HLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEGA--YALDVPLVASAGIADN 925 Query: 673 Y 673 + Sbjct: 926 W 926 >gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342] Length = 882 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%) Query: 33 CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 AW + + + P + +L DET +++ + + +G + Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394 Query: 91 KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146 + + A + ++ + + GK + + Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +Q K D E T + L E L + + G R+D + Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + L + + D ++ ++TGR S Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382 QN+P +R + + +D + Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441 IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Y Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 720 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + + FE + + + + + + L Sbjct: 721 G-----ISDYGLSPKLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + +L + SA + + + M Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 818 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RRL + QA Sbjct: 819 -----RRLKEEKL-----------------------------QAT--------------- 829 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ + L +M S +PL + K + Sbjct: 830 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302] Length = 882 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%) Query: 33 CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 AW + + + P + +L DET +++ + + +G + Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394 Query: 91 KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146 + + A + ++ + + GK + + Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +Q K D E T + L E L + + G R+D + Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + L + + D ++ ++TGR S Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382 QN+P +R + + +D + Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441 IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Y Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVY 720 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + + FE + + + + + + L Sbjct: 721 G-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + +L + SA + + + M Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 818 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RRL + QA Sbjct: 819 -----RRLKEEKL-----------------------------QAT--------------- 829 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ + L +M S +PL + K + Sbjct: 830 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 89/666 (13%), Positives = 176/666 (26%), Gaps = 151/666 (22%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRD-----ETVMCVAHNSLFER 77 +A+ A I ++DDE + + S L + + + +TV N Sbjct: 337 FADAAEINHIGVSFDDEKIYTIY--TGEEITFSYLKKKIEELTACVKTVSIC--NIKEAL 392 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 + + P A + + L Sbjct: 393 KWITFA-----NETSAFDPIIASYLLN-PLKSDYA----------FEDVAREQLNILIDD 436 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 ++ T + + + L +D E L + Sbjct: 437 KMEEARKSCYTAYTA------YKSVFFLSDRLKEKKMEHLF--TDIEMPLAFTLFDMEQA 488 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++ + + + + + +L+ +I ++ G + L + LF + + Sbjct: 489 GVKVKAEELKVYGQQLGGKINELETEIYEIA-GETFNINSPKQLGVVLFEHLNLPNGKKT 547 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L IL + + L+ + DGR+ G Sbjct: 548 KTGYSTAADVLEKLAPDYPIVSKILEYRQLAKLKSTYADGLANFIQEDGRIHGKFNQTV- 606 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P +R + Sbjct: 607 TATGRISSTEPNLQNIP------------------------VRMELGRLIRKVFVPEEDY 642 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 V AD + IE R+LA +G++ I A+ DI+ T ++ F+ P D+V+ +R K Sbjct: 643 VFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQVFHIPFDEVTDLERRNAKA 702 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + G+ SQ++ Sbjct: 703 VNFGIV--------------YGISSFGLSQDLS--------------------------- 721 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + G+ D RR Sbjct: 722 ---ITRKEAGEYIDNYFKTYPGIKTFLDDTVAHAKEQGYVVTLFGRRRPVP--------- 769 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 L S + G+ + +Q + DI+ M Sbjct: 770 ------ELESGNFM--QRSFGERVAM------------------NAPIQGTAADIMKIAM 803 Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +VL VHDE++ E V ++ M + S +PL + Sbjct: 804 IGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEAAS--LSVPLDIDM 861 Query: 668 YEAKRY 673 + + Sbjct: 862 HTGNSW 867 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 200/654 (30%), Gaps = 139/654 (21%) Query: 35 YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85 Y D+EPV T + + + + F+ G Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383 Query: 86 IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141 IDI + ++ S++ + + + + GK + S + Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + +L+ + + + E L++ D E L + + G + Sbjct: 443 KEIDNYVVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + ++++ EL E K +++ + +L G + + L LF + ++ ++ Sbjct: 497 KKETLVEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T + +L + D IL + ++ + + + DG++ T Q A +TG Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKEDGKIHTTFQQTIA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R + S G L+ Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSEGNMLLD 650 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA +A ++ I AF +G DI+ T ++ F DKV+ QR+ K + Sbjct: 651 ADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G + Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + ++G+ Q +D+ ++ Sbjct: 727 TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMN------------------- 767 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR ++K + + ++ +Q + DI+ M Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 K ++L VHDE++ + P V + +MT + + Sbjct: 812 NRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 91/585 (15%), Positives = 166/585 (28%), Gaps = 125/585 (21%) Query: 98 VLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + A + L + + P D Sbjct: 582 LAAYLLDPVRNRYYLVDVARQF---------------FGWELEEGPADRPDDPACRTTQL 626 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + + EL R + + E L + + + G +D + +L L Sbjct: 627 LGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRL 686 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 + ++L E I +L G + T L LF G+ +V ++ T +L Sbjct: 687 FTRRSQELAEQIYQLA-GETFNINSTQQLGQILFERLGLPVVKKTKTGYSTDAEVLETLA 745 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L+L + ++ L+E + DGR+ T Q A TGR S QN Sbjct: 746 ARHPIAELVLEYRSLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVA-ATGRLSSTQPNLQN 804 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R +A G +LV AD + IE RVL Sbjct: 805 IP------------------------IRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVL 840 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A +G++ ++AFA G+D++ T ++ F P+++V+ EQR + K + L Y Sbjct: 841 AHYSGDEGLLEAFARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQT----- 895 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 L + + FE + + + + + L+G + Sbjct: 896 DYGLARALRIDRADARRFMDRYFERYPGVKRYMEETIRRARQHGEVTTLLGRRRPV---- 951 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + + V +L Sbjct: 952 -----PEIRHRVYHIRQNAERVAINTPIQGTAADI---------------------MKLA 985 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 V + +R R Sbjct: 986 MIRVYRALAGEG------LRARIV---------------------LQVHD---------- 1008 Query: 630 DEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P+ +V L M A +PL + + Sbjct: 1009 -ELLVEAPEDEVPAVAALLRREMEGAFPLA--VPLVVDVKAGTNW 1050 >gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] Length = 848 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 91/654 (13%), Positives = 186/654 (28%), Gaps = 126/654 (19%) Query: 33 CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 AW + + + P + +L DET +++ + + +G + Sbjct: 304 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 360 Query: 91 KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146 + + A + ++ + + GK + + Sbjct: 361 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 419 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +Q K D E T + L E L + + G R+D + Sbjct: 420 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 472 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 473 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 531 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + L + + D ++ ++TGR S Sbjct: 532 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 590 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382 QN+P +R + + +D + Sbjct: 591 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 626 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441 IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Y Sbjct: 627 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 686 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + + FE + + + + + + L Sbjct: 687 G-----ISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 741 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + +L + SA + + + M Sbjct: 742 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------- 784 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RRL + QA Sbjct: 785 -----RRLKEEKL-----------------------------QAT--------------- 795 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E P++ + L +M S +PL + K + Sbjct: 796 ---MLLQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 844 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 87/654 (13%), Positives = 191/654 (29%), Gaps = 155/654 (23%) Query: 40 EPVKLWDR-----TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW- 93 E V + + + L +E + V H+S ++ KK +I +K Sbjct: 356 EEVFVISANEIKDKDGAKYFEILKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIA 412 Query: 94 ICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T + A S LK+ + K + K + D ++ Sbjct: 413 FDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKDDDNI-KINETYYIKDVYEKLEKDIKKS 471 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 N + E L + ++ G+R+D + + ++ Sbjct: 472 NMEELLYTV------------------------ELPLIEVLASMECEGFRVDENRLTEIG 507 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 E +E + L+++I +L D + + L LF + ++ ++ T +L Sbjct: 508 EKFKKEIETLEKEIHELADEEF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEK 566 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + + I+ + + L + D ++ + + TGR S Sbjct: 567 LKDSHPIIEKIIEYRQITKLDSTYVEGLKNVIDEDAKIHSSFNQTV-TTTGRLSSTEPNL 625 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386 QN+P +R + + + + AD + IE Sbjct: 626 QNIP------------------------IKHEMGREIRKVFVPNNDESVIFSADYSQIEL 661 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+L+ IA ++ I AF + +DI+ T ++ F PID+V+ R+ K + + Sbjct: 662 RILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV------ 715 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ + + + Sbjct: 716 --------YGIG------------------------------AFSLSKDINVSRKEAKEY 737 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + +++ V + ++ D + +R Sbjct: 738 IDTYFSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNR 771 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 + +++ + +L +Q + DI+ M Sbjct: 772 KRYIPEIQSRNKIVRGFGERL---------AMNTPIQGSAADIIKLAMVEVYNELKNRNL 822 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ V + M +PL+A+ + + Sbjct: 823 KSTLILQVHDELILNVYKDELEEVKEMVVDKMENVMKLL--VPLEADVNVGETW 874 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 91/635 (14%), Positives = 178/635 (28%), Gaps = 136/635 (21%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC 113 +++ L + N+ E I+ LG+ I + + +++ + L Sbjct: 383 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDF-DFLLVSYLLDTTDNDNQLATLA 440 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW---QLFGEYCKRDVEAT 170 N G + + + + + +A+ + + + E Sbjct: 441 NRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSDHQQAELY 500 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R++ E L + ++ G ++D + KL + Q +L++ I + Sbjct: 501 RQI----------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQ 550 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF I + ++ T ++L LIL + Sbjct: 551 EF-NINSPKQLADLLFAHMKIPPIKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 609 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L E V+ D T ++TGR S QN+P Sbjct: 610 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP---------------- 653 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + G ++ +D + IE RVLA + G++ KAF +GE Sbjct: 654 --------DRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGE 705 Query: 407 DIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T F D+ + +QR K + G+ +Q Sbjct: 706 DIHAATARSIFGLSTDQKITFDQRRRAKAVN--------------FGIVYGISDFGLAQR 751 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + + V + Sbjct: 752 ------------------------------LGTSRIEGKEIIQTYFHEFPKVKNWIDSII 781 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RR D+ L + Sbjct: 782 ALAHKQGYVETIAQ--------------------------RRRYLPDIHSKNFNLRSFA- 814 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639 R T +Q + DI+ M + ++L VHDE++ E P Sbjct: 815 --ERTAT------NTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQ 866 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PL+ E + + Sbjct: 867 EIDILEELVPKVMDSAVK--LNVPLRVEAHHGVNW 899 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 90/609 (14%), Positives = 169/609 (27%), Gaps = 146/609 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + ++ G+ +LA ++ + Sbjct: 362 DLTVWALREGVRARPG--DDPLLLAYLYDPSNN------------QPASTVRRYGVGDWT 407 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + + W+ + E L+ + ER L + + Sbjct: 408 DRARDRALAARW-------LWREMSDRL----EGEERLWWLYR---EVERPLQGVLAAME 453 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---- 251 RG ++D+D +L L + +A E ++L+ +I +L + L L+ G+ Sbjct: 454 RRGVKLDVDYLLALSQELAAELERLEAEIHRLAGHPF-NLNSRDQLETVLYDELGLAAGR 512 Query: 252 -DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 T S+L + IL + L+ L + V GRL Sbjct: 513 RTAKTGKRSTSASVLETLRGAHPIVEKILQYRELAKLKGTYLDPLPKLVHPRTGRLHTRF 572 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P +R + Sbjct: 573 HQTG-TATGRLSSSDPNLQNIP------------------------IRTEIGRRIRKGFV 607 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G LVVAD + IE RVLA ++G++ I+ F G DI+ T A F Sbjct: 608 AGEGYLLVVADYSQIELRVLAHLSGDENLIRIFQEGRDIHTQTAAWMFGVE--------- 658 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 +V+ + + + Sbjct: 659 -----------------------------------DVEVDPFRRRAAKTINFGVLYGMSA 683 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + + + + GV + + E Sbjct: 684 HRLSRELGIDYGEAQAFIDRYFDSYPGVRAFMERVLEEARERGY---------------- 727 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + RR ++ + A ++ VQ + D+ Sbjct: 728 ----------VETLFGRRRHVPELLSKARNVREAAERV---------AFNMPVQGTAADL 768 Query: 610 LCEGMK----NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLK 664 + M G ++L VHDE+V E P+ + + + M + W +PL Sbjct: 769 IKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKATMEEA--WRLDVPLA 826 Query: 665 AEGYEAKRY 673 E + + Sbjct: 827 VEVGVGRDW 835 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 96/673 (14%), Positives = 171/673 (25%), Gaps = 163/673 (24%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW +E L + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187 + + + + L K+ L L D E L Sbjct: 423 LETDEVVYGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G ++D + ++ KL +DI ++ + L + LF Sbjct: 483 ANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFE 541 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 G+ T +L IL + + L + + D Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 602 GKIHTRYMQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420 +R + S L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 637 LIRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNL----------------------- 728 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + ++ G+ ++ Sbjct: 729 ----------------GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFH- 771 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RR D+ + R + Sbjct: 772 -------------------------RRRELPDINSRNFNVRNFA---ERTAI------NS 797 Query: 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTK 653 +Q + DIL M N K ++L VHDEI+ E P ++ L M Sbjct: 798 PIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMED 857 Query: 654 NPSWAKGLPLKAE 666 A +PL A+ Sbjct: 858 AVELA--VPLIAD 868 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 105/657 (15%), Positives = 186/657 (28%), Gaps = 158/657 (24%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +T A AWD V +L + + + + + G+D Sbjct: 333 AKLTGLAAAWD-GKVY-----RGPTDLEELKGFHELSALA-----AK-DLAVLAGKEGLD 380 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 IP +LA P++ + A + P Sbjct: 381 IPPG--DDPMLLAYLYD-PANSEPASTVR----------------RYGAGDLVADPVSHA 421 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A W+ + D L+ + E+ L + + RG +D+ + Sbjct: 422 QAAW--LLWETLSARTQGDE----RLWWLYR---EVEKPLAAVLAQMECRGVALDVPYLQ 472 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLK 262 +L E + +E L+ +I +L + L L+ G+ T Sbjct: 473 ELSEELGKELGYLEAEIHRLAGHPF-NVNSRDQLEAILYDELGLQAGGKKTTTGKRSTAA 531 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 S+L IL+ + L+ L + + GRL A TGR S Sbjct: 532 SVLEEMRSLHPIVGKILDYRELAKLKGTYLDPLPKLIHPKTGRLHTRFNQTVA-ATGRLS 590 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R +A G LVVAD Sbjct: 591 SSDPNLQNIP------------------------VRTEVGRKIRKAFVAEKGYCLVVADY 626 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA ++G++ K F DI+ T A F +KV + R K + Sbjct: 627 SQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEKVDPQHRRAAKTIN----- 681 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ + + + Sbjct: 682 ---------FGVLYGMS------------------------------AHRLSGELGISYA 702 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + A + V + + + ++ Sbjct: 703 EASGFIERYFASYPKVRLWIEK--------------------------TLAEGRERGYVE 736 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 RR +D++ + A ++ VQ + D++ M Sbjct: 737 TMFGRRRFVADLESKNRAIKEAAERM---------AFNMPVQGTAADLMKLAMVKLYPKL 787 Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + G +VL VHDE+V E P+ V + C +M W +PL+ + Sbjct: 788 KERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV--WELDVPLEVGVGIGHNW 842 >gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43] gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43] Length = 656 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 166/703 (23%), Positives = 278/703 (39%), Gaps = 84/703 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 LF+D E S L + G+ Y + + + + D E + +P ++ +L Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWEYGNVVPKQIVMHLT 65 Query: 63 DETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114 + VAHN+ F+ ++ ++ G +I + C++ AR NGLP SL AC Sbjct: 66 SGG-LFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 124 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL K EG A++ K +P D T +H + + +Y D +A ++ Sbjct: 125 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG I + Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 295 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQALNR 349 L V GRL+ ++GA GR + PR + + A R Sbjct: 296 LRAHVG--GRLQHHTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 352 Query: 350 GETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G+ + R A G LV ADL+GIEAR+ W+A + K++A Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G D Y ++ D V+K+QR +GK +LALG+ G F +MA++ G+ L Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLPP 472 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + WRA + W Sbjct: 473 EQVS---------------------------------------EIVYNWRAGRPAFERWW 493 Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 + + G + N ++ + R + + LPS R + Y + + Sbjct: 494 SLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 553 Query: 575 GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 G + T K+ N Q +SRD+ + + + +IV ++DE + Sbjct: 554 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRVE-EIVHHIYDEAL 612 Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + L M + +W GLPL AEG+ R+RK Sbjct: 613 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 96/673 (14%), Positives = 171/673 (25%), Gaps = 163/673 (24%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW +E L + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187 + + + + L K+ L L D E L Sbjct: 423 LETDEVVYGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G ++D + ++ KL +DI ++ + L + LF Sbjct: 483 ANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFE 541 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 G+ T +L IL + + L + + D Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 602 GKIHTRYMQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420 +R + S L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 637 LIRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNL----------------------- 728 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + ++ G+ ++ Sbjct: 729 ----------------GISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFH- 771 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RR D+ + R + Sbjct: 772 -------------------------RRRELPDINSRNFNVRNFA---ERTAI------NS 797 Query: 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTK 653 +Q + DIL M N K ++L VHDEI+ E P ++ L M Sbjct: 798 PIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEIILEVPRDELLAMKALVKETMEA 857 Query: 654 NPSWAKGLPLKAE 666 A +PL A+ Sbjct: 858 AVELA--VPLIAD 868 >gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] Length = 896 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 77/658 (11%), Positives = 173/658 (26%), Gaps = 130/658 (19%) Query: 33 CAYAWDDEPVKLWDRTEQS----AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 ++ V + + ++ + ++ + + I K+ GI + Sbjct: 348 LCFSTKLHEVSYINLPNDKNKALEIILQFQAIFENKNKILISADVKNDIIWLKRA-GIKL 406 Query: 89 PSKRWICTSVLARTN--GLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + L LN+ +K K + ++ Sbjct: 407 K-NDIFDIKIAHYVLHPDISHDLGRVALEYLNYKLSGSK----KEDQQLTLQFDEEAGTE 461 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 D A E D++ T L ++ E L + + G ID + Sbjct: 462 DNDFAEKTDVIFQLHEKLCDDLQQT----GLLALYNNIEMPLVFVLADMEYEGVSIDCNE 517 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGT 260 + + + + ++++I +L + L LF I T Sbjct: 518 LQSISSELKERIDIIEKEIYELAHQEF-NISSPKQLGEVLFDKLKIDSNHKKTKSGQYST 576 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 + +L + IL+ L + G++ A TGR Sbjct: 577 SEQVLVKLEDEHPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEA-ATGR 635 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R + + Sbjct: 636 LSSLNPNLQNIP------------------------IRTEEGRKIRKAFVTGNDDYLFFS 671 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E R++A ++ + I AF +G D++ T +K ++ +++V+ E R K Sbjct: 672 ADYSQVELRLMAHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFG 731 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + F+ + + + ++ + + + Sbjct: 732 IIYG-----ISAWGLAERLHISRKEGKELIDGYFDLYPGVKKYMEESVEKARKKEFVETI 786 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 +G L R + Sbjct: 787 MGRRRYLRDINSRNAV---------VRGMAER---------------------------- 809 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + +N K+ +Q K Sbjct: 810 -------------------NAINAPIQG---SAADIIKMAMICIQ-----------KRIQ 836 Query: 619 KNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + G +++ VHDE+ + + + + +L + M +PL + Sbjct: 837 EEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVTNCMEHVIK--LSVPLTVSTGFGNNW 892 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 104/667 (15%), Positives = 180/667 (26%), Gaps = 144/667 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSL------FE 76 E +I A + D V D + L++ V + FE Sbjct: 334 EDKLIKGAALSTGDATV-YVDCAGFITPDYLGHKLIEI-SKAGVKLCFWDLKNAMHILFE 391 Query: 77 RI-------LFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKM 125 + + +K +I +V A + A L Sbjct: 392 LMNQDEKAAVLEKGGKTEIFPTAV-DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQAD 450 Query: 126 EEGKALIARFCKGSIDSPPYD-CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 GK + + N A+ F V A + L + E Sbjct: 451 LFGKTKLNAALEDDSMLEAVTTYACYNAYVAFAAF-----EKVIAEIKEEGMLDIYENIE 505 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + +G +D + + + ++ +L++ I + L + Sbjct: 506 MPLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYSQAGEEF-NINSPKQLGVI 564 Query: 245 LFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 LF GI+ ++ T +L + T IL + + L+ V Sbjct: 565 LFEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQLAKLKSTYADGLAACVDE 624 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+R T + TGR S QN+P Sbjct: 625 DGRIRSTFMQTV-TATGRISSTEPNLQNIP------------------------IRMELG 659 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + AD + IE RVLA ++G++ I AF G+DI+ +T + FNTP Sbjct: 660 REIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTASLVFNTPF 719 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D+V+ QR K + G+ Sbjct: 720 DEVTDLQRRRAKAVNF--------------GIVYGIS----------------------- 742 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A + + + + + + + L R Sbjct: 743 -------AFGLAKDIGVGRKEAQEYIDNYFVAYPKMHEFLEGLKSHAKEKGYVTTMYGRR 795 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 R + + N T Q + Sbjct: 796 R------------------------------PIPELASSNFMTRQFGE-----RVAMNSP 820 Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M N ++L VHDE++ ET ++ V + M Sbjct: 821 IQGTAADIIKIAMVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQVEKLIAEEMENA 880 Query: 655 PSWAKGL 661 A L Sbjct: 881 AKLAVDL 887 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 90/643 (13%), Positives = 174/643 (27%), Gaps = 159/643 (24%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP- 106 + L + + + + HN+ + K L IDI T + A Sbjct: 358 ENEEKSKEYLKKLFENTS-EKIIHNAKNLFTVLSK-LDIDIN-NFVFDTEIAAYLIESSD 414 Query: 107 --SSLKNACLALNFSE---HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 +LK ++ L R + Sbjct: 415 KEYTLKTLFETYLHETYQDISQEISNLSNLYQRLKEKIK--------------------- 453 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ L + E L + + G+++D + + +L+E E Sbjct: 454 --------ELQMEDLLYKI---ELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQ 502 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278 ++I ++ + L LF + ++ ++ T +L D I Sbjct: 503 KEIYEMAGEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKI 561 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + DGR+ + + TGR S QN+P Sbjct: 562 TYYRQLTKLNSTYVEGLIHVIDQDGRIHSSFNQTV-TTTGRLSSTEPNLQNIP------- 613 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + ++ AD + IE RVLA +A ++ Sbjct: 614 -----------------IKYEMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDEN 656 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 A+ DI+ T ++ FN P+D+V+KE+R+ K + + Y Sbjct: 657 MKTAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVYGISDFA---------- 706 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + K+ + + +++ V Sbjct: 707 ----------------------------------LSEDLKISKKEAKQYIDTYFSRYPKV 732 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + RR + IV RL Sbjct: 733 KEYISSTIAKAEKELYVNTIFNRRRFIPEITSSNK-------IVKALGDRLAM------- 778 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDE 631 +Q + DI+ M N K ++L VHDE Sbjct: 779 ---------------------NAPIQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDE 817 Query: 632 IVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 I+ +V L M + +PL+ + + Sbjct: 818 IILNVYKDELETVKELVKKEMESVIDF--SVPLEVDINTGTTW 858 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 101/681 (14%), Positives = 189/681 (27%), Gaps = 149/681 (21%) Query: 28 AVITLCAYAWDD---EPVKLWDRTEQSAMPSD---------------LLQYLRDETVMCV 69 A I + + + +P+ L L + V+ + Sbjct: 373 ANILGLCLSLYNIYINQYIYIPISNNIQIPNQYNNKNYLSLKNVLLNLQPILENPAVVKI 432 Query: 70 AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK 129 N F L K+ I++ K + ++ N L K Sbjct: 433 GQNMKFNYSLLKRH-NINLSGK-IFDVILEFYILYGTTN------YQNIKRFLNKETFNS 484 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 L + + ++ + + ++ Y + + A +L + L P Sbjct: 485 ILNFQQSYDNYNNYIVKEIKNIYQES-----LYAIQLILAIFDLHQILWPQLYSNDKLKK 539 Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E L + I G ID L+ + L +L G + Sbjct: 540 IFQEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLA-GTSFNLDSI 598 Query: 239 YALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L+ L+ + + S T + +L + +IL + S N Sbjct: 599 KQLQEILYKKQKLPILKKTPSGSPSTNEEVLKKLSHKYPIPKIILKYRSLSKLKSTYTNK 658 Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L V+ R+ + + TGR S QN+P Sbjct: 659 LISMVNTESNRIHTSYNQT-RTATGRLSSANPNLQNIP---------------------- 695 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R IA + +V AD + IE R++A ++ + I F +G+DI+ TT Sbjct: 696 --NRNHDGRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTA 753 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F T ++ V+ EQR K + L Y L + + F+ Sbjct: 754 SEIFVTSLNLVTNEQRHQAKTINFGLIYGMS-----AFGLSKQLSVTCYEAQKYVDRYFQ 808 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + ++D ++ L G L + +G Sbjct: 809 RYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYL---------PNIYSKNLSKKKGAERAAI 859 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + + M Y Sbjct: 860 NAPMQGSAADI---------------------------------------IKKAMISINY 880 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 K + VQ M + VHDE+V E + + + LM Sbjct: 881 WLKQDDIPVQ----------MI----------MQVHDELVFEVQNNFIDTAIKQIKKLME 920 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + + +PLK + K + Sbjct: 921 EC--FILDVPLKVDIGVGKNW 939 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 92/606 (15%), Positives = 163/606 (26%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ +LA ++ + Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E K L + E+ L + + Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249 G R+D+ + L +A+E ++L+E++ +L + L LF Sbjct: 447 EATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 G T ++L + IL + ++ L V GRL Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + +R Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 M L VHDE++ E P V L M K A +PL+ E Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823 Query: 668 YEAKRY 673 + + Sbjct: 824 GMGEDW 829 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 200/654 (30%), Gaps = 139/654 (21%) Query: 35 YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85 Y D+EPV T + + + + F+ G Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINK----LSFDIKPCIYHLMRYG 383 Query: 86 IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141 IDI + ++ S++ + + + + GK + S + Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTILESDE 442 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + +L+ + + + E L++ D E L + + G + Sbjct: 443 KEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + ++++ EL E K +++ + +L G + + L LF + ++ ++ Sbjct: 497 KKETLVEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T + +L + D IL + ++ + + + DG++ T Q A +TG Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTIA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R + S G L+ Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSGGNVLLD 650 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA +A ++ I AF +G DI+ T ++ F DKV+ QR+ K + Sbjct: 651 ADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G + Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + ++G+ Q +D+ ++ Sbjct: 727 TRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMN------------------- 767 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR ++K + + ++ +Q + DI+ M Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 K ++L VHDE++ + P V + +MT + + Sbjct: 812 NRLNEEKLKAKLILQVHDELIVDCPKDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 >gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] Length = 1022 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 89/699 (12%), Positives = 171/699 (24%), Gaps = 172/699 (24%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-K 91 A + + L D + H+ + + DI Sbjct: 436 LGLAVTAGHAIEISLDTPG-----IREALADPALPKQVHDLK---AVLRALQPHDITLAG 487 Query: 92 RWICTSVLARTNGLPSS---LKNACLA---LNFSEHLTKME--EGKALIARFCKGSIDSP 143 + + S L + + TK + K L + + Sbjct: 488 PITDVMLQSYLLNPTHSSHTLIDLAARTTSRALTHQPTKDNPNDPKRLPEAAAAIARLAV 547 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT--------------------------RELFKRL 177 A + + T L Sbjct: 548 TLGEQLAEVPTTHVIPKDDPALGGAITTEMLFADKAQVEGARAQGAASASSGPLALNPEA 607 Query: 178 IPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 PL++ + L + + G R+D +L+ ++ +A L E I Sbjct: 608 SPLNEHSTLAEVYEQLDLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYAS 667 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKSILSHSNITQLAKDLILNRL 282 + + L LF + + T + IL ++L Sbjct: 668 SGHRF-NINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYR 726 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 L+ L +GR+ T G + TGR S QN+P Sbjct: 727 QLQKLKSTYLDQLPSLTDVNGRIHTTFNQVG-TATGRLSSINPNLQNIP----------- 774 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA+ G L+ AD + IE R++A + + + A+ Sbjct: 775 -------------IRTAVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLDAY 821 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G+DI+ T A+ F + KE RA K + + G+ Sbjct: 822 RTGKDIHTLTAAEVFEVDAATMDKETRARAKAVNFGIV--------------YGISPFGL 867 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + + + +++GV + Sbjct: 868 AAQLGIDQ------------------------------KVAKAYIERYFDRYKGVATFIE 897 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 E + R D++ Sbjct: 898 QTLETVRRDQAVKTAF--------------------------GRVRPIPDIQSRNPNQRG 931 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 + +Q + D++ M + L VHDE++ + Sbjct: 932 FAERT---------AVNTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQVHDELLFDV 982 Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674 + L M + +P+ AE +R Sbjct: 983 VPEEADEMQELVKTEMESAAEF--SVPIVAEVGLGDNWR 1019 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 87/670 (12%), Positives = 172/670 (25%), Gaps = 146/670 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLF---ER------- 77 A + ++ + S +L L + + + Sbjct: 355 EFLGMAVCFGEKDTYF--FKAGEELTSSVLSDLLTHSEA------AGYMTLDLKPQLGLL 406 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL-NFSEHLTKMEEGKALIA 133 + ++ + K + A ++ + GK+ Sbjct: 407 HMIEQRENGCLNQKNIFDNVIAAYLLNPLKNEYPYEDIAKDYCSLMIPSRVDLLGKSGYD 466 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 D P + A+ F E ++L E L Sbjct: 467 LAM----DEKPEGFLKTVCFMAYTAFSSKKAMMEELKATGMEQLYETI--EMPLVFTLAD 520 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ID + + E +A K+L+ I + + L + LF + Sbjct: 521 MEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAGEEF-NINSPKQLGVILFEKLEMPY 579 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ T +L IL + + L+ + DGR+ + Sbjct: 580 GKKTKTGYSTAADVLDKLAPEYPIVADILEYRQLTKLKSTYADGLANYIKEDGRIHTSFN 639 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R + Sbjct: 640 QT-ITVTGRLSSTEPNLQNIP------------------------MRIELGRLIRKAFLP 674 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ QR Sbjct: 675 AKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRR 734 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + Y + L Sbjct: 735 NAKAVNFGIVYG-----ISSFGLSQDLS-------------------------------- 757 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + + L E RR Sbjct: 758 -------ISKKEAAEYIERYFETYPKIKTFLDGLVEDAKKNGYVTTMFGRRRPVPELSSS 810 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 G+ + +Q + DI+ Sbjct: 811 NFMQ-----------------RSFGERVAM------------------NAPIQGTAADII 835 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 M +++TVHDE++ ET + V + M + + L Sbjct: 836 KIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEIDRVKEILTEGMQQAAD--LKVAL 893 Query: 664 KAEGYEAKRY 673 + + K + Sbjct: 894 AIDLHTGKNW 903 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 198/654 (30%), Gaps = 139/654 (21%) Query: 35 YAWDDEPVKL------WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LG 85 Y D+EPV T + + + V F+ G Sbjct: 328 YYVDNEPVIFAIYTDKVYITRNVDIVKSFKEEFESKDVNK----LSFDIKPCIYHLMRYG 383 Query: 86 IDIPSKRWICTSVLARTNGLP---SSLK-NACLALNFSEHLTKMEEGKALIARFCKGSID 141 IDI + ++ S++ + + + + GK + S + Sbjct: 384 IDIS-YNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKSLEDITGKGRSKKTILESDE 442 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + +L+ + + + E L++ D E L + + G + Sbjct: 443 KEIDNYIVKYMMFTNKLYEKISEIEEEDMMHLYR------DVEIPLIKVLCDMEFTGVCV 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 + ++++ EL E K +++ + +L G + + L LF + ++ ++ Sbjct: 497 KKETLVEMGELFEDEIKSIEDSVEELI-GKKININSSKQLAEVLFEDLELPVIKKNKTGP 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T + +L + D IL + ++ + + + DG++ T Q A +TG Sbjct: 556 STDQEVLEALSGRHEIIDYILRYRTIAKLKTTYIDGMVDLIKEDGKIHTTFQQTIA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R + S G L+ Sbjct: 615 RISSTNPNLQNIP------------------------IRTEEGRLIRKAFVPSQGSVLLD 650 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA +A ++ I AF NG DI+ T ++ F DKV+ QR+ K + Sbjct: 651 ADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNAKAVNFG 710 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G + Sbjct: 711 IVYGIGDYSLS--------------------------------------------KDLHI 726 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + ++ + Q +D+ + Sbjct: 727 TRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIMK------------------- 767 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR ++K + + ++ +Q + DI+ M Sbjct: 768 -------RRRYIPELKSKNYNVRSFGERV---------ALNTPIQGSAADIIKVAMVKFY 811 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 ++L VHDE++ + P+ V + +MT + + Sbjct: 812 NRLNEENLKAKLILQVHDELIVDCPEDEREKVLEIMKDVMTHAVDLKVDMKIDV 865 >gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322] gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322] Length = 837 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 88/628 (14%), Positives = 180/628 (28%), Gaps = 122/628 (19%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113 + +L DET +++ + + +G + + + A + ++ Sbjct: 317 FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTGIAF-DVLLAAYLLDTNDNNADIEGVA 374 Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + GK + + + +Q K D E T + Sbjct: 375 QHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLT-----SKLDSELTEK 429 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L E L + + G R+D + ++Q ++ K+++E I Sbjct: 430 NQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF 487 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ T +L IL + Sbjct: 488 -NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQS 546 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P Sbjct: 547 TYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSVDPNLQNIP------------------ 587 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + + +D + IE RVLA I+ ++ +AF G+DI Sbjct: 588 ------IRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 641 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + +T + F + V+ R K + + Y L + + Sbjct: 642 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQY-----LGITRKQAQQY 696 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + FE + + + + + + L R + +L Sbjct: 697 IDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR---------RRYLSDINSRNFNLRSF 747 Query: 528 FAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + SA + + + M RRL + Sbjct: 748 AERTAINTPIQGSAADILKIAMIEMA-------------RRLKEEKL------------- 781 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 QA ++L VHDE+V E P++ + Sbjct: 782 ----------------QAT------------------MLLQVHDELVFEVPESELEQLNQ 807 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L +M S +PL + K + Sbjct: 808 LVKEVMEHAVS--LHVPLITDSSWGKTW 833 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 276 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 90/654 (13%), Positives = 177/654 (27%), Gaps = 149/654 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A + + + L L D T+ H+ T I + Sbjct: 405 LGVAVEAGTALVLPLST-------LRPLLEDATIPKRVHDLKSTLRALS-TQDIALRG-A 455 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + ARF ++ + Sbjct: 456 VDDVMLYSYLLNPTHTTHRLSDV----------------TARFRNHALRETGENELPEAA 499 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 +F E RE ++ D L + + G RID +++ L + Sbjct: 500 H---AIFTLAPTLREEVEREDTLKVYEQID--LPLAPVLLAMEQHGVRIDSEMLRALGDR 554 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKSILSH 267 +A + ++ + I + + L LF + + T + +L Sbjct: 555 LAADMHRVSQQIYEQAGHRF-NINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLEE 613 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 L+L + +++L S GR+ T G + TGR S Sbjct: 614 LAAHNDVPRLVLEFRQLAKLKSNYVDSLPLLADSQGRVHTTFHQVG-TATGRLSSTNPNL 672 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R+ IA+ G+KL+ AD + IE R Sbjct: 673 QNIP------------------------VRTALGREIRAAFIAAPGRKLLSADYSQIELR 708 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 ++A + + + A++ G+DI+ T ++ F + + KE R K + Sbjct: 709 LMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNF---------- 758 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ +Q + Sbjct: 759 ----GIVYGISPFGLAQQLGIDQH------------------------------EARQYI 784 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + A++QGV + E + + R Sbjct: 785 DTYFARYQGVRAYIDRVLEQTRR--------------------------EQRVRTLFGRV 818 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD---- 623 D++ + + +Q + D++ M Sbjct: 819 RPIPDIQSRNANQRGFAERT---------AVNTPLQGTAADLIKLAMIRIDARIKKKNLQ 869 Query: 624 --IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 + L VHDE++ + P+ V L M +P+ A+ + +R Sbjct: 870 TLMTLQVHDELLFDVPEAEVEVVEDLVRHEMEHVVE--LKVPIVADIGIGENWR 921 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 276 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 98/662 (14%), Positives = 192/662 (29%), Gaps = 136/662 (20%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A A + D T + L ++L D T H++ G+ + Sbjct: 357 GLAIADESGRAAYVDLTTLAPEDEQALAEWLADVTKAKALHDAKGPMHALA-ARGLTLAG 415 Query: 91 KRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 T++ A ++ L E +G +D Sbjct: 416 LT-NDTAIAAYLVRPDQRSYGFEDLLLRYCHIELPETS------KQAAGQGMLDLGDVGA 468 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 T+ + A ++ + +++ E + + T+ G +DLD + Sbjct: 469 TQGDDAMARAAAVATLAAALDEAVADVGGIELMAELELPIVEVLATMEQAGIAVDLDALH 528 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260 +L+ + +D G + L++ LF G+ Sbjct: 529 ELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQVVLFETLGLPKTKKTKTGYTTDAEA 588 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + + + L L+ +R AS + + L +++ DGR+ T Q A TGR Sbjct: 589 IADLSEKAPHPFL-DALLRHRDASKLRST--VQGLIKSIGDDGRIHTTYQQTIA-ATGRL 644 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P + +R + G L+ A Sbjct: 645 SSTDPNLQNIP------------------------IRTESGRRIRRVFVVGEGYDCLMSA 680 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RV+A ++G++ I+AF +GED++ ++ F +V+ E RA K M L Sbjct: 681 DYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGL 740 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL + + ++ Sbjct: 741 --------------AYGLS------------------------------AFGLSKQLRIS 756 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + + + GV + + + + Sbjct: 757 TAEAQRLMDGYFERFGGVRDYLRQIVDDARATGYTETMM--------------------- 795 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ D ++ +Q + DI+ + M + Sbjct: 796 -----GRRRYLPDLTSDNRQRRDMAERM---------ALNAPIQGSAADIMKKAMLGVDE 841 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E V + M A +PL + Sbjct: 842 ALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVREQMGAAADLA--VPLDVNVGTGRS 899 Query: 673 YR 674 ++ Sbjct: 900 WQ 901 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 116/744 (15%), Positives = 211/744 (28%), Gaps = 143/744 (19%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDE 64 +D ET I E S M + L L + Sbjct: 81 LDTETTGLN----------VVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKDQLPLD 130 Query: 65 TVMC-VAH---------NSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA 112 V + N+ F+ + +GI+ K + T + A P LK Sbjct: 131 VVKKYIMQLENTKLDFSNAHFDLQVLYWQMGIN-NIKAYWDTQLAANLLNENEPHGLKYL 189 Query: 113 CLALNFSEHLTKMEEGKALIARF----CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV- 167 + K L P + + Sbjct: 190 YEKY----VKKEDTNSKQLATFGTLFRGIPFTKIPLDIAYLYAGKDPKMSYELAEFQRKY 245 Query: 168 -------EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 R L + D E + +G ++DLDL KL Q++ ++ Sbjct: 246 LNNTDADVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQKKAEV 305 Query: 221 DEDIVKLTDGIIR--------------------SSRQTYALRMYLFLITGIDLVDMSE-- 258 +E + + + + L ++ + + G+ VD + Sbjct: 306 EEKLKIEFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPVDREKPR 365 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 GT IL ++ LIL ++ L +S G++ T YG + T Sbjct: 366 GTGADILGKFDVP--VAKLILEYRELDKLLGTYIDKLPTVLSKRTGKIHCTFNQYG-TVT 422 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR+S QN+P + +R I +G L+ Sbjct: 423 GRFSSDSPNLQNIPSHNKD---------------------------IRKMFIPDDGNILI 455 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV------------S 425 D + E R LA ++G++ IKA+ NG+DIY T + + P ++ Sbjct: 456 GGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNPDGTTNTIG 515 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 K++R+ K + L + Y G L+L + F + + + Sbjct: 516 KQRRSNLKGVVLGIIYGRGVNSIAEK-----LNLTKKEAQSIIDEFFTLFPKVKQFTEDS 570 Query: 486 QDQYPEFAVKDKLIGTACELVKKA---WRAKHQ------GVLQLWKDLTEGFACVVQEGG 536 E L G L + K++ + + V E Sbjct: 571 IRMARELGYVTTLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTADDVENDEVPEYV 630 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 +S + R +R + +Q R+ Sbjct: 631 QLSYTAMLEKSRFDKKRKNVILSKARTEG---------ISIKNNTGLIAQAERQ------ 675 Query: 597 LTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649 + +Q + D+ M + GY +++ VHDEI+ + P V + Sbjct: 676 CVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPILES 735 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 M +P+ + K + Sbjct: 736 CMLNAVKLV--VPMSVDIDITKCW 757 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 83/597 (13%), Positives = 159/597 (26%), Gaps = 128/597 (21%) Query: 92 RWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 ++ A + L + K + + +S + Sbjct: 390 GIFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVPSRADWLKKMTLTEASEKEKESFGH-- 447 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A Y RL + E L + G ++ D + Sbjct: 448 --YLAYSAMIPVQAYSTLKKRLEETGMDRLFD--EIEMPLVYALYDMEKAGIAVEKDALA 503 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 + + +L+++I +L G + L + LF G+ ++ T I Sbjct: 504 EYGSRLTGRIDELEKNIYELA-GESFNINSPKQLGIILFEKLGLPFAKKTKTGYSTSADI 562 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGC 323 L IL + + L+ + D R+ G + TGR S Sbjct: 563 LEKLRTYDPIVGQILEYRQLTKLKSTYADGLAGYIRPDDQRIHGKFNQT-ITATGRISST 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + V AD + Sbjct: 622 EPNLQNIP------------------------VRMELGRLIRKVFVPKEDCIFVNADYSQ 657 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA +AG++ I+A+ +DI+ T ++ F+TP D+V+ QR+ K + + Y Sbjct: 658 IELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFDEVTPAQRSNAKAVNFGIVYG- 716 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + L + Sbjct: 717 ----ISSFGLSQDLS---------------------------------------ITKKEA 733 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 E + + + G+ E RR Sbjct: 734 ENYIQQYFRTYPGIKAFLDRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQ--------- 784 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 G+ + + +Q + DI+ M + Sbjct: 785 --------RSFGERIAM------------------NSPIQGTAADIIKIAMVRVNRRLKR 818 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L +HDE++ E +V + M + A +PL+ + + + Sbjct: 819 QHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAATLA--VPLEIDMHTGHNW 873 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 91/639 (14%), Positives = 182/639 (28%), Gaps = 141/639 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVL-ARTNGLPSS 108 + L TV N F+ + +G I + + + +L + ++ Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFD--MLLVSYLLNTTNN 413 Query: 109 LKNA---CLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + F+ T + GK + P +H+ + Sbjct: 414 SNDVGTVAKLHGFANIKTDEEVYGKGAKKKID-------PEAPEFFDHIVHKAKAIDQLH 466 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D+ + + D E + + + G +++ + + ++ + ++++ I Sbjct: 467 NDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTI 526 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + L LF + ++ ++ T +L +LN Sbjct: 527 FQEAGEEF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNY 585 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S ++ L + + + T ++TGR S QN+P Sbjct: 586 RQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIP---------- 635 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + ++ +D + IE RVLA I G+ + Sbjct: 636 --------------VRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQE 681 Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF GEDI+ TT + F D V+ E R K + G+ Sbjct: 682 AFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNF--------------GIVYGISD 727 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + N + + + ++ GV + Sbjct: 728 YGLANN------------------------------TGISRKQAHQFIQRYFEEYPGVKK 757 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 +D+ E RR D+ Sbjct: 758 YTEDIVEFAKNHGYVETIAH--------------------------RRRYLPDIHSRNFN 791 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635 L + R +Q + DI+ M N + ++L VHDE++ E Sbjct: 792 LRSFA---ERTAM------NTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFE 842 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ +V L +M +PLK E + K + Sbjct: 843 VPNDEMETVEKLIPKVMDSAIK--LNIPLKVESHWGKTW 879 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 102/662 (15%), Positives = 180/662 (27%), Gaps = 141/662 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A D D E +L Q+L D H++ G+++ Sbjct: 366 LAIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAKPAWHALTG-RGLEVRGV 424 Query: 92 RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYD 146 + T++ A L + + E G+ ++ S Sbjct: 425 -VMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDADSGAKSAGAR 483 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A A L E R +A E D E L + G D++ + Sbjct: 484 AV-AVVELAGPLAEEVADRGAQALLE---------DVELPLLRTLAEMEHDGIGADVEYL 533 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKS 263 ++ ++ + G + L+ LF G+ T Sbjct: 534 RGIEREFDAVVERAALGAYEAI-GRQVNLGSPKQLQEVLFDDLGMPKTRRTKTGYTTDAD 592 Query: 264 ILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ + L+ +R A + L +V+ DGR+ T Q A TGR Sbjct: 593 ALADLYVKTEHPFLEHLLAHREAIRLRQT--VEGLLRSVAPDGRIHTTFQQTIA-ATGRL 649 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P +R + G L+ A Sbjct: 650 SSADPNLQNIP------------------------IRTEEGYRIREGFVVGEGYETLLTA 685 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF +GED++ ++ F P D+V+ R+ K M L Sbjct: 686 DYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIKAMSYGL 745 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + Sbjct: 746 AYG-----LSAFGLSKQLSIDVA------------------------------------- 763 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + + GV + V + Sbjct: 764 --EARTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLM--------------------- 800 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ D ++ +Q + D++ M + Sbjct: 801 -----GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADLIKVAMLGVHR 846 Query: 620 ------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE+V E ++ L M +PL + Sbjct: 847 QMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAAAE--LSVPLDVSVGTGRS 904 Query: 673 YR 674 +R Sbjct: 905 WR 906 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 113/660 (17%), Positives = 204/660 (30%), Gaps = 134/660 (20%) Query: 33 CAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A+A D D T A L +L D + + H+ + G Sbjct: 363 VAFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLKVPLHAV-RARGWTFGGL 421 Query: 92 RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A L + L E ++ +G ++ G D Sbjct: 422 NM-DTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLD-GGADELEQKEI 479 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A V+A +F E EL L++ E L + + G +D D + + Sbjct: 480 SAELVKARAIFELAGALAAELE-ELGGA-KLLAELELPLLEVITELEAAGIAVDTDQLTE 537 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TL 261 L+ + E ++ G + L++ LF G+ ++ L Sbjct: 538 LEAHYLSRVTQAAESAYEVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAL 596 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +S+ + L +L ++ + L ++V+ DGR+ TLQ A TGR S Sbjct: 597 QSLFEKTEHPFLQH--LLEHRDATRLRTT-VEGLIKSVADDGRIHTTLQQTIA-ATGRLS 652 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380 QN+P +R + +G +L+ AD Sbjct: 653 SIEPNLQNIP------------------------VRTEEGRRIRDAFVVGDGYAELMTAD 688 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ ++ I+AF +GED++ ++AF+ P +++ EQR K M L Sbjct: 689 YSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSYGL- 747 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 GL + + K+ Sbjct: 748 -------------AYGLS------------------------------AYGLSQQLKIST 764 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + +A+ ++ GV + + A Sbjct: 765 EDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIF---------------------- 802 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619 RR D+ D ++ +Q + DI+ M N + Sbjct: 803 ----GRRRYLPDLNSDNRQRREMAERM---------ALNAPIQGSAADIIKVAMLNVHRA 849 Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E D V L M A +PL+ + + Sbjct: 850 LAEAGARSRVLLQVHDELVLEIADGERSDVEKLVREGMGSAAELA--VPLEVSVGYGRSW 907 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 89/654 (13%), Positives = 190/654 (29%), Gaps = 126/654 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIP 89 A A+ E E + Q+L DET+ +F+ +F G+ + Sbjct: 339 LAVAFGTEKQVYVTSIESAVQSEAFKQWLADETIEKT----MFDTKAMKVFANRFGLTVA 394 Query: 90 SKRWICTSVLARTNGLPSSLK---NACLALNFSEHLT-KMEEGKALIARFCKGSIDSPPY 145 + S+LA + + S T + GK + + + + Sbjct: 395 GATY-DVSLLAYLVDANEIVNEIYDVAKRFGISLLKTDEEVYGKGVKIKVPEEKEVFWNH 453 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + A + D +L+ + E L + + +G R+D + Sbjct: 454 LAAKIYVL-ATAPKRLLKQLDENEQAQLYW------EMELPLSDILARMEIQGIRVDQNR 506 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 ++++ + K++++ I +L + L + LF + ++ ++ T Sbjct: 507 LIEMGLQFEERLKEIEQTIYELAGEEF-NINSPKQLGVILFEKMNLPVIKKTKTGYSTAV 565 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + IL + + L + G++ ++TGR S Sbjct: 566 DVLEKLASQSPIVECILEYRQLAKLNSTYVEGLQTYIDEKGKIHTRFVQN-LTQTGRLSS 624 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P VRS + KL+ +D Sbjct: 625 QDPNLQNIP------------------------IRTEEGRQVRSAFLPSHPEWKLLSSDY 660 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALG 440 + IE RVLA +A + I+AF N DI+ T + F ++V+ R K + + Sbjct: 661 SQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNPEEVTSSMRRQAKAVNFGIV 720 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y L++ + E+++ + + + + + + L Sbjct: 721 YG-----ISDYGLSQNLNIPRKKAKEFIDRYLEEFQGVKDYMETIVAEARQNDYVETLFH 775 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + ++ Sbjct: 776 R---------RRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADI---------------- 810 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 ++ ++ + + N QA + Sbjct: 811 -----LKVAMIELDRELTERNF--------------------QA------KL-LLQVHD- 837 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P+ S+ +L +M S +PLKA+ + Sbjct: 838 ----------ELIFEVPEEEVESLQSLVEEVMENAVS--LSVPLKADSNIGNNW 879 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 130/352 (36%), Positives = 192/352 (54%), Gaps = 5/352 (1%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 4 NILWGDLETYCEIPI-TNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAI 62 Query: 62 RDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 63 AAPETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQ 122 Query: 121 HLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K +EGKALI FCK +S T H + W+ F Y D+EA RE++ RL Sbjct: 123 DKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPK 182 Query: 180 LSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 183 WNYQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQ 242 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 AL ++ G++L DM TL+ ++ ++ K+++ RL +S ++ K L + Sbjct: 243 RDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKEMLAIRLQASTTSTSKYKALMK 302 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+A N Sbjct: 303 GVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNA 354 >gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] Length = 900 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 92/658 (13%), Positives = 165/658 (25%), Gaps = 135/658 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL---FKKTL 84 A + A A+ D+ V + LL YL E V ++ Sbjct: 362 ADVHGLALAYQDQAV-YIPIEDVRQ-DEALLAYLAGEKTKIV-----YDVKACLHLADGA 414 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLK-NACLALNF-SEHLTKMEEGKALIARFCKGSIDS 142 G+ I + + A + GK + + + Sbjct: 415 GLTINGMKI-DAMIAAFLCDSTLTSDQKIREKFGLTETVTMDEVYGKPGKMKLPEPQLQR 473 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 W+ K E+ D E L + + G RID Sbjct: 474 QLCAQKIQLIDALWKDSEPKLK-----EMEIVSLFY---DVEMPLAAVLYKMEKEGIRID 525 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + L + I G + L LF G+ T Sbjct: 526 SQTLDDIARQTQARLDALTDAIYAAA-GETFNINSPKQLGEVLFDKLGLPASGKKRSTSA 584 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L +L L + + DGR+ A++TGR S Sbjct: 585 DVLEKLLGVHPIIADLLEFRKYQKLYSTYAEGLKKYIHPDGRIHTIYNQC-ATQTGRLSS 643 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+ S VR + S G LV +D + Sbjct: 644 TEPNLQNI------------------------SVRDEESREVRKAFLPSEGNVLVASDYS 679 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A E + AF + DI+ T + F P+D+V + R K + + Sbjct: 680 QIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAVNFGIV-- 737 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ SQ + + Sbjct: 738 ------------YGISDFGLSQQLD------------------------------ISRAQ 755 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + + + + + Sbjct: 756 AKEFIERYLQSYPNISKYMDQVISFCQEHGYTATML------------------------ 791 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR ++ + +Q + D++ M K Sbjct: 792 --GRRREVPEIHDKNYMTREFGKRA---------AMNAPIQGSAADLIKLAMIRIDKAIS 840 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ + + ++ + M +PL AE + Sbjct: 841 EKGLQSKMILQVHDELIFDALPSELDALCAIIQEGMEHAME--LKVPLVAETKIGDTW 896 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 81/506 (16%), Positives = 143/506 (28%), Gaps = 104/506 (20%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G ID+ + KL + + + ++ + +L+ + L Sbjct: 4 EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELS-EENFNLSSPKQL 62 Query: 242 RMYLFLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 LF +D T +L ++ + ++ L Sbjct: 63 GEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTYIDALP 122 Query: 297 EAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ GR+ A+ TGR S QN+P Sbjct: 123 NLINEKTGRVHTNFNQA-ATATGRLSSSNPNLQNIP------------------------ 157 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 S +R + KL+ AD + IE R+LA +A E+ I AF +DI+ T Sbjct: 158 VRTEFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSLTAKL 217 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F + +S ++R +GK + + Y G K A G+ + E + Sbjct: 218 IF--EKEVISSDERRVGKTINFGVIYGMG---IKKFARSTGVSIP--EAKEFLIKYKERY 270 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + G E Sbjct: 271 SKIFKFLELQERLALSKGYVKTIFGRKREFKFDK-------------------------- 304 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 L K I L S+RR +Q +R Sbjct: 305 -----------NGLGRLIGKDPYEIDLQSARRA-------------GMEAQSLRAAANAP 340 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF-SVGTLC 648 +Q S DI+ M K ++L VHDE++ E + + Sbjct: 341 ------IQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVK 394 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYR 674 M +PL + + Sbjct: 395 KTMEDCVK--LNVPLLVDIGIGDNWM 418 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 94/590 (15%), Positives = 168/590 (28%), Gaps = 119/590 (20%) Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + A + + + + + P D Sbjct: 586 PAPVTDLKLAAYLLDPVRN------RYHLVDTARQF------FGWDLEEGPADRPGDPAV 633 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVL 207 + + EL R + + E L + + + G +D + Sbjct: 634 CTSSLLGRDAALCARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLE 693 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +L L + ++L E I +L + T L LF G+ +V ++ T + Sbjct: 694 ELGRLFTRRSQELAEQIYELAGQTF-NINSTQQLGQILFERLGLPVVKKTKTGYSTDAEV 752 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L +L+L + ++ L+E + DGR+ T Q A TGR S Sbjct: 753 LETLAARHPIAELVLEYRSLVKLQGTYVDGLAEHIGPDGRIHTTFQQTVA-ATGRLSSTQ 811 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R +A G +LV AD + I Sbjct: 812 PNLQNIP------------------------IRDEPGRSLRRAFVAPPGHRLVAADYSQI 847 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +G+ ++AFA G+D++ T ++ F P+++V+ EQR + K + L Y Sbjct: 848 ELRVLAHYSGDPGLVEAFAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQT 907 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + FE + + + + + L+G Sbjct: 908 -----DFGLARALRIDRADARRFMERYFERYPGVKRYMEETVRRARQQGEVTTLLGRRRP 962 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + + + V Sbjct: 963 V---------PEIRHRVFHIRQNAERVAINTPIQGTAADI-------------------- 993 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 +L V + I Sbjct: 994 -MKLAMIRVHRALAEEGLRAR--------------------------------------I 1014 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VL VHDE++ E PD +V L M + +PL E + Sbjct: 1015 VLQVHDELLVEAPDAEVAAVAALLRREMEGA--FRLDVPLVVEVKSGANW 1062 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 88/634 (13%), Positives = 172/634 (27%), Gaps = 129/634 (20%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKN 111 + L DE + + ++ E + I + ++ + + Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSLL-PYDISLRGIKY-DLKIAKYLLSPDNNSYDISE 417 Query: 112 ACLALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + S + GK + + + ++ Sbjct: 418 IAMEYGLSHLQSHEEFFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTAIRDSE 477 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +L D E L + + G ID + + AQ +L+ +I +L Sbjct: 478 M---TKLFE--DVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELAGE 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF + V ++ T ++L + I++ + Sbjct: 533 EF-NINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIISYRQYTKL 591 Query: 288 AILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L ++ + R+ + A TGR S QN+P Sbjct: 592 QSTYVEGLLNIINPNTERIHSSFNQTIA-ATGRISSTEPNLQNIP--------------- 635 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA G LV +D + IE RVLA I+ E+ I+AF+ Sbjct: 636 ---------VRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQAFSKDA 686 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T ++ F I +V+KEQR K + + Y Sbjct: 687 DIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDFGLSNN--------------- 731 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + K + +++ + + +D+ Sbjct: 732 -----------------------------LGITKKKAGQYIKTYLDRYKNIEKYMQDVVA 762 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + RR +K + + Sbjct: 763 FGEEHGYVTTIL--------------------------GRRRSIPQLKQKNIMIKNLGKR 796 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP 640 L +Q + DI+ M ++L VHDE++ E Sbjct: 797 L---------AMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDELIIEATADE 847 Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M+K + LK + + Sbjct: 848 QDYIKALLQEEMSKAYD--MKVELKVDINVGNSW 879 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 99/663 (14%), Positives = 188/663 (28%), Gaps = 140/663 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82 Y + +I A+ + V L E + + L + D ++ H+S ++ Sbjct: 331 RYTDDGLIDGIAFTREYG-VTLARAGETAGFDAFLAAFFADGSITKRTHDSK---PVYAA 386 Query: 83 TL--GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 L G + T +L + + + Sbjct: 387 ALRQGFTVSDAEPDDTMLLGYLLNP------LASSYAPARLCEE---------YTVFPPA 431 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D A + + T ++L + E L + + G+ Sbjct: 432 TENVPDGFSGCVDTALAVRALAPVLLRKLTENGQEKLYR--EVELPLARVLAQMEHAGFL 489 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + E + ++ ++++IV + L LF+ G+ ++ Sbjct: 490 VDAAGIAAYGETLGKKLAAIEQEIVDAVGYPF-NLNSPKQLGEALFVKLGLPHGKKTKTG 548 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L A D +L S + L + ++ DGR+ + +RT Sbjct: 549 WSTSADVLDKLRGAHPAIDALLGYRKLSKLKSTYTDGLLKVIAPDGRIHSSFNQ-VETRT 607 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R +A G LV Sbjct: 608 GRISSTEPNLQNIP------------------------VRSAEGRELRRFFVARPGWVLV 643 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA IA + I AF N EDI+ T ++ F P + V+ R+ K + Sbjct: 644 DADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVFGMPPEYVTPIMRSRAKAVNF 703 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + G+ + Sbjct: 704 GIV--------------YGIG------------------------------AFSLSQDIG 719 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + K + K GV + + Sbjct: 720 VSVKEADSYIKGYLQKFSGVRDYMERVIREAHEKGY------------------------ 755 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + RR V ++ + ++ R +Q + DI+ M Sbjct: 756 --VETLFGRRRVLPELLSSNHNMRAFGERVAR---------NTPIQGTAADIIKIAMVRV 804 Query: 618 TKNGYD------IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEA 670 ++L VHDE++ E P+ G + M S + L+A+ + Sbjct: 805 RDRLEREQMQSALILQVHDELIVEAPEDEAARAGQILEEEMEGAAS--LRVRLEADVHTG 862 Query: 671 KRY 673 + Sbjct: 863 HTW 865 >gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346] Length = 882 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 91/654 (13%), Positives = 185/654 (28%), Gaps = 126/654 (19%) Query: 33 CAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 AW + + + P + +L DET +++ + + +G + Sbjct: 338 VGLAWGNNKKIYTTNNLAVFESQP--FIDWLMDETRKKNVYDAKRTYVALNRYVG-KMTG 394 Query: 91 KRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSPPYD 146 + + A + ++ + + GK + + Sbjct: 395 IAF-DVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHL 453 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +Q K D E T + L E L + + G R+D + Sbjct: 454 ARKIKAIQFLT-----SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRL 506 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++Q ++ K+++E I + L + LF G+ ++ ++ T Sbjct: 507 KEMQVEFSERLKEIEEKIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVD 565 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L IL + + L + + D ++ ++TGR S Sbjct: 566 VLEQLKEQAPIVADILTYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSV 624 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382 QN+P +R + + +D + Sbjct: 625 DPNLQNIP------------------------IRLEEGRKIREAFVPREDNWLIFSSDYS 660 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441 IE RVLA I+ ++ +AF G+DI+ +T + F + V+ R K + + Y Sbjct: 661 QIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVY 720 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + + + FE + + + + + + L Sbjct: 721 G-----ISDYGLSQNLGITREQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 775 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + +L + SA + + + M Sbjct: 776 ---------RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEM--------- 817 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 +L E +QA M Sbjct: 818 ---------------------------------AHRLKEEKLQAT--------ML----- 831 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E P++ + L +M S +PL + K + Sbjct: 832 -----LQVHDELVFEVPESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 878 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 88/671 (13%), Positives = 172/671 (25%), Gaps = 146/671 (21%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 K+ + A I + + +E E + +++ L + V + ++ Sbjct: 331 KLETGSKAISGKIDKILFYFKNETKMYIYHPEAK-IAAEIKFILESKKVKKLMPDAK--L 387 Query: 78 ILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + + + + SSL L+ Sbjct: 388 AFLSLLKNEVKVAGISFE-PLLAFYLLQPSSSLPELEEVLSHE----------------- 429 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTIN 195 S + A + + T + L + E L + + Sbjct: 430 ----LSLSFTELETEQKLAVKTSKLFELETKLITKLKENNLLNLYQEIELPLIKVLAQME 485 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G ++D D + L E + + + + KL + L LF G+ Sbjct: 486 LNGVKVDKDWLANLSEKLGKRLAIITDKAHKLAGEEF-NLNSPKQLGEILFEKLGLPVIK 544 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQF 311 T S+L LI + +++L ++ ++ + Sbjct: 545 RTKTGYSTNASVLEKLEGKHEIIPLISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQ 604 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370 + TGR S QN+P +R I Sbjct: 605 MV-TATGRLSSTEPNLQNIP------------------------IRTEEGREIRKAFIPS 639 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + L+ D + IE RV A ++G+ +AF N DI+ T A+ F + V+ + R Sbjct: 640 RSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRR 699 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 KV+ G+ Sbjct: 700 HAKVIN--------------FGIAYGMS------------------------------AY 715 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + + GV + + E + Sbjct: 716 GLSQDLDIPVEEAQTYIDKYFERFSGVKKYMEQTIEKVKKLGYAETMF------------ 763 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR ++ S R VQ + DI+ Sbjct: 764 --------------GRRRYIPEINSSN---YHRRSFAERTAI------NTPVQGTAADIM 800 Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663 + M + + +I+L VHDE+V E + M +PL Sbjct: 801 KKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMENTTK--LDVPL 858 Query: 664 KAEGYEAKRYR 674 + + +R Sbjct: 859 IVDLQIGENWR 869 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 89/650 (13%), Positives = 189/650 (29%), Gaps = 157/650 (24%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D E VK + L +E + V H+S ++ K I + + T Sbjct: 368 DKEEVKYF---------EILKNLFENEKIKKVCHDSKKVYVVLNKH-NITAKNIAF-DTK 416 Query: 98 VLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + A S LK+ + K + K + D +N + Sbjct: 417 IAAYLLQPSKSDYMLKDLIEEMLLLSLKEYDNI-KINETYYIKDIYEKLEKDIKESNMEE 475 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L + ++ G+R+D + + ++ E Sbjct: 476 LLYTV------------------------ELPLVEVLASMECAGFRVDENRLTEIGEKFK 511 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271 +E + L+++I +L D + + L LF + ++ ++ T +L Sbjct: 512 KEIETLEKEIHELADEEF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDK 570 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + I+ + + L + DG++ + + TGR S QN+P Sbjct: 571 HPIIEKIIEYRQITKLDSTYVEGLKNVIDGDGKIHSSFNQTV-TTTGRLSSTEPNLQNIP 629 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 +R + +N + + AD + IE R+L+ Sbjct: 630 ------------------------IKHEMGREIRKVFVPNNNESVIFSADYSQIELRILS 665 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IA ++ I AF + +DI+ T ++ F PID+V+ R+ K + + Sbjct: 666 HIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNFGIV---------- 715 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ + + + + Sbjct: 716 ----YGIG------------------------------AFSLSKDINVSRKEAKEYIDTY 741 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 +++ V + ++ D + +R+ Sbjct: 742 FSRYPNVKKYIDEIISKAE--------------------------VDGFVTTILNRKRYI 775 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624 +++ + +L +Q + DI+ M + Sbjct: 776 PEIQSRNKIVRGFGERL---------AMNTPIQGSAADIIKLAMVEVYNELKNRNLKSTL 826 Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE++ V + M +PL+A+ + + Sbjct: 827 ILQVHDELILNVYKDELEEVKNMVVDKMENVMKLL--VPLEADVNAGETW 874 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 328 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 381 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + A + + + KG+ + Sbjct: 382 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRSDEAV--YGKGAKRA 436 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ +R ++ L + E+ L + + G ++D Sbjct: 437 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 496 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ E +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 497 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPILKKTKTGYS 555 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D + T+ ++TGR Sbjct: 556 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 615 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378 S QN+P +R + S + Sbjct: 616 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 651 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA +D ++AF DI+ T F D+V+ R K + Sbjct: 652 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 710 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ +QN + Sbjct: 711 -------------GIVYGISDYGLAQN------------------------------LNI 727 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + GV + +++ + + Sbjct: 728 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 768 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR D+ + + ++ +Q + DI+ + M + Sbjct: 769 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 812 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P + L +M + + +PLK + + Sbjct: 813 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGP 870 Query: 672 RY 673 + Sbjct: 871 TW 872 >gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1] gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1] Length = 1062 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 151/458 (32%), Positives = 216/458 (47%), Gaps = 38/458 (8%) Query: 1 MS---KLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS 55 M +LF+D ET S L KVG +AYAE I +C YA D+ V+ WD TE MP Sbjct: 1 MKDFERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPR 60 Query: 56 DLLQYLRDETVMC---VAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +L + LR + V N LF+R++ ++ GID+P + T ++A + LP SL Sbjct: 61 ELRKALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDM 120 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEAT 170 C L K + GKALI RFCK + + TR H + W F Y D+ A Sbjct: 121 QCQVLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAM 180 Query: 171 RELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 RE++ R+ + E ++ L+DQ INDRG+ +D+DL + + +++L E+ + Sbjct: 181 REVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERF 240 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 G + + LR + + + TL +L + K LI RL +S +A Sbjct: 241 GGKLTGNDFLPILRDIA---PAFTIHNAQKSTLNDLLEDPDFPDEGKALIEMRLGASSTA 297 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 K N L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E S++ + + Sbjct: 298 STKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREG 357 Query: 349 RGETIADPLGLA-----------------------SDCVRSCIIASNGKKLVVADLAGIE 385 + + VR CII + GKK VVAD + +E Sbjct: 358 ESDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVE 417 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R LAW+AGE + F G DIY T K F D Sbjct: 418 GRGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDY 455 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 118/297 (39%), Gaps = 53/297 (17%) Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 EL LGY GG F A + GLDL + +K T W A+ + + + + Sbjct: 766 AHNCELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAK 825 Query: 492 FAVKDKLIGTA------------CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--- 536 K C+ +K+ WR H + W +L + C ++ G Sbjct: 826 RPPKPGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAY 885 Query: 537 ------------SISARRVANVPRLVMRRH-------KRDVHIVLPSSRRLVYSDV---- 573 ++ R + I LPS R + Y + Sbjct: 886 WAGANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSV 945 Query: 574 ---------------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + N T Q + TYGGKLTENIVQA+ RDIL M Sbjct: 946 TTEIDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVE 1005 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY+IVL+VHDE+++E PDT ++ LC+LM P WAKG PL AEG RYRK Sbjct: 1006 AAGYEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 192/672 (28%), Gaps = 144/672 (21%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D T L +L D H + Sbjct: 365 AYDADATALAIVAADGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEAK-----LAMH 419 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL + L E Sbjct: 420 ---DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPA---QQQL 473 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L L E + + + Sbjct: 474 SLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVLAEM 531 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +D+D + +LQ A + + G + L+ LF + Sbjct: 532 EHTGIAVDIDQLRQLQSEFADLIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELEMPKT 590 Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T L +L ++ + ++ L +V+SDGR+ T Sbjct: 591 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 649 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P A +R + Sbjct: 650 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 684 Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +G ++ AD + IE R++A ++ + I+AF GED++ ++AF+ PID+V+ + Sbjct: 685 VGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDL 744 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K M L GL + +K Sbjct: 745 RRRVKAMSYGL--------------AYGLSAYGLAAQLK--------------------- 769 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + ++ + A+ G+ +D+ + Sbjct: 770 ---------ISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVF---------- 810 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR ++ + A + +Q + D Sbjct: 811 ----------------GRRRYLPELDSSNRNVREAAERA---------ALNAPIQGSAAD 845 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 I+ M + + ++L VHDE++ E D ++ L M +A + Sbjct: 846 IIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSA--YALDV 903 Query: 662 PLKAEGYEAKRY 673 PL+ + + Sbjct: 904 PLEVSVGYGRSW 915 >gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 908 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 83/668 (12%), Positives = 179/668 (26%), Gaps = 139/668 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERIL 79 I + ++ + + + + H+ ER + Sbjct: 351 RIVGISLCVEN-KAFYFPIGHNDLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNI 409 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 + G+ + + + + + + + K Sbjct: 410 YSM-SGVGLNNI-YFDIMLASYCLNPAKSHCITDMSKEYLDFTAGVGSYAWKGSKK---S 464 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + + + +F Y D + + L D E L + + Sbjct: 465 SFANSSIEAGAKYANSISAAVFAIYKIFDFQIKEKKLSLLF--FDTEMSLVEILSEMEIS 522 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++DL + E I E K ++ +I K+ + L +F + ++ + Sbjct: 523 GIKVDLPFLRNFNEKIVYELKIIENNIYKIAGIEF-NINSQKQLSSVMFEKLNLPVIKKT 581 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYG 313 + T + +L + + + IL ++ L++ G R+ Sbjct: 582 KTGYSTDEEVLVELSSHEFPAE-ILKYRELQKLKSTYIDPLTDYCVYYGSRIHTIFNQAV 640 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 + TGR S QN+P R + Sbjct: 641 -TTTGRLSSTEPNLQNIP------------------------VKSAYGKEFRKAFVPERN 675 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAIG 432 K + AD + I+ RVLA I+ + I+AF G DI+ T + FN P + R+ Sbjct: 676 KIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLTDSLRSAA 735 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y L++ Sbjct: 736 KSINFGIIYGMSP-----FGLSKQLNIPFG------------------------------ 760 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + ++ V + + + + Sbjct: 761 ---------KAKEYIDGYFERYDKVKFWMEQIVKQASEDGYVRTIT-------------- 797 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R +++ + R VQ S DI+ Sbjct: 798 ------------GRIRYIPELRSTNA---QVRKAGERMA------LNTPVQGSSADIIKI 836 Query: 613 GMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKA 665 M + GY ++L VHD+++ E PD ++ + + M +P+ Sbjct: 837 AMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENPLH--LSIPIVV 894 Query: 666 EGYEAKRY 673 + + + Sbjct: 895 DIKAGRNW 902 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 96/652 (14%), Positives = 179/652 (27%), Gaps = 146/652 (22%) Query: 38 DDEPVKLWDRTE-----QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 ++ + D + L + D+ V V H+ K I+I Sbjct: 342 EENKGTIIDFKDISSKDSEEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQ-IEIKGFD 400 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + T++ A S +N G + Y Sbjct: 401 F-DTAIAAYLIDSSKSKYEILELVNH-------YIGDNPNSEGSNIKAILCSYLPMVYE- 451 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 E +L+ + E L + ++ G+ I+ ++ +LQ Sbjct: 452 -------KLKENLHKENMDQLYY------EVEHPLIYVLSSMESIGFNINQGMLDELQTK 498 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 +E K ++I +L D + L LF + ++ ++ T + +L Sbjct: 499 FKKEIDKTQKEIYELADEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNQEVLEKLM 557 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 I+ + + L V DGR+ + TGR S QN Sbjct: 558 NKHDIIPKIMYYRQITKINSTYVEGLKNVVDEDGRIHSNFNQTV-TTTGRLSSTEPNLQN 616 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARV 388 +P +R I LV D + IE RV Sbjct: 617 IP------------------------IKYEMGREIRKVFIPMEETDILVSCDYSQIELRV 652 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA IAG++ I AF + DI+ T ++ F PI +V+ R+ K + + Sbjct: 653 LAHIAGDENMIDAFEHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIV-------- 704 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ A K+ E Sbjct: 705 ------YGIS------------------------------AFSLAEDLKITKKEAEEYMS 728 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + ++ + + +++ + ++ RR + + IV RL Sbjct: 729 IYLERYPKIKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNK-------IVKALGDRL 781 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 +Q + DI+ M N Sbjct: 782 AM----------------------------NAPIQGSAADIIKLAMVNVYNKLNEKELKS 813 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE++ + V L + M + L + + Sbjct: 814 ELILQVHDELILNVKKDEFEEVKNLVAYEMENAIK--LKVALDVDVNFGDTW 863 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 92/606 (15%), Positives = 162/606 (26%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ +LA ++ + Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E K L + E+ L + + Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249 G R D+ + L +A+E ++L+E++ +L + L LF Sbjct: 447 EATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 G T ++L + IL + ++ L V GRL Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + +R Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 M L VHDE++ E P V L M K A +PL+ E Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823 Query: 668 YEAKRY 673 + + Sbjct: 824 GMGEDW 829 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 92/606 (15%), Positives = 162/606 (26%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ +LA ++ + Sbjct: 357 DLAVLASREGLDLVPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 397 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E K L + E+ L + + Sbjct: 398 ----------GEWTEDAAHRALLSERLHRNLLKRLEGE-EKLLWLYHEVEKPLSRVLAHM 446 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----- 249 G R D+ + L +A+E ++L+E++ +L + L LF Sbjct: 447 EATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPAL 505 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 G T ++L + IL + ++ L V GRL Sbjct: 506 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTR 565 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 566 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 600 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 601 VAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLM 660 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 661 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEE 715 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 716 GRKRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 762 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + +R Sbjct: 763 -----------------MKLAMVKLFPRLREMG------------------------AR- 780 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 M L VHDE++ E P V L M K A +PL+ E Sbjct: 781 -----ML----------LQVHDELLLEAPQARAEEVAALAKEAMEKAYPLA--VPLEVEV 823 Query: 668 YEAKRY 673 + + Sbjct: 824 GMGEDW 829 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + A + + + KG+ + Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRSDEAV--YGKGAKRA 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ +R ++ L + E+ L + + G ++D Sbjct: 439 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ E +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D + T+ ++TGR Sbjct: 558 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 617 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378 S QN+P +R + S + Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 653 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA +D ++AF DI+ T F D+V+ R K + Sbjct: 654 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 712 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ +QN + Sbjct: 713 -------------GIVYGISDYGLAQN------------------------------LNI 729 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + GV + +++ + + Sbjct: 730 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 770 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR D+ + + ++ +Q + DI+ + M + Sbjct: 771 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 814 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P + L +M + + +PLK + + Sbjct: 815 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGS 872 Query: 672 RY 673 + Sbjct: 873 TW 874 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 113/675 (16%), Positives = 194/675 (28%), Gaps = 150/675 (22%) Query: 15 PLPKVGVWAYAEQAVITLCA----YAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCV 69 PL G + A + + E D T +DL++ L + V Sbjct: 320 PLTPSGTYLVASRPAVMGKQGTRNVVLQPESWYAVQDCTVYPLEDADLVRLLDNADVTLE 379 Query: 70 AHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 N+ L+ K + + + A +S Sbjct: 380 VFNA---APLYAKAMAAGGWGSSIVWDGKLAAYLLDASAS-------------------- 416 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW 188 K I+ + + T A++ A +L +CK E T L + E L Sbjct: 417 KYQISELTASYRAAAAF--TCADYPDAGRLADLFCKMKAEITACGEDSLYN--EIEFPLA 472 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G +D D + + + E +++ I T + L LF Sbjct: 473 QVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHMETGSASFNPNSPKQLGEMLFDT 532 Query: 249 TGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 G+ + T L L +D IL A + L + + DGR+ Sbjct: 533 MGLPHGKKTQRGWSTDAETLESLRDYPLVED-ILQYRAYQKLNSTYVEGLLKVIGEDGRI 591 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T A RTGR S QN+P +R Sbjct: 592 HSTFNQTEA-RTGRLSSDNPNLQNIP------------------------IRTELGSQLR 626 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + IA G LV AD + IE R+LA I G++ +AF NGEDI+ +T AK + P ++V+ Sbjct: 627 AYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVT 686 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 R+ +A + + Sbjct: 687 SRLRSSA--------------------------------------------KAINFGIMY 702 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 A + + K + A V Sbjct: 703 GKGAYSLAKDIGVSVKEADAFLKNYLAAFPKVSGYMDKTIADAKACGY------------ 750 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + RR ++ + ++ ++ R +Q Sbjct: 751 --------------VSTLFGRRRALPELASSNFNVRSSGERMAR---------NTPIQGT 787 Query: 606 SRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658 + D++ M K ++LTVHDE++ E P + M +A Sbjct: 788 AADVIKLAMVRVWKRLRNEKMESRLILTVHDELIVEAPQAEAEKAAQILREEMEGCVQYA 847 Query: 659 KGLPLKAEGYEAKRY 673 +PL + + K + Sbjct: 848 --VPLSTDVHAGKNW 860 >gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813] Length = 880 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 96/690 (13%), Positives = 187/690 (27%), Gaps = 154/690 (22%) Query: 9 ETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63 E S +G + E L AW + T ++ + + L Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369 Query: 64 ETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL--N 117 + ++ + ID+P + T + +L + L N Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN 421 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 GK + P +H+ + ++ ++ ++ Sbjct: 422 LPLDTDDAVYGKGAKR--------AIPEKTRFLDHLAKKVKVLVDSEANIMQQLKVNEQE 473 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L + E+ L + + RG ++ + + ++ + + L ++I +L + Sbjct: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF-NINS 532 Query: 238 TYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF G+ T +L IL + + Sbjct: 533 PKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYI 592 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + + DG++ ++TGR S QN+P Sbjct: 593 IGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP--------------------- 630 Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + S L+ +D + IE RVLA I+ ++ I AF G DI+ + Sbjct: 631 ---VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687 Query: 412 TYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + F + V+ R K + + Y L Sbjct: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNL------------- 729 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + + ++ G+ + + Sbjct: 730 --------------------------GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKD 763 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 RR D+ + R Sbjct: 764 KGYVETLFH--------------------------RRRSLPDINSRNFNIRQFA---ERT 794 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 + +Q + DIL M N + ++L VHDEIV E P+ ++ Sbjct: 795 AI------NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848 Query: 645 GTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M S +PL A+ + + Sbjct: 849 KELVTKTMESAIS--LSVPLIADENAGETW 876 >gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4] gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4] Length = 887 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 85/652 (13%), Positives = 191/652 (29%), Gaps = 121/652 (18%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 W D+ E D + +D+ ++ + K+ +DI S Sbjct: 342 FCIGWGDDQQIYVAEPEVVFASDDFKNWAKDKEAQKQVFDAKRTYVALKRQ-NVDIASID 400 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + + + + K+ + E + + + KG+ + P + T Sbjct: 401 F-DILLASYLLNTKDNSKDLSEV----ATEHEYYEVSSDESVYGKGAKIAIPEEKTIIYD 455 Query: 153 VQAWQLFG---EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A ++ + + +L + E L ++ + G +++ ++++ Sbjct: 456 HIARKIKAIRILSKQLGENLEKNEQTKLFN--EMELPLSMVLAEMELTGVKVNDKRLMEM 513 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 +E A +++ + +L + L + LF G ++ ++ T +L Sbjct: 514 KEEFAIRLTDIEQRVYELAGEKF-NLNSPKQLGVILFEKMGYPVIKKTKTGYSTAVDVLE 572 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + IL+ + + L + + G++ A +TGR S Sbjct: 573 QLREQAPIVEHILDYRQIAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIA-QTGRLSSVDP 631 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384 QN+P +R + G ++ +D + I Sbjct: 632 NLQNIP------------------------IRLEEGRKIRQAFVPSHEGWEIFASDYSQI 667 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQG 443 E RVL ++ + +AF G+DI+ +T + F ++VS E R K + + Y Sbjct: 668 ELRVLGHVSDDKLLKEAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNFGIVYG- 726 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + + FE + +++ + + + + L Sbjct: 727 ----ISDYGLSQNLGISRKEAQHFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFQR-- 780 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + +L + SA + + + M + ++ Sbjct: 781 -------RRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIKIAMIKMDQKLKEST--- 830 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 + M Sbjct: 831 -----------------------------------------------MKATML------- 836 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P + L +M +PLK + K + Sbjct: 837 ---LQVHDELIFEAPKEEIEQLRALVVEVMEGAVE--LSVPLKVDSNSGKSW 883 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 92/639 (14%), Positives = 182/639 (28%), Gaps = 141/639 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVL-ARTNGLPSS 108 + L TV N F+ + +G I + + + +L + ++ Sbjct: 362 KQVKAILESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFD--MLLVSYLLNTTNN 413 Query: 109 LKNA---CLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + F+ T + GK + P +H+ + Sbjct: 414 SNDVGTVAKLHGFANIKTDEEVYGKGAKKKID-------PEVPEFFDHIVHKAKAIDQLH 466 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D+ + + D E + + + G +++ + + ++ + ++++ I Sbjct: 467 NDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTI 526 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + L LF + ++ ++ T +L +LN Sbjct: 527 FQEAGEEF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNY 585 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S ++ L + + + T ++TGR S QN+P Sbjct: 586 RQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIP---------- 635 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I ++ +D + IE RVLA I G+ + Sbjct: 636 --------------VRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQE 681 Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF GEDI+ TT + F D V+ E R K + G+ Sbjct: 682 AFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNF--------------GIVYGISD 727 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + N + + + ++ GV + Sbjct: 728 YGLANN------------------------------TGISRKQAHQFIQRYFEEYPGVKK 757 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 +D+ E RR D+ Sbjct: 758 YTEDIVEFAKNHGYVETIAH--------------------------RRRYLPDIHSRNFN 791 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635 L + R +Q + DI+ M N + ++L VHDE++ E Sbjct: 792 LRSFA---ERTAM------NTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFE 842 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ +V L +M +PLK E + K + Sbjct: 843 VPNDEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 417 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 475 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 476 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 534 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 535 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 594 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 595 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 630 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 631 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 690 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 691 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 726 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 727 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 766 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 767 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 792 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 793 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVP 851 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 852 EVMEQAVT--LRVPLKVDYHYGSTW 874 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 97/674 (14%), Positives = 186/674 (27%), Gaps = 129/674 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67 +ET S L A AW + + S ++L D + Sbjct: 324 LETLSEN-----------YHFEPVL-AVAWTQGDQAYATSGKVAFASSAFRKWLEDGDLP 371 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKM 125 ++ + + + G+ + + + A + L + L+ + Sbjct: 372 KISADLKRDS-ILLDHQGLTLAGVTF-DVGLAAYLVDVEKIKDLTSLATYLDLGIQVQLD 429 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 E KG + P + A H+ + + + D E Sbjct: 430 EVVYG------KGVKQALPENERLAQHLADKVSLLDQAVAPLTQQLDDLGMTQLYQDMEF 483 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + RG +D+ + ++ +L+ ++L+ +I L + L L Sbjct: 484 PLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQAF-NPNSPKQLGEIL 542 Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F G+ ++ ++ T +L +L + L L + + +D Sbjct: 543 FERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGTYLAGLPKFIQAD 602 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 603 GKIHTRFVQT-LTQTGRLSSADPNLQNIP------------------------IRMEEGR 637 Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-P 420 +R + G +L AD + IE RVLA I+G+ +AF G+DI+ T + F Sbjct: 638 KIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGLAE 697 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ + R K + + Y LD+ + ++ + Sbjct: 698 DEAVNSDMRRQAKAVNFGIVYG-----ISDYGLSQNLDMPRKEAKAFIDRYLAEYPGIST 752 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + Q + L G R + +L Sbjct: 753 FMQEIVAQAKKDGYVSTLWGR---------RRALPDIYSSNFNLRSFAERTAMNTPIQGT 803 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 +K L+ A Q Sbjct: 804 AADI----------------------------IKVAMVALDQAIRQ-------------- 821 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 RD+ + HDE++ E P + L +M S Sbjct: 822 ------RDLQARLLLQV-----------HDELILEAPQEEIAILEELVPEVMEGAVS--L 862 Query: 660 GLPLKAEGYEAKRY 673 +PLK E + Sbjct: 863 SVPLKVEAASGSNW 876 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A L + + Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWALERPFLDELRRNEQDRL 473 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ E +A++ + +++ I +L + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPK 532 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 592 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 593 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 628 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 629 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 688 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 689 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 724 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 725 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 764 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 765 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 790 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 791 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVP 849 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 850 EVMEQAVT--LRVPLKVDYHYGSTW 872 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A L + + Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWALERPFLDELRRNEQDRL 473 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ E +A++ +++ I +L + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELAGQEF-NINSPK 532 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 533 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 592 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 593 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 628 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 629 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 688 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 689 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 724 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 725 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 764 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 765 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 790 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 791 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVP 849 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 850 EVMEQAVT--LRVPLKVDYHYGSTW 872 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 330 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 383 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + A + + + KG+ + Sbjct: 384 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRPDEAV--YGKGAKRA 438 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ +R ++ L + E+ L + + G ++D Sbjct: 439 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 498 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ E +A++ + +++ I +L + L + LF + ++ ++ Sbjct: 499 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYS 557 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D + T+ ++TGR Sbjct: 558 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 617 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378 S QN+P +R + S + Sbjct: 618 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 653 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA +D ++AF DI+ T F D+V+ R K + Sbjct: 654 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 712 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ +QN + Sbjct: 713 -------------GIVYGISDYGLAQN------------------------------LNI 729 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + GV + +++ + + Sbjct: 730 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 770 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR D+ + + ++ +Q + DI+ + M + Sbjct: 771 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 814 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P + L +M + + +PLK + + Sbjct: 815 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGS 872 Query: 672 RY 673 + Sbjct: 873 TW 874 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 92/639 (14%), Positives = 182/639 (28%), Gaps = 141/639 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLG-----IDIPSKRWICTSVL-ARTNGLPSS 108 + L TV N F+ + +G I + + + +L + ++ Sbjct: 362 KQVKAVLESSTVQK---NV-FDAK--RTYVGLYRSSITLQNVDFD--MLLVSYLLNTTNN 413 Query: 109 LKNA---CLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + F+ T + GK + P +H+ + Sbjct: 414 SNDVGTVAKLHGFANIKTDEEVYGKGAKKKID-------PEVPEFFDHIVHKAKAIDQLH 466 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D+ + + D E + + + G +++ + + ++ + ++++ I Sbjct: 467 NDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTI 526 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + L LF + ++ ++ T +L +LN Sbjct: 527 FQEAGEEF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVDVLEKLAPDAPIVQNVLNY 585 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S ++ L + + + T ++TGR S QN+P Sbjct: 586 RQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIP---------- 635 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I ++ +D + IE RVLA I G+ + Sbjct: 636 --------------VRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQE 681 Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF GEDI+ TT + F D V+ E R K + G+ Sbjct: 682 AFREGEDIHATTARRIFGLASNDDVTPELRRQAKAVNF--------------GIVYGISD 727 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + N + + + ++ GV + Sbjct: 728 YGLANN------------------------------TGISRKQAHQFIQRYFEEYPGVKK 757 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 +D+ E RR D+ Sbjct: 758 YTEDIVEFAKNHGYVETIAH--------------------------RRRYLPDIHSRNFN 791 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635 L + R +Q + DI+ M N + ++L VHDE++ E Sbjct: 792 LRSFA---ERTAM------NTPIQGSAADIIKIAMINMDEALKPLKTRMLLQVHDELIFE 842 Query: 636 TPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ +V L +M +PLK E + K + Sbjct: 843 VPNDEMETVEKLIPKVMDSAIR--LNIPLKVESHWGKTW 879 >gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] Length = 889 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 97/665 (14%), Positives = 187/665 (28%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + D L ++L + + V ++ + Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQDPILKEFLEKTS-LKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 LG+++ + + + + + N + KG + Sbjct: 395 LGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LADDETFYGKGVKKAI 448 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P H+ A ++ V +L L D E+ L + + G ++ Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257 + +L++Q +KL ++I +L + L + LF G+ Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL+ + + L + + DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYVQ-DLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ ++ Sbjct: 739 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ + R + +Q + DIL M Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 K ++L VHDEIV E P + +V L M + +PL A+ Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAIQ--LSVPLIADEN 880 Query: 669 EAKRY 673 E + Sbjct: 881 EGATW 885 >gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 880 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 96/697 (13%), Positives = 185/697 (26%), Gaps = 166/697 (23%) Query: 8 IETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLR 62 E S +G + E L AW + T ++ + + L Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368 Query: 63 DETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-- 116 + ++ + ID+P + T + +L + L Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYT 420 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N GK + + + K V++ + ++ Sbjct: 421 NLPLDTDDAVYGKGAKR--------------AIPEKTRFLEHLAKKVKVLVDSEANIMQQ 466 Query: 177 LIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L + E+ L + + RG ++ + + ++ + + L ++I +L Sbjct: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526 Query: 231 IIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF G+ T +L IL + Sbjct: 527 EF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQIT 585 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + + DG++ ++TGR S QN+P Sbjct: 586 KLQSTYIIGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP-------------- 630 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S L+ +D + IE RVLA I+ ++ I AF Sbjct: 631 ----------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE 680 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ +T + F + V+ R K + + Y L Sbjct: 681 GADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNL------ 729 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + ++ G+ + Sbjct: 730 ---------------------------------GIPRKLAKQYIDTYFERYPGIKNYMET 756 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + RR D+ + Sbjct: 757 VVREAKDKGYVETLFH--------------------------RRRSLPDINSRNFNIRQF 790 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 R + +Q + DIL M N + ++L VHDEIV E P Sbjct: 791 A---ERTAI------NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841 Query: 638 DTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + ++ L M S +PL A+ + + Sbjct: 842 NEEIGAIRELVTKTMESAIS--LSVPLIADENAGETW 876 >gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 857 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 93/659 (14%), Positives = 179/659 (27%), Gaps = 147/659 (22%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-- 84 + I+ A + V + + L L D V+ A + K Sbjct: 330 HSKISTLTLAVEGG-VYEV---KSEDIGQWL-TALEDSEVVVTA-----DGKSLYKAALC 379 Query: 85 -GIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 GI ++ A L + + Sbjct: 380 AGIG--DLPVYDVTLAAYLLDPTRTAYGLTYLSEVFGRT--------------------L 417 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + +A ++ Y + L + L + G+ Sbjct: 418 NEVKGEAQNETANEAAFVYSLYGPVQQALEEKGLSSLFETIES--PLERTLAVMELNGFT 475 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 ++ D + +++ +++E L+ +I L G + T L + LF G+ ++ ++ Sbjct: 476 VNRDRLEEMKADLSREADALETEIYDLA-GESFNINSTKQLGVILFEKMGLPVIKKTKTG 534 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 T S+L IL A L+ L + R+ + + Sbjct: 535 YSTDSSVLEELAEQSEIVPKILKFRALKKLISTYLDGLEPLIDEKTERVYTSFNQMV-TA 593 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P +RS + G Sbjct: 594 TGRLSSSDPNLQNIP------------------------IRTEQGRKIRSFFVPGEGYDY 629 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LV D + IE R+LA ++ + I F + +DI+ T ++ F P D+V+ E R+ K + Sbjct: 630 LVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVFGVPFDEVTGELRSHAKAV 689 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L + + S F + + + ++ Sbjct: 690 NFGIIYG-----ISDFGLSRNLGITRNRAKEYIESYFARYSTIHDYMNGLVEEARRTGES 744 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + G + Sbjct: 745 RTMFGRL---------RTLPEISSKNFMRRSFAER------------------------- 770 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + +NT KL N VQ + Sbjct: 771 ----------------------TAMNTPIQG---SAADIIKLAMNAVQ-------KK--L 796 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 A +++ VHDE+V E P ++ L M + + +PL A+ + + Sbjct: 797 EALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEVVT--LSVPLIADIHTGTNW 853 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 102/664 (15%), Positives = 176/664 (26%), Gaps = 134/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + A + D T L +L D H + G Sbjct: 376 GRVDALAISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAH-GW 434 Query: 87 DIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDS 142 ++ T++ A L + C L L + G L G D Sbjct: 435 EL-GGVVSDTALAAYLVQPGQRRFDLADLCRKYLGRE--LEEDSSGDQLT--LDLGGEDG 489 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 V+A E + L L + E L + + G D Sbjct: 490 AGSGRQHLLAVRASATRDLAGVLSAELDKRGGTHL--LHEVELPLVDVLARLERAGIAAD 547 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEG 259 + +LQ A + E ++ + L+ LF G+ Sbjct: 548 RPYLEELQGEFAAAGRVAVERAHEIVGREF-NLGSPKQLQQVLFEDLGLPRTKKIKTGYT 606 Query: 260 TLKSILSHSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L+ ++L+ + + L + V+ DGR+ T A T Sbjct: 607 TDADALAWLASQTDNELPAVLLHHRDQTKLRTT-VEGLIKTVADDGRIHTTFNQTVA-AT 664 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-L 376 GR S QN+P +R + G + L Sbjct: 665 GRLSSTDPNLQNIP------------------------VRTDVGRRIRRAFVVGEGYEEL 700 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++GE I AF +G D + A+ F+ +++V E R+ K M Sbjct: 701 LTADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMS 760 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 L GL + + Sbjct: 761 YGL--------------AYGLS------------------------------AYGLSQQL 776 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + + + A+ GV + E V + Sbjct: 777 GITPEESKRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETIL------------------ 818 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ D ++ +Q + DI+ M Sbjct: 819 --------GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADIIKVAMLR 861 Query: 617 ATKNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 ++L VHDE+V E V + M+ +PL Sbjct: 862 VDAALTEGGLTSRVLLQVHDELVVEVAPGERAEVENIVAREMSSAYD--LRVPLAVSVGS 919 Query: 670 AKRY 673 + + Sbjct: 920 GQNW 923 >gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] Length = 877 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 98/663 (14%), Positives = 187/663 (28%), Gaps = 140/663 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85 + A++ D + D+ E P L ++L +T + V ++ + LG Sbjct: 333 DLVGFAWSCGD-KLYTTDKLELLQEPI-LKEFLE-KTPLKV-----YDFKKAKVLLNRLG 384 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 +++ + + + + + N + KG + P Sbjct: 385 LNLQAPAY-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAIPE 438 Query: 146 DCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 H+ A ++ V +L L D E+ L + + G ++ + Sbjct: 439 REKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKE 497 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEG 259 +L++Q ++L ++I +L + L + LF G+ Sbjct: 498 TLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYS 556 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L IL+ + + L + + DG++ ++TGR Sbjct: 557 TAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQTGR 615 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R + L+ Sbjct: 616 LSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLS 651 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 652 SDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNF 711 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L Sbjct: 712 GVVYG-----ISDFGLSNNL---------------------------------------G 727 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + G+ ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK------------------ 769 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ + R + +Q + DIL M Sbjct: 770 --------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMIQL 812 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEA 670 K ++L VHDEIV E P + +V L M + +PL A+ E Sbjct: 813 DKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAIQ--LSVPLIADENEG 870 Query: 671 KRY 673 + Sbjct: 871 ATW 873 >gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG] Length = 881 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 87/631 (13%), Positives = 181/631 (28%), Gaps = 128/631 (20%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ ++L D + R + LG+ +P + + + + + Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLKLPDIAF-DVLLASYLINPDENSNDLGK 418 Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + GK + + + + LF + Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L +D E L + + +G ++ + + +Q K L+E I Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEA 528 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L+ IL+ + Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L +A D ++ ++TGR S QN+P ++ Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPARD----------- 635 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + ++ +D + IE RVL+ I+G++ +AF + Sbjct: 636 --------------EGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ T K F D+V+ + R K + Y + + + Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG-----ISDYGLAQNIGISRKQ 736 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 FE + + + M + E + L R + + Sbjct: 737 AKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHR---------RRYLPQIHSRNFN 787 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 L + + +NT Sbjct: 788 LRKFAER-----------------------------------------------TAMNTP 800 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 K+ +Q + + A ++L VHDE++ E P Sbjct: 801 IQG---SAADIIKVAMIRMQ--------KALDEAH-LQAKMLLQVHDELIFEAPTAEMAQ 848 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +G L +M S A +PLK E + + Sbjct: 849 LGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877 >gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 881 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 87/631 (13%), Positives = 181/631 (28%), Gaps = 128/631 (20%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ ++L D + R + LG+ +P + + + + + Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIAF-DVLLASYLINPDENSNDLGK 418 Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + GK + + + + LF + Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L +D E L + + +G ++ + + +Q K L+E I Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEA 528 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L+ IL+ + Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L +A D ++ ++TGR S QN+P ++ Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPARD----------- 635 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + ++ +D + IE RVL+ I+G++ +AF + Sbjct: 636 --------------EGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ T K F D+V+ + R K + Y + + + Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG-----ISDYGLAQNIGISRKQ 736 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 FE + + + M + E + L R + + Sbjct: 737 AKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHR---------RRYLPQIHSRNFN 787 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 L + + +NT Sbjct: 788 LRKFAER-----------------------------------------------TAMNTP 800 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 K+ +Q + + A ++L VHDE++ E P Sbjct: 801 IQG---SAADIIKVAMIRMQ--------KALDEAH-LQAKMLLQVHDELIFEAPTAEMAQ 848 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +G L +M S A +PLK E + + Sbjct: 849 LGQLVPKIMDSAVSLA--VPLKVESHYGPTW 877 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 83/661 (12%), Positives = 180/661 (27%), Gaps = 139/661 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 W D+ E D + +++ ++ + ++ + Sbjct: 341 ICIGWGDDQQIYIAEPEVVFASDDFKNWAKEKETKKQVFDAKRTYVALRRQ---KVDITS 397 Query: 93 W-ICTSVLARTNGLPSSLKNACLALNFSEHLT-----KMEEGKALIARFCKGSIDSPPYD 146 + + + K+ + GK Sbjct: 398 ISFDILLASYLLNTKDNSKDLSEV-AMEHDYYDVSSDESVYGKGAK------IAIPEDKK 450 Query: 147 CTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 T + + + K+ + + + +L + E L ++ + G +++ Sbjct: 451 VTYDHVARKIKAIRILSKQLSDNLEKNVQTKLFD--EMELPLSIVLAEMELTGVKVNDKR 508 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 +++++E A +++ + +L + L + LF G +V ++ T Sbjct: 509 LMEMKEEFAIRLNDIEQRVYELAGEKF-NLNSPKQLGVILFEKMGYPVVKKTKTGYSTAV 567 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L + IL + + L + + G++ A +TGR S Sbjct: 568 DVLEQLKEQAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIA-QTGRLS 626 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380 QN+P +R + G K+ +D Sbjct: 627 SVDPNLQNIP------------------------IRLEEGRKIRQAFVPSHEGWKIFASD 662 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVL ++ + +AF G+DI+ +T + F ++VS E R K + + Sbjct: 663 YSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNFGI 722 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + Sbjct: 723 VY-----GISDYGLSQNL---------------------------------------GIS 738 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + K+ GV +D+ Sbjct: 739 RKEAQRFIDTYFEKYPGVKTYMEDIVREAKDKG--------------------------F 772 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + RR ++ L + R +Q + DI+ M + Sbjct: 773 VETLFHRRRYLPEINSRNFNLRSFA---ERTAI------NTPIQGSAADIIKIAMIKMDE 823 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E P+ + L +M +PLK + K Sbjct: 824 RLKESKLKATMLLQVHDELIFEAPEEEIEELKALVVEVMEGAVE--LSVPLKVDSNSGKS 881 Query: 673 Y 673 + Sbjct: 882 W 882 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 88/602 (14%), Positives = 156/602 (25%), Gaps = 139/602 (23%) Query: 88 IPSKRWICTSVLARTNGLPSS--LKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + S R T V A S + D P Sbjct: 449 VDSTRLFDTVVAAYLLDSVRSDFTDAYLAETYLHASLP-------------SAAGEDGAP 495 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 D AW + + + E L + ++ G +D Sbjct: 496 ADAVSIAARGAWLARTLREPLAAALEAQGADAIF--TKIEMPLVRVLASMERAGMYVDPA 553 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMS---E 258 + + + + + L+ I +L G + L LF G+ Sbjct: 554 RLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGYY 613 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L LIL + L+TL DGR+ T + TG Sbjct: 614 STNAKVLEDLAKNHEIVRLILEFREKTKIKSTYLDTLGPLRRHDGRVHTTYNQT-ITATG 672 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P V+ G V Sbjct: 673 RLSSSSPNLQNIP------------------------TRSELGHAVKRAFSVEEGSVFVA 708 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA ++G++ + AF GED + T A+ F P+D+V+ + R+ Sbjct: 709 IDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAARVFGVPVDEVTPQLRSRA------ 762 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 +A + + Q + + Sbjct: 763 --------------------------------------KAVNFGIVYGQQAYGLSQTLDI 784 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + A+ + GV + RR Sbjct: 785 PMAEAREMIDAYFRAYPGVRTYLDETVTFAKQTGYAETMYGRRRPIPE------------ 832 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 R+ + G+ + + + +Q + DI+ M + Sbjct: 833 -------LRIPAQRMFGERTAM------------------NHPMQGSAADIIKIAMVHVA 867 Query: 619 KNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE+ E P + + M +PL A+ + Sbjct: 868 ERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEMEGVAE--LRVPLIADASIGE 925 Query: 672 RY 673 + Sbjct: 926 TW 927 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 80/594 (13%), Positives = 156/594 (26%), Gaps = 130/594 (21%) Query: 87 DIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 ++ V A + ++ G Sbjct: 397 NVKQSSAFDVIVAAYLLNPLKSDYTYEDVAEQY--------------------LGIAGGI 436 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + +A+ F D + RL + E L + G +++ Sbjct: 437 QAELNVKCCYEAYTAFAAASVLDNKLKEAEMDRLF--YEIEMPLVFTLYEMESAGVKVEA 494 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + + ++ +L+ I ++ + L + LF + ++ T Sbjct: 495 EALKLYGDQLGEQIIQLEHQIYEMAGEEF-NINSPKQLGVILFEKLNMPHAKKTKTGYST 553 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL + + L+ + DGR+ G + TGR Sbjct: 554 AADVLEKLAEEYPIVSKILEYRQLAKLKSTYADGLAVFIGDDGRIHGKFNQTV-TATGRL 612 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R + V AD Sbjct: 613 SSTEPNLQNIP------------------------VRMELGRMIRKVFVPKEDCVFVDAD 648 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA +G++ IKA+ DI+ T ++ F+TP D+V+ QR K + + Sbjct: 649 YSQIELRVLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIV 708 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + L + + FE + + + E L G Sbjct: 709 YG-----ISSFGLSMDLSITRKEAAEYIEHYFETYPGVKKFLDDSVENAKEKGYAVTLFG 763 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + Sbjct: 764 RRRPV---------PELKSSNFMQRN---------------------------------- 780 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 G+ +N T + ++ D+ E Sbjct: 781 -------------FGERVAMNAPIQG-----TAADIMKIAMI-----DVHKE--LKKRNM 815 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + V + M +PL + + K + Sbjct: 816 KSRMILQVHDELLIEAECSEVDEVKEILRDKMENAVK--LSVPLIVDMHTGKNW 867 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 189/710 (26%), Gaps = 185/710 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAM 53 + +DIET I L + ++P + D + + Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVV 1269 Query: 54 P--------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 P L + + + V HN F+ + G + T V ++ Sbjct: 1270 PGRNELIKCEWLKNLFKSKDTVKVFHNGKFDINFL-RVYGFEFEG-PIFDTMVASKLLVA 1327 Query: 106 PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 L + + + + +Q ++ Sbjct: 1328 SRYISCKLTHVSERY--------------------LNIVLDKTQQYSDWSTLQLFEEQLL 1367 Query: 162 YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Y RD L+ L L E L + G ++D D + LQ+ Sbjct: 1368 YSARDSFVLLPLYVILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDE 1427 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNI 270 + QE +++ D+ + + + L I + N+ Sbjct: 1428 LKQEHQEISNDLYSQLNHSEINLNSQKQVLEKLQE-LKIMDRSKKKIISDTSESTLIRNM 1486 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + + ++ + L ++ R+ GA GR+S Q Sbjct: 1487 SNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQQ 1545 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +PR R C +A G K V+AD + IE R+ Sbjct: 1546 VPRD----------------------------KKFRECFVAPKGSKFVIADFSQIELRIA 1577 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A IA + I+A+ D++ T + N I++V+KE+R + K + L + + Sbjct: 1578 AEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSINGLR 1637 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 A E KL T + + + Sbjct: 1638 MYA--------------------------------------ETGYNLKLTQTEAKEIYTS 1659 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + +G+L + + Sbjct: 1660 FFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT--------------- 1698 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIV 625 + VQ S DI E M I+ Sbjct: 1699 --------------------------RSLNYPVQGTSADITKETMARLVDSVKPLNAKII 1732 Query: 626 LTVHDEIVSETPDTPYF-SVGTLCSLM-TKNPSWAKGLPLKAEGYEAKRY 673 + VHDEI+ E P+ ++ L M + K +P++A G + Sbjct: 1733 ICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 95/635 (14%), Positives = 178/635 (28%), Gaps = 142/635 (22%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L +L H++ E + GI + T++ A + Sbjct: 372 LQTWLESAA-PKYLHSAK-ETFHMLRGRGITLRGIA-HDTAIAAYLLRPGQRTYDLGDVY 428 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++ G ++ + + + + EL+ Sbjct: 429 Q-RHLQRQLTTGSDQLSLLDEDTTLVDSAAAILELAEKLTEDLRAINS------YELYAD 481 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E L + + D G +D+D++ + + IAQ+ ++ L D + Sbjct: 482 L------ELPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLS 535 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK---DLILNRLASSGSAIL 290 L + LF + ++ T + L+ +R + Sbjct: 536 SPKQLSVVLFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKST- 594 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + V DGR+ T AS TGR S QN+P Sbjct: 595 -IEGLIKTVHDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP------------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 A +RS +G L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 634 -----VRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLH 688 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 ++ F+ PID V+ E R K M GL Sbjct: 689 NFVGSRVFDVPIDDVTPELRRRVKAMSYG--------------LVYGLS----------- 723 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + +++ + GV + ++ E Sbjct: 724 -------------------AYGLSNQLGIPAGEAKKIMESYFQRFGGVKRYLDEVVEQAR 764 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 RR ++ D A R Sbjct: 765 RDGYTSTVF--------------------------GRRRYLPELTSDN---RVARENAER 795 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----------GYDIVLTVHDEIVSETPDT 639 +Q + DI+ M ++L VHDE+V E Sbjct: 796 AA------LNAPIQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPG 849 Query: 640 PYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + + +PL+ + Sbjct: 850 ELEQVQAIVEEEMDRAIT--LRVPLEVSAGTGTNW 882 >gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus] Length = 954 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 95/668 (14%), Positives = 187/668 (27%), Gaps = 141/668 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A A + L T + L +L DET +F+ + Sbjct: 404 HHAPIVGIALANERGRFFLRPETAVAD--PKFLAWLGDETKKKT----MFDSKRAAVALN 457 Query: 83 TLGIDIPSKRWICTSVLARTNGLP----SSLKNACLALNFSEH-LTKMEEGKALIARFCK 137 GI++ + +LA P + + + GK Sbjct: 458 GKGIELAGVGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKR---- 513 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + P + T A + + + ++ L++ E L + + Sbjct: 514 ----TVPDEPTLAEQLVRKAAAIWALEEPLMDELRRNEQDRLLTELEHALAGILANMEFT 569 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++D + ++ + ++ + ++ I +L + L LF + ++ + Sbjct: 570 GVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEF-NINSPKQLGTVLFDKLQLPVLKKT 628 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + IL+ + L + V G++ Sbjct: 629 KTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQA- 687 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372 ++TGR S QN+P +R + Sbjct: 688 LTQTGRLSSVEPNLQNIP------------------------IRLEEGRKIRQAFVPSEP 723 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 + AD + IE RVLA IA +D I+AF DI+ T F+ + V+ R Sbjct: 724 DWLIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEEDVTANMRRQA 783 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + G+ +QN Sbjct: 784 KAVNF--------------GIVYGISDYGLAQN--------------------------- 802 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + A GV Q ++ + + Sbjct: 803 ---LNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLH------------- 846 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR D+ + T R +Q + DI+ + Sbjct: 847 -------------RRRYLPDITSRNFNVRTFA---ERTAM------NTPIQGSAADIIKK 884 Query: 613 GMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665 M + + ++L HDE++ E P + L +M + + +PLK Sbjct: 885 AMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGRLCRLVPEVMEQAVT--LRVPLKV 942 Query: 666 EGYEAKRY 673 + + + Sbjct: 943 DYHYGPTW 950 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 91/627 (14%), Positives = 169/627 (26%), Gaps = 144/627 (22%) Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119 H + + GI++ T++ A +L + Sbjct: 377 SSDAPKYLHEAKAAWHMLAG-RGIELRGIA-HDTALAAYLLRPGQRTYALTDVSQRH--- 431 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--L 177 L + D G + E T +L + Sbjct: 432 -----------LQKSLGAATEQLSILDENP-----LVDQAGAIMELAAELTAQLQEIDSF 475 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 +D E L + + G +D D++ ++ ++ + + +L + Sbjct: 476 ELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNS 535 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL 292 L+ LF + ++ T + D +L L Sbjct: 536 PKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT-L 594 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + + DGR+ T + TGR S QN+P Sbjct: 595 EGLIKTIQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP--------------------- 632 Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 A +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 633 ---VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNY 689 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 +K F+ P+D+V+ E R K M GL Sbjct: 690 VGSKVFDVPVDEVTPELRRRVKAMSYG--------------LVYGLS------------- 722 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + + + + + +++ + GV + ++ Sbjct: 723 -----------------AFGLSQQLGIPAREAKEIMESYFERFGGVKRYLDEVVVQARKD 765 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 RR ++ D A R Sbjct: 766 GYTSTVF--------------------------GRRRYLPELNSDN---RVARENAERAA 796 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M K ++L VHDE+V E V + Sbjct: 797 ------LNAPIQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRI 850 Query: 648 CSL-MTKNPSWAKGLPLKAEGYEAKRY 673 M K +PL+ K + Sbjct: 851 LEREMDKAIE--LTVPLEVSVGVGKNW 875 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 97/662 (14%), Positives = 198/662 (29%), Gaps = 131/662 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 32 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI++ + + A + + A + + + KG+ + Sbjct: 86 WKGIELCGVSFD-LLLAAYLLDPAQGVDDVAAA--AKMKQYEAVRPDEAV--YGKGAKRA 140 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + A H+ +R ++ L + E+ L + + G ++D Sbjct: 141 VPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVD 200 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ E +A++ + +++ I +L + L + LF + ++ S+ Sbjct: 201 TKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKSKTGYS 259 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL+ + L + V D + T+ ++TGR Sbjct: 260 TSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR 319 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378 S QN+P +R + S + Sbjct: 320 LSSTEPNLQNIP------------------------IRLEEGRKIRQAFVPSESDWLIFA 355 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA +D ++AF DI+ T F D+V+ R K + Sbjct: 356 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNF- 414 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ +QN + Sbjct: 415 -------------GIVYGISDYGLAQN------------------------------LNI 431 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + GV + +++ + + Sbjct: 432 SRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH------------------- 472 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR D+ + + ++ +Q + DI+ + M + Sbjct: 473 -------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAADIIKKAMIDLN 516 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E P + L +M + + +PLK + + Sbjct: 517 ARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LRVPLKVDYHYGS 574 Query: 672 RY 673 + Sbjct: 575 TW 576 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 84/673 (12%), Positives = 170/673 (25%), Gaps = 142/673 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLRDETVMCVAHNSLFERILFK---- 81 I + +++ + L + +V V + +F Sbjct: 178 EILGMSVCFNENEAIYIPVENFITADYLGKKLSEL--SNSVSLVTFDIKESYRVFTPFEV 235 Query: 82 --KTLGIDIPSK---------RWICTSVLARTNGLPSS----LKNACLALNFSEHLTKME 126 + G + R + A + A L S Sbjct: 236 SDRDYGYSCKGEHTEDYKSKPRCFDDLIAAYLVNPNKNDYEVSDVAKEYLGLSLEKKIDL 295 Query: 127 EGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 GK I S+ C + + ++ + E Sbjct: 296 FGKKSIREADDKSVVQYACKCAFVCFKAEPLICKKLEKLQMLDLFYNI----------EM 345 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + ++ G D + + + +L++ I + + L L Sbjct: 346 PLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAGVEF-NINSPKQLGEIL 404 Query: 246 FLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F G+ ++ T +L IL + + L+ + D Sbjct: 405 FERLGLPAEKKTKSGYSTAADVLEKLAPDYPIVADILEYRGLAKLKSTYADGLAAYIEED 464 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + + TGR S QN+P Sbjct: 465 GRIHTSFNQT-ITATGRISSTEPNLQNIP------------------------MRTELGR 499 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + AD + IE R+LA ++ + I A+ G+DI+ T +K F+ P + Sbjct: 500 LIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGITASKVFHVPFE 559 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ QR K + + Y + L + FE + +++ Sbjct: 560 EVTPLQRRNAKAVNFGIVYG-----ISSFGLSQDLSISVKEAKEYMDKYFETYPGVKAYQ 614 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISAR 541 + E + G + + + + + +A Sbjct: 615 ERVIADAKEKGYSLTMFGRRRPI---------PELKASNYMMRQFGERVAMNAPIQGTAA 665 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 + + + + Y +K + KL + Sbjct: 666 DIMKIAMINV------------------YFRLKKE-------------------KLVSKL 688 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKG 660 + E+V ET V L M + Sbjct: 689 I------------LQIHD-----------ELVIETLKDEEEKVTALLTQEMERAAD--LS 723 Query: 661 LPLKAEGYEAKRY 673 +PL AE + + Sbjct: 724 VPLLAECHSGTDW 736 >gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1] gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1] Length = 880 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 96/690 (13%), Positives = 182/690 (26%), Gaps = 154/690 (22%) Query: 9 ETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63 E S +G + E L AW + T ++ + + L Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369 Query: 64 ETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL--N 117 + ++ + ID+P + T + +L + L N Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN 421 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 GK + + + + + E LF Sbjct: 422 LPLDTDDAVYGKGAKRAIP-EKTRFLEHLAKKVKVLVDSEANVMQQLKANEQEELLF--- 477 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E+ L + + RG ++ + + ++ + + L ++I +L + Sbjct: 478 ----EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF-NINS 532 Query: 238 TYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF G+ T +L IL + + Sbjct: 533 PKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYI 592 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + + DG++ ++TGR S QN+P Sbjct: 593 IGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP--------------------- 630 Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + S L+ +D + IE RVLA I+ ++ I AF G DI+ + Sbjct: 631 ---VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687 Query: 412 TYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + F + V+ R K + + Y L Sbjct: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNL------------- 729 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + + ++ G+ + + Sbjct: 730 --------------------------GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKD 763 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 RR D+ + R Sbjct: 764 KGYVETLFH--------------------------RRRSLPDINSRNFNIRQFA---ERT 794 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 + +Q + DIL M N + ++L VHDEIV E P+ ++ Sbjct: 795 AI------NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848 Query: 645 GTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M S +PL A+ + + Sbjct: 849 KELVTKTMESAIS--LSVPLIADENAGETW 876 >gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143] gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143] Length = 877 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 95/665 (14%), Positives = 186/665 (27%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D T++ + + L ++L +T + V ++ + Sbjct: 333 DLVGFAWSCGDR----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 382 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 G+++ + + + + + N + KG + Sbjct: 383 FGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAI 436 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P H+ A ++ V +L L D E+ L + + G ++ Sbjct: 437 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257 + +L++Q ++L ++I +L + L + LF G+ Sbjct: 496 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL+ + + L + + +DG++ ++T Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQ-DLTQT 613 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 709 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 710 NFGVVYG-----ISDFGLSNNL-------------------------------------- 726 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ ++ Sbjct: 727 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 769 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ + R + +Q + DIL M Sbjct: 770 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 810 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 K ++L VHDEIV E P +V L M + +PL A+ Sbjct: 811 QLDKALVEGGYQTKMLLQVHDEIVLEVPKAELAAVKVLVKQTMEEAIQ--LSVPLIADEN 868 Query: 669 EAKRY 673 E + Sbjct: 869 EGATW 873 >gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] Length = 861 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 174/662 (26%), Gaps = 142/662 (21%) Query: 27 QAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 AV+ A + D+ + D + + L + + ++++ F Sbjct: 323 DAVLYGFAVSLKDQ-TEYIELQDALADTRFLAWLKE--ENGK-------AVYDAKNFYHA 372 Query: 84 L---GIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEHLTKM-EEGKALIARFCKG 138 L GI+ ++ + A S F L K GK + Sbjct: 373 LHKNGIEFADVKF-DVMIAAFLVDGTLSDYDKLAEKYQFDRSLLKDDVFGKKGKGKL--- 428 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + R +QA L + D K L E L + + G Sbjct: 429 ---VDLDEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTI--EMPLTHVLYAMEKEG 483 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 L + ++ + + L I ++ + L L+ G+ Sbjct: 484 VVTSLSTLDEIARATSDKIDTLSAQIYEMAGMEF-NINSPKQLAQILYDELGLKAGKKR- 541 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L L+L LS+ V DG++ ++TG Sbjct: 542 STAADVLEKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLKDGKIHTIFNQIQ-TQTG 600 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+ +R +AS G L+ Sbjct: 601 RLSSSEPNLQNI------------------------SVRDEEGKEIRKAFVASEGHVLLS 636 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA +A E+ I AF +G DI+ T + F+ D V R K + Sbjct: 637 ADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVDANMRRSAKTVNF- 695 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G S+ + Sbjct: 696 -------------GIVYGQSDFGLSEQ------------------------------LGI 712 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + A + + + + Sbjct: 713 SRKEAHAFIDKYFASYPNIKSFMDSTIQFCEENGYVKTLFN------------------- 753 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 RR ++ + + +Q + D++ M + Sbjct: 754 -------RRRYIKEISDKNYMMREFGKRA---------AMNAPIQGSAADLIKLAMIHIF 797 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAK 671 + ++L +HDE++ + + + ++ M + +PL AE K Sbjct: 798 ERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAMK--LRVPLIAEANIGK 855 Query: 672 RY 673 + Sbjct: 856 SW 857 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 92/632 (14%), Positives = 172/632 (27%), Gaps = 139/632 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L Q+L + H + + GI++ T++ A Sbjct: 353 AALAQWL-NSDAPKYFHEAKAAFHMLAG-RGIELRGIA-HDTAIAAYLLRPGQRTYELSD 409 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 R K ++ + + + E T++L Sbjct: 410 VY----------------QRHLKKTLGQASDQLSLLDDTSLVDQAAAIMELAAELTKQLQ 453 Query: 175 --KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +D E L + + G +D++++ + ++ + + +L Sbjct: 454 AIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDS 513 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGS 287 + L+ LF + ++ T + D +L Sbjct: 514 LNLNSPKQLQAVLFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHREYQKM 573 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L L + V DGR+ T AS TGR S QN+P Sbjct: 574 KTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP---------------- 615 Query: 348 NRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 A +RS I G L+ AD + IE RV+A ++ + I+A+ GE Sbjct: 616 --------VRTEAGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGE 667 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ +K F+ P+D+V+ E R K M GL Sbjct: 668 DLHNYVGSKVFDVPVDEVTPELRRRVKAMSYG--------------LVYGLS-------- 705 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + + + + GV + ++ E Sbjct: 706 ----------------------AFGLSQQLGIPAREAKEIMENYFERFGGVKRYLDNVVE 743 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR ++ D + Sbjct: 744 KARKDGYTATVF--------------------------GRRRYLPELNSDNRLARENAER 777 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYF 642 +Q + DI+ M ++L VHDE+V E Sbjct: 778 A---------ALNAPIQGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEAD 828 Query: 643 SVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL+ K + Sbjct: 829 EVKKILEREMDSAIE--LTVPLEVSAGAGKDW 858 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 99/710 (13%), Positives = 187/710 (26%), Gaps = 185/710 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------EQSAMP 54 + +DIET I L + ++P + D + ++ Sbjct: 1220 KAVGVDIETTGLDHNTN----------QIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVV 1269 Query: 55 ---------SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 L + + + + V HN F+ + G + T V ++ Sbjct: 1270 PGRNELIKCEWLKKLFKSKETVKVFHNGKFDINFL-RVYGFEFEG-PIFDTMVASKLLVA 1327 Query: 106 PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 L + + + + +Q ++ Sbjct: 1328 SRYISCKLTHVSERY--------------------LNIVLDKTQQYSDWSTLQLFEEQLL 1367 Query: 162 YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Y RD L+ L L E L + G ++D D + LQ+ Sbjct: 1368 YSARDSFVLLPLYVILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDE 1427 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNI 270 + QE +++ + + + + L I + N+ Sbjct: 1428 LKQEHQEISNTLYSQLNQSEINLNSQKQVLEKLQE-LKIMDKSKKKIISDTSESTLIRNM 1486 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + + ++ + L ++ R+ GA GR+S Q Sbjct: 1487 SNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQLGAES-GRFSCDGPNLQQ 1545 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +PR R C +A G K V+AD + IE R+ Sbjct: 1546 VPRD----------------------------KKFRECFVAPKGSKFVIADFSQIELRIA 1577 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A IA + I+A+ D++ T + N I+ V+KE+R + K + L + + Sbjct: 1578 AEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSINGLR 1637 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 A E KL + + + Sbjct: 1638 MYA--------------------------------------ETGYNLKLTQNEAKEIYTS 1659 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + +G+L + + Sbjct: 1660 FFNNFKGILNWHNSVKN------SRPTMVRTLGNRLSVFESFSFT--------------- 1698 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIV 625 + VQ S DI E M I+ Sbjct: 1699 --------------------------RSLNYPVQGTSADITKETMARLVDLVKPLNAKII 1732 Query: 626 LTVHDEIVSETPDTPYF-SVGTLCSLM-TKNPSWAKGLPLKAEGYEAKRY 673 + VHDEI+ E P+ ++ L M + K +P++A G + Sbjct: 1733 ICVHDEIILEVPEDNAEKALKMLIDTMVKSGEKYLKKVPVEAMGSIGDSW 1782 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 88/656 (13%), Positives = 174/656 (26%), Gaps = 130/656 (19%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + A A + + + + LL+Y+ + + +++ + + Sbjct: 323 DATLYGFAIAHGNN-CEYISLEDAKNDTA-LLEYIHTDN-GKIVYDAKNVYHAWHRNHIA 379 Query: 87 DIPSKRWICTSVLARTNGLPSS-LKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPP 144 +P R + A S F + GK K + Sbjct: 380 FVPVHR--DVMLEAFLLDGMISDYDKLAEKYAFDCTLSKEDVFGKK-----GKPKLVVEE 432 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 A E D E ++ K L E + + + G ++ Sbjct: 433 DAAAYAMQCAENLANIEQQLFD-ELEQKDMKELYDTI--EMPVVEVLYAMEKEGVHTSVE 489 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + ++ E ++ + L+ I + + L + L+ G+ T + Sbjct: 490 TLQEIAEATGKKIEALNAQIYEYAGMEF-NINSPKQLAVVLYDELGLPCGKKR-STGADV 547 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L L+L + LS+ + DG++ ++TGR S Sbjct: 548 LEKLKPVHPIISLLLEQRKYQKIYSTYAVGLSKHILKDGKIHTIFNQIQ-TQTGRLSSSE 606 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+ +R +AS L+ AD + I Sbjct: 607 PNLQNI------------------------SVRDEEGKVIRKAFVASPQHTLMSADYSQI 642 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA +A E I+AF G DI+ T + F+ D V R K + Sbjct: 643 ELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNF------- 695 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G S+ + + + Sbjct: 696 -------GIVYGQSDFGLSEQL------------------------------GITMKEAK 718 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + A + + D Sbjct: 719 RFIDKYFASYPNIKTFMDDTIAFCEENGYVKTMF-------------------------- 752 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RR ++ + + +Q + D++ M + Sbjct: 753 GRRRYIKEINDKNYMMREFGKRA---------AMNAPIQGSAADLIKLAMVHIYQTMKEK 803 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 K ++L +HDE++ + D ++ + M + +PL AE K + Sbjct: 804 KVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQAMQ--LRVPLIAEASFGKTW 857 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 89/653 (13%), Positives = 202/653 (30%), Gaps = 148/653 (22%) Query: 38 DDEPVKLWDRTEQSA-----MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 ++E V + + + + L + D+ + ++H+ ++ +K DI +K Sbjct: 356 NEEKVYVVNVNKIKNENFHKLLELLKKLFEDKNIKKISHDIKNVYVVLRKY---DIDAKN 412 Query: 93 W-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + T + + S L ++ K I Sbjct: 413 FIFDTKIASYLLEPSKS----------DYILREIILEKLSINIDDSDEECKI-------- 454 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + + Y K E + L + E L + ++ G+++D D + ++ E Sbjct: 455 -KETYCIKEIYEKLQKEIKEANMEELF--YNVELPLTKVLASMECEGFKVDKDRLTEIGE 511 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268 E K L+++I KL + + L LF + ++ ++ T +L Sbjct: 512 KFKAEIKMLEKEIHKLAGEDF-NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKL 570 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + I++ + + L + DG++ + + TGR S Q Sbjct: 571 KDSHPIISKIIDYRQITKLDSTYVEGLKHVIDEDGKIHSSFNQTV-TTTGRLSSTEPNLQ 629 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P +R +A+ + AD + IE R Sbjct: 630 NIP------------------------IKHEMGREIRKVFVANNEESVIFSADYSQIELR 665 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA IA ++ I AF + +DI+ T ++ F P+++V+ R+ K + + Sbjct: 666 VLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIV------- 718 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ + + + Sbjct: 719 -------YGIG------------------------------AFSLSKDINVSRKEAKEYI 741 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + +++ V + D+ + ++D + +R+ Sbjct: 742 DTYFSRYPNVKKYIDDIIN--------------------------KSEQDGFVTTIMNRK 775 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD---- 623 +++ + + +L +Q + DI+ M + + Sbjct: 776 RYIPEIQSRNRIVRSFGERL---------AMNTPIQGSAADIIKLAMVHVYEELIKRNLK 826 Query: 624 --IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ V + M + +PL+A+ + Sbjct: 827 STLILQVHDELILNVYKDELEEVKQMVVEKMEGVMNLL--VPLEADVNIGITW 877 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 85/597 (14%), Positives = 162/597 (27%), Gaps = 142/597 (23%) Query: 91 KRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 W S+ A + L K Sbjct: 395 GNWQDLSLAAYLLNPLKDSYDYDDLSRDYLGLLLPSEKEL---------------GDSER 439 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + + + R + REL++ + E L + + G +D + + Sbjct: 440 PGKYRAFLSLLSGKKLLSRLDKKERELYR------EIELPLVFTLHEMEESGILVDREAL 493 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 L + ++ ++ E I + + L LF G+ ++ T Sbjct: 494 LSYGAELREKIGEIRERIYREAGEEF-NLNSPQQLGQILFEKLGLPGGRKTKTGYSTAAD 552 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L + IL S L + DGR+ G + TGR S Sbjct: 553 VLEKLSEENQLASDILEYRTYSKLNSTYAEGLLSWIREDGRIHGHFNQMV-TATGRISST 611 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R I G + AD + Sbjct: 612 DPNLQNIP------------------------IRTEMGRRFRRVFIPKEGSIFIDADYSQ 647 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E R+LA ++G++ I+A+ N +DI+ T ++ F+ P+ +V+ + R K + Sbjct: 648 VELRILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNF------ 701 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + Sbjct: 702 --------GIVYGIS------------------------------AFGLSEGLSISRQEA 723 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + + GV + E Sbjct: 724 KEYIERYFETYPGVKKFLDGEVELARKQGYVRTIF------------------------- 758 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 R+ D+ + ++ + +Q + DI+ + M ++ Sbjct: 759 -GRKRPVPDISSSNFARRSFGERV---------AMNSPIQGSAADIMKKAMNEVSRALKA 808 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 IVL VHDE++ ETP+ V L L M +PL A+ + + Sbjct: 809 GAFRARIVLQVHDELLLETPEKEADQVEELLILSMQNAAK--LRVPLIADAKRGRNW 863 >gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] Length = 889 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 95/665 (14%), Positives = 187/665 (28%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + + ++L +T + V ++ + Sbjct: 345 DLVGLAWSCGDK----LYATDKLELLQEPIFKEFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 LG+++ + + + + + N + KG + Sbjct: 395 LGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAI 448 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P H+ A ++ V +L L D E+ L + + G ++ Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257 + +L++Q ++L ++I +L + L + LF G+ Sbjct: 508 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL+ + + L + + DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ ++ Sbjct: 739 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ + R + +Q + DIL M Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 K ++L VHDEIV E P + +V L M + +PL A+ Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKALVKQTMEEAIQ--LSVPLIADEN 880 Query: 669 EAKRY 673 E + Sbjct: 881 EGATW 885 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 98/634 (15%), Positives = 176/634 (27%), Gaps = 136/634 (21%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLA 115 +L+ L + H+ L + L + + T++ A Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDG------- 419 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQL-----FGEYCKRDVEA 169 ++E K I F + + Y A A Q +C Sbjct: 420 ------SYELE--KLGITYFNQEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGAL 471 Query: 170 TRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L RL D E L + + G +D + + +++ + + Sbjct: 472 KKVLAPRLEELGMHQLYYDIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAE 531 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L G + T L LF G+ V ++ T +L D IL Sbjct: 532 IYELA-GETFNINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILE 590 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ L + ++ DGR+ + + TGR S QN+P Sbjct: 591 YRQYTKLKSTYVDGLGKVIAPDGRIHTSF-QNTVTATGRLSSTEPNLQNIP--------- 640 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GK LV AD + IE R+LA IAG++ I+ Sbjct: 641 ---------------VRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIE 685 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF GEDI+ T A+ F P+D+V+K R+ K + + Y + + + Sbjct: 686 AFRTGEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYG-----ISAFSLSQDIGVP 740 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + F + ++ + ++ L G R + Sbjct: 741 TYEAKEYIEKYFARFSGVHAYMTDVVNRAKTDGYVSTLFGR---------RRWLPELKSS 791 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + V +L V Sbjct: 792 NFNTRSFGERVALNMPIQGTAADI---------------------MKLAMLHVHSRLREE 830 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 + ++ E P+ Sbjct: 831 GLQARLI---------------------------LQVHDE-----------LIVECPEEE 852 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +V L M A +PL A+ + + Sbjct: 853 AETVKALLSREMESVAQLA--VPLIADAAAGRSW 884 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 90/642 (14%), Positives = 162/642 (25%), Gaps = 132/642 (20%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 L+ T+ + S L L D +V NS E +F K I++ + Sbjct: 344 GEGNLYIFTDINEAISILKPILTDISVKKYILNSK-ECTVFLKKHDIELEGL-VFDPLLA 401 Query: 100 ARTNGLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 L L+ S L + + L F + ++ + Sbjct: 402 YYLLKPSGKLPGLRDLLDQELSLSLPEDIKEDNLYLVFMDNIFKLAEGMVPKLEDMELIE 461 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 LF +D E L + + G ++D + + L +E Sbjct: 462 LF---------------------NDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEEL 500 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 L+ I +L + L LF G+ ++ ++ T +L Sbjct: 501 NGLESKIHELAGEKF-NINSPKQLGGILFEKLGLPVIKKTKTGYSTGAKVLEKLEDKHPI 559 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI ++ L ++ D GRL + + TGR S QN+P Sbjct: 560 IPLISEYRQLMKLKSTYVDALPPMINPDTGRLHTSFNQMV-TATGRLSSTEPNLQNIP-- 616 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWI 392 +R I L+ AD + IE RVLA I Sbjct: 617 ----------------------VRTDEGREIRRAFITENEDWVLLAADYSQIELRVLAHI 654 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ AF G+DI+ T ++ F D+V+ R KV+ + Y Sbjct: 655 SDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVINFGIAYGMSP-----YG 709 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L + + + FE + + + + + + R Sbjct: 710 LARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYVTTIFNR---------RR 760 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + +L Sbjct: 761 YIPEINSRNYHRRSFAERTAINTPIQGTAADI---------------------MKLAMIK 799 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 V + + DE+ Sbjct: 800 VYNRLKENGSPARI---------------------------LLQVH-----------DEL 821 Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + E P + + M K +PL + Sbjct: 822 ILEVPREDLTEMARIVKSEMEKAVD--MKVPLVVNLESGPNW 861 >gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160] gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1] gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408] Length = 880 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 92/670 (13%), Positives = 177/670 (26%), Gaps = 126/670 (18%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + G+ Y E A + E V L+ + D L D+ + + ++ E Sbjct: 349 KEAGISIYKEN-DAMWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 407 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIA 133 L I +K S+ A + +K E Sbjct: 408 VKEHLSHLTIHEMTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHP 467 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 G + + + + E R + E Sbjct: 468 MVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR-----EIEIPTMFALHD 522 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG +D + + + ++L E I K + L + LF ++ Sbjct: 523 MEVRGIHVDSKALKGYGDQLVGRIEELQESIYKEAGEEF-NINSPKQLGVVLFDHMKLEG 581 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ T +L +IL + + L+ + D R+ G Sbjct: 582 AKKTKTGYSTSVEVLEKIEHLYPIIPMILEYRQLTKLKSTYADGLANFIQDDQRIHGKFN 641 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R + Sbjct: 642 QT-ITATGRISSTEPNLQNIP------------------------IRMELGRAIRKVFLP 676 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + AD + IE RVLA ++ ++ I A+ +DI+ T ++ F P+D+V+ QR Sbjct: 677 EEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRR 736 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + GL Sbjct: 737 DAKAVNF--------------GIIYGLS------------------------------AF 752 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + K+ + + A + V + E + R + Sbjct: 753 GLSQDLKISRKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSS 812 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + G+ + + +Q + DI+ Sbjct: 813 NFMQRN-----------------FGERVAM------------------NSPIQGTAADII 837 Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 M + ++L +HDE++ ET + V + M S +PL Sbjct: 838 KIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--LRVPL 895 Query: 664 KAEGYEAKRY 673 + + + Sbjct: 896 NIDIEQGASW 905 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 105/759 (13%), Positives = 196/759 (25%), Gaps = 193/759 (25%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD--EPVKLWDRTEQS-------AMPSDL 57 D ET S +P A + W E V ++ + L Sbjct: 386 DTETTSLEP----------RDAELVGIGCCWGKNMEDVAYIPTGHKTDKNLDKVTVLESL 435 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----------------- 100 L V NS F+R++F + GI + + T + + Sbjct: 436 KPVLESSEYPKVFQNSKFDRLVF-RCQGIKLTGV-FFDTMLASYVLNPEAKHSLEEIYIR 493 Query: 101 RTNGLPSSL----KNACL---ALNFSEHLTKMEEG------------------------- 128 + +L + G Sbjct: 494 YLRNVGINLQSYQDVVSKNQTIADLDILKVADYCGTQVWVTFQLVEKLRTELEKADKNKS 553 Query: 129 --KALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 K+L P + ++ + E E+ KR D + Sbjct: 554 TEKSLYRLLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIEKRAFKTVDSQ 613 Query: 185 -------RDLWLLDQTINDRGY--------RIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++ +D I + KL + Q + ++ I ++ Sbjct: 614 VLQKYLQTEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLENIESQINQVET 673 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHS---NITQLAKDLILNR 281 + + L LF I + T L D ILN Sbjct: 674 RDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTDVVALEKLQTEPEHHPIIDEILNH 733 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + V SD R+ + TGR S QN+P Sbjct: 734 RTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQ-TDTGRLSSSEPNLQNIP--------- 783 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + LV AD + IE R+LA ++ E I+ Sbjct: 784 ---------------IGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIE 828 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ N +D++ T F Sbjct: 829 AYKNNQDVHTVTAKLLF------------------------------------------- 845 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + +S + + + + A K+ + + ++ ++ V Sbjct: 846 ---EKEEISSEERRVGKTINFGVIYGMGAQKLARSVKITVKESKQFLEKYKQQYSLVFAY 902 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + L + + RR + +R K ++ Sbjct: 903 LEKLKKQAIAKGYVETILGRRRYFELESKTIRDLKDKEP-----------EEINLQELKF 951 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSET 636 + +Q++R + +Q S DI+ M K ++L VHDE+V E Sbjct: 952 SQNDAQILRSA------ANSPIQGSSADIIKIAMIRLNKILTNYQTKLLLQVHDELVFEV 1005 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 P + + + S M + +PL + + K + Sbjct: 1006 PPSELEKMQQLIKSTMENAVT--LKVPLIVDIHGGKNWM 1042 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405] Length = 880 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] Length = 881 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 86/631 (13%), Positives = 180/631 (28%), Gaps = 128/631 (20%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ ++L D + R + LG+ +P + + + + + Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIAF-DVLLASYLINPDENSNDLGK 418 Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + GK + + + + LF + Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L +D E L + + +G ++ + + +Q K L+E I Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKNMGTEFSQSIKVLEEKIYGEA 528 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L+ IL+ + Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L +A D ++ ++TGR S QN+P ++ Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPARD----------- 635 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + ++ +D + IE RVL+ I+G++ +AF + Sbjct: 636 --------------EGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKH 681 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ T K F D+V+ + R K + Y + + + Sbjct: 682 GVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYG-----ISDYGLAQNIGISRKK 736 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 FE + + + M + E + L R + + Sbjct: 737 AKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHR---------RRYLPQIHSRNFN 787 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 L + + +NT Sbjct: 788 LRKFAER-----------------------------------------------TAMNTP 800 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 K+ +Q + + A ++L VHDE++ E P Sbjct: 801 IQG---SAADIIKVAMIRMQ--------KALDEAH-LQAKMLLQVHDELIFEAPTAEMAQ 848 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +G L +M S +PLK E + + Sbjct: 849 LGQLVPKIMDSAVSLV--VPLKVESHYGPTW 877 >gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] Length = 876 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 93/660 (14%), Positives = 174/660 (26%), Gaps = 135/660 (20%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 A I A ++ + + SDLL Y + + + G Sbjct: 336 MHATINGFAL-YNGKQAVYISLVDAKK-DSDLLAYFSSDMPHKYGFDVKRNLH-LAENEG 392 Query: 86 IDIPSKRWICTS-VLARTNGLPSSLKNAC---LALNFS-EHLTKMEEGKALIARFCKGSI 140 + + + + A SL F + GK K ++ Sbjct: 393 LTLN---FHDDMMLAASLVDS--SLTTTAKIIERYGFENTVSYEDVYGK-----PTKPNL 442 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 A +F Y + + ++L + E L + + G R Sbjct: 443 IIDEEKQCMYACAFARNIFRLYAEITPKLQEYKMEKLY--YEMEMPLTTVLYHMEREGIR 500 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 D+D++ ++ + + ++I L + L LF G+ T Sbjct: 501 CDIDILDRIATETMAKISEAQKEIYVLAAKEF-NINSPKQLAEVLFDDLGLPTGKKR-ST 558 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L D IL S L + + DG++ A++TGR Sbjct: 559 AAGELEKLQGKSPIIDYILEYRKLSKIYSTYAEGLKKYIQQDGKIHTIYNQS-ATQTGRL 617 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+ +R + NG L+ +D Sbjct: 618 SSSEPNLQNI------------------------SVRDEQGKEIRKAFLPENGCVLISSD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 IE R+LA +A E I+AF G DI+ T F+ P D+++ + R K + + Sbjct: 654 YHQIELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVNFGIV 713 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ S+ + + Sbjct: 714 --------------YGISDFGLSEQLGVSRY----------------------------- 730 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + A + + + + + Sbjct: 731 -EAHDFIERYYAAYPKIRIYMDQIVKDCEEKGY--------------------------V 763 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618 RR ++ + +Q + D++ M + Sbjct: 764 ETLCGRRREIPEIHDKNHATREFGKRA---------AMNAPIQGSAADLIKLAMIHIDQM 814 Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ P + L M +PL AE + Sbjct: 815 MKDAKVKSKMILQVHDELIFNVPKEEVDVMTKLINDGMVNAMH--LQVPLTAECSIGSDW 872 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72] Length = 880 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 91/658 (13%), Positives = 185/658 (28%), Gaps = 135/658 (20%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFE 76 G A +++ I A ++ E + L L + + + E Sbjct: 328 AGFDAQKQESYIHGVAVSFSAEDTAYVPMSGFVSGRYLKVSLMELAEAGLAIWTYGLK-E 386 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLAL--NFSEHLTKMEEG-KA 130 ++ + + + ++ A +S + + G K Sbjct: 387 QL---RAVPYS-RKTKISDVAIAAYLLDPLASDYPFDTLAAQYVKDVLILSAEEVLGTKK 442 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 ++ F + Y A + G K + + R+L+ + E L Sbjct: 443 EVSWFEVPEETAAMYAGEIAYTALSCGP-GLVEKLEAQGMRKLYD------EVEMPLVYT 495 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + + G R+ D + E + + +L+ I + + L + LF Sbjct: 496 LCHMEEAGIRVLPDELETYGENLKEGIARLETSIYEAAGEKF-NINSPKQLGVILFEKMQ 554 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 + ++ T +L + IL + + L+ +++DGR+ Sbjct: 555 LPGGKKTKTGYSTAADVLEKLAVDVPFVADILEYRQLTKLKSTYADGLAACIAADGRIHT 614 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + + TGR S QN+P +R C Sbjct: 615 TFKQT-ITATGRISSTEPNLQNIP------------------------TRIELGRQIRKC 649 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + +G V AD + IE RVLA ++G++ I+A+ + EDI+ T ++ F+ P+ +V+ Sbjct: 650 FVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITASQVFHVPLSEVTPL 709 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + G+ Sbjct: 710 MRRNAKAVNF--------------GIVYGIS----------------------------- 726 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + ++ + G+ + L E Sbjct: 727 -AHGLSEDLNISRKEAQEYIDSYYEAYPGIRGYLESLVETAKKKEYSETYY--------- 776 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR ++ R +Q + Sbjct: 777 -----------------GRRRPMPELSSGNFMQRQFG---ERVAKNAP------IQGTAA 810 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658 DI+ M + ++L VHDE++ ET + V + M A Sbjct: 811 DIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILREEMIGATDLA 868 >gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] Length = 876 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 87/684 (12%), Positives = 180/684 (26%), Gaps = 131/684 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 IET S + + + ++ + + ++L+ Sbjct: 302 IET-SFDNVDFTSLKEATIHFELDGGNYLRNNILKFSLFTGEKHIVINADDIINYAELVS 360 Query: 60 YLRDETVMCVAHNSL--FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L + V +++ + + LGIDI + + + + ++ + ++ Sbjct: 361 WLENPNTKKVVYDAKKTY---VASHRLGIDIQNISF-DIMLASYIIDPSRTISDVQSVVS 416 Query: 118 FSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +F D ++ D + Sbjct: 417 LYGQSFVKDDVSIYGKGKKFKVPEDDVL----NPYVASITDAIYFAKPNMDKQLEEYNQV 472 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + + + G D+ + ++++ I ++ L +I + Sbjct: 473 ELLADL--ELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDF-NI 529 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF + ++ ++ T +L D IL S + Sbjct: 530 NSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYV 589 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S D R+ A +TGR S QN+P Sbjct: 590 EGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP--------------------- 627 Query: 353 IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R S ++ AD + IE RVLA I ++ +AF NG+DI+ Sbjct: 628 ---VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTA 684 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T K F D+V R K + + Y L + + Sbjct: 685 TAMKVFGVEADQVDSLMRRQAKAVNFGIVYG-----ISDYGLSQSLGITRKKAKAFIDDY 739 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC- 530 + + + + + L+ R + +L Sbjct: 740 LASFPGVKQYMSDIVKDAKALGFVETLLHR---------RRYIPDITSRNFNLRGFAERT 790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + SA + + + Sbjct: 791 AMNTPIQGSAADIIKLAMVKF--------------------------------------- 811 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 K+ E QA + E++ E P + S + Sbjct: 812 ---AHKMKETTYQA------KL-LLQVHD-----------ELIFEVPKSEVDSFSEFVEE 850 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PLK + + Sbjct: 851 IMENALQ--LDVPLKVDSSYGATW 872 >gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] Length = 889 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 97/665 (14%), Positives = 189/665 (28%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + D L +L +T + V ++ + Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQDPILKDFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 G+D+ + + + + + N + KG + Sbjct: 395 FGLDLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY----LVDDETFYGKGVKKAI 448 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRID 202 P T H+ A ++ V + +L L + E+ L + + G ++ Sbjct: 449 PERETFLEHL-ARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMS 257 + +L++Q +KL ++I +L + L LF G+ + Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPIEYTKKTKTG 566 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL+ + + L + + +DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYMQ-DLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ ++ Sbjct: 739 -GISRKDAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ + R + +Q + DIL M Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 K ++L VHDEIV E P + ++ L M + +PL A+ Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKKLVKQTMEEAIQ--LSVPLIADEN 880 Query: 669 EAKRY 673 E + Sbjct: 881 EGVTW 885 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 106/684 (15%), Positives = 195/684 (28%), Gaps = 137/684 (20%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMC 68 S + G +T A A D+ D + L +L D Sbjct: 340 TSRTGIIFRGT-WGRGTGELTGIALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQK 398 Query: 69 VAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTK 124 V H L G D+ T++ A L + + E Sbjct: 399 VVHEVK--GPLLAVWARGWDLAGV-VSDTALAAYLALPGQRSFDLADLAVRYLRRELKDS 455 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 E L S + + A+ ++A + D + L+ E Sbjct: 456 AAEETQLTLDGMGPSEEDLAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGI--E 513 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + RG DLD + +LQ A + + + + L+ Sbjct: 514 LPLTFVLARMEQRGIAADLDFLHELQREFADGVAAAAAEAYAVIGREV-NLGSPKQLQAV 572 Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 LF G+ + L ++L+ + L +L + + ++ L Sbjct: 573 LFDELGLPKTKKIKSGYTTDAEALTNLLAQTGHPFLEH--LLRHRDVTRLRTV-IDGLIP 629 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V GR+ T Q A TGR S QN+P Sbjct: 630 MVDDGGRIHTTFQQTIA-ATGRLSSIDPNLQNIP------------------------IR 664 Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + +G + L+ AD + IE R++A ++G+ I+AF +GED++ ++A Sbjct: 665 TAEGRRIRQAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRA 724 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 ++ PI+ V E R K M + GL Sbjct: 725 YDIPIEDVDPEMRRRIKAM--------------SYGLAYGLS------------------ 752 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 A + ++ A+ + G+ + + + Sbjct: 753 ------------AYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDARQTGYTET 800 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 ++ RR D+ D ++ Sbjct: 801 TL--------------------------GRRRYLPDLTSDNGQRRQMAERM--------- 825 Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +Q + D++ M + ++L VHDE+V E ++ TL Sbjct: 826 ALNAPIQGSAADVIKVAMLRVEQAIADEGLRSRMLLQVHDELVLEVAPGEREALETLVRR 885 Query: 651 -MTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ + + Sbjct: 886 EMAGAAQ--LSVPLEVSVGFGRTW 907 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 107/662 (16%), Positives = 182/662 (27%), Gaps = 132/662 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A D T+ + L +L D AH+ + LG + Sbjct: 419 VAGIALAPPKGKAAWIDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALA-ELGFTL 477 Query: 89 PSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 T++ A L + L E + Sbjct: 478 AGVT-SDTALAAYLALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLD-VEVEGVEES 535 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + V+A + D + R RL+ D E L + + G D + Sbjct: 536 AEAEVDVVRARAVGELADALDGDLERRSAARLLR--DIELPLLTVLAGMERAGIAADAEY 593 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLK 262 + LQ E K+ E ++ + L+ LF G+ T Sbjct: 594 LADLQSQYGTEVTKVVEAAHEIVGRPF-NLGSPKQLQQILFEELGLPKTKKIKTGYTTDA 652 Query: 263 SILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 L+ L L+ +R + + +L + GR+ T A TGR Sbjct: 653 DALAWLATNSEHPLIPTLLRHRDVARLK--TVVESLLPMIDDAGRIHTTFNQMIA-ATGR 709 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378 S QN+P +R + G L+ Sbjct: 710 LSSTDPNLQNIP------------------------IRTAEGRQIRRAFVVGPGYETLLT 745 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G+ I+AFA+GED++ A+AFN P+ +V E R K M Sbjct: 746 ADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAM--- 802 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + GL A + + Sbjct: 803 -----------SYGLAYGLS------------------------------AYGLATQLGI 821 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 +A+ A+ GV + + + + Sbjct: 822 HPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETIL-------------------- 861 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR D+ D S ++ +Q + DI+ M Sbjct: 862 ------GRRRYLPDLTSDNSQRRQMAERM---------ALNAPIQGSAADIIKIAMLGVD 906 Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE+V E L M + +PL+ Sbjct: 907 RGLRDAGLRSRLLLQVHDELVLEIAPGERERAEALVRAEMANA--YTMSVPLEVSVGSGH 964 Query: 672 RY 673 + Sbjct: 965 TW 966 >gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] Length = 880 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLAKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----- 251 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQVENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLSLEYT 551 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNY--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 91/602 (15%), Positives = 161/602 (26%), Gaps = 138/602 (22%) Query: 83 TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 G+ + + T + L S + Sbjct: 360 AKGVGVRGAHF-DTYLAGYLAKPGLGSYDLDALATERGIS----------------DVEA 402 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + P A + +A + E L + + G Sbjct: 403 SHADPVVREAARRAALVRALAPRL----DAELREMGLSRLYYEVELPLADVLAEMERVGM 458 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDM 256 +D + ++ I + +L+E I + + L LF G+ Sbjct: 459 PVDARTLEEVGREIERRIAELEEAIFEDVGHPF-NIGSPKQLSEVLFEELGLPPVRRTKT 517 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L + + I+ + + L + V DGR+ TL + Sbjct: 518 GYSTDAKVLQQLALEHPIAERIIAWRELAKLKGTYVEGLLKLVGEDGRIHTTLN-QTTTA 576 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P +R AS G+ L Sbjct: 577 TGRISSDSPNLQNIP------------------------VRTETGMRIRDAFTASPGRLL 612 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 VVAD + IE R+LA ++ E ++AF NGEDI+ T A+ F+ + V+ E R K++ Sbjct: 613 VVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESVTPELRRRAKMVN 672 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L + Sbjct: 673 FGILYG-----ISGYGLATRLGNVHPA--------------------------------- 694 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + +H V + + + Sbjct: 695 -----EADRYIQRYFERHPRVTEFIRKSLAEAEELGYATTLF------------------ 731 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR +++ + R VQ + DI+ M + Sbjct: 732 --------GRRRYVPELRNKNKNVR---KLGERIAFNAR------VQGSAADIIKVAMVD 774 Query: 617 ATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671 G D+++ VHDE+V + V L M PL+ E + Sbjct: 775 LAPRLGPLGADMLMQVHDELVFDVDRDRVEEVAALAAERMVAAYDLDP--PLEVEVKAGE 832 Query: 672 RY 673 R+ Sbjct: 833 RW 834 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 91/627 (14%), Positives = 169/627 (26%), Gaps = 144/627 (22%) Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119 H + + GI++ T++ A +L + Sbjct: 332 SSDAPKYLHEAKAAWHMLAG-RGIELRGIA-HDTALAAYLLRPGQRTYALTDVSQRH--- 386 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--L 177 L + D G + E T +L + Sbjct: 387 -----------LQKSLGAATEQLSILDENP-----LVDQAGAIMELAAELTAQLQEIDSF 430 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 +D E L + + G +D D++ ++ ++ + + +L + Sbjct: 431 ELYTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNS 490 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAILKL 292 L+ LF + ++ T + D +L L Sbjct: 491 PKQLQAVLFDTFDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTT-L 549 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + + DGR+ T + TGR S QN+P Sbjct: 550 EGLIKTIQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP--------------------- 587 Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 A +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 588 ---VRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNY 644 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 +K F+ P+D+V+ E R K M GL Sbjct: 645 VGSKVFDVPVDEVTPELRRRVKAMSYG--------------LVYGLS------------- 677 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + + + + + +++ + GV + ++ Sbjct: 678 -----------------AFGLSQQLGIPAREAKEIMESYFERFGGVKRYLDEVVVQARKD 720 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 RR ++ D A R Sbjct: 721 GYTSTVF--------------------------GRRRYLPELNSDN---RVARENAERAA 751 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M K ++L VHDE+V E V + Sbjct: 752 ------LNAPIQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRI 805 Query: 648 CSL-MTKNPSWAKGLPLKAEGYEAKRY 673 M K +PL+ K + Sbjct: 806 LEREMDKAIE--LTVPLEVSVGVGKNW 830 >gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 939 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 77/624 (12%), Positives = 155/624 (24%), Gaps = 128/624 (20%) Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + + + ++ L + I + A ++ + Sbjct: 429 KPFWASKDHRKLFFDAK-SLWLLARREDTVIEGID-GDGLLGAYLLDPLANRYSLAR--- 483 Query: 118 FSEHLTKMEEGKALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 G + + + + H+ + R Sbjct: 484 ----SAHDWIGWKVDTEAGRSVLPPEEGARAAAALFHMTPVMEARLGEEGLCALYR---- 535 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 D E L + + G +++ ++ ++ + + ++L DI L G + Sbjct: 536 ------DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLA-GESFNI 588 Query: 236 RQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 T LF G+ T +L +L + Sbjct: 589 NSTQQFGKILFEKLGLPVIKRTKTGYSTDVEVLEELADRHPIVPKVLEYRQLMKLKSTYV 648 Query: 293 NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + DGR+ + + TGR S QN+P Sbjct: 649 EGLLPLIDGEDGRIHTSFNQAV-TATGRLSSTEPNLQNIP-------------------- 687 Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R A + L+ AD + IE R+LA ++G+ AFA +DI+ Sbjct: 688 ----VRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHT 743 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T ++ F P++ V+ E R K + + Y L + + Sbjct: 744 RTASEVFGVPMENVTSEMRRRAKAVNFGIVYG-----ISDFGLSRDLGVLRAEARQYIDG 798 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 F+ + + + + + L+G R + + K Sbjct: 799 YFDRYSGVKGYIDEIIAEARRQGYVTTLLGR---------RRRLPDLFVKNKIRQNFGER 849 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + Sbjct: 850 AAMNTPIQGTA----------------------------------------ADIIKAAMV 869 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCS 649 R G ++ L M L VHDE++ E P + + Sbjct: 870 RIPGL---------LAAKGLKTRML----------LQVHDELIFEAPKEELSEAAALIRE 910 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL + + Sbjct: 911 TMEQTIR--LDVPLTVDVKTGPNW 932 >gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087] Length = 880 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 96/671 (14%), Positives = 182/671 (27%), Gaps = 157/671 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQKF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAEGYEAKRY 673 L A+ + + Sbjct: 866 LVADENTGQTW 876 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 101/662 (15%), Positives = 189/662 (28%), Gaps = 165/662 (24%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--DI 88 A A V+ + L ++L + + + ++ I DI Sbjct: 496 VAFAVAVAGCEVQYSGPVQG------LARHLASAKRI-----ATPDVKALLRSHAIWRDI 544 Query: 89 PSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 P RW + A P + G L+A + Sbjct: 545 PGDRWFDLGLAAYLLD-PEERDYGWPRLAARWGDMLDRSTDNPG--LLALEMAQGMAGRL 601 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + ++ E L + + + G +D Sbjct: 602 AGASLDTLMRTL---------------------------ELPLVPVLADMEEAGIAVDRT 634 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGT 260 + + E ++ +++ K G + R L LF G+ V + T Sbjct: 635 AFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGGQATT 693 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + L + DLIL+ L L + V + GR+ T A+ TGR Sbjct: 694 SQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAGRIHSTFNQL-ATATGRL 752 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P G +RSC A+ G LV AD Sbjct: 753 SSSNPNLQNIP------------------------ARGDLGRRMRSCFTAAEGNLLVSAD 788 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA ++ + + AF G DI+ T ++T + V+ +QR K + Sbjct: 789 YSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF--- 845 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ + + ++ Sbjct: 846 -----------GLIYGMGP------------------------------QKLGQELRITV 864 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + ++ Q + + ++ Sbjct: 865 NEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTL----------------------- 901 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619 + RR + ++ + + SQ R+ ++Q + DI+ M A Sbjct: 902 ---AGRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDD 949 Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS--WAKGLPLKAEGYEAK 671 ++L VHDE++ E P+ + L LM++ +PL + K Sbjct: 950 PVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGK 1009 Query: 672 RY 673 + Sbjct: 1010 DW 1011 >gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] Length = 880 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAATFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 193/660 (29%), Gaps = 165/660 (25%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF----ERILFKK-TLGID 87 A A D+ + T + LL+ + F + Sbjct: 357 LAIAVGDKEIVYTGLTP--KLVDRLLK-------------AKFVIAPDVKALLHTHADWG 401 Query: 88 -IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 IP ++W + + + + + L + P Sbjct: 402 RIPPEKWFDLGLASYLLEPED------RDYGWPKLSARWGTALGL--------SAANPGL 447 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 Q + ++ T EL L + + G ++D + + Sbjct: 448 LALTMTDQLLKRLSGAHLVELMKTLEL------------PLIPVLADMESAGVKLDAEAL 495 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLK 262 E + ++ ++ ED+ + G + R L LF + + + T + Sbjct: 496 ADFLEEVQKDLDRITEDVYREAQGPF-NIRSAQQLGDVLFNRLKLPVSGKTRGGQASTSQ 554 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D +L L L + DGR+R T A+ TGR S Sbjct: 555 DVLEKLSGHHPVVDALLEFRKLEKLRSTYLEPLPRLMGGDGRIRTTFNQL-ATATGRLSS 613 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P G +R+C A GKKL+ AD + Sbjct: 614 SNPNLQNIP------------------------VRGALGRRMRACFTAPEGKKLISADYS 649 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++ ++ + AF G DI+ T + F+ P +++ +QR K + Sbjct: 650 QIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTINFG---- 705 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ + A + K+ + Sbjct: 706 ----------LIYGMGP------------------------------QKLAQELKIPLSE 725 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + QG+ ++++ E Sbjct: 726 AKAFMARYFERLQGLKHFYENVEEMAREQGYVTTL------------------------- 760 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--- 619 + RR D++ + + + ++Q + DI+ M Sbjct: 761 -AGRRRPLPDIQAESQQARSLARRQ---------AINTLIQGSAADIIKLAMLAVHGDET 810 Query: 620 ---NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS--WAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + +LM +PLKA+ A+ + Sbjct: 811 LRTLDAKLLLQVHDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKADWGAAENW 870 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 73/508 (14%), Positives = 138/508 (27%), Gaps = 117/508 (23%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + E + + RG +D + + + + ++L E I K + Sbjct: 16 MLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAGEEF-NI 74 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF ++ ++ T +L IL + Sbjct: 75 NSPKQLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTYA 134 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L+ + D R+ G + TGR S QN+P Sbjct: 135 DGLANYIGDDERIHGKFNQT-ITATGRISSTEPNLQNIP--------------------- 172 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G V AD + IE RVLA ++ + I A+ +DI+ T Sbjct: 173 ---ARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHART 229 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 ++ F PID+VS QR K + + Y L + + F Sbjct: 230 ASEVFGVPIDQVSSIQRRDAKAVNFGIVYG-----LSAFGLSQDLKITRKQAQEYIDKYF 284 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 E + + + + ++ E + + + Sbjct: 285 ETYPKVKKYLNREVEKGKEEGFVTTMFQRIRPI---------PELKSSNFMQRN------ 329 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 G+ +N+ Sbjct: 330 -----------------------------------------FGERVAMNSPIQG------ 342 Query: 593 YGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGT 646 + DI+ M K ++L +HDE++ E D+ V Sbjct: 343 ------------SAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKG 390 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + M +PL + + + Sbjct: 391 ILTREMMSAAK--LSVPLSIDIHTGNSW 416 >gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159] gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159] Length = 878 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 91/654 (13%), Positives = 175/654 (26%), Gaps = 143/654 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 AW D+ + L + ++ + LGID+P Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLP 389 Query: 90 SKRWICTSVLARTNG--LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + + +++ + GK + P Sbjct: 390 TASF-DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKR--------AIPEK 440 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +H+ + + +L L + E L + + G + + + Sbjct: 441 NVLLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETL 500 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTL 261 ++ E + L ++I L G + L + LF G+ T Sbjct: 501 QDMERANEIELQALTQEIYDLA-GEAFNINSPKQLGVILFEKLGLPLSATKKTKTGYSTA 559 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L IL + + L +++S DG++ ++TGR S Sbjct: 560 VDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRYLQ-DLTQTGRLS 618 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 619 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSD 654 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Sbjct: 655 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 714 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + Sbjct: 715 VY-----GISDFGLANNL---------------------------------------GIS 730 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A + + + ++ G+ + Sbjct: 731 RKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFH-------------------- 770 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ + + R + +Q + DIL M + + Sbjct: 771 ------RRRELPDINSRNFNIRSFA---ERTAI------NSPIQGSAADILKVAMIHLDQ 815 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 ++L VHDEIV E P+ ++ L M +PL A+ Sbjct: 816 ALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVKETMESAIE--LSVPLVAD 867 >gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] Length = 880 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 98/657 (14%), Positives = 181/657 (27%), Gaps = 143/657 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQKFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 I++P+ + + + L L +E KG+ + Sbjct: 388 IELPAASF-DARLAKYLLSTVEDNELATIARLYG-QTILLTDDEVYG------KGAKRAL 439 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P H+ + ++ +L L + E+ L + + G +++ Sbjct: 440 PEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVER 499 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSE 258 + + +Q + + L ++I L + L LF G+ Sbjct: 500 ETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGY 558 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL S + L EA++SDG++ ++TG Sbjct: 559 STAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIASDGKIHTRYVQ-DLTQTG 617 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +R + L+ Sbjct: 618 RLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWADSVLL 653 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + Sbjct: 654 SSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVN 713 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ + N Sbjct: 714 F--------------GVVYGISDFGLANN------------------------------L 729 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + A + + + + G+ + + Sbjct: 730 GISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH----------------- 772 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ + R + +Q + DIL M N Sbjct: 773 ---------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADILKVAMIN 814 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + ++L VHDEIV E P+ +V L M A +PL A+ Sbjct: 815 LDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] Length = 885 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 91/631 (14%), Positives = 186/631 (29%), Gaps = 126/631 (19%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L ++L ++ + + K+ LGI+ S + +++ + + Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR-LGIEAESIDF-DLLLVSYLLNNTDNSNDLGQ 422 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K+ + KG+ D T H+++ + K+ + + Sbjct: 423 L----CQKQGYFGVKSDDEVYGKGAKKEICADETFFEHLRSKVFAIAFLKQKLMQKLKDN 478 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + + ER L ++ + G + D + + + ++ L+ I + G + Sbjct: 479 SQDHLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLIYQEA-GETFN 537 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF G+ ++ T +L + +++L R + + Sbjct: 538 INSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRGNDIVDNVLLYRQFAKLKST-Y 596 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + + D ++ + TGR S QN+P Sbjct: 597 IDGLIKVMDQDEKVHTRYTQTL-TTTGRLSSVEPNLQNIP-------------------- 635 Query: 352 TIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I G ++ +D + IE RVLA I+ ++ KAF + DI+ Sbjct: 636 ----VRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQKAFKDDFDIHA 691 Query: 411 TTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T K F D+V+ R K + G+ +Q++ Sbjct: 692 NTAMKIFGLSSPDEVTPNMRRQAKAVNF--------------GIVYGISDFGLAQSI--- 734 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + GV + ++ E Sbjct: 735 ---------------------------GCRRDQAKTFMETYFESFPGVKRYMTEIVELAR 767 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 RR R + + +NT Sbjct: 768 NQGYVETLFKRRRYLEGIRSKNFNQ-----------------RSFAERTAMNT------- 803 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE++ E P+ Sbjct: 804 -----------PIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPV 852 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L S+M +PLK E K + Sbjct: 853 LEKLVPSVMDSAVK--LDVPLKVESGHGKTW 881 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 93/670 (13%), Positives = 177/670 (26%), Gaps = 135/670 (20%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 A + A + L +L D + V H+S R+L Sbjct: 298 AMMGALVGVGLAPAPGEAFYVPLVASDGGLGEGALALLRGWLEDSARLKVVHDSKRLRVL 357 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLA-LNFSEHLTKMEEGKALIAR 134 + G+ + + + P + A L + K G AR Sbjct: 358 LARY-GVSLSGV-VADPRLESFLVDPTGLVPHRIDQLVKAFLQRTVPPAKSVLGSGKKAR 415 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 S ++ + +R E +L L + + L + T+ Sbjct: 416 RFAELAASVTGAWACQRADVVVTMWPQIRERLEEV-----DQLPHLQEVDLPLSEVLATM 470 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R++ + ++ +L+ +I + + L + LF + Sbjct: 471 ELAGVRVEPTELEEMSAEFRATLLQLEAEIWRQAGREF-NVASPKQLGVVLFEELNLPVI 529 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 T +L L+L + L A++ GR+ T Q Sbjct: 530 KRTKTGYSTAAEVLERLTREHPIAGLLLQHRKLAKLLTTYTEVLRAAINPVTGRVHPTFQ 589 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR Q P +R I Sbjct: 590 QTYA-ATGRLISTNPDIQKTP------------------------VRTPEGKRIRRAFIP 624 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + G +++ AD + IE R+LA + + ++AFA ED++ T A+ F + V+ QR+ Sbjct: 625 APGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDAQRS 684 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 + K + A Sbjct: 685 VAKTVNFATI--------------------------------------------YGQGAT 700 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + L T + + + GV + EG + Sbjct: 701 ALGQRLGLKRTEAKGYISRYFQAYAGVREWLDRTIEGALASGYVETLL------------ 748 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR V ++ + + + ++ +Q + D+ Sbjct: 749 --------------GRRRVIPELSSNSAMVRQVGMRM---------AANTPIQGSAADLC 785 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPL 663 M K ++L +HDE+V E + + M +PL Sbjct: 786 KLVMLTLAKRFQTRGLQTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVGD--LRVPL 843 Query: 664 KAEGYEAKRY 673 + + Sbjct: 844 RVHIGVGANW 853 >gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678] Length = 880 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQTENEKTLESLTQEIYDLAGQEF-NINSPKQLGTVLFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 98/667 (14%), Positives = 169/667 (25%), Gaps = 135/667 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQ----------SAMPSDLLQYLRDETVMCVAHNSLFER-- 77 + A A Q L L + AH +R Sbjct: 341 VVGLALA-GGGRAFYLPLRHQYLGAPAQLSAEEAAGALRPLL-SGELPKHAH----DRKG 394 Query: 78 --ILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALI 132 + LG+ + T + +R +L + L + G Sbjct: 395 VQHALAQ-LGLAL-GGPGADTDLASRLLLPTRREHALADVARE-RIGCELPRDPSGGDAA 451 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + + ++ + Q + +E E L D ER L + Sbjct: 452 RKSERVPVEGLEVERVGEWAAQCAASLLDLAPA-LERALESEGLLPLYRDVERPLVPVLC 510 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G +D + + + + L+ I + T L LF + Sbjct: 511 EMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHPF-NIASTRELAQVLFTELALP 569 Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T + +L L+L A + ++ L + V DGR+ T Sbjct: 570 VLKRLKTGPSTDQDVLEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTT 629 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 GA TGR S QN+P S +R+ Sbjct: 630 FHQAGA-ATGRLSSSDPNLQNIP------------------------VRTELSRRIRAAF 664 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G +L+ AD + IE R+LA + + ++AF ED++ T A+ F +V+ + Sbjct: 665 VAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDM 724 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R I KV+ + Y LDL F + + + Sbjct: 725 RRIAKVLNFGIAYG-----LSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVED 779 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVP 547 L G A + L + +A + V Sbjct: 780 ARATGESRTLFGRA---------RAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVA 830 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + + R R Sbjct: 831 MIRVHD----------------------------ALAGDARRARL--------------- 847 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666 + +VL E P+ V L M +PL E Sbjct: 848 ------LLQVHDE---LVL--------EVPEDELAPVEALVRREMGGAAQ--LKVPLDVE 888 Query: 667 GYEAKRY 673 + Sbjct: 889 VGVGHSW 895 >gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Y714s Mutant Bound To G:t Mismatch Length = 580 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V D + T+ ++TGR S QN+P Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVSGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 99/638 (15%), Positives = 187/638 (29%), Gaps = 155/638 (24%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLP---SSLKN- 111 L ++ E H++ +F G DI + T++ A L + Sbjct: 366 LKVWVESED-PKYLHDAK---TVFHMLKGRDITLRGIAHDTAIAAYLLRPGQRTYELHDV 421 Query: 112 ----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LN + +L+ + + ++ + Y Sbjct: 422 YQRHLQRQLNLGGDQLSLLGDTSLVD----SAAAVLELAEELSAQLRGIDSYDLYA---- 473 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 D E L + + + G +D+D++ + + +++E+ +L Sbjct: 474 --------------DLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQL 519 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SILSHSNITQLAKDLILNR 281 D + L + LF + ++ T L+ +N L+ +R Sbjct: 520 VDEPSLNLSSPKQLSVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHR 579 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L +AV+ +GR+ T + AS TGR S QN+P Sbjct: 580 EYQKMKST--IEGLIKAVADNGRIHTTFKQTVAS-TGRLSSTDPNLQNIP---------- 626 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIK 400 A +RS G L+ AD + IE RV+A ++ + I+ Sbjct: 627 --------------VRTEAGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIE 672 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ GED++ ++ F+ PID+V+ E R K M L GL Sbjct: 673 AYREGEDLHNFVGSRVFDVPIDQVTPELRRRVKAMSYGLV--------------YGLSAY 718 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S + + + + +++ + GV Sbjct: 719 GLSNQLS------------------------------ISAGEAKSIMESYFERFGGVKSY 748 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ E RR ++ D Sbjct: 749 LDNVVEQARRDGYTSTVF--------------------------GRRRYLPELTSDN--- 779 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSET 636 A R +Q + DI+ M + ++L VHDE+V E Sbjct: 780 RVARENAERAA------LNAPIQGSAADIIKVAMIRVDRALESFNSRVLLQVHDELVVEI 833 Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M + +PL+ + Sbjct: 834 APGELAEVREIVEREMDSAITLL--VPLEVSAGTGVNW 869 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 106/681 (15%), Positives = 192/681 (28%), Gaps = 153/681 (22%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D T L +L D H + Sbjct: 365 AYDADATALAIVAADGDGRYIDTTSLDPDDEAALASWLADPGPPKALHEAK-----LAMH 419 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL + L E Sbjct: 420 ---DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRADNPA---QQQL 473 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L L E + + + Sbjct: 474 SLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVLAEM 531 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +D+D + +LQ A + + G + L+ LF + Sbjct: 532 EHTGIAVDIDQLRQLQSEFADLIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELAMPKT 590 Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T L +L ++ + ++ L +V+SDGR+ T Sbjct: 591 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 649 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P A +R + Sbjct: 650 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 684 Query: 370 A---SNGK-------KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 G +L+ AD + IE R++A ++ + I+AF GED++ ++AF+ Sbjct: 685 VESRPPGSGGGAVFTELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDV 744 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 PID+V+ + R K M L GL + +K Sbjct: 745 PIDEVTPDLRRRVKAMSYGL--------------AYGLSAYGLAAQLK------------ 778 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + ++ + A+ G+ +D+ + Sbjct: 779 ------------------ISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVF- 819 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR ++ + A + Sbjct: 820 -------------------------GRRRYLPELDSSNRNVREAAERA---------ALN 845 Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 +Q + DI+ M + + ++L VHDE++ E D ++ L M Sbjct: 846 APIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMG 905 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 +A +PL+ + + Sbjct: 906 SA--YALDVPLEVSVGYGRSW 924 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 107/672 (15%), Positives = 189/672 (28%), Gaps = 144/672 (21%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D + L +L D H + Sbjct: 364 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 418 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL + L E + Sbjct: 419 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENP---QQQQL 472 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L+ E + + + Sbjct: 473 SLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 530 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 + G +DLDL+ +LQ A + + + G + L+ LF + Sbjct: 531 ENAGIAVDLDLLSELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELQMPKT 589 Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T L +L ++ + ++ L +V+SDGR+ T Sbjct: 590 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 648 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P A +R + Sbjct: 649 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 683 Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +G +L+ AD + IE R++A ++ + I+AF GED++ ++AF PI++V+ E Sbjct: 684 VGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGEL 743 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K M GL Sbjct: 744 RRRVKAMSYG--------------LAYGLS------------------------------ 759 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + K+ + A+ A+ GV + E + Sbjct: 760 AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVL---------- 809 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR ++ + A + +Q + D Sbjct: 810 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 844 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 I+ M K I+L VHDE++ E + L M + Sbjct: 845 IIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 902 Query: 662 PLKAEGYEAKRY 673 PL+ + + Sbjct: 903 PLEVSVGYGRSW 914 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 94/660 (14%), Positives = 182/660 (27%), Gaps = 150/660 (22%) Query: 33 CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 A+AW + D + P + ++ + L Sbjct: 345 VAFAWGNSEKIYVSKNLDLLTEMKFPEN-----------------TYDFKKNRVLLSHLN 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 I++P ++ + K + T E F KG+ + Sbjct: 388 IELPLVKF-DAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI-------FGKGTKLAL 439 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P D +H+ K + A ++ LSD E L + + G + Sbjct: 440 PDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQ 499 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + ++ ++ L +I L + L + LF + + ++ T Sbjct: 500 NTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYST 558 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL + + L ++ DG++ ++TGR Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRL 617 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R + S L+ +D Sbjct: 618 SSVDPNLQNIP------------------------VRLEEGRKIRKAFVPSQDSLLLSSD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 654 YSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGI--------------------- 692 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + T+ +A + + A + Sbjct: 693 ----------------------EKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITR 730 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + ++ G+ +++ + Sbjct: 731 KDAKNYIETYFERYPGIKTYMENIVREARDKG--------------------------FV 764 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 S RR D+ + R + +Q + DIL M N K Sbjct: 765 ETMSHRRRKIPDINARNFNVRGFA---ERTAI------NSPIQGSAADILKIAMINLDKA 815 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDEI+ + P + L M + A +PLK + K + Sbjct: 816 LTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVDDNTGKTW 873 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 111/689 (16%), Positives = 200/689 (29%), Gaps = 153/689 (22%) Query: 12 SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMC 68 S + VG A A T A D + D T + + L +L D Sbjct: 341 SRFGVAVVGTHK-AYDADATALAIVAADGDGRYIDTSTLTPEDE--AALASWLADPGPPK 397 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFS 119 H + D+ + W T++ A +L + + Sbjct: 398 ALHEAK-----LAMH---DLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHR 449 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 E + E D + ++A + D E R L Sbjct: 450 ELRAETPE---QQQLSLLDDSDGVDEQAVQTVILRACAVLDLADALDQELARI--DSLSL 504 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 LS E + + G +DL ++ +LQ A + + + G + Sbjct: 505 LSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDA-AEAAYSVIGKQINLGSPK 563 Query: 240 ALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L+ LF + L+S+ + L +L ++ + + Sbjct: 564 QLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQH--LLAHRDATRLKVT-V 620 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L +V+SDGR+ T A TGR S QN+P Sbjct: 621 DGLLNSVASDGRIHTTFNQTIA-ATGRLSSTEPNLQNIP--------------------- 658 Query: 353 IADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 A +R + G +L+ AD + IE R++A ++ + I+AF GED++ Sbjct: 659 ---IRTEAGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSF 715 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 ++AF+ PID+V+ E R K M GL Sbjct: 716 VASRAFSVPIDEVTPELRRRVKAMSYG--------------LAYGLS------------- 748 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 A + K+ ++ + + + GV +D+ + Sbjct: 749 -----------------AYGLAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKD 791 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 + RR ++ + A + Sbjct: 792 GYTSTVL--------------------------GRRRYLPELDSSNRQVREAAERA---- 821 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645 +Q + DI+ M N + I+L VHDE++ E + + Sbjct: 822 -----ALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELE 876 Query: 646 TLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M +PL+ + + Sbjct: 877 QLVREHMGNAYP--LDVPLEVSVGYGRSW 903 >gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353] Length = 880 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 95/664 (14%), Positives = 178/664 (26%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQDFLSKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF + Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMRLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330] Length = 880 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 157/664 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLIKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 707 RNAKAVNF--------------GVVYGISDFGLANN------------------------ 728 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + G+ + + Sbjct: 729 ------LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYH---------- 772 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 773 ----------------RRRSLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N + ++L VHDEIV E P+ +V L M A +P Sbjct: 808 LKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAAIELA--VP 865 Query: 663 LKAE 666 L A+ Sbjct: 866 LVAD 869 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 78/587 (13%), Positives = 155/587 (26%), Gaps = 130/587 (22%) Query: 94 ICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 V A + ++ K++EG + C + + Sbjct: 404 FDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEG----TKSCYEAYTAYACVPVLE 459 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 ++ +F + + E L + G +++ + + + Sbjct: 460 KKLEENGMFCLFN------------------EIEMPLVFTLYDMEQAGVKVEGEELKRYG 501 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 E + +L+++I ++ + L + LF + ++ T +L Sbjct: 502 EELGARIVELEKEIYEMAGEEF-NINSPKQLGVILFEKLEMPHAKKTKTGYSTAADVLDK 560 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 IL + + L+ + DGR+ + TGR S Sbjct: 561 LAPEYPIVAKILEYRQLAKLKSTYADGLANYIGMDGRIHSKFNQT-ITATGRISSTEPNL 619 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R + G V AD + IE R Sbjct: 620 QNIP------------------------VRMELGRLIRKVFVPKEGCVFVDADYSQIELR 655 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA +G++ I+A+ DI+ T ++ F+ P D+V+ QR K + + Y Sbjct: 656 ILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYG----- 710 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + L + + FE + ++ E + L G + Sbjct: 711 ISSFGLSQDLSISRKEAAQYIEHYFESYPGIKTFLDKCVSDAKEKGYAETLYGRRRPM-- 768 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + V + Sbjct: 769 -------PELKSSNFMQRSFGERVAMNAPIQGTAADII---------------------K 800 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + V + N L M L Sbjct: 801 IAMIHVNEELKKRN----------------------------LKSRMI----------LQ 822 Query: 628 VHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E +T V + M +PL + + K + Sbjct: 823 VHDELLIEADETELEEVQQILQDKMEHAAELL--VPLSVDMHTGKNW 867 >gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake] gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake] Length = 861 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 181/662 (27%), Gaps = 151/662 (22%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF 80 + I + ++ E D+ + ++ V ++ Sbjct: 331 LHIEIVDNSIGSISLSYRKEVFFYIDKDHVDDALEFIKPIFSLGYILKVI----YDVKTL 386 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 K + ++ + V++ + S I+ + SI Sbjct: 387 LKIIP-NLDIVAFNDIMVMSYVLNPG--------VHDHSLQNI--------ISYNVEQSI 429 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + AN + +L + D L+ E+ L + + G Sbjct: 430 TNM----NAANLLLLHELLRKSLFVD-----RLYTV---YERVEKPLIRVLDNMEKIGVL 477 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---- 256 +++D++ L +++ L+ +I KL+ + + L LF GI Sbjct: 478 VNVDVLKTLSATFSEKINMLESEIYKLSGAEF-NIASSKQLGNILFDKMGIKKGKKLSSG 536 Query: 257 SEGTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGA 314 + T +LS D IL + + L + +S+ GR+ + Sbjct: 537 NYSTDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYTDVLEKQKNSNSGRVHTFYSM-VS 595 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R IA G Sbjct: 596 TATGRLSSSNPNLQNIP------------------------VRSEEGNSIRRAFIAKKGY 631 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 KL+ AD + IE R++A IA AF +DI+ T + FNT Sbjct: 632 KLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIFNTE-------------- 677 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 K ++ + + A Sbjct: 678 --------------------------------KLDKNLRRRAKSINFGIIYGMSAFGLAK 705 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + + + + +++ Sbjct: 706 QLSISRSEASTYINNYFRSYPEIQSYMENIKAYAKTHGYTRTIF---------------- 749 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 R+ D+ D TA + R Q S DI+ M Sbjct: 750 ----------GRKCFVKDINSDNV---TARNFSERAAINAPL------QGTSADIIKMSM 790 Query: 615 KNATKN--GYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 + ++L VHDE++ E + +V + +M +PLK + Sbjct: 791 IHLFDKLKNGSLILQVHDELLFEILEEQVDDAVKIIREVMENIVK--LSVPLKVDFNIGD 848 Query: 672 RY 673 + Sbjct: 849 NW 850 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 108/659 (16%), Positives = 198/659 (30%), Gaps = 135/659 (20%) Query: 33 CAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A + D T L ++L DE + V H+ ++ G + Sbjct: 355 VALAAPNGEGAYLDVTTLTEDDERALGEWLADENIHKVGHSLKKALHGL-RSRGWRLAGL 413 Query: 92 RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + T + A L + L E ++ EG ++ S + Sbjct: 414 -VMDTELAAYLVRPGQRSFKLDDLVLRYLGKELRSEGVEGDGQLSLLDTDSDNEIVRREL 472 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 V+A + E L+ D E L + + G +D+D++ + Sbjct: 473 ----VRARAVLELSSALSAELAAIGATTLLA--DIELPLLSMITDLEAAGIAVDIDVLTE 526 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSIL 265 L+ A K+ E G + L++ LF G+ ++ T L Sbjct: 527 LEAHYANRVKQATEQAY-SVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAL 585 Query: 266 SHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + L+ +R A+ + + L +AV+ DGR+ TL + TGR S Sbjct: 586 QTLYEKTEHPFLQYLLEHRDATKLRST--VEGLIKAVADDGRIHTTLHQT-ITATGRLSS 642 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P +R + G +L+ AD Sbjct: 643 VDPNLQNIP------------------------VRTDEGRRIREAFVVGEGYAELMTADY 678 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++ ++ I+AF +G D + T A+ F+ +V+ EQRA K M L Sbjct: 679 SQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMNYGL-- 736 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GL + + ++ Sbjct: 737 ------------AYGLS------------------------------AYGLSQQLRISTE 754 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + GV + +EG + + Sbjct: 755 EARALMDEYFLRFGGVRDYLHSV---VERAAKEGYTETI--------------------- 790 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 RR D+ ++ +Q + DI+ M + Sbjct: 791 --FGRRRYLPDLTSTNRQRREMAERM---------ALNAPIQGSAADIIKVAMLGVHRAL 839 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E D + V L M +PL+ + + Sbjct: 840 AEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGSAYE--LSVPLEVSVGYGRSW 896 >gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 887 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 78/648 (12%), Positives = 175/648 (27%), Gaps = 135/648 (20%) Query: 45 WDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 W ++ + S ++ + L + + N+ + + GI++ + +++ Sbjct: 352 WWVSQDPELLSAPEIKELLENPKIKKDTFNAKAHYVALHRQ-GIELHGNGF-DFLLVSYL 409 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + L + S + + +F + Sbjct: 410 LNTNDNSNDLG-QLAHEH------------NYYQVQSDEEVYGKGKSRHLPDDRSVFFTH 456 Query: 163 CKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + A +L L D ER L + + G +D + ++ Sbjct: 457 LVQKGMAIEQLKHPLTDQLHENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSK 516 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 + + +L++ I + T L LF + ++ ++ T +L Sbjct: 517 LKERLAELEQAIYNEAGEEF-NINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEKLQ 575 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D IL S + L + + S D ++ ++TGR S Q Sbjct: 576 GRAPIIDNILVYRQISKIQSTYITGLLKVIHSSDQKIHTRYLQT-LTQTGRLSSVDPNLQ 634 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P +R S G K+ +D + +E R Sbjct: 635 NIP------------------------VRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELR 670 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAK 446 VLA + G+ + F +G+DI+ +T + F+ P +KV+ R K + + Y Sbjct: 671 VLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYG---- 726 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + + S F+++ + + + + + L Sbjct: 727 -ISDYGLSQNIHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGYVETLTHR----- 780 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 R + + Sbjct: 781 ----RRYLPEINSKNFSRRSFAERTAMNTPIQGSAADI---------------------- 814 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +K +N + + + + Sbjct: 815 ------IKIAMINMNEQLQKAGLKA--------------------KMLLQIHD------- 841 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P+ + L +M +PLK E + Sbjct: 842 ----ELIFEAPEEEIDQLRELVPKVMDSAVK--LDVPLKVESKVGDTW 883 >gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1] gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1] Length = 655 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 169/705 (23%), Positives = 278/705 (39%), Gaps = 85/705 (12%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60 LF+D ET S L + G+ Y + + + + D E +P ++ + Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEVGQPVPKQIIGH 63 Query: 61 LRDETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNA 112 L VAHN+ F+ + ++ G ++ + C++ AR NGLP SL A Sbjct: 64 LN--GSPFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C AL K EG A++ K +P D T A+H + + +Y D +A Sbjct: 122 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFTRTYKYALIDTDAMVG 173 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG I Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 234 LAVTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQAL 347 L V GRL+ ++GA GR + PR + + A Sbjct: 293 AILRAHVG--GRLQHHTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 349 Query: 348 NRGETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 RG+ + R A G LV ADL+GIEAR+ W+A + K+ Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G D Y ++ D V+K+QR +GKV +LALG+ GG F +MA++ G+ L Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + WRA + Sbjct: 470 PPEQVS---------------------------------------EIVYNWRAGRPAFER 490 Query: 520 LWKDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574 W + + G + ++ R R + + LPS R + Y + + Sbjct: 491 WWSLCEYSVLMALDQPGREVVMPVGRDFCSQITFVRDARALRMHLPSGRAISYHNARLHL 550 Query: 575 --GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 G + T K+ N Q ++RD+ + + + +IV V+DE Sbjct: 551 EPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDE 609 Query: 632 IVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E + L M + +W GLPL AEG+ R+RK Sbjct: 610 ALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 83/580 (14%), Positives = 154/580 (26%), Gaps = 147/580 (25%) Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 GK + T +Y D + T L L Sbjct: 1 ETMKYVDLVGKGAKQ---IPFSHVGVQEAT------------QYAAEDADITLRLHCVLA 45 Query: 179 PLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P + E L + + I G +ID + + K +++ + + Sbjct: 46 PKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMV-IAQQKAMD 104 Query: 228 TDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 G + L++ LF + T + L +IL + Sbjct: 105 LAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALEAIVDQHALPRVILEYRS 164 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L E + GR+ GA TGR S QN+P Sbjct: 165 LAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGA-ATGRLSSSDPNLQNIP----------- 212 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A +G+KL+ D + IE R++A ++G+ + AF Sbjct: 213 -------------IRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAF 259 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +G D++ A+ F ID+V+ +R K + G+ Sbjct: 260 ESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINF--------------GLIYGMS---- 301 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + + + + GV + Sbjct: 302 --------------------------AFGLARQLGISRGEAQDYIALYFDRFSGVRDFME 335 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + RRL + + T Sbjct: 336 NTRQQARDRGYVETVF--------------------------GRRLYLNSIASGNQ---T 366 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDIVLTVHDEIVS 634 + R +Q + DI+ M + ++L VHDE+V Sbjct: 367 QRAGAERAAINAP------MQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVF 420 Query: 635 ETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + + V + + M +PL + + Sbjct: 421 EADEGFVPTLVHEVSARMAAAAQ--LRVPLVVDVGVGHHW 458 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 85/563 (15%), Positives = 165/563 (29%), Gaps = 121/563 (21%) Query: 125 MEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L ++ + + ++ A +++ E + L Sbjct: 396 DLAGYLLNSQAGEYTAENLCLTYKVTYRSDMGDFADVCSLLPLAENLKLQLEQTEMLKLF 455 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ E L + ++ G R D + + + + + ++ + L + I L G + Sbjct: 456 NEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEALTKQIYDLAGGEF-NIASPKQ 514 Query: 241 LRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L L+ G+ ++ T +L L+L + + ++ L + Sbjct: 515 LGEVLYEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVRLVLEYRTLTKLSSTYVDGLLK 574 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V SDGR+ + +RTGR S QN+P Sbjct: 575 EVESDGRVHSVFKQTE-TRTGRISSTEPNMQNIP------------------------VR 609 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A G L+ AD + IE RVLA + G++ K F G DI+ T ++ F Sbjct: 610 KEIGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTASQVF 669 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 P D V E R+ K + + G+ Sbjct: 670 GIPADMVLPEMRSAAKAVNFGII--------------YGIG------------------- 696 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + + + K + V Q + ++ G Sbjct: 697 -----------AFSLSKDIGVSVAEAKQYIKNYLDNFPKVSQFM---DKTVEDGIKNGYV 742 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + RR ++ + + Sbjct: 743 TTI-----------------------FGRRRYIPELSATNKVMQAFGKRA---------A 770 Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSL 650 +Q + DI+ M K ++L VHDE++ E P+ + L Sbjct: 771 MNAPIQGAAADIIKIAMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEE 830 Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673 M A +P++ E + + Sbjct: 831 MENAVKLA--VPMEVSVGEGESW 851 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 90/621 (14%), Positives = 179/621 (28%), Gaps = 131/621 (21%) Query: 59 QYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L+D+ + V ++ + + G K + + S + + Sbjct: 350 KLLKDQGIQKVVYDLK---NILHRVDFGDTYQLKNCNDVMLASYVLDSTRS------SYD 400 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 I+ A + D+ + + +++ + Sbjct: 401 LETLF---------ISYLNTDIAIIKENRWAGATILLRNLWDELSKLIDLNSCQYVYENI 451 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 E L + + G++++ + + + + I + KL+ I ++ G + Sbjct: 452 ------EIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIA-GEWFNINS 504 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L LF + +V ++ T +L LIL+ + Sbjct: 505 PKQLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELYDKHEIVPLILDYRMYTKILTTYCQG 564 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L +A++S GR+ G + TGR + QN+P Sbjct: 565 LMQAINSVTGRVHSNFIQTG-TATGRLASAESNLQNIP---------------------- 601 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T Sbjct: 602 --VKYDEGRLIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTA 659 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ F + +V+ R+ K + + Y + + + FE Sbjct: 660 AEIFGVDVSQVTPTMRSQAKAVNFGIIYG-----ISDYGLSKDIKISRKEAAEFINRYFE 714 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + + + + E L + + + K+L + Sbjct: 715 KYPKVKEYLDNVVKFARENGFVLTLFNRKRYI---------KDIKSTNKNLRNYAERIAM 765 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + ++ RRL ++K Sbjct: 766 NSPIQGSAADIMKIAMIRVY------------RRLKEENLK------------------- 794 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 SR IL VHDE++ E+P V + M Sbjct: 795 ------------SRIIL----------------QVHDELLIESPYEEKEIVKEIVKTEME 826 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 S +PL E E + Sbjct: 827 NAVS--LKVPLVVEVKEGLNW 845 >gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] Length = 931 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 88/631 (13%), Positives = 175/631 (27%), Gaps = 128/631 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + + L D T++ N+ E + K LGI + + +++ + + AL Sbjct: 411 VKRILEDSTILKNVFNAK-ELYVSLKRLGIALKGVSF-DLLLVSYLLDTNDNNNDLG-AL 467 Query: 117 NFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + GK D + +A + + D + Sbjct: 468 AHDNDYYAVMTDEEVYGKGAKFAIPAADADFFEHLGRKAMAINLLRE----PLLDRLLSH 523 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E +L D E L + + G +D + +L+++ + + +L++ I + Sbjct: 524 E-QTKLYE--DIELPLTKILADMESTGITVDSEQLLQMRSKLTERLSELEQKIYQQAGHE 580 Query: 232 IRSSRQTYALRMYLFLITG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L + LF I T +L + IL + Sbjct: 581 F-NIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEKM-GDVPIVESILAYRQVAKIQ 638 Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + SD ++ ++TGR S QN+P Sbjct: 639 STYVEGLLRVIHGSDSKVHTRYLQT-LTQTGRLSSVDPNLQNIP---------------- 681 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + + +++ AD + IE RVLA I G+ AF NGE Sbjct: 682 --------VRIEEGRQIRKAFVPSHSDWQILSADYSQIELRVLAHITGDKNLQAAFINGE 733 Query: 407 DIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ T + F + V R K + + Y + + + Sbjct: 734 DIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYG-----ISDFGLSKNIGVSRKEAK 788 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + F+ + + + E + + R + + Sbjct: 789 AIIETYFDQYPDVKKWSDDIIASARETGYVETIAHR---------RRYLPDIKAKRFNAR 839 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + +N+ Sbjct: 840 SFAER-----------------------------------------------TAMNSPIQ 852 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFS 643 K+ VQA + G ++L VHDE++ E P + Sbjct: 853 G---SAADIIKIAMIKVQA-----------AIEQAGMQAHMLLQVHDELIFEAPASEMAD 898 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L +M +PL + + Sbjct: 899 LEKLVTKVMDSAVK--LDVPLLVSSHVGASW 927 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 93/630 (14%), Positives = 178/630 (28%), Gaps = 135/630 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L+Q+L H + + GI++ T++ A Sbjct: 372 KVLVQWLESPA-PKYFHAAKAAFHMLAG-RGIELDGLA-HDTALAAYILRPGQRTYELSD 428 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K+L A + S+ +A + +D+++ EL+ Sbjct: 429 VYQR-------HLQKSLGAATEQMSLLDSSSLVDQAAAIMELAEKLTAELQDIDS-FELY 480 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L E L + + G +D+D++ ++ ++ + + +L + Sbjct: 481 TDL------ELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDEKLN 534 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAI 289 L+ LF + ++ T + D +L Sbjct: 535 LNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHREYQKMKT 594 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L L + V DGR+ T + TGR S QN+P Sbjct: 595 T-LEGLIKTVQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP------------------ 634 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +RS I G +L+ AD + IE RV+A ++ + I+A+ GED+ Sbjct: 635 ------VRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDL 688 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + ++ F+ P+D+V+ E R K M GL Sbjct: 689 HNFVGSRVFDVPVDQVTPELRRRVKAMSYG--------------LVYGLS---------- 724 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + + +++ + GV + D+ E Sbjct: 725 --------------------AFGLSQQLGIPAGEAKSIMESYFERFGGVKKYLDDVVEQA 764 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 RR ++ D + Sbjct: 765 RKDGYTATLF--------------------------GRRRYLPELNSDNRLARENAERA- 797 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M + ++L VHDE+V E V Sbjct: 798 --------ALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQV 849 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M +PL+ + Sbjct: 850 REILEREMDSAIE--LNVPLEVSAGAGTDW 877 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 94/660 (14%), Positives = 182/660 (27%), Gaps = 150/660 (22%) Query: 33 CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 A+AW + D + P + ++ + L Sbjct: 345 VAFAWGNSEKIYVSKNLDLLTEMKFPEN-----------------TYDFKKNRVLLSHLN 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 I++P ++ + K + T E F KG+ + Sbjct: 388 IELPLVKF-DAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI-------FGKGTKLAL 439 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P D +H+ K + A ++ LSD E L + + G + Sbjct: 440 PDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQ 499 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + ++ ++ L +I L + L + LF + + ++ T Sbjct: 500 NTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYST 558 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL + + L ++ DG++ ++TGR Sbjct: 559 AVDVLEDLAALSPVVAKILEYRQINKEQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRL 617 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R + S L+ +D Sbjct: 618 SSVDPNLQNIP------------------------VRLEEGRKIRKAFVPSQDSLLLSSD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 654 YSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGI--------------------- 692 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + T+ +A + + A + Sbjct: 693 ----------------------EKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITR 730 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + ++ G+ +++ + Sbjct: 731 KDAKNYIETYFERYPGIKTYMENIVREARDKG--------------------------FV 764 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 S RR D+ + R + +Q + DIL M N K Sbjct: 765 ETMSHRRRKIPDINARNFNVRGFA---ERTAI------NSPIQGSAADILKIAMINLDKA 815 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDEI+ + P + L M + A +PLK + K + Sbjct: 816 LTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEAIELA--VPLKVDDNTGKTW 873 >gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] Length = 889 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 187/665 (28%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + + ++L + + V ++ + Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPIFKEFLEKTS-LKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 LG+++ + + + + + + + KG + Sbjct: 395 LGLNLQAPAF-DSRLAKYLLSTVEN-NEISTIASLYSQTY----LVDDETFYGKGVKKAI 448 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P H+ A ++ V +L L D E+ L + + G ++ Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257 + +L++Q ++L ++I +L + L + LF G+ Sbjct: 508 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL+ + + L + + DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 722 NFGVVY-----GISDFGLANNL-------------------------------------- 738 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ +++ Sbjct: 739 -GISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK---------------- 781 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ + R + +Q + DIL M Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 K ++L VHDEIV E P + +V L M + +PL A+ Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEAIQ--LSVPLIADEN 880 Query: 669 EAKRY 673 E + Sbjct: 881 EGATW 885 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 100/662 (15%), Positives = 188/662 (28%), Gaps = 165/662 (24%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--DI 88 A A V+ + L ++L + + + ++ + DI Sbjct: 496 VAFAVAVAGCEVQYSGPVQG------LARHLASAKRI-----ATPDVKALLRSHALWRDI 544 Query: 89 PSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 P RW + A P + G L+A + Sbjct: 545 PGDRWFDLGLAAYLLD-PEERDYGWPRLAARWGDMLDRSTDNPG--LLALEMAQGMAGRL 601 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + ++ E L + + + G +D Sbjct: 602 AGASLDTLMRTL---------------------------ELPLVPVLADMEEAGIAVDRT 634 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGT 260 + + E ++ +++ K G + R L LF G+ V + T Sbjct: 635 AFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGGQATT 693 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + L + DLIL+ L L + V GR+ T A+ TGR Sbjct: 694 SQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDDAGRIHSTFNQL-ATATGRL 752 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P G +RSC A+ G LV AD Sbjct: 753 SSSNPNLQNIP------------------------ARGDLGRRMRSCFTAAEGNLLVSAD 788 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA ++ + + AF G DI+ T ++T + V+ +QR K + Sbjct: 789 YSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTINF--- 845 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ + + ++ Sbjct: 846 -----------GLIYGMGP------------------------------QKLGQELRITV 864 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + ++ Q + + ++ Sbjct: 865 NEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTL----------------------- 901 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619 + RR + ++ + + SQ R+ ++Q + DI+ M A Sbjct: 902 ---AGRRRLLPEMHSENT---QLRSQARRQAI------NTLIQGSAADIIKLAMLAAHDD 949 Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS--WAKGLPLKAEGYEAK 671 ++L VHDE++ E P+ + L LM++ +PL + K Sbjct: 950 PVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGK 1009 Query: 672 RY 673 + Sbjct: 1010 DW 1011 >gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] Length = 787 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 90/705 (12%), Positives = 185/705 (26%), Gaps = 122/705 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---KLWDRTEQSA------- 52 ++ +D ET GV + + ++ V S Sbjct: 148 EVALDTETT--------GVEWW---DRTVGLSLTFEFGDVEENFYIPYGHTSDHEQLTRG 196 Query: 53 -MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + L +L + V HNS F+ + K GI I + + T + L Sbjct: 197 YVMKKLKPHLEKKGTKLVLHNSKFDSHMLLK-DGITIRNNIYFDTMIAHSVLNENDEKGL 255 Query: 110 KNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 K F M G+ + + CT Y + Sbjct: 256 KAIATKYGRFFGFEDKSMSFGELFSNKPEAFYSNESMELCTFYACKDTHLCLKLYKWQLS 315 Query: 168 EATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + +L + E+ L + + G+ ID + + E L++ + + Sbjct: 316 --MMKKQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADMYKTELQAEVSDLEQKMTR 373 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L L+ + + L + LIL + Sbjct: 374 RFGE--INLNSPAQLSALLYDELKLPDISGKRKADAKTLQKLVKHESDLKLILEYRDLNK 431 Query: 287 SAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L E V+ + G+L + A+ T R++ QNLP Sbjct: 432 LLTTYVEPLPEKVNKNTGKLHSSFNQS-ATVTSRFASKDPNLQNLP-------------- 476 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 R I+A G + D + IE R LA ++G+ + N Sbjct: 477 ----------------PKARKLIVAPKGYLIFGIDYSQIEPRTLAHMSGDAGLQYPYLNN 520 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+Y + +K F P + + + Sbjct: 521 IDLYASLASKIFKLPYEAC-----------------------LEADGETY--------KK 549 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + P A + + + + + + Sbjct: 550 AGLPKHPRKMMKVGLLAVMYGITVPSLAESLGISVPEAQKFMDDFYSSYPEMTAWMAKQV 609 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 +R ++ + + +H + + ++ + N Sbjct: 610 AHADETGYVETMQGRKRRFIGHTVIAKHYHA-LHAKVVNILGREPENIWREPLPRNLKKQ 668 Query: 586 QLMRERTY---GGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSET 636 + Y I+Q + +L + M G+ ++ T+HDE++ Sbjct: 669 YWEVNKDYQRVARMSVNAIIQGSAALMLKKAMIAVNAHLERKGAGWKMMATIHDELLFLI 728 Query: 637 PDT--------PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ + + +PLK + R+ Sbjct: 729 PEAVTPEEIIEIENIMKDVVK---------LDVPLKVDTEVMIRW 764 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 97/563 (17%), Positives = 161/563 (28%), Gaps = 131/563 (23%) Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------- 183 L+A + + P R + E T L + L P D Sbjct: 452 LVAYLLDPANTNMPIVAERY----LRTTWPEDAATRAAITYRLLQDLPPHLDEARRKLYE 507 Query: 184 --ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + + + RG R+D D + L E +A L+ +I +L + R L Sbjct: 508 EVEKPLSAVLKRMEVRGVRLDSDYLRGLSEALAGRIATLEAEIHRLAGREF-AIRSRDQL 566 Query: 242 RMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L+ G+ ++ T S L +L L+ L Sbjct: 567 ETVLYDELGLASGKKTKLTGKRSTAVSALEPLRNEHPIIPALLEYRELEKLRGTYLDPLP 626 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V+ GRL T A TGR S QN+P Sbjct: 627 NLVNPRTGRLHTTFSQTTA-ATGRLSSLNPNLQNIP------------------------ 661 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R IA G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 662 IRSELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQ 721 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 D ++ QR K + G+ Sbjct: 722 VLGLAEDAITPNQRRAAKTVN--------------FGVLYGMS----------------- 750 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + + + G+ + + Sbjct: 751 -------------AHRLSNELGIPYAEAAQFIDVYFNTYPGIRRYIER------------ 785 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + + ++ RR ++K + A +L Sbjct: 786 --------------TLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERL-------- 823 Query: 596 KLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 +Q + DI+ M + G ++L VHDE++ E P T V L + Sbjct: 824 -AYNMPIQGTAADIIKIAMVRLDQELDALGARLLLQVHDELLIEAPATQADRVAALTREV 882 Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673 M + +PL E + Sbjct: 883 MEQAAH--LSVPLAVEVGTGPNW 903 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 110/669 (16%), Positives = 191/669 (28%), Gaps = 135/669 (20%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERIL 79 A +T A A D +Q + L +L D V H++ + Sbjct: 334 HWSAGTGDVTSLALATTDGLAAWV-AADQLDVADQTALAGWLADPKRPKVLHDAKGPMLA 392 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 G+ + T++ A + L ++++G A + Sbjct: 393 LA-AWGLPLAGLD-RDTALSAYLARPDQRSYDLA-DLTVRYLKRELKQGGADDGQLSLDG 449 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 +D H +A + D E RL+ D E L L + G Sbjct: 450 LDDRNAGEIEMLHARA--VLDLAAALDDELEERGGTRLLN--DIELPLVDLLAKMEQTGI 505 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +D D + L+ A E + E + I + L+ LF G+ ++ Sbjct: 506 AVDTDHLEALESHFAAEVRDAAEQAFGVIGKEI-NLGSPKQLQAVLFDELGMPKTKRTKT 564 Query: 260 -------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 L+++ + L L+ +R S + L + V+ DGR+ T Sbjct: 565 GYTTDADALQALYVKTEHPFLLH-LLRHRDVSRLRQT--IEGLLKTVAGDGRIHTTFNQT 621 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A TGR S QN+P +R + Sbjct: 622 IA-ATGRLSSTEPNLQNIP------------------------IRTEEGRRIREGFVVGP 656 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + L+ AD + IE R++A ++ +D I+AF +G D + T A+ F+ P D V+ E RA Sbjct: 657 GYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAK 716 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K M L GL Sbjct: 717 IKAMNYGL--------------AYGLS------------------------------AFG 732 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + + + + G+ + E Sbjct: 733 LGQQLGIEPSEARGLMDEYFQTFGGIRDYLGGVVEEARKAG------------------- 773 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 RR D+ D ++ +Q + D++ Sbjct: 774 -------FTETIWGRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADLIK 817 Query: 612 EGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 M N + ++L VHDE+V E + L M A +PL Sbjct: 818 IAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLVREQMGAAADLA--VPLD 875 Query: 665 AEGYEAKRY 673 + + Sbjct: 876 VSVGFGRSW 884 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 107/672 (15%), Positives = 188/672 (27%), Gaps = 144/672 (21%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D + L +L D H + Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL + L E + Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENP---QQQQL 466 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L+ E + + + Sbjct: 467 SLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 524 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +DLDL+ +LQ A + + + G + L+ LF + Sbjct: 525 EKAGIAVDLDLLSELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELQMPKT 583 Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T L +L ++ + ++ L +V+SDGR+ T Sbjct: 584 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 642 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P A +R + Sbjct: 643 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 677 Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +G +L+ AD + IE R++A ++ + I+AF GED++ ++AF PI++V+ E Sbjct: 678 VGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGEL 737 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K M GL Sbjct: 738 RRRVKAMSYG--------------LAYGLS------------------------------ 753 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + K+ + A+ A+ GV + E + Sbjct: 754 AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVL---------- 803 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR ++ + A + +Q + D Sbjct: 804 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 838 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 I+ M K I+L VHDE++ E + L M + Sbjct: 839 IIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 896 Query: 662 PLKAEGYEAKRY 673 PL+ + + Sbjct: 897 PLEVSVGYGRSW 908 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 76/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 118 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 176 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 177 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 235 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 236 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 295 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V + T+ ++TGR S QN+P Sbjct: 296 KVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 331 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 332 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 391 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 392 IFQVSEDEVTPNMRRQAKAVNF--------------GIPYGISDYGLAQN---------- 427 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 428 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 467 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 468 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 493 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 494 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 552 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 553 EVMEQAVT--LRVPLKVDYHYGSTW 575 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 89/614 (14%), Positives = 174/614 (28%), Gaps = 129/614 (21%) Query: 75 FERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGK 129 ++ + L I++P ++ + K + T E Sbjct: 374 YDFKKNRVLLSHLNIELPLVKF-DAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI-- 430 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 F KG+ + P D +H+ K + A ++ LSD E L Sbjct: 431 -----FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAE 485 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G + + + ++ ++ L +I +L + L + LF Sbjct: 486 VLAKMEITGISVSQNTLEEIGAENEEKLALLTREIYELAGEEF-NINSPKQLGVILFEKL 544 Query: 250 GIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 + + ++ T +L IL + + L ++ DG++ Sbjct: 545 QLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIH 604 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 ++TGR S QN+P +R Sbjct: 605 TRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEEGRKIRK 639 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 640 AFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGI------- 692 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + T+ +A + + Sbjct: 693 ------------------------------------EKAEDVTANDRRNAKAVNFGVVYG 716 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A + + + + ++ G+ +++ Sbjct: 717 ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKG-------------- 762 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + S RR D+ + R + +Q + Sbjct: 763 ------------FVETMSHRRRKIPDINARNFNVRGFA---ERTAI------NSPIQGSA 801 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 DIL M N K ++L VHDEI+ + P + L M + A Sbjct: 802 ADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEAIELA- 860 Query: 660 GLPLKAEGYEAKRY 673 +PLK + K + Sbjct: 861 -VPLKVDENTGKTW 873 >gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 861 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 94/682 (13%), Positives = 172/682 (25%), Gaps = 147/682 (21%) Query: 13 PQPLPKVGVWAYAE-------QAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQYLR 62 L + G YA A + A + D + D + +A L + Sbjct: 302 SPDLLQDGALVYANVDNESYYDAQLYGFAISLQD-RTEYIELSDALQDTAFLEWLKE--E 358 Query: 63 DETVMCVAHNSLFERILFKKTL-GIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFS 119 + ++++ F L +IP + A S F Sbjct: 359 NGK-------AVYDAKNFYHALHKNNIPFADVTFDVMIAAFLVDGTLSDYDKLAEKYQFD 411 Query: 120 EHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L K GK + D + +ELF + Sbjct: 412 RSLLKDDVFGKKGKGKL--VDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFTTI- 468 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E L + + G L + ++ + + + L I ++ + Sbjct: 469 -----EMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGMEF-NINSP 522 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 L L+ G+ T +L L+L LS+ Sbjct: 523 KQLAGILYDELGLKAGKKR-STAADVLEKLASQHPMIPLLLEHRKYQKIYSTYAVGLSKH 581 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V DG++ ++TGR S QN+ Sbjct: 582 VLKDGKIHTIFNQIQ-TQTGRLSSSEPNLQNI------------------------SVRD 616 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +AS G L+ AD + IE R+LA +A E+ I AF +G DI+ T + F+ Sbjct: 617 EEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQIFD 676 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 D V R K + G S+ Sbjct: 677 VEHDAVDANMRRSAKTVNF--------------GIVYGQSDFGLSEQ------------- 709 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + A + + Sbjct: 710 -----------------LGITRKEAHAFIDKYFASYPNIKNFMDTTIAFCEEHGYVKTLF 752 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + RR ++ + + Sbjct: 753 N--------------------------RRRYIKEISDKNYMMREFGKRA---------AM 777 Query: 599 ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651 +Q + D++ M + K ++L +HDE++ + + + T+ M Sbjct: 778 NAPIQGSAADLIKLAMIHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGM 837 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 +PL AE + + Sbjct: 838 QHAMK--LRVPLIAEANIGRTW 857 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 95/661 (14%), Positives = 182/661 (27%), Gaps = 146/661 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQS--AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + A DE D ++ + L Y D + ++ N+ E +++ K G+ Sbjct: 337 KVEGLTVA-SDEEACYIDTSDLDLAELIDKLQPYFEDYELNKLSLNTK-ENLIYLKEQGV 394 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ + + + K + Sbjct: 395 EVKGISF-DPLLADYLLRPSA---------------------KEQDLESILTDQLQMELE 432 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLD 204 T + Q K + T +L + + D E L + + G +D D Sbjct: 433 KTESEAETEVQQVRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNGIAVDQD 492 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTL 261 ++ +L + ++ L +L + L LF G+ T Sbjct: 493 MIQELSNKLEEKLDSLRSRAYELAGEEF-NLNSPKQLGEILFEKLGLPVIKRTKTGYSTS 551 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 S+L LIL ++ L + ++ R+ + + TGR Sbjct: 552 ASVLEKLEDKHEIVPLILEYRKYQKLKSTYVDPLPDLINPKTERIHTSFNQLV-TATGRL 610 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R +A K+L+ D Sbjct: 611 SSTEPNLQNIP------------------------IRTEEGRRIRKVFVAEERKELLAVD 646 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I A+ G+DI+ T A+ F +VS +QR K + Sbjct: 647 YSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASEVSYQQRRRAKAINF--- 703 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ ++++ + Sbjct: 704 -----------GIAYGISPWGLAKDI------------------------------NVSK 722 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 E + ++ V + + ++ Sbjct: 723 QEAEDYINQYLNRYPKVKEYMDHQIKQAKEEGYVTTILN--------------------- 761 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616 RR ++ S R +Q + DI+ M Sbjct: 762 -----RRRYLPEINSSN---YHRRSFGERMAI------NTPIQGSAADIMKLAMLESARV 807 Query: 617 ATKNGY--DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + I+L VHDE++ E P V + + M +PLK + + Sbjct: 808 LDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDVIE--LDVPLKVDLKVGSNW 865 Query: 674 R 674 R Sbjct: 866 R 866 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 78/566 (13%), Positives = 164/566 (28%), Gaps = 129/566 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A L + + Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWALERPFLDELRRNEQDRL 473 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ E +A++ + +++ I +L + Sbjct: 474 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEF-NINSPK 532 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL-NRLASSGSAILKLNTL 295 L + LF + ++ S+ T +L + IL + + L Sbjct: 533 QLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGL 592 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + V D + T+ ++TGR S QN+P Sbjct: 593 LKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------ 628 Query: 356 PLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 629 IRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAM 688 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F D+V+ R K + G+ +QN Sbjct: 689 DIFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN--------- 725 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + GV + +++ + Sbjct: 726 ---------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYV 764 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 + RR D+ + + ++ Sbjct: 765 TTLLH--------------------------RRRYLPDITSRNFNVRSFAERM------- 791 Query: 595 GKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 792 --AMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLV 849 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 850 PEVMEQAVT--LRVPLKVDYHYGSTW 873 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 96/666 (14%), Positives = 176/666 (26%), Gaps = 153/666 (22%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 A++W ++ + ++ L + ++ + LGI++P Sbjct: 345 LAFSWGNKEAIYVSKNLDLLKDRLFVEALSKP--IKT-----YDFKRSKVLLSHLGIELP 397 Query: 90 SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + + L L K E A+ Sbjct: 398 TADF-DSRLAKYLLSTVEDNELSTIASLYG-QTPLAKDVEVYGKGAKKAVP--------- 446 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRI 201 +Q + VE L ++L D E L + + G ++ Sbjct: 447 ---EDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITGIKV 503 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDM 256 + + ++ L ++I + + L LF G+ Sbjct: 504 NRQTLKDMEVENQVTLDALTQEIYDMAGQEF-NINSPKQLGTILFEEMGLPTSMTKKTKT 562 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L IL + + L + + DG++ ++ Sbjct: 563 GYSTAVDVLERLAPHAPIVAKILEYRQIAKLQSTYVVGLQDFILDDGKIHTRYLQ-DLTQ 621 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R Sbjct: 622 TGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFTPEWEDSV 657 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+G++ I AF NGEDI+ T + FN + V+ R K Sbjct: 658 LLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRNAKA 717 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L Sbjct: 718 VNFGVVY-----GISDYGLSQNL------------------------------------- 735 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + A + + + G+ + + Sbjct: 736 --GISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVETLFK--------------- 778 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+ + R + +Q + DIL M Sbjct: 779 -----------RRRTLPDINSRNFNIRNFA---ERTAI------NSPIQGSAADILKIAM 818 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 N + ++L VHDEIV E P+ ++ L M A +PL A+ Sbjct: 819 INLDQALEAGSFKTKMLLQVHDEIVLEVPNAELSAIKKLVKKTMESAIVLA--VPLLADE 876 Query: 668 YEAKRY 673 K + Sbjct: 877 NSGKTW 882 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 66 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 106 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 107 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 155 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 156 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 214 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 215 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 274 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 275 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 309 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 310 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 369 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 370 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 424 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 425 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 471 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 472 -----------------MKLAMVKLFPRLEEMG--------------------------- 487 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 488 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 532 Query: 668 YEAKRY 673 + + Sbjct: 533 GIGEDW 538 >gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367] gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367] Length = 886 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/658 (13%), Positives = 186/658 (28%), Gaps = 127/658 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + +D+ D P L L + + ++ + ++ + Sbjct: 340 AELAGFVIGHNDQWWVSRDTALLQQAP--LKGLLENADIAKQVFDAKRTFVALQR---LA 394 Query: 88 IPSKRWICTSVL-ARTN---GLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDS 142 + C +L + + L + + GK A Sbjct: 395 VTLTGVDCDLLLGSYLLNTYDNSNDLGRLAMEHGYHQVATDEDVYGKGAKAAIPDDDDVF 454 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + +A ++ + D E T L++ D E + + + G ++ Sbjct: 455 FSHLARKARAIEQLRPQIFKDLADNEQTD-LYR------DIELPMAFVLARMEVAGITVE 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + + ++ ++++ I + L LF G+ ++ ++ Sbjct: 508 ASELEAMGSKFTEQLAEIEQTIYNEAGEEF-NIGSPKQLGHILFEKMGLPVIKKTKTGYS 566 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L + IL + + L + + D + T ++TGR Sbjct: 567 TAVGVLEKLAAEAPIAENILKYRKIAKIQSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGR 626 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + ++ Sbjct: 627 LSSVDPNLQNIP------------------------VRNEEGRAIRKAFVPSHPDWEIFS 662 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437 +D + IE RVLA ++ + +AF G+DI+ T + F P ++V+ R K + Sbjct: 663 SDYSQIELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVNF 722 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y + + + + FE++ +++ M Q E + Sbjct: 723 GIVYG-----ISDFGLSQNIGISRKQAKAFIDTYFEEYPGVKAYTERMVQQAHELGYVET 777 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556 + R + + + SA + + + M + + Sbjct: 778 IAHR---------RRYLPDINSRNFNQRSFAERTAMNTPIQGSAADIIKIAMIRMEQALK 828 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 D +QA M Sbjct: 829 D--------------------------------------------MQAT--------ML- 835 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P + ++ L S+M +PLK E + + Sbjct: 836 ---------LQVHDELIFEAPASEIDTLAKLVPSVMDSAIE--LEIPLKVESHYGPTW 882 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 104 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 152 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 153 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 211 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 212 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 271 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 272 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 306 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 367 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 421 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 422 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 468 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 469 -----------------MKLAMVKLFPRLEEMG--------------------------- 484 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 485 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 529 Query: 668 YEAKRY 673 + + Sbjct: 530 GIGEDW 535 >gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 91/673 (13%), Positives = 188/673 (27%), Gaps = 153/673 (22%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKK 82 A I A ++ A P + +L DET S+F+ + K Sbjct: 32 HDAPIVGIAV-VNEHGRFFLRPETALADP-QFVAWLGDETKKK----SMFDSKRAAVALK 85 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK-ALIARFCKGSID 141 GI++ + L + + Sbjct: 86 WKGIELXGVSFD---------------LLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDE 130 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLD 191 + + + E+ R A EL + + + E+ L + Sbjct: 131 AVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSIL 189 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ++D + ++ + +A++ +++ I +L + L + LF + Sbjct: 190 AEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPKQLGVILFEKLQL 248 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ ++ T +L + IL+ + L + V + T Sbjct: 249 PVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHT 308 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + ++TGR S QN+P +R Sbjct: 309 IFNQALTQTGRLSSTEPNLQNIP------------------------IRLEEGRKIRQAF 344 Query: 369 IASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + S + AD + IE RVLA IA +D ++AF DI+ T F D+V+ Sbjct: 345 VPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPN 404 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + G+ +QN Sbjct: 405 MRRQAKAVNY--------------GIVYGISDYGLAQN---------------------- 428 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + GV + +++ + + Sbjct: 429 --------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLH-------- 472 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR D+ + + ++ +Q + Sbjct: 473 ------------------RRRYLPDITSRNFNVRSFAERM---------AMNTPIQGSAA 505 Query: 608 DILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKG 660 DI+ + M + + ++L VHDE++ E P + L +M + + Sbjct: 506 DIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT--LR 563 Query: 661 LPLKAEGYEAKRY 673 +PLK + + + Sbjct: 564 VPLKVDYHYGSTW 576 >gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 76/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V + T+ ++TGR S QN+P Sbjct: 297 KVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNY--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 95/600 (15%), Positives = 175/600 (29%), Gaps = 144/600 (24%) Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 I RW + A + + G L + + Sbjct: 400 GIDPARWFDLGLAAYLLNPEE------RDYGWPRLAARW--GDELERSSGNPGLLALEMA 451 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + + R L E L + + G +DLD Sbjct: 452 GALSG--------RLAGAQLSRLMRTL----------EMPLIPVLADMEAAGIAVDLDAF 493 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262 + E +L D+ K G + R + L LF G+ ++ T + Sbjct: 494 AAFLREVQGELDRLTRDVYKAAGGEF-NIRSSQQLAELLFGTLGLPTGGKTKGGQTSTAQ 552 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + D IL L L V GR+ T A+ TGR S Sbjct: 553 DVLEKLSGRHPVVDAILEFRKLEKLRSTYLEPLPRLVDGAGRIHTTFNQL-ATATGRLSS 611 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P G +R+C A+ G +LV AD + Sbjct: 612 SNPNLQNIP------------------------VRGDLGRRMRTCFTAAPGLRLVSADYS 647 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA ++ + + AF G DI+ T + ++ D+VS +QR K + Sbjct: 648 QVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRNAKTINF----- 702 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ + A + ++ T Sbjct: 703 ---------GLIYGMGP------------------------------QKLAQELRIPLTE 723 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + +K Q + + + + + Sbjct: 724 AKAFIERYFSKLQKLREFYDEAETTARELGYVTTM------------------------- 758 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------N 616 + RR + ++ + + SQ R+ ++Q + DI+ M Sbjct: 759 -AGRRRLLPEIHSENT---QLKSQARRQAI------NTLIQGSAADIIKLAMLAAHADPE 808 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT--KNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + L ++M+ + A +PL + + + + Sbjct: 809 LRALNARLILQVHDELLLEVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWGQGENW 868 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 104 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 152 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 153 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 211 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 212 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 271 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 272 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 306 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 367 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 421 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 422 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 468 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 469 -----------------MKLAMVKLFPRLEEMG--------------------------- 484 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 485 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 529 Query: 668 YEAKRY 673 + + Sbjct: 530 GIGEDW 535 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 61 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 101 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 102 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 150 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 151 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 209 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 210 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 269 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 270 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 304 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 305 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 364 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 365 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 419 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 420 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 466 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 467 -----------------MKLAMVKLFPRLEEMG--------------------------- 482 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 483 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 527 Query: 668 YEAKRY 673 + + Sbjct: 528 GIGEDW 533 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 62 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 102 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 103 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 151 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 152 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 210 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 211 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 270 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 271 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 305 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 306 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 365 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 366 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 420 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 421 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 467 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 468 -----------------MKLAMVKLFPRLEEMG--------------------------- 483 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 484 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 528 Query: 668 YEAKRY 673 + + Sbjct: 529 GIGEDW 534 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 84/597 (14%), Positives = 158/597 (26%), Gaps = 129/597 (21%) Query: 92 RWICTSVLARTNGL---PSSLKNACLALNFSEH-LTKMEEGKA-LIARFCKGSIDSPPYD 146 + + A ++ K GK L F + + Sbjct: 392 QIQDVGIQAYLLNPLQSAYDYEDIARDYLRQMLPSRKEVCGKKALEEVFSQEEEKTVQMA 451 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + R+ E EL+ ER + G ++ D + Sbjct: 452 AYLSYVPFHAYPLVLEKLREAEME-ELY------LTIERPTVATLYDMEKYGITVEKDAL 504 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + + ++L+++I + G + L + LF + ++ T Sbjct: 505 KEYGDQLVGRIEELEKNIYEQA-GKTFNINSPKQLGVILFEDLKMPFAKKTKTGYSTSAD 563 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL IL + + L+ + DG++ + TGR S Sbjct: 564 ILEKLAPDYPIVSNILEYRQLTKLKSTYADGLAAFIQEDGKIHSIFHQ-KVTATGRLSSS 622 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R + +G V AD + Sbjct: 623 DPNLQNIP------------------------IRMPLGRAIRKVFVPDSGYVFVSADYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA +AG++ I A+ +GEDI+ T ++ F P ++V+ R K + Sbjct: 659 IELRVLAHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNF------ 712 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + K+ Sbjct: 713 --------GIVYGIS------------------------------AFGLSQDLKISRKEA 734 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + A + G+ R Sbjct: 735 SEYIDKYFATYPGIKTYLDGNVAFAKKEGYVKTLYGRVRPIPELSSSNFMQ--------- 785 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------ 617 G+ +N++ +Q + DI+ M Sbjct: 786 --------RSFGERVAMNSS------------------IQGTAADIIKIAMIRVSKRLQE 819 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L +HDE++ ET + V + M +PL + E K + Sbjct: 820 EKLASRLILQIHDELLIETKEDEVEEVRKILKEEMMGAAD--LKVPLSIDIEEGKTW 874 >gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form). gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form) Length = 580 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 76/565 (13%), Positives = 163/565 (28%), Gaps = 128/565 (22%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181 + ++ + + E+ R A EL + + Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + G ++D + ++ + +A++ +++ I +L + Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF + ++ ++ T +L + IL+ + L Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V + T+ ++TGR S QN+P Sbjct: 297 KVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + AD + IE RVLA IA +D ++AF DI+ T Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F D+V+ R K + G+ +QN Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNY--------------GIVYGISDYGLAQN---------- 428 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + GV + +++ + Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + + ++ Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ + M + + ++L VHDE++ E P + L Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + +PLK + + + Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 63 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 103 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 104 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 152 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 153 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 211 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 212 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 271 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 272 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 306 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 307 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 366 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 367 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 421 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 422 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 468 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 469 -----------------MKLAMVKLFPRLEEMG--------------------------- 484 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 485 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 529 Query: 668 YEAKRY 673 + + Sbjct: 530 GIGEDW 535 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 149/658 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILF-KKTLG 85 A IT A E L + Q L D V VA + + L Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398 Query: 86 IDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 +I + + + A + + E + Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN-------------KFEPLELVKEYIPGAGEFANLAE 445 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 A +++ E L L + E L + + +G +D+ Sbjct: 446 EASALAQVADSYKETLE--------ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQ 494 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + + + E ++L+++I G + L LF G+ + ++ T Sbjct: 495 RLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTD 553 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 L + +L+ S +N L + GR+ T Q + TGR S Sbjct: 554 ADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQQTV-TATGRLS 611 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380 QN+P +R G L+ AD Sbjct: 612 STEPNLQNIP------------------------IRLELGRLLRKVFTPTQEGWVLLSAD 647 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA + ++ ++F+ +D++ T ++ F P+ +V+K+ R K + Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 GL + Sbjct: 705 -----------GLIYGLTDF------------------------------GLGRDLGVPR 723 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + +++GV + +++ Q ++ R R R Sbjct: 724 KEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQ------ 777 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 G+ +NT +Q + DI+ M + Sbjct: 778 -----------RQFGERIAMNT------------------PIQGTAADIMKLAMLGVAEA 808 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE+V E V + M +PL A+ + Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 115/674 (17%), Positives = 203/674 (30%), Gaps = 125/674 (18%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A A D D T A L +L D + H + ++ G + Sbjct: 364 GLAIAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEVKWGIHAL-RSRGWTLAG 422 Query: 91 KRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 TS+ A +L + L E G ++ D Sbjct: 423 VT-SDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSGDGQLSLLD---DDGGAAKL 478 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + ++A + D E R L L++ E L + + G +D+D Sbjct: 479 AEQHMLEARAVVELAEVLDTELDRI--DSLPLLTEMELPLAFVLADLEAAGIAVDVDHFG 536 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260 +L++ AQ ++ + G + L+ LF + Sbjct: 537 ELEKNFAQRI-RVAANAAYDVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKTGYTTDADA 595 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+++ + LA +L ++ + ++ L ++V+ DGR+ T A TGR Sbjct: 596 LQALYEKTEHPFLAH--LLEHRDATRLKVT-VDGLLKSVADDGRIHTTFNQTIA-ATGRL 651 Query: 321 SGCVFQPQNLPRQERSEEILTQTI-------------QALNRGETIADPLGLASDCVRSC 367 S QN+P + + + Q G + D +G S Sbjct: 652 SSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSGHD 711 Query: 368 IIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 +G L+ AD + IE R++A ++ + I+AF GED++ ++AF PID+V+ Sbjct: 712 GGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTT 771 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 E R K M L GL + +K Sbjct: 772 EMRHRVKAMSYGL--------------AYGLSAFGLAAQLK------------------- 798 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + A+ A+ GV D+ Sbjct: 799 -----------ISRDEAKEQMDAYFARFGGVRDYLHDVVAEARRNEYTATLF-------- 839 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR D+ D R ++ +Q + Sbjct: 840 ------------------GRRRYLPDLNSDN---------WQRRQSAERMALNAPIQGTA 872 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 DI+ M N K ++L VHDE+V E +V + M + Sbjct: 873 ADIIKVAMINVHKRLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAAIT--L 930 Query: 660 GLPLKAEGYEAKRY 673 +PL+ + + Sbjct: 931 SVPLEVSVGFGRSW 944 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 97/677 (14%), Positives = 195/677 (28%), Gaps = 149/677 (22%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQYLRDETVMCVAHNSL 74 K G+ A + + V + + S + + D + + N Sbjct: 321 KCGISIAKGDV-FAGVAICYKPDSVTFISCEGLITEEYLVSKIKEL--DCEIYTI--NLK 375 Query: 75 FERILFKKTLGIDIP--SKRWICTSVLARTNGL---PSSLKNACLAL-NFSEHLTKMEEG 128 L + +++A + + G Sbjct: 376 -------NHLEYFTDSYKDKIHDIAIMAYLLNPLLQEYEYNDIANDFMGITVEGRSDIIG 428 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--LSDGERD 186 K ++ + D + A + + + D EA + L + + D E Sbjct: 429 KNKVSSYLTDGFDKIVK-------LFALEAYVAFNSFD-EAMKRLRETDMEKVYHDIELP 480 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 + + +++ G ++ D + + + ++ + K L++ I K + L LF Sbjct: 481 VIYVLKSMEKYGIAVNKDALKQYGDELSVKIKDLEQSIYKEAGTEF-NINSPKQLGEVLF 539 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ T +L + D IL + + L+E + DG Sbjct: 540 EKLNLPCGKKTKTGYSTSADVLEKLSADYPIVDSILEYRTLAKLKSTYADGLAEYIV-DG 598 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T + TGR S QN+P Sbjct: 599 RIHSTFNQT-ITATGRISSTEPNLQNIP------------------------IRMELGRK 633 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G + AD + IE R+LA ++G+D I+A+ DI+ T +K F TP+D+ Sbjct: 634 IRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTPLDE 693 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ QR+ K + + Y + L Sbjct: 694 VTPRQRSNAKAVNFGIVYG-----ISSFGLSRDLS------------------------- 723 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + ++ + +L + RR Sbjct: 724 --------------ISKKEAKEYIDEYFNTYKTLKNYLDNLVKSAKENGYTKTIYGRRRP 769 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 L S + G+ +N+ Q Sbjct: 770 VP---------------ELSSGNFM--QRQFGERIAMNSPL------------------Q 794 Query: 604 AISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 + DI+ M N K ++L +HDE++ ET V + M + Sbjct: 795 GTAADIIKIAMINVYKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAAT 854 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL + + K + Sbjct: 855 --LRVPLAIDIHSGKDW 869 >gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300] gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300] Length = 889 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 96/665 (14%), Positives = 188/665 (28%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + + L ++L +T + V ++ + Sbjct: 345 DLVGFAWSCGDK----LYATDKLELLQEPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 L +++ + + + + + N I + KG + Sbjct: 395 LDLNLQAPAF-DSRLAKYLLSTVEN-NEISTIANLYGQTY---LADDEI-FYGKGVKKAI 448 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P H+ A ++ V +L L D E+ L + + G ++ Sbjct: 449 PEREKFLEHL-ARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMS 257 + +L++Q +KL ++I +L + L + LF G+ Sbjct: 508 KETLLEMQAENELIIEKLTQEIYELAGEKF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL+ + + L + + DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYVQ-DLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y L Sbjct: 722 NFGVVYG-----ISDFGLSNNL-------------------------------------- 738 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + G+ ++ Sbjct: 739 -GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------------- 781 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ + R + +Q + DIL M Sbjct: 782 ----------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIAMI 822 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 K ++L VHDEIV E P + ++ L M + +PL A+ Sbjct: 823 QLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAIKVLVKQTMEEAIQ--LSVPLIADEN 880 Query: 669 EAKRY 673 E + Sbjct: 881 EGATW 885 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 95/658 (14%), Positives = 182/658 (27%), Gaps = 149/658 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILF-KKTLG 85 A IT A E L + Q L D V VA + + L Sbjct: 344 ARITAWGIAVGGESFILNWTDAAPEVRLAFSQLLEDSEVPKQVA-----DSKVLYSLLLN 398 Query: 86 IDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 +I + + + A + + E + Sbjct: 399 EEIILRGVSLDIGLAAYLINPTRN-------------KFEPLELVKEYIPGAGEFANLAE 445 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 A +++ E L L + E L + + +G +D+ Sbjct: 446 EASALAQVADSYKETLE--------ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQ 494 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + + + E ++L+++I G + L LF G+ + ++ T Sbjct: 495 RLQEFGRELTVELQRLEQEIYADA-GETFNINSPQQLGHILFEKLGLPPMKKTKTGYSTD 553 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 L + +L+ S +N L + GR+ T Q + TGR S Sbjct: 554 ADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQQTV-TATGRLS 611 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVAD 380 QN+P +R G L+ AD Sbjct: 612 STEPNLQNIP------------------------IRLELGRLLRKVFTPTQEGWVLLSAD 647 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA + ++ ++F+ +D++ T ++ F P+ +V+K+ R K + Sbjct: 648 YSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAVNF--- 704 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 GL + Sbjct: 705 -----------GLIYGLTDF------------------------------GLGRDLGVPR 723 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + +++GV + +++ Q ++ R R R Sbjct: 724 KEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRRIPELRHPNRVQ------ 777 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 G+ +NT +Q + DI+ M + Sbjct: 778 -----------RQFGERIAMNT------------------PIQGTAADIMKLAMLGVAEA 808 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +++L VHDE+V E V + M +PL A+ + Sbjct: 809 LKPYRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFP--LSVPLIADCKTGPNW 864 >gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden] Length = 865 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 84/665 (12%), Positives = 183/665 (27%), Gaps = 147/665 (22%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 + ++ I + ++ + + ++ + + + ++ V +++ Sbjct: 333 TIALYIDITDNTINSMSLSYKEGTILYINKEHITHALDLIKPLFSLDHILKV----MYDV 388 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 K + D + +++ + + L + L + Sbjct: 389 KTLFKIIQEDTNITAFDDILIMSYSLD--AGLHD-----------------HTLKNIIIR 429 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + ++ R+ E+ L + + Sbjct: 430 NIDKHDITNENITASTLLSLHTALRRNLFTNQLCTIYYRI------EKPLINVLHNMEKI 483 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM- 256 G ID ++ KL + + L+E I KL+ + + L LF GI Sbjct: 484 GIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEF-NIASSRQLSTILFDKMGIKKGKKL 542 Query: 257 ---SEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + T +L D IL + + L++ + ++ T Sbjct: 543 SSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSM 602 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ TGR S QN+P + +R+ IA + Sbjct: 603 TSTVTGRLSSSNPNLQNIP------------------------IRSEEGNAIRNAFIAKS 638 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KL+ AD + IE R++A IA AF+ +DI++ T + FNT Sbjct: 639 GYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT------------- 685 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 ++ + + Sbjct: 686 ---------------------------------QNIDKKLRRKAKSINFGIIYGISPFGL 712 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A + + + + + + + +D+ Sbjct: 713 AKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVF-------------- 758 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ D+ + L + + +Q S DI+ Sbjct: 759 ------------GRKCFIKDINSNNHALRNFSERA---------AVNAPLQGTSADIIKM 797 Query: 613 GMKNATKN---GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGY 668 M + GY ++L VHDE++ E P+ +V + +M +PLK + Sbjct: 798 SMIHLFDRLKTGY-MILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDIT 854 Query: 669 EAKRY 673 + Sbjct: 855 IGDNW 859 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 94/530 (17%), Positives = 155/530 (29%), Gaps = 118/530 (22%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 G + E E L E L + + G ID + + + Sbjct: 491 ARLGLAMAQLFEQRMEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQ 550 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 +L + +L G + R L LF G+ ++ T + L Sbjct: 551 LDQLTAHVYELA-GTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQH 609 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 D IL L+ L V GR+ T A+ TGR S QN+P Sbjct: 610 PVVDSILQYRKLEKMRSTYLDPLPRLVDPQGRIHTTFNQ-KATATGRLSSSNPNLQNIP- 667 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 G +RSC IA G+ LV AD + +E RVLA + Sbjct: 668 -----------------------VRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHV 704 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + ++AF NGEDI+ T A ++ P D+VS +QR K + Sbjct: 705 SQDPALLEAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFG-------------- 750 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G+ + A + K+ T + + Sbjct: 751 LIYGMG------------------------------AQKLAQELKISTTQAKDFIARYFE 780 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + QG+ + ++ + + RR + D Sbjct: 781 RLQGLKEFYEGVEASARKHG--------------------------FVTTLGGRRRLLPD 814 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVL 626 + + ++Q + DI+ M + ++L Sbjct: 815 INSASGQAAALARRQA---------INTVIQGSAADIIKLAMLAVARDERLRELDARLLL 865 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTK--NPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P G L LM +PL + + Sbjct: 866 QVHDELLLEVPADAAEEAGALVARLMQDVCPAGKELSVPLLVDWGTGHDW 915 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 86/606 (14%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+ + +LA ++ + Sbjct: 354 DLAVLALREGLDLFPE--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 394 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + + +Q E K + L + E+ L + + Sbjct: 395 ----GEWTEDAGERALLAERLFQTLKERLKGEERL-------LWLYEEVEKPLSRVLARM 443 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L + E ++L+E++ +L + L LF G+ Sbjct: 444 EATGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 502 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L D IL + ++ L V GRL Sbjct: 503 GKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTR 562 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 563 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 597 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LVV D + IE RVLA ++G++ I+ F G DI+ T + F + V Sbjct: 598 VAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLM 657 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 658 RRAAKTINFGVLYGMSAHRLSGE-----LSIPYEEAVAFIERYFQSYPKVRAWIEGTLEE 712 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 713 GRRRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 759 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + L Sbjct: 760 -----------------MKLAMVRLFPRLQELG--------------------------- 775 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + E+V E P V L +M W +PL+ E Sbjct: 776 --ARMLLQVHD-----------ELVLEAPKDRAERVAALAKEVMEGV--WPLQVPLEVEV 820 Query: 668 YEAKRY 673 + + Sbjct: 821 GLGEDW 826 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 91/641 (14%), Positives = 178/641 (27%), Gaps = 126/641 (19%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D + L D + P+ +L D + + +S ++++ G+D+ + Sbjct: 350 DSHEIYLADWDQAIQSPA-FKAWLADASNQKILFDSKRDQVILANA-GLDLAGIDF-DIM 406 Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF----CKGSIDSPPYDCTRANHV 153 + L M +L+ KG+ + P +H+ Sbjct: 407 IANYLIDTH-----LAKELADMLTNNDMP---SLVKYDEAVYGKGAKQAVPDSAELNDHL 458 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + + E L + + +G ++D ++ + + Sbjct: 459 ANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGVKVDAQILADKNQAL 518 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI 270 + +++ +I L + L + LF + ++ ++ T +L Sbjct: 519 LERLAQMEAEIYDLAGEEF-NINSVKQLGVILFEKLELPIIKKTKTGYSTAADVLEKLAD 577 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL S L L + DG++ ++TGR S QN+ Sbjct: 578 KHPIIPAILEYRQISKLQGTYLAGLPTYIKEDGKIHSRFVQT-LTQTGRLSSADPNLQNI 636 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVL 389 P +R + G +L AD + IE RVL Sbjct: 637 P------------------------ARIEEGRRIRQAFVPAHEGWQLFGADYSQIELRVL 672 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGAKVF 448 A IA + I AF +GEDI+ T + F D + R K + + Y Sbjct: 673 AHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYG-----I 727 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 L++ + + FE + + + E + L Sbjct: 728 SDYGLSNNLNIPRKHAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKR------- 780 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R + ++ Sbjct: 781 --RRYLPDIDASNFNIRSFAER-------------------------------------- 800 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVL 626 + +N+ K+ +Q D + G ++L Sbjct: 801 ---------TAMNSPIQG---TAADIIKIAMVRIQ----D-------ALDEKGLQSRLLL 837 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 +VHDE++ E P + L +M +PLK E Sbjct: 838 SVHDEVILEGPAEEMEVLSDLVPDIMESCVE--LDVPLKVE 876 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 96/658 (14%), Positives = 186/658 (28%), Gaps = 146/658 (22%) Query: 34 AYAWDDEP-----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 A A+ D+ V+L D + + L Q+L H + + GI++ Sbjct: 355 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLA-SDTPKYFHEAKAAFHMLAG-RGIEL 410 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A R + ++ + + Sbjct: 411 AGIA-HDTALAAYLLRPGQRTYALADVY----------------QRHLQKTLSAATEQLS 453 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 ++ + T EL + +D E L + + G +D+D++ Sbjct: 454 LLDNSSLVDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 513 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++ ++ + + +L + L+ LF + ++ T Sbjct: 514 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 573 Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 + D +L L L + V DGR+ T AS TGR S Sbjct: 574 EIEQLAAKNPHPFLDHLLAHRKYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLS 631 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380 QN+P A +RS I +G +L+ AD Sbjct: 632 STEPNLQNIP------------------------VRTEAGRQIRSAFIVGDGFDELMTAD 667 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RV+A ++ + I+A+ GED++ ++ F+ P+D+V+ E R K M Sbjct: 668 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYG-- 725 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 GL + + + Sbjct: 726 ------------LVYGLS------------------------------AFGLSQQLGIPA 743 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + +++ + GV + ++ Sbjct: 744 GEAKSIMESYFERFGGVKKYLDEVVAQARKDGYTATLF---------------------- 781 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RR ++ D + +Q + DI+ M + Sbjct: 782 ----GRRRYLPELNSDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDRA 828 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V + M +PL+ K + Sbjct: 829 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 884 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 107/672 (15%), Positives = 188/672 (27%), Gaps = 144/672 (21%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D + L +L D H + Sbjct: 358 AYDADCTALAIVSADGEGRYIDTSALDPDDEAALASWLADPGPPKALHEAK-----LAMH 412 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL + L E + Sbjct: 413 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRYLRRELRAENP---QQQQL 466 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L+ E + + + Sbjct: 467 SLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 524 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 + G +DLDL+ +LQ A + + + G + L+ LF + Sbjct: 525 ENAGIAVDLDLLSELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELQMPKT 583 Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T L +L ++ + ++ L +V+SDGR+ T Sbjct: 584 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 642 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P A R + Sbjct: 643 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRTRDAFV 677 Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +G +L+ AD + IE R++A ++ + I+AF GED++ ++AF PI++V+ E Sbjct: 678 VGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGEL 737 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K M GL Sbjct: 738 RRRVKAMSYG--------------LAYGLS------------------------------ 753 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + K+ + A+ A+ GV + E + Sbjct: 754 AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVL---------- 803 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR ++ + A + +Q + D Sbjct: 804 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 838 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 I+ M K I+L VHDE++ E + L M + Sbjct: 839 IIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 896 Query: 662 PLKAEGYEAKRY 673 PL+ + + Sbjct: 897 PLEVSVGYGRSW 908 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 85/657 (12%), Positives = 178/657 (27%), Gaps = 129/657 (19%) Query: 30 ITLCAYAWDDEPVKLW--DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A + E D S + + D + ++ ++ + I+ Sbjct: 336 IEGIAV-VNKERASFIPTDIALNSNI---FKAWAEDPQKHKIVFDAKRTKVALLRN-NIN 390 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSP 143 + + + + + + N + GK + D Sbjct: 391 MQGI-IFDSLLASYLLNPAENNHDIPAIANRKSRSDVQFDEEVFGKGAKQK--VPEADVL 447 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 R + LF Y + + E L+ + E L L+ + G ++D+ Sbjct: 448 NEHVVRKTQL----LFDLYPEMEEELGNNEQYELLK--ELEMPLALILAEVEHYGVQVDI 501 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 D + + E + + L++++ +L G + L LF G+ ++ ++ T Sbjct: 502 DKLKDMGEDLKERLSTLEQEVYELA-GETFNLNSPKQLGPILFEKLGLPVIKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGR 319 +L +L + L + V D R+ ++TGR Sbjct: 561 AADVLEQLENEHDIIPKLLMYRQLGKLQSTYIEGLLKVVRKDTSRIHTRYNQA-LTQTGR 619 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + + + Sbjct: 620 LSSIEPNLQNIP------------------------IRLEEGRKIRQAFVPSKDNWIMFA 655 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IAG++ IKAF DI+ T F+ D+V+ R K + Sbjct: 656 ADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + F + +++ + + + Sbjct: 716 IVYG-----ISDYGLSQNLGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTI 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 + R + ++ + SA + + + Sbjct: 771 MKR---------RRYLPDITSRNFNMRSFAERTAMNTPIQGSAADIIKKAMIDLD----- 816 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 +K + N + Sbjct: 817 -------------HRLKEENLQANV-------------------------------LLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L E P+ + + +M +PLK + K + Sbjct: 833 HDE---LIL--------EAPENEIDKLKEIVPDVMENTVE--LDVPLKVDYSFGKSW 876 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 79/668 (11%), Positives = 188/668 (28%), Gaps = 139/668 (20%) Query: 25 AEQAVITLCAYAWDDEPVK------LWDRTEQ---------SAMPSDLLQYLRDETVMCV 69 +++ + + D + ++ + DL DE + + Sbjct: 315 IKKSKLMGFKF-ITDGKIYEGVDPTYIGLSDGVVTSFYEYSKDIVEDLRALFEDEKIEKI 373 Query: 70 AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKM 125 +++ + I+ + ID+ + + + ++ +S K Sbjct: 374 GYDAKEDVIILL-SKKIDLKNLTY-DSMIVEYLLDSTASSFEFQNIISKY---DLGSYKD 428 Query: 126 ---EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 GK + + + + F + + L + Sbjct: 429 EQSLLGKGVKKKSYSDLEKDELF---KYFSFILNGSFKLKEIQMEKLEELEMVDLYR--E 483 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G + ++ ++ + + + + L I +++ + T L Sbjct: 484 IELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEISGEEF-NINSTKQLG 542 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ ++ T + +L + IL + ++ L + Sbjct: 543 EILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPIIENILEYRKLTKLKNTYIDGLKALI 602 Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ G + TGR S QN+P Sbjct: 603 NEKTGRIHSRFNQTG-TSTGRISSTEPNLQNIP------------------------IRS 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +AS LV D + IE RVLA ++ + ++AF +G DI+ T ++ F+ Sbjct: 638 EEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFH 697 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + V+ R+ K + + Y L + + F+++++ Sbjct: 698 VDKEDVTDLLRSRAKAVNFGIVYG-----ISDFGLSRQLGITRELAKEYIDGYFDNFKKV 752 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + + + + + R + ++ + Sbjct: 753 KEYMDYEIETGKKQGYVKTIFNR---------RRYIPELSAKNFNIRSFGERIALNTPIQ 803 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + ++ V G+ N Sbjct: 804 GSAADII---------------------KIAMVKVYGEIKKRN----------------- 825 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSW 657 ++LT+HDE+V + + V L +M Sbjct: 826 ---------------------LKSKLILTIHDELVVDAVNDELEVVEELMKDIMENAVK- 863 Query: 658 AKGLPLKA 665 +PLK Sbjct: 864 -LNVPLKV 870 >gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025] gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025] Length = 878 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 90/654 (13%), Positives = 174/654 (26%), Gaps = 143/654 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 AW D+ + L + ++ + LGID+ Sbjct: 337 IGLAWGDDQAIYATTDTSLLTHDLFKEALSKP--IKT-----YDFKRGKVLLSHLGIDLL 389 Query: 90 SKRWICTSVLARTNG--LPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + + +++ + GK + P Sbjct: 390 TASF-DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDVYGKGAKR--------AIPEK 440 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +H+ + + +L L + E L + + G + + + Sbjct: 441 NVLLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETL 500 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTL 261 ++ E + L ++I L G + L + LF G+ T Sbjct: 501 QDMERANEIELQALTQEIYDLA-GEAFNINSPKQLGVILFEKLGLPLSATKKTKTGYSTA 559 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L IL + + L +++S DG++ ++TGR S Sbjct: 560 VDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRYLQ-DLTQTGRLS 618 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 619 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSD 654 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Sbjct: 655 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 714 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + Sbjct: 715 VY-----GISDFGLANNL---------------------------------------GIS 730 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A + + + ++ G+ + Sbjct: 731 RKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFH-------------------- 770 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ + + R + +Q + DIL M + + Sbjct: 771 ------RRRELPDINSRNFNIRSFA---ERTAI------NSPIQGSAADILKVAMIHLDQ 815 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 ++L VHDEIV E P+ ++ L M +PL A+ Sbjct: 816 ALKKGDYQSRMLLQVHDEIVLEVPNAELEAIQKLVKETMESAIE--LSVPLVAD 867 >gi|297626697|ref|YP_003688460.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 104/684 (15%), Positives = 180/684 (26%), Gaps = 141/684 (20%) Query: 11 RSPQPLP-KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMC 68 RS P+ + A I A+A + D E + L +L D Sbjct: 324 RSDDPIGVEATGHWGAGTGDIDTLAFATTSDDAACVDVPELTPDDEKALAAWLTDPQATK 383 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGL---PSSLKNACLALNFSEHLTK 124 H + + T + A L + L E + Sbjct: 384 AMHGAK---GPLLALWARQLDLAGLDSDTQLAAYLLRPDQRSYDLDDLALRHLGRELRVQ 440 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 E ++A + D E + L+ E Sbjct: 441 DSEQVNQETLDF-----GSERQPAETAMLRARAIAELAGVLDGELDDTSQRGLLHSL--E 493 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + RG ID+D++ +L+ + E G + L+ Sbjct: 494 MPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQA-AEQAAFAAIGTQINLGSPKQLQAV 552 Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 LF + ++ L+ + + L L+ R I ++TL + Sbjct: 553 LFDQLDMPKTKRTKSGYTTDADALEKLYQKTRHPFLEH-LLAYRDTIKLRQI--IDTLIK 609 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + S DGR+ T A TGR S QN+P Sbjct: 610 STSDDGRIHTTYVQTVAG-TGRLSSTDPNLQNIP------------------------IR 644 Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G + L+ AD + IE RV+A +G+ I AFA+G D + T + Sbjct: 645 TPEGRRIRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHV 704 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F+ P+++V+ QR+ K M L Y L+ Sbjct: 705 FDVPVEQVTPAQRSSVKQMNYGLAYG-----LSAYGLSSRLN------------------ 741 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + V L E Sbjct: 742 ---------------------VSVPEARALMDQYFQTFGPVRDYLDSLVEKARKQGYTET 780 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + RR D+ ++ Sbjct: 781 ML--------------------------GRRRYLPDLNSSNRQRRQMAERM--------- 805 Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 +Q + DI+ M + ++L +HDE+V E V + Sbjct: 806 ALNAPMQGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIVGD 865 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL + + Sbjct: 866 KMKHAIE--LTVPLDVSFGYGRSW 887 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 88/603 (14%), Positives = 167/603 (27%), Gaps = 145/603 (24%) Query: 87 DIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 D+ + R V A S + + ++ G I ++ + Sbjct: 426 DVDASRIFDVGVAAYLLESDRSSFTIPSLVEFYF----GVELSVGSDKIPAAAYEAVAAR 481 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 T ++ + + E L + + RG +D Sbjct: 482 ALKATLTKKLEDDKSLELFETI------------------EMGLLPVLAAMERRGLFVDP 523 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMS--- 257 + + + + + E I + G + L LF + G+ Sbjct: 524 AKLAEQSKELGADIASRVERIHEAA-GETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGF 582 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +LS T +L + L+ L + D R+ T A T Sbjct: 583 YSTNAKVLSDLADTYQIVADVLEYRERAKIKSTYLDALPALIRGDHRIHTTFNQTVA-AT 641 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P VR+ +G + Sbjct: 642 GRLSSSDPNLQNIP------------------------TRSELGHRVRTAFTVPSGHVFL 677 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE R+LA ++G++ I AF +G D + T ++ F P+++V+ E R+ Sbjct: 678 ACDYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRA----- 732 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 +A + + Q A K Sbjct: 733 ---------------------------------------KAVNFGIVYGQQAYGLATSLK 753 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + + A + GV + + E G +H R Sbjct: 754 IPRAEAQDMIDRYFAAYPGVRAYLDESV----RIAHEKGYAVTMYGRKRHIREFGQHNRQ 809 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + G+ + + + +Q + DI+ M Sbjct: 810 LI-------------AFGERTAM------------------NHPMQGSAADIIKIAMIRV 838 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L +HDE+ E P+ +V L M + +PL A+ Sbjct: 839 EKRLRKEGCAAKLILQIHDELDLEVPNDEIEAVSRLVKETMEEVVE--LKVPLIADVSYG 896 Query: 671 KRY 673 + Sbjct: 897 PNW 899 >gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] Length = 878 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 86/671 (12%), Positives = 173/671 (25%), Gaps = 145/671 (21%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYVSTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LG+D+ + + L + A + Sbjct: 377 SKVLLSHLGVDL-PAPAFDSRLAKYLL-STVDDNELSTI----AQLYTDYVLDSDEAVYG 430 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 KG + P +H+ + + ++ + ++ L D E+ L + + Sbjct: 431 KGVKRAVPEKAVLLSHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLANVLAKMEI 490 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G + + + ++++ L ++I L + L LF + Sbjct: 491 AGISVKKETLQEMEKANQAAIDNLTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYT 549 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL + + L + + DG++ Sbjct: 550 KKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGKIHTRYLQ 609 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 610 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 644 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 + L+ +D + IE RVLA I+ ++ I AF G DI+ +T + F + V+ R Sbjct: 645 TADEVLLSSDYSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDR 704 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ + N Sbjct: 705 RNAKAVNF--------------GIVYGISDYGLANN------------------------ 726 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + + ++ G+ + + Sbjct: 727 ------LGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFH---------- 770 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 771 ----------------RRRELPDINARNFNVRQFA---ERTAI------NSPIQGSAADI 805 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 L M N K ++L VHDEI+ E P ++ L M +P Sbjct: 806 LKIAMINLDKALVEGKFKTKMLLQVHDEIILEVPKDELEAIEKLVKETMESAIE--LSVP 863 Query: 663 LKAEGYEAKRY 673 L A+ + + Sbjct: 864 LVADESAGQTW 874 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 100/680 (14%), Positives = 176/680 (25%), Gaps = 143/680 (21%) Query: 23 AYAEQA-VITLCA----YAWDDEPVKLW-------------DRTEQSAMPSDLLQYLRDE 64 AE I A +A V A + +L D Sbjct: 338 WLAEHGTEILGVATVDTWALGAGSVAEIALAAAGGAAAWFDPTALDEADETAWAAWLADP 397 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSE 120 V HN+ +F + G + T++ A L L Sbjct: 398 ARPKVFHNAKSAMRVFAEH-GWTVEGVGM-DTALAAYLVKPGRRSFDLDALTLEYLGREL 455 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +G +A ++ + FGE + A L Sbjct: 456 APAATADG--QLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGL--------L 505 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + G D + ++++ A ++ ++ + Sbjct: 506 RDVELPTSALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQ 564 Query: 241 LRMYLFLITGIDLVDMSEG---TLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTL 295 L+ LF G+ ++ T L+ ++L + + + L Sbjct: 565 LQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGL 623 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + +++DGR+ + A TGR S QN+P Sbjct: 624 IKTIAADGRIHTSFSQTVA-ATGRLSSTDPNLQNVP------------------------ 658 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T A Sbjct: 659 VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAA 718 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + F V E R K M L Y L+++ + FE Sbjct: 719 QVFGVEQSAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNIEAGEARALIDAYFER 773 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + D+ E L G R + + E + Sbjct: 774 FGGVRDYLRRVVDEARETGYTATLFGR---------RRYLPDLNSDNRQRREAAERMALN 824 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 +L R L + Sbjct: 825 APIQGTAADIVKI------------AMLNVGRALDEA----------------------- 849 Query: 595 GKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK 653 ++ ++L VHDEIV E L M Sbjct: 850 ---------GLA---------------SRMLLQVHDEIVLEIAPGERDRTEQLLRHEMAD 885 Query: 654 NPSWAKGLPLKAEGYEAKRY 673 PL + Sbjct: 886 AVHLRA--PLDVSVGHGPDW 903 >gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 824 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 84/463 (18%), Positives = 140/463 (30%), Gaps = 65/463 (14%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--------EQSAMPSDL 57 D+ET P I +++W + + L Sbjct: 407 FDLETAGLDP---------VHDP-IVGYSFSWQKGTAYYLPVRAPAGEPVLNPDTVLAAL 456 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC- 113 + + HN F+ I+ G+++ + V L + Sbjct: 457 KPVFENPAIEKRNHNIKFDLIVLA-ASGVELAGVA-GDSMVAHYLLDPGARAHGLDDLTL 514 Query: 114 LALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K GK I Y C A+ E + D R Sbjct: 515 DELRHTNISIKELIGTGKKQITMAEVPVARVRDYACEDADAALQLAAAFE-PRLDAAGLR 573 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 EL+ L E L + + G R+D+ +++L + +E + DI L G Sbjct: 574 ELYDTL------EVPLIRVLAEMEHVGIRVDVPFLVQLGVQMGEELAGYEGDIHALA-GR 626 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS-----EGTLKSILSHSN-ITQLAKDLILNRLASS 285 + L+ LF + + + T + L + +L S Sbjct: 627 AFNIGSLKELQKILFDELKLPVQKRTGIKNEPSTDQESLERLAALGHELPKKLLAYRKVS 686 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L +GR+ + A TGR S QN+P Sbjct: 687 KLKSTYVDVLPALADKNGRVHTSFNQASAE-TGRLSSSEPNLQNVP-------------- 731 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I +G LV AD + IE R+L G+D AFA Sbjct: 732 ----------TRTEQGAQLRKAFIPRDGWVLVTADYSQIELRLLTHFCGDDTLRAAFAED 781 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 D++ A+ F P +V+K QR + K + + Y A Sbjct: 782 RDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMSATGL 824 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 89/600 (14%), Positives = 167/600 (27%), Gaps = 133/600 (22%) Query: 91 KRWICTSVLARTNGLPSSLKN-------ACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 K + SV A LK+ A + + GKA + + Sbjct: 393 KNFYDISVAAYLINP---LKDSYFVEDIAGDYMGSACSSKSEMIGKAKLN----EVLRFN 445 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 ++++ + + L E L + + G R+D Sbjct: 446 DEKAINYFAMESYVAVHSGENILKKLSELGLDDLYKNI--EMPLIYSLAKMENTGVRVDE 503 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGT 260 + + K + ++ KL+E I+ G + L LF + T Sbjct: 504 ERLKKYANTLLEKIDKLEESII-SKAGESFNINSPKQLGEILFGKLKLSGGKKTKTGYST 562 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + L+ + DGR+ GT + TGR Sbjct: 563 AADVLEKLALEHEIIRDILEYRQLTKLNSTYATGLAGYIREDGRIHGTFNQT-ITATGRI 621 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R + G V AD Sbjct: 622 SSTEPNLQNIP------------------------VRTEMGSKIRDIFVPKPGYVFVDAD 657 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA ++G++ I+++ + DI+ T ++ F+ P+++V+ E R K + + Sbjct: 658 YSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHVPLEEVTPELRRNAKAVNFGVV 717 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y L + + + F+ + + E + G Sbjct: 718 YG-----ISAFGLSEDLSISRKEALDYINNYFKIYGGVKKFLDKQVADAKEKGFVKTMFG 772 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + Sbjct: 773 RIRPI---------PEIKSSNFMTRS---------------------------------- 789 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 GD +N+ + DI+ M + Sbjct: 790 -------------FGDRVAMNSPIQG------------------SAADIMKISMLKVDEA 818 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +IVL +HDE++ E + V L M + S +PL+ + + K + Sbjct: 819 LKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEAVS--LKVPLEVDAHIGKTW 876 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 90/630 (14%), Positives = 173/630 (27%), Gaps = 135/630 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L+Q+L H + + GI++ T++ A Sbjct: 372 KALVQWLESSA-PKYFHAAKAAFHMLAG-RGIELNGLA-HDTALAAYILRPGQRTYELSD 428 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + G A + + +D+++ EL+ Sbjct: 429 VYQRHLQKS---LGAASEQMSLLDNSSLVDQAAAIMELAEKLTT----ELQDIDS-FELY 480 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L E L + + G +D+D++ ++ ++ + + +L + Sbjct: 481 TDL------ELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERSARELAGDDKLN 534 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN--ITQLAKDLILNRLASSGSAI 289 L+ LF + ++ T + D +L Sbjct: 535 LNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFLDHLLAHREYQKMKT 594 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L L + V DGR+ T + TGR S QN+P Sbjct: 595 T-LEGLIKTVQPDGRIHTTFNQTV-TSTGRLSSTEPNLQNIP------------------ 634 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +RS I G +L+ AD + IE RV+A ++ + I+A+ GED+ Sbjct: 635 ------VRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDL 688 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + ++ F+ P+D+V+ E R K M GL Sbjct: 689 HNFVGSRVFDVPVDQVTPELRRRVKAMSYG--------------LVYGLS---------- 724 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + + +++ + GV + D+ E Sbjct: 725 --------------------AFGLSQQLGIPAGEAKSIMESYFERFGGVKKYLDDVVEQA 764 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 RR ++ D + Sbjct: 765 RKDGYTATLF--------------------------GRRRYLPELNSDNRLARENAERA- 797 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M + ++L VHDE+V E V Sbjct: 798 --------ALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQV 849 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M +PL+ + Sbjct: 850 REILEREMDSAIE--LNVPLEVSAGAGTDW 877 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 90/670 (13%), Positives = 179/670 (26%), Gaps = 126/670 (18%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + G+ Y E A + E V L+ + D L D+ + + ++ E Sbjct: 319 KEAGISIYKEN-DAMWVALNTEGEEVYLFSCEGFGFITQDFLYEKIDDLYDNIGYVAMME 377 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIA 133 L I +K S+ A + ++ E Sbjct: 378 VKEHLSHLTIHETTKSIFDVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHP 437 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 G + + + + E R + E Sbjct: 438 MVTDGVLSDAGKKIMGYEAYISREAIQPLSDKLTELEMMDLYR-----EIEIPTMFALHD 492 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG +D + + + + ++L E I K + L + LF ++ Sbjct: 493 MEVRGIHVDSKALKEYGDQLVGRIEELQESIYKEAGEEF-NINSPKQLGVVLFEHMKLEG 551 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ T +L ++L + + L+ + D R+ G Sbjct: 552 AKKTKTGYSTSVEVLEKIEHLYPIISMVLEYRQLTKLKSTYADGLANFIQDDQRIHGKFN 611 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R + Sbjct: 612 QT-ITATGRISSTEPNLQNIP------------------------IRMELGRAIRKVFLP 646 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 +G + AD + IE RVLA ++ ++ I A+ +DI+ T ++ F P+D+V+ QR Sbjct: 647 EDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRR 706 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + GL Sbjct: 707 DAKAVNF--------------GIIYGLS------------------------------AF 722 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + K+ + + A + V + E + R + Sbjct: 723 GLSQDLKISRKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSS 782 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + G+ + + +Q + DI+ Sbjct: 783 NFMQRN-----------------FGERVAM------------------NSPIQGTAADII 807 Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 M + ++L +HDE++ ET + V + M S +PL Sbjct: 808 KIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNAVS--LRVPL 865 Query: 664 KAEGYEAKRY 673 + + + Sbjct: 866 NIDIEQGASW 875 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 90/654 (13%), Positives = 167/654 (25%), Gaps = 152/654 (23%) Query: 38 DDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 +D + D P+D L +L D H++ E G+ + Sbjct: 377 EDGALHAVDIDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKL-NGSGLVLAGVE-Q 434 Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 T++ A + + P + Sbjct: 435 DTALAAYLLRPDLRTGDLADV---------------VQRHVGHEITADAPGAVCAQATAE 479 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D E L + + G +D + L + Sbjct: 480 LVAALTPELAEIGAMEL--------YLDLEVPLATVLAKMEATGISVDAASLRDLSDEYG 531 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSH 267 + + + + + L+ LF + ++ L+ + + Sbjct: 532 VQIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTGYSTAAGELEKLAAS 591 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 L L+ +R + ++ L EAV+ DGR+ T GA TGR S Sbjct: 592 HPHPFLGH-LMAHREYQKMKST--IDGLIEAVADDGRIHTTFNQRGA-ATGRLSSSDPNL 647 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386 QN+P A +R G L+ AD + IE Sbjct: 648 QNIP------------------------VRTEAGRRIRGAFRVGTGYATLITADYSQIEM 683 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RV+A ++ + I+A+ GED++ +K F+ P++ V+ E R K M Sbjct: 684 RVMAHLSQDPGLIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYG-------- 735 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 GL + + ++ + + Sbjct: 736 ------LVYGLS------------------------------AFGLSQQLRISAGEAKQI 759 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + GV + ++ R Sbjct: 760 MDNYFERFGGVKRYLDEVVAHAKETGYTETLY--------------------------GR 793 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R ++ A + +Q + DI+ M Sbjct: 794 RRYLPELNSSNRVAAEAAGRAA---------LNAPIQGTAADIIKRAMLRVDAEFTRRDL 844 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E D V + M +PL + Sbjct: 845 ASRVLLQVHDELVVEVVDGEQDVVTEILREQMDGAAD--LRVPLDVSTGVGSDW 896 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 91/604 (15%), Positives = 159/604 (26%), Gaps = 137/604 (22%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 ++I R T++ A S G + Sbjct: 456 LEIDVSRTFDTTLAAYLLDSARS-------------HFDD--GYIADTYLSVSLPPARGE 500 Query: 146 DCTRANHVQAWQLFGEYCKRDVE---ATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + A + E EL D E L + + G +D Sbjct: 501 AGAPTDAPVASARAAAVARAAREPLARALELRGAKNVFWDIETPLVPVLVAMERTGMLVD 560 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 + L E + + +L I L + L LF + G+ + + Sbjct: 561 PGCLKDLSEGLESQIDELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRG 620 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L LIL + L+TL DGR+ T + Sbjct: 621 YYSTNARVLDELAQDNELVRLILEYREKTKIKSTYLDTLGPLRRQDGRVHTTYNQT-ITA 679 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P V++ A G Sbjct: 680 TGRLSSSNPNLQNIP------------------------TRSELGHTVKTAFSAGEGALF 715 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D + IE R+LA ++G++ I+AF GED + T A+ F P+D+V+ R+ Sbjct: 716 LAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAARVFGVPVDEVTPRLRSRA---- 771 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 +A + + Q + Sbjct: 772 ----------------------------------------KAVNFGIVYGQQAFGLSQTL 791 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + + + + GV A RR R Sbjct: 792 DIPVSEAQEMIDRYFEAYPGVRAFLDRTVAEAAERGYAETMFGRRRPIPELR-------- 843 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + G+ + + + +Q + DI+ M+ Sbjct: 844 ---------MKNATQRSFGERTAM------------------NHPMQGSAADIIKIAMRR 876 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + ++L VHDE+ E P V + M +PL A+ Sbjct: 877 VAERLHGGDLHAKMILQVHDELDFECPIAEVADVSAMVREEMEGVVK--LKVPLIADVST 934 Query: 670 AKRY 673 + Sbjct: 935 GVTW 938 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 93/632 (14%), Positives = 179/632 (28%), Gaps = 146/632 (23%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNA 112 + + L + +A NS +F+ + + ++ +++A + Sbjct: 354 EFKKQLL-KAKAIIAENSK---EIFESDFPYE--NLKFYDVTLIAYLLDPTHVTYNRSYV 407 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 ++ A L Y + Sbjct: 408 GELFKVPSIYIDENASFEQNG------------------NMIADFLLALYTSSYELLVKN 449 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L + E+ L + + G ID + K+++ + ++ +KL +I + Sbjct: 450 DIEKLFK--EVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEKEEKLLLEIYREAGEEF 507 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ T +L + I IL + Sbjct: 508 -NVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLENLAIDYPFVKNILEYRTLAKLIS 566 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L+ + V + + T + TGR S QN+P Sbjct: 567 TYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIP------------------ 608 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +RS + G + +D + +E RVLA ++G++ I+AF N EDI Sbjct: 609 ------VRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDI 662 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T ++ F P ++V+ EQR+ K + + Y L Sbjct: 663 HRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLSKQL----------- 706 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + K + ++ G+ + K +TE Sbjct: 707 ----------------------------GISRKKADEYIKTYLKRYPGIHEFMKKMTEEA 738 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + R D+ S Sbjct: 739 RKTGKVKTLF--------------------------GRYRDLPDINSKNF---QRRSFAE 769 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 R +Q + DI+ M K I+L VHDE+V E Sbjct: 770 RTAM------NTPIQGSAADIMKIAMIQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVE 823 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M S + L A+ + K + Sbjct: 824 EISKLLKETMESVVS--LKVKLVADVHVGKNW 853 >gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] Length = 903 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 84/657 (12%), Positives = 181/657 (27%), Gaps = 125/657 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTL 84 A I A + D + + ++ D ++++ + L Sbjct: 357 ADIIGVAISSDKGN-FYYSAATIQNSTA-FADWISDPNQTK----AVYDAKKTMVTLNRL 410 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSID 141 G+ + + ++ + ++++ F KG+ Sbjct: 411 GLPCEGI-LFDFMLASYVLDPSQTIDDFASVASRYDYTQVEADELV-------FGKGAKY 462 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + P + A+H+ + ++ V + E ++L + + E L + + G R+ Sbjct: 463 NVPDETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVLAKMEMEGVRV 522 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + + +++ +A + ++ I +L G + L + LF G+ V ++ Sbjct: 523 DTERLEEMKSEMAVRLQTIESSIHELA-GTTFNINSPKQLGVILFETLGLPPVKKTKTGY 581 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L + D IL + L + T ++TG Sbjct: 582 STAADVLESLSGKHPIIDEILLYRQLGKLQSTYVEGLLKVTDKKTSKVHTRFNQTLTQTG 641 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + G K+ Sbjct: 642 RLSSVDPNLQNIP------------------------IRLEEGRKIRQVFVPSHPGWKMF 677 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E RVLA I+ ++ + AF N DI+ T F+ +V R K + Sbjct: 678 SADYSQVELRVLAHISQDENLVYAFRNDYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNF 737 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y L + + + F + + + + E + Sbjct: 738 GIVYG-----ISDYGLSQNLGITRKAAKDFIDRYFASYPDVKVYMEEIVRSAKEKGYVET 792 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556 ++ R + ++ + SA + L+M Sbjct: 793 ILHR---------RRYIPEITSRNFNVRSFAERTAMNTPIQGSAADIIKQAMLLMDERLE 843 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + ++ + +I Sbjct: 844 SEQMEAKLLLQVHDELIFEAPE----------------------------AEIAKLA--- 872 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 EI PD +M A +PLK + + Sbjct: 873 --------------EI---VPD-----------VMENAV--ALSVPLKVDSAHGDSW 899 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 98/622 (15%), Positives = 175/622 (28%), Gaps = 131/622 (21%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL 116 +L DET V H+S + F G I T + A L + L Sbjct: 380 WLADETRPKVLHDSKPAVLAFAAH-GWSIEGIT-RDTQIAAYLARPDQRSYDLVDLALRY 437 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E + G+ + + ++A D E +R+ + Sbjct: 438 LHRELRV-DTPDTGQLTFEGLGND----GEAEQNLMLRARATLDLADAIDAELSRDGEQS 492 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 ++ E L + ++ G D + +L+ A E K + + + Sbjct: 493 SRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYEAVGREF-NLG 551 Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILK 291 L+ LF+ G+ T L + L +L + Sbjct: 552 SPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTT- 610 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++VS DGR+ T A TGR S QN+P Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP-------------------- 649 Query: 352 TIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + G L+ AD + IE R++A ++ +D I AF +G D + Sbjct: 650 ----IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHA 705 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + F P+++V+ +QR K M GL Sbjct: 706 ATASSVFQVPVEEVTTDQRRKIKAMNY--------------GLAYGLS------------ 739 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + + + + + A GV +++ Sbjct: 740 ------------------AFGLSQQLGVTAEEARGLMEIYFAGFGGVRDYLQEVVARARH 781 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + RR D+ D ++ Sbjct: 782 DGYTETVL--------------------------GRRRYLPDLVSDNRQRREMAERM--- 812 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M ++L VHDE+V E + Sbjct: 813 ------ALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDELVFEVAPGERERL 866 Query: 645 GTLCSL-MTKNPSWAKGLPLKA 665 L M + +PL+ Sbjct: 867 EELVRREMGEAYP--LSVPLEV 886 >gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 416 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 73/511 (14%), Positives = 151/511 (29%), Gaps = 108/511 (21%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++L + ER L ++ + G ++D + + +Q + + +L+++I Sbjct: 3 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG 62 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + L + LF + ++ ++ T +L D IL + Sbjct: 63 EEF-NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 121 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + VS DG+ + TGR S QN+P Sbjct: 122 IQSTYIEGLLKVVSKKDGKAHTRYTQT-LTSTGRLSSVDPNLQNIP-------------- 166 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G ++ +D + IE RVLA I+ + +AF Sbjct: 167 ----------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKE 216 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ +T + FN D+V+ R K + + Y + + + Sbjct: 217 GMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKQ 271 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + + + + + E + + R + + Sbjct: 272 AKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNR---------RRYLPDIKSRNFN 322 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 L + +N+ Sbjct: 323 LRSFAER-----------------------------------------------TAMNSP 335 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 K+ +Q ++L E ++L VHDE++ E P Sbjct: 336 IQG---SAADIIKVAMINMQ----EMLKE-----KNLQAKMLLQVHDELIFEAPTKEIPL 383 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +M +PLK E + + Sbjct: 384 LEDMVPKVMDSAVK--LDVPLKVESKHGQTW 412 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 103/630 (16%), Positives = 181/630 (28%), Gaps = 137/630 (21%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS---SL 109 + L +L D AH+ + + +D+P T++ A L Sbjct: 422 VAALGAWLADPNQPKAAHDVKGPMLALTE---LDLPLAGVTSDTALAAYLALPGQRSFDL 478 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + + G + S D A+ V+A D + Sbjct: 479 ADLVARYLHRDLSADPVPGGQQLTLDG-----SGEADQAHADAVRARACLELADALDADL 533 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R L+ D E L + + G +D + + +LQ+ E + ++ Sbjct: 534 ERRSAATLLR--DIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVG 591 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLA 283 + L+ LF G+ T L+ L L+ +R Sbjct: 592 RPF-NLGSPKQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDV 650 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + +++L + GR+ T A TGR S QN+P Sbjct: 651 ARLK--TVVDSLIPMIDDIGRIHTTFNQTIA-ATGRLSSADPNLQNIP------------ 695 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G L+ AD + IE R++A ++G++ I+AF Sbjct: 696 ------------IRTAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAF 743 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +GED++ A+AF P+ +V E R K M + GL Sbjct: 744 GSGEDLHTFVAAEAFGLPVSEVDPELRRRIKAM--------------SYGLAYGLS---- 785 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + A+ A+ GV + Sbjct: 786 --------------------------AFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLR 819 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + E + RR D+ D S Sbjct: 820 GVVERARKDGYTETIL--------------------------GRRRYLPDLTSDNSQRRQ 853 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSET 636 ++ +Q + DI+ M + ++L VHDE+V E Sbjct: 854 MAERM---------ALNAPIQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEI 904 Query: 637 PDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665 + +V L MT + +PL Sbjct: 905 APGEHDAVERLVRAEMTSA--YTMSVPLDV 932 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 192/664 (28%), Gaps = 156/664 (23%) Query: 39 DEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94 + D T L +L D V H + D+ + W Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418 Query: 95 ---CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A +L + L K + D + Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY-----------LKRELRADNPEQQQLSLLDDS 467 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRID 202 QA Q V+ L + L + + E + + + G +D Sbjct: 468 DGVDDQAVQTLLLRASAVVDLADALDEELSRIDSSALLGNMELPVQRVLAELETAGIAVD 527 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259 L+++ LQ A + + + G + L++ LF + ++ Sbjct: 528 LEMLSGLQSEFADQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYT 586 Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L +L ++ + ++ L AV+SDGR+ T A T Sbjct: 587 TDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNAVASDGRIHTTFNQTIA-AT 644 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376 GR S QN+P A +R + +G +L Sbjct: 645 GRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFVVGDGYGEL 680 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++ ++ I+AF GED++ ++AF+ PID+V+ E R K M Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 GL + + Sbjct: 741 YG--------------LAYGLS------------------------------AYGLSQQL 756 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 K+ + + + A+ GV +D+ + Sbjct: 757 KISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVF------------------ 798 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR ++ + A + +Q + DI+ M N Sbjct: 799 --------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAADIIKVAMIN 841 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + +L VHDE++ E D ++ L M +A +PL+ Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899 Query: 670 AKRY 673 + + Sbjct: 900 GRSW 903 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 192/664 (28%), Gaps = 156/664 (23%) Query: 39 DEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94 + D T L +L D V H + D+ + W Sbjct: 367 GGEGRYIDTTGLDPDDEKALASWLADPHVPKALHEAK-----LAIH---DLQGRGWTLAG 418 Query: 95 ---CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A +L + L K + D + Sbjct: 419 VTSDTALAAYLVRPGQRSFALDDLSLRY-----------LKRELRADNPEQQQLSLLDDS 467 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRID 202 QA Q V+ L + L + + E + + + G +D Sbjct: 468 DGVDDQAVQTLLLRASAVVDLADALDEELARIDSSALLGNMELPVQRVLAELETAGIAVD 527 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259 L+++ LQ A + + + G + L++ LF + ++ Sbjct: 528 LEMLSGLQSEFADQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYT 586 Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L +L ++ + ++ L AV+SDGR+ T A T Sbjct: 587 TDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNAVASDGRIHTTFNQTIA-AT 644 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376 GR S QN+P A +R + +G +L Sbjct: 645 GRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFVVGDGYGEL 680 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++ ++ I+AF GED++ ++AF+ PID+V+ E R K M Sbjct: 681 MTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMS 740 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 GL + + Sbjct: 741 YG--------------LAYGLS------------------------------AYGLSQQL 756 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 K+ + + + A+ GV +D+ + Sbjct: 757 KISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVF------------------ 798 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR ++ + A + +Q + DI+ M N Sbjct: 799 --------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAADIIKVAMIN 841 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + +L VHDE++ E D ++ L M +A +PL+ Sbjct: 842 VDQAIKDAGLKSRTLLQVHDELLFEVADGERDTLDALVREHMGSA--YALDVPLEVSVGF 899 Query: 670 AKRY 673 + + Sbjct: 900 GRSW 903 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 92/649 (14%), Positives = 178/649 (27%), Gaps = 148/649 (22%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-WICT 96 D E + SA LL L E + V K+ + + + Sbjct: 361 DAEKAGFVP--KDSAAFPALLSLLESEKQVAVF--------GLKRYDQAGVRGQNDFFDI 410 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + A S E K + D +A Sbjct: 411 ELAAYLLEPERS------KYALPELSQKYL----------QEMAPESFADERSRAVWEAK 454 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + Y + E L+ E L + + G ++ + + E +A Sbjct: 455 TISRLYPLLGAKLEEEELTHLMKTV--ELPLVEVLAAMEQNGVYVNRAHLAEKTEEVADR 512 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 + +++ I ++ + L LF + + ++ T +L + Sbjct: 513 LQTIEQSIYEMAGHTF-NLNSPKQLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHP 571 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + IL S L+ ++ + +D GR+ + + TGR S QN+P Sbjct: 572 IVEQILAYRLWSKLKSTYLDGITGLIRTDTGRVHTSFNQTV-TATGRLSSSDPNLQNIP- 629 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAW 391 +R+ G L+ AD + IE R+LA Sbjct: 630 -----------------------VRTEEGRMIRALFEPGEGYDYLLSADYSQIELRLLAH 666 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G++ I F G+DI+ T A+ F P+++V+ E R K + Sbjct: 667 MSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNF-------------- 712 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ ++N+ + + Sbjct: 713 GIVYGISDFGLARNLH------------------------------ISRKEAGDYISRYF 742 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 ++ GV + RR Sbjct: 743 ERYPGVRAFMDKVVAEAHETGYVTTMF--------------------------GRRRELP 776 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIV 625 +K ++ +Q + D++ M + G I+ Sbjct: 777 AIKSRNFNQRMLAERM---------AMNTPIQGTAADVIKLAMIAAYHRLKEAGVKSRIL 827 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+V E ++ V + M A +PL + + + + Sbjct: 828 LQVHDELVLEVVESELDVVQAILRESMEHVV--ALSVPLIIDIHWGRNW 874 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 176/659 (26%), Gaps = 136/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A D T+ SA L +L D T V H + G + Sbjct: 356 LAIADGPGSAVALDLTDLSAADDTALSDWLSDPTRAKVVHGGKSVWHELA-SRGYSLEGV 414 Query: 92 RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T + A L + E G Sbjct: 415 -VFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDTSSDQGALDLSVGEDSEGGRLAV 473 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 RA + D A L++ E L + + G +D+D + + Sbjct: 474 RAAALTDLAEVLRGELGDRSAEPL-------LTELELPLSAVLVHMERHGIAMDVDYLRE 526 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSIL 265 L++ + ++ + + L+ LF + T + L Sbjct: 527 LEQHFGELVTGAAASAYEVIGREV-NLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAAAL 585 Query: 266 SHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + K L+ +R ++ + L ++V+ DGR+ T Q A TGR S Sbjct: 586 ADLFVKTEHPFLKFLLDHRDSTRLRQT--VEGLLKSVADDGRIHTTFQQTIA-ATGRLSS 642 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P A +R + +G L+ AD Sbjct: 643 TEPNLQNIP------------------------IRTEAGRRIRRAFVVGDGYETLLTADY 678 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++G++ I+AF GED++ ++ F V+ R+ K M L Y Sbjct: 679 SQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGLAY 738 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + L++ Sbjct: 739 G-----LSSFGLSNQLNIDV---------------------------------------K 754 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + GV + + + Sbjct: 755 EASKLMEDYFTRFGGVRTYLAGVVDEARANGYTATIM----------------------- 791 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 RR D+ D ++ +Q + DI+ M K Sbjct: 792 ---GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADIIKVAMLGVEKEI 839 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + TL M +PL + Sbjct: 840 AVRGLRSRLLLQVHDELILEVGHGELEELTTLVREQMGSAADLL--VPLDVSVGTGSSW 896 >gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87] gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87] Length = 887 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 89/651 (13%), Positives = 185/651 (28%), Gaps = 118/651 (18%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL--FERILFKKTLGID 87 I + DD V + + + DL+Q+L D+ + +++ + + L ID Sbjct: 344 ILKFGFYADDSHV-VINAEDIKQY-QDLVQWLEDKNTIKTVYDAKKTY---VAAHRLNID 398 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + ++ + + S+ + ++ K ++ + KG P + Sbjct: 399 IQNVQF-DVMLSSYIIDPSRSIDDVKSVVSLYGQNY----VKDNVSVYGKGKKHQVPEEE 453 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 HV + K ++EA E + ++ L D E L + + + G D++ + Sbjct: 454 VLNKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLK 513 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L ++I + + L + LF + ++ ++ T + Sbjct: 514 QMENEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDV 572 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + IL S + L + +S D R+ A +TGR S Sbjct: 573 LEQLQGEHPIIEHILEYRQLSKLQSTYVEGLQKVISKDQRIHTRFNQTLA-QTGRLSSVD 631 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P +R ++ AD + Sbjct: 632 PNLQNIP------------------------IRLEEGRKIRKAFKPTDKDSVILSADYSQ 667 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA I ++ +AF NG DI+ T K FN ++V R K + + Y Sbjct: 668 IELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGIVYG- 726 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + + + + + + L+ Sbjct: 727 ----ISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAEGYVETLLHR-- 780 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 R + +L + Sbjct: 781 -------RRYIPDITSRNFNLRSFAERTAMNTPIQGSAADII------------------ 815 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 +L N + + Sbjct: 816 ---KLAMVKFYEKVKDTNYHATL---------------------------LLQVHDE--- 842 Query: 624 IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E P + + +M + +PLK + + Sbjct: 843 --------LIFELPKSEVEDFSKFVEEIMEQALD--LDVPLKVDSSYGPTW 883 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 96/658 (14%), Positives = 186/658 (28%), Gaps = 146/658 (22%) Query: 34 AYAWDDEP-----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 A A+ D+ V+L D + + L Q+L + H + + GI++ Sbjct: 345 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLAG-RGIEL 400 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A R + ++ + + Sbjct: 401 AGIA-HDTALAAYLLRPGQRTYALADVY----------------QRHLQKTLGAATEQLS 443 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + + T EL + +D E L + + G +D+D++ Sbjct: 444 LLDDSSLVDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDIL 503 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++ ++ + + +L + L+ LF + ++ T Sbjct: 504 ETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAK 563 Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 + D +L L L + V DGR+ T AS TGR S Sbjct: 564 EIEQLAAKNPHPFLDHLLAHREYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLS 621 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380 QN+P A +RS I +G +L+ AD Sbjct: 622 STEPNLQNIP------------------------VRTEAGRQIRSAFIVGDGFDELMTAD 657 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RV+A ++ + I+A+ GED++ ++ F+ P+D+V+ E R K M Sbjct: 658 YSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYG-- 715 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 GL + + + Sbjct: 716 ------------LVYGLS------------------------------AFGLSQQLGIPA 733 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + +++ + GV + ++ Sbjct: 734 GEAKSIMESYFERFGGVKKYLDEVVVQARKDGYTATLF---------------------- 771 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RR ++ D + +Q + DI+ M + Sbjct: 772 ----GRRRYLPELNSDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDRA 818 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V + M +PL+ K + Sbjct: 819 LQGMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 874 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 85/606 (14%), Positives = 155/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+D+P +LA ++ + Sbjct: 354 DLAVLALREGLDLPPS--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 394 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A E K L + E+ L + + Sbjct: 395 ----------GEWTEDAAQRALLAERLQQNLLERLEGE-EKLLWLYREVEKPLSRVLAHM 443 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL- 253 G R+D+ + L + E K+L+E++ +L + L LF + Sbjct: 444 EATGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGHPF-NLNSRDQLERVLFDELKLPAL 502 Query: 254 VDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL S ++ L V GRL Sbjct: 503 GKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGLVHPRTGRLHTR 562 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 563 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKAF 597 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P++ V Sbjct: 598 VAEEGFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRM 657 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + + Sbjct: 658 RRAAKTVNFGVLYGMSAHRLSQE-----LAIPYEEAVAFIERYFQSFPKVRAWIEKTLEG 712 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 713 GRQRGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 759 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + Sbjct: 760 -----------------MKLAMVKLFPRLKETG--------------------------- 775 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + ++ E P +V L +M A +PL+ E Sbjct: 776 --ARMLLQVHDE-----------LLLEAPKDRAEAVAALAKEVMEGVYPLA--VPLEVEV 820 Query: 668 YEAKRY 673 + + Sbjct: 821 GIGEDW 826 >gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel] gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel] Length = 860 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 84/662 (12%), Positives = 182/662 (27%), Gaps = 147/662 (22%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF 80 ++ I + ++ + + ++ + + ++ V +++ Sbjct: 331 LYIDITDNTINSMSLSYKEGTILYINKEHIIHALDLIKPLFSLDHILKV----MYDVKTL 386 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 K + D + +++ + + L + L + + Sbjct: 387 FKIIQEDTNITAFDDILIMSYSLDV--GLHD-----------------HTLKNIIIRNTD 427 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + ++ R+ E+ L + + G Sbjct: 428 KHDITNENITASTLLSLHTALRRNLFTNQLCTIYYRI------EKPLINVLHNMEKIGIM 481 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---- 256 ID ++ KL + + L+E I KL+ + + L LF GI Sbjct: 482 IDGSILDKLSSTFSDKISVLEEKIYKLSGEEF-NIASSRQLSTILFDKMGIKKGKKLSSG 540 Query: 257 SEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 + T +L D IL + + L++ + ++ T ++ Sbjct: 541 TYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLAKQIDNNTSRVHTFYSMTST 600 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + +R+ IA +G K Sbjct: 601 VTGRLSSSNPNLQNIP------------------------IRSEEGNAIRNAFIAKSGYK 636 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A IA AF+ +DI++ T + FNT Sbjct: 637 LISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT---------------- 680 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 ++ + + A + Sbjct: 681 ------------------------------QNIDKKLRRKAKSINFGIIYGISPFGLAKQ 710 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + + + +D+ Sbjct: 711 LGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVF----------------- 753 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R+ D+ + L + + +Q S DI+ M Sbjct: 754 ---------GRKCFIKDINSNNHALRNFSERA---------AVNAPLQGTSADIIKMSMI 795 Query: 616 NATKN---GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 + GY ++L VHDE++ E P+ +V + +M +PLK + Sbjct: 796 HLFDRLKTGY-MILQVHDELLFEVPEDHVDNTVKLIKEVMEGIVK--LSVPLKVDITIGD 852 Query: 672 RY 673 + Sbjct: 853 NW 854 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 97/636 (15%), Positives = 170/636 (26%), Gaps = 144/636 (22%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 L ++L + H+S + ++ T + A SL N Sbjct: 368 DALREWLA-GDHPKLVHDSKSAMHVLWNY-DFEL-VGVIHDTFLAAYLLRPSQRSYSLDN 424 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + D+ + E V A Sbjct: 425 VVQRHLGQTLSQAD----GQMTLLDGPAEDASHVAAVIDLAERLAVELDEAGLYSVYADL 480 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+ L + + G +D+D + +L++ + L D Sbjct: 481 EV------------PLAPVLGRMERAGIAVDVDALEELRKQAQAATDDAESAARNLVDKP 528 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SILSHSNITQLAKDLILNRLASS 285 + L+ LF G+ ++ T L+ N L+ R + Sbjct: 529 ELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYLLKFRESQK 588 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + L +AV+ DGR+ T A TGR S QN+P Sbjct: 589 MKST--VEGLIKAVADDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP-------------- 631 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G +L+ AD + IE RV+A ++ + I+A+ Sbjct: 632 ----------VRTEFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQ 681 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GED++ +K F ID+V+ E R K M GL Sbjct: 682 GEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYG--------------LAYGLS------ 721 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A + + + + + + + GV + Sbjct: 722 ------------------------AFGLAQQLDIPQREAKKLMEDYFERFGGVRDYLHKV 757 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E D RR ++ D A Sbjct: 758 VEQARK--------------------------DGFTATMFDRRRYLPELNADN---RIAR 788 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 R + +Q + DI+ M ++L VHDE+V E D Sbjct: 789 DNAERAA------LNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVAD 842 Query: 639 TPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ L M +PL + Sbjct: 843 GEEAAIKELLHREMDSAAELL--VPLDVSIGAGVNW 876 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 114/666 (17%), Positives = 189/666 (28%), Gaps = 138/666 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTL 84 +T A A D +A P D L +L D + H + + + Sbjct: 363 GDVTALAIAASDGECAYI--AASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGR 419 Query: 85 GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 G + T++ A +L + L L G+ ++ D Sbjct: 420 GWTL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRY-LKRELRAETSGQEQLSLL----DD 473 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + D A + E + LSD E L + I G + Sbjct: 474 TEQLDAEAAETAMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIVV 533 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + LQ A + ++ + L++ LF + ++ Sbjct: 534 DSAHLHDLQSRFASQVADAANSAYEVI-DKQINLGSPKQLQVVLFEELDMPKTKKTKTGY 592 Query: 259 GTLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T L + L+ +R A+ ++ L +AV+ DGR+ T A Sbjct: 593 STDAEALQGLFDKTGHPFLEHLLAHRDATRMKVT--VDGLLKAVAEDGRIHTTFNQTVA- 649 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK- 374 TGR S QN+P A +R + G Sbjct: 650 ATGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGFD 685 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R++A ++G++ I+AF GED++ ++AF PI++V+ E R K Sbjct: 686 VLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVKA 745 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 M GL A Sbjct: 746 MSYG--------------LAYGLS------------------------------AYGLAS 761 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + K+ + A+ A+ GV + E Sbjct: 762 QLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLY---------------- 805 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+ D R +Q + DI+ M Sbjct: 806 ----------GRRRYLPDLNSDN---RQRREVAERAA------LNAPIQGTAADIIKVAM 846 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEG 667 N K ++L VHDE+V E + V L M +PL Sbjct: 847 INVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LSVPLDVSV 904 Query: 668 YEAKRY 673 + + Sbjct: 905 GTGRSW 910 >gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 113/400 (28%), Positives = 167/400 (41%), Gaps = 65/400 (16%) Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A +D R RG QFYGA+RTGRW+G + Q QNLP+ + + + + Sbjct: 6 KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65 Query: 351 ET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 ++ D S +R+ IA G K VAD + IEARV+A +AGE W+ F NG Sbjct: 66 DSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGG 125 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ F+ ++K + R GK+ ELALGY G K M Sbjct: 126 DIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG------------ 173 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ L + + AWR + ++ LW D Sbjct: 174 ----------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWWDF 205 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 ++ + + I LPS R+L Y + + Sbjct: 206 DTAIKNAIK------MHCSTASHGIKFTWRSGMLLITLPSGRKLTYVKPRIGENKFGGES 259 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 AT + R YG K EN+VQAISRD+L MK + I VHDE++ E Sbjct: 260 VTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMKTL--SHCFICGHVHDELIIE 317 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ LC M + P W + L+A+GY + Y+K Sbjct: 318 C--SEKVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 352 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 392 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 393 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 441 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 442 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 500 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 501 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 560 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 561 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 595 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 596 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 655 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 656 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 710 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 711 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 757 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 758 -----------------MKLAMVKLFPRLEEMG--------------------------- 773 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 774 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 818 Query: 668 YEAKRY 673 + + Sbjct: 819 GIGEDW 824 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 356 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 396 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 397 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 445 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 446 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 504 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 505 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 564 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 565 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 599 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 600 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 659 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 660 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 714 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 715 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 761 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 762 -----------------MKLAMVKLFPRLEEMG--------------------------- 777 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 778 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 822 Query: 668 YEAKRY 673 + + Sbjct: 823 GIGEDW 828 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 564 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 598 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821 Query: 668 YEAKRY 673 + + Sbjct: 822 GIGEDW 827 >gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 889 Score = 264 bits (674), Expect = 5e-68, Method: Composition-based stats. Identities = 96/667 (14%), Positives = 192/667 (28%), Gaps = 148/667 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + + L +L +T + V ++ + Sbjct: 345 DLVGFAWSCGDK----LYATDKLDLLQEPILKNFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSID 141 L +++ + + + + + + + +E + KG Sbjct: 395 LDLNLQAPAF-DSRLAKYLLSTVENNEISTIASLYG--QTYMVDDE-----TFYGKGVKK 446 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + P H+ A ++ V +L L D E+ L + + G + Sbjct: 447 AIPEREKFLEHL-ARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIK 505 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVD 255 + + +L++Q ++L ++I +L D + L + LF G+ Sbjct: 506 VKKETLLEMQAENEVVIEQLTQEIYELADEEF-NINSPKQLGVLLFEKLGLPLEYTKKTK 564 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ + + +L + + DG++ + Sbjct: 565 TGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVSLQDWILDDGKIHTRYVQ-DLT 623 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374 +TGR S QN+P +R + Sbjct: 624 QTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDS 659 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGK 433 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K Sbjct: 660 VLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAK 719 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + + Y L Sbjct: 720 AVNFGVVY-----GISDFGLANNL------------------------------------ 738 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + + G+ +++ Sbjct: 739 ---GISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK-------------- 781 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ + R + +Q + DIL Sbjct: 782 ------------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADILKIA 820 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666 M K ++L VHDEIV E P + +V L M + +PL A+ Sbjct: 821 MIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEAIQ--LSVPLIAD 878 Query: 667 GYEAKRY 673 E + Sbjct: 879 ENEGATW 885 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 264 bits (674), Expect = 5e-68, Method: Composition-based stats. Identities = 108/672 (16%), Positives = 189/672 (28%), Gaps = 144/672 (21%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D L +L D H + Sbjct: 353 AYDADATALAIVSADGEGRYIDTATLDPEDEAALASWLADPGPPKALHEAK-----LAMH 407 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL + L E + E Sbjct: 408 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLRRELRAENPE---QQQL 461 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L+ E + + + Sbjct: 462 SLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLS--GMELPVQRVLAGM 519 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 + G +DL+L+ +LQ A + + G + L+ LF + Sbjct: 520 ENAGIAVDLELLTELQSDFAHLIRDA-AEAAYAVIGKQINLGSPKQLQAVLFDELEMPKT 578 Query: 255 DMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ T L +L ++ + ++ L +V+SDGR+ T Sbjct: 579 KRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVASDGRIHTTF 637 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P A +R + Sbjct: 638 NQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAFV 672 Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +G +L+ AD + IE R++A ++ ++ I+AF GED++ ++AF PI++V+ E Sbjct: 673 VGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAEL 732 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K M L GL S +K Sbjct: 733 RRRVKAMSYGL--------------AYGLSAYGLSAQLK--------------------- 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + + A+ GV + E Sbjct: 758 ---------ISTEEAKDQMEQYFARFGGVRDYLMAVVEQARKDGYTSTVF---------- 798 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RR ++ + A + +Q + D Sbjct: 799 ----------------GRRRYLPELDSSNRQVREAAERA---------ALNAPIQGSAAD 833 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 I+ M K I+L VHDE++ E + L M + Sbjct: 834 IIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALARDKMGGAYP--LDV 891 Query: 662 PLKAEGYEAKRY 673 PL+ + + Sbjct: 892 PLEVSVGYGRSW 903 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 264 bits (674), Expect = 5e-68, Method: Composition-based stats. Identities = 101/664 (15%), Positives = 187/664 (28%), Gaps = 156/664 (23%) Query: 39 DEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--- 94 D + D T L +L D H + D+ + W Sbjct: 368 DGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAK-----LAMH---DLQGRGWTLAG 419 Query: 95 ---CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A +L + L K + D + Sbjct: 420 VTSDTALAAYLVRPGQRSFALDDLSLRY-----------LKRELRADNPEQQQLSLLDDS 468 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRID 202 A QA Q V+ L + L + E + + + G +D Sbjct: 469 DAVDDQAVQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVD 528 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259 L ++ +LQ A + + + G + L++ LF + ++ Sbjct: 529 LAMLSELQSEFAGQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELEMPKTKRTKTGYT 587 Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L +L ++ + ++ L +V++DGR+ T A T Sbjct: 588 TDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAADGRIHTTFNQTIA-AT 645 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-L 376 GR S QN+P A +R + G L Sbjct: 646 GRLSSTEPNLQNIP------------------------IRTEAGRRIRDGFVVGEGYADL 681 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++ + I+AF GED++ ++AF+ P+D+V+ E R K M Sbjct: 682 MTADYSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMS 741 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 GL + + Sbjct: 742 YG--------------LAYGLS------------------------------AYGLSQQL 757 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 K+ + + + A+ GV +D+ + Sbjct: 758 KISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVF------------------ 799 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR ++ R +Q + DI+ M N Sbjct: 800 --------GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIN 842 Query: 617 ATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + ++L VHDE++ E D ++ L M + +PL+ Sbjct: 843 VDQAIKEAGLSSRMLLQVHDELLFEVADGERDALDALVREHMGSA--YRLDVPLEVSVGY 900 Query: 670 AKRY 673 + + Sbjct: 901 GRSW 904 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 264 bits (674), Expect = 5e-68, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 564 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 598 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821 Query: 668 YEAKRY 673 + + Sbjct: 822 GIGEDW 827 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 95/720 (13%), Positives = 190/720 (26%), Gaps = 172/720 (23%) Query: 2 SKLFID--IETRSPQPLPKVGVWAYA-------------------EQAVITLCAYAWDDE 40 ++ +D E + + A A A + +W++ Sbjct: 293 KEISLDNHTEDFVLLDTREALLEAVASIRAVGRLALFCHSTSQHPMLAQLKGLGLSWEEN 352 Query: 41 PVKLWDRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + D+ + L D + ++ + +++ + G + Sbjct: 353 QGAYLPFQHRLTE-KDIWEILEPLWSDPGIAKISPDLKT-AMIWGERYGHPL-VGSVSDI 409 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + + + L A Sbjct: 410 LLASYLLNPVR-----------FDQTIENVALLDLGLNLLSPRE---LAGRPLAASDLPL 455 Query: 157 QLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLV 206 +L Y +A L+ RL D E + + + RG R+DLD + Sbjct: 456 ELAIGYAAGRGQAAFRLWPRLHQQLQQEKLLRLYEDLELPVLRVLAAMETRGIRVDLDFL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTL 261 + + +E L+E+I ++ + L LF + ++ T Sbjct: 516 QRFGREVEKELASLEEEIHEMAGEPFL-IQSPPQLAAILFDRLQLPTQKKTKGRTAYSTD 574 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L+ ++ ++ L + V GR+ T A TGR Sbjct: 575 NEVLTALADYHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGRIHTTFVQSVA-ATGRL 633 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P G +R + S+G + D Sbjct: 634 SSRDPNLQNIP------------------------VRGELGAQLRQAFLPSSGYIFISGD 669 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA + + ++AF GED++ T A+ F + VS+E R KV+ Sbjct: 670 YSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVIN---- 725 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ A + + Sbjct: 726 ----------FGIIYGMS------------------------------AFGLAKQLNVSQ 745 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + A+H GV + + + + Sbjct: 746 RLAQDFINRYFARHTGVKRYFDQALDTARQKGWVTTLL---------------------- 783 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RR + L + +Q + D++ + M Sbjct: 784 ----GRRRPIPHLHSSNRNLRQEAER---------SALNTPLQGSAADLIKKAMLAVEAA 830 Query: 621 GY------DIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L +HDE++ E P +V L M PL + + + Sbjct: 831 LVHEGLSGRLLLQIHDELLLEAPYQEQAATVDCLRRAMEGVAQLRT--PLVVDIQTGENW 888 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 86/606 (14%), Positives = 150/606 (24%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHLTKMEEGKALIAR 134 + + G +IP +LA ++ + Sbjct: 353 DLSVLALREGREIPPG--DDPMLLAYLLDPGNTNPEGVARRYG----------------- 393 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + WQ + L + ER L + + Sbjct: 394 ----GEWKEDAAARALLSERLWQALYPRVAEEERL-------LWLYREVERPLAQVLAHM 442 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL- 253 G R+D+ + L + +A E ++L+ ++ +L + L LF G+ Sbjct: 443 EATGVRLDVPYLEALSQEVAFELERLEAEVHRLAGHPF-NLNSRDQLERVLFDELGLPPI 501 Query: 254 ---VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L IL ++ L V GRL Sbjct: 502 GKTEKTGKRSTSAAVLELLREAHPIVGRILEYRELMKLKSTYIDPLPRLVHPKTGRLHTR 561 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 562 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKAF 596 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G+DI+ T A F P + V Sbjct: 597 IAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGVDGAM 656 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 657 RRAAKTVNFGVLYGMSAHRLSQE-----LSIPYEEAAAFIERYFQSFPKVRAWIAKTLEE 711 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L G R + K + E + Sbjct: 712 GRKKGYVETLFGR---------RRYVPDLNARVKSVREAAERMAFNMPVQGTAADL---- 758 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + L Sbjct: 759 -----------------MKLAMVKLFPRLRPLGVRI------------------------ 777 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +VL E P L M +PL+ E Sbjct: 778 -----LLQVHDE---LVL--------EAPKARAEEAAQLAKETMEGVYP--LSVPLEVEV 819 Query: 668 YEAKRY 673 + + Sbjct: 820 GMGEDW 825 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 107/673 (15%), Positives = 190/673 (28%), Gaps = 146/673 (21%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKT 83 A A T A D + D + L +L D H + Sbjct: 351 AYDADATALAIVSADGEGRYIDTSALQPDDEAALASWLADPGPPKALHEAK-----LAMH 405 Query: 84 LGIDIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 D+ + W T++ A SL++ L E + E Sbjct: 406 ---DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAE---QQQL 459 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + ++A + D E R L L E + + + Sbjct: 460 SLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL--LGGMELPVQRVLAGM 517 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +DL+L+ +LQ A + + + G + L+ LF + Sbjct: 518 EHTGIAVDLELLGELQSDFAHQIRDA-AEAAYAVIGKQINLGSPKQLQTVLFDELEMPKT 576 Query: 255 DMSEG---TLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ T L + L+ +R + ++ L +V+SDGR+ T Sbjct: 577 KRTKTGYTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVT--VDGLLASVASDGRIHTT 634 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A TGR S QN+P A +R Sbjct: 635 FNQTIA-ATGRLSSTEPNLQNIP------------------------IRTEAGRRIRDAF 669 Query: 369 IASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + +G +L+ AD + IE R++A ++ ++ I+AF GED++ ++AF PI +V+ E Sbjct: 670 VVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIGEVTAE 729 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K M GL Sbjct: 730 LRRRVKAMSYG--------------LAYGLS----------------------------- 746 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + K+ + A+ A+ GV ++ + + Sbjct: 747 -AYGLSQQLKISTEEAKEQMDAYFARFGGVRDYLMNIVDQARKDGYTSTVL--------- 796 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR ++ R +Q + Sbjct: 797 -----------------GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAA 830 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKG 660 DI+ M K ++L VHDE++ E + L M Sbjct: 831 DIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEALAREKMGGAYP--LD 888 Query: 661 LPLKAEGYEAKRY 673 +PL+ + + Sbjct: 889 VPLEVSVGYGRSW 901 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 99/625 (15%), Positives = 173/625 (27%), Gaps = 131/625 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC 113 L +L D V H+S R+ F G + T + A L + Sbjct: 380 LAAWLADPARPKVLHDSKHARLAFA-ARGWSLAGVA-RDTELAAYLARPDQRSYDLTDLA 437 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L E + G + + +QA D E +R+ Sbjct: 438 LRYLHRELRV-DAPETGQLTFDGLGDD----GEAEQNLMLQARATLDLADAIDAELSRDG 492 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + ++ E L + + G DLD + +L+ A E K + Sbjct: 493 EQSARLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYAAVGREF- 551 Query: 234 SSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHS--NITQLAKDLILNRLASSGSA 288 + L+ LF G+ T L + +L + Sbjct: 552 NLGSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEHLLRHRDVAKLK 611 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L ++VS DGR+ T + A TGR S QN+P Sbjct: 612 TT-VDGLLKSVSEDGRIHTTFKQTVA-ATGRLSSTDPNLQNIP----------------- 652 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + G L+ AD + IE R++A ++ +D I+AF +G D Sbjct: 653 -------IRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHD 705 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + T + F P+ +V+ +QR K M GL Sbjct: 706 FHAATASSVFGVPVAEVTADQRRKIKAMNY--------------GLAYGLS--------- 742 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + A GV +++ Sbjct: 743 ---------------------AFGLSQQLGITAEEARGLMDNYFAGFGGVRDYLQEVVAR 781 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR D+ D ++ Sbjct: 782 ARHDGYTSTIL--------------------------GRRRYLPDLVSDNRQRRDMAERM 815 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641 +Q + DI+ M ++L VHDE+V E Sbjct: 816 ---------ALNAPIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGER 866 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKA 665 ++ L M + +PL+ Sbjct: 867 DTLEALVRSQMGEAYP--LSVPLEV 889 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 93/602 (15%), Positives = 168/602 (27%), Gaps = 145/602 (24%) Query: 88 IPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 I S R T V A S + SE D P Sbjct: 436 IDSDRLFDTGVAAYLLESDRSSFDINGLVELYFGSELP---------------EPTDEIP 480 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 RA +A D + + ELF L E L + + RG +D Sbjct: 481 AAALRAVAARALVPVLTKKLED-DGSLELFTSL------EMQLLPVLAAMERRGLYVDPQ 533 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------ 258 + + + ++ + I + + L LF + + + + Sbjct: 534 KLAEQSAQLGEDIAQRVASIHQTAGEDF-NLDSPSQLSHILFDVLKLPTYGLKKTRTGFY 592 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L +L + L+ L + D R+ TL + TG Sbjct: 593 STNAKVLGELAQEYQIVADVLEYRERAKIKSTYLDALPSLIRGDKRIHTTLNQTV-TATG 651 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P VR+ G + Sbjct: 652 RLSSSDPNLQNIP------------------------TRSELGHRVRTAFTVPEGSVFLA 687 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA ++ ++ + AF +G D + T A+ F P+++V+ R+ Sbjct: 688 CDYSQIELRLLAHLSADEHLVAAFNSGADFHAATAARVFGVPVEEVTPALRSRA------ 741 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 +A + + Q A K+ Sbjct: 742 --------------------------------------KAVNFGIVYGQQAFGLATSLKI 763 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + GV L + + G +I+ Sbjct: 764 SRKEAQEMIDRYFDAYPGVRAY---LDDSVRTAHECGYAITMY----------------- 803 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 R+ ++ + R + +Q + DI+ M N Sbjct: 804 ------GRKRH---IREFNQSNRQLIAFGERTAM------NHPMQGSAADIIKIAMINVE 848 Query: 619 KNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L +HDE+ E P++ +V TL M + +PL A+ Sbjct: 849 KRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDVVT--LRVPLIADVSYGS 906 Query: 672 RY 673 + Sbjct: 907 NW 908 >gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781] gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781] Length = 655 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 168/703 (23%), Positives = 276/703 (39%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 LF+D E S L + G+ Y + + + + D E +P ++ +L Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEVGQPVPKQIVGHLN 65 Query: 63 DETVMCVAHNSLFER----ILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114 VAHN+ F+ ++ ++ G +I + C++ AR NGLP SL AC Sbjct: 66 --GSPFVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL K EG A++ K +P D T A+H + + +Y D +A ++ Sbjct: 124 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVGVW 175 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + +PL + + +D IN RG D++ +++L A +LD ++ LTDG I + Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 294 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL-----PRQERSEEILTQTIQALNR 349 L V GRL+ ++GA GR + PR + + A R Sbjct: 295 LRAHVG--GRLQHHTIYHGALS-GRSTARGAGGAQTLNTARPRPGKKTADCEAILDACLR 351 Query: 350 GETIADPLGLASDCV-------RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G+ + R A G LV ADL+GIEARV W+A + K++A Sbjct: 352 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEA 411 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G D Y ++ D V+K+QR +GK +LALG+ GG F +MA++ G+ L Sbjct: 412 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHLPP 471 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + WRA + W Sbjct: 472 EQVS---------------------------------------EIVYNWRAGRPAFERWW 492 Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 + + G + N ++ + R + + LPS R + Y + + Sbjct: 493 SLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 552 Query: 575 GDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 G + T K+ N Q ++RD+ + + + +IV V+DE + Sbjct: 553 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRVE-EIVHHVYDEAL 611 Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + L M + +W GLPL AEG+ R+RK Sbjct: 612 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 89/653 (13%), Positives = 183/653 (28%), Gaps = 124/653 (18%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIP 89 A A+ +E + + ++L D +V F+ + G D+ Sbjct: 340 IAVAFGNEKNVFVTDLDTAVASEVFKKWLSDASVEKHL----FDTKAAKVLAHRFGFDLK 395 Query: 90 SKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ S+LA + + ++ L+ E + Sbjct: 396 GAKY-DVSLLAYLVDTNDIVKEISDVARRVDV-TILSSDEAVYGKGVKIQIPEDKEV--- 450 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + + + + K L + E L + + +G R+D + + Sbjct: 451 WNQHLAAKVFTIAKAPEKLLKRLEENEQTHLY--WEMELPLSDILARMEIQGIRVDRERL 508 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 +++ + K+++++I +L + T L + LF G+ ++ ++ T Sbjct: 509 VEMGVEFEERLKEIEQEIYELAGEEF-NINSTKQLGVILFEKMGLPVIKKTKTGYSTAVD 567 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L +LIL + + L + DG++ ++TGR S Sbjct: 568 VLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGKIHTRFIQN-LTQTGRLSSV 626 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P +R + + K++ +D + Sbjct: 627 DPNLQNIP------------------------IRTKEGRRIRYAFLPEHDDWKILSSDYS 662 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGY 441 IE RVLA IAG+ I+AF N DI+ T + F D V+ E R K + + Y Sbjct: 663 QIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVY 722 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L++ + E+++ + + + E + L Sbjct: 723 G-----ISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHR 777 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 R + +L + + I Sbjct: 778 ---------RRYLPDIHSSNFNLRSFAERTAMNSPIQGSAADIL----------KMAMIE 818 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 L R + Sbjct: 819 LDREMRERKFKANL--------------------------------------LLQVHDEL 840 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V DE+ S+ +L +M S +PL+A+ + Sbjct: 841 IFEVPQ--DEL---------ESLQSLVEGVMENAVS--LKVPLRADSNVGDNW 880 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 83/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134 + + G+ + ++A ++ + Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193 A + + L ++L + ER L + Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG R+D+ L+ L + +E ++L+ +I +L + L LF G+ Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEIFRLAGHPF-NLNSRDQLERVLFDELGLTP 502 Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + L +LIL S L+ L V GRL Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A+ TGR S QN+P +R Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G L+ AD + IE RVLA ++G++ + F G+DI+ T A F V + Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y A L + F+ + + + + Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G R + + + E + Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + L Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + +VL E P+ L +M +PL+ E Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820 Query: 667 GYEAKRY 673 + + Sbjct: 821 VGVGRDW 827 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 106/673 (15%), Positives = 186/673 (27%), Gaps = 144/673 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLF 75 G AYA A A L D + SA L +L E + H + Sbjct: 331 KPAGGDAYA-------LAIADTKHHAVLVDLADISAEDEKALATWLASEN-PKMLHGAKA 382 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + G ++ T++ A + L + Sbjct: 383 AYHMLAG-RGFELHGV-VHDTAIAAYLLRPGQRTYELADVYQ-----------RHLQRQL 429 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQT 193 A+ + E T++L + D E L + Sbjct: 430 STNDNGGQLALLDAADDQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILAR 489 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G +D+ + + + + + +E +L + + L++ LF G+ Sbjct: 490 MEAIGIAVDVATLEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPK 549 Query: 254 VDMSEG-----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ + D +L L L V+ DGR+ T Sbjct: 550 TKKTKTGYSTAAAEIEALAIKNPHPFLDHLLAHRQYQKMKTT-LEGLIREVAPDGRIHTT 608 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 AS TGR S QN+P A +RS Sbjct: 609 FNQTVAS-TGRLSSTDPNLQNIP------------------------VRTEAGRKIRSGF 643 Query: 369 IASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + G L+ AD + IE RV+A ++ + I+A+ GED++ +K FN PID V+ E Sbjct: 644 VVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPE 703 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K M GL SQ + + Sbjct: 704 LRRQVKAMSYG--------------LVYGLSAFGLSQQLSIPAG---------------- 733 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + +++ + GV + +++ E Sbjct: 734 --------------EAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLF--------- 770 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR ++ D A R +Q + Sbjct: 771 -----------------GRRRYLPELTSDN---RVARENAERAA------LNAPIQGTAA 804 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKG 660 DI+ M ++ ++L VHDE+V E V + M Sbjct: 805 DIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LS 862 Query: 661 LPLKAEGYEAKRY 673 +PL+ + + Sbjct: 863 VPLEVSAGDGVNW 875 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 181/656 (27%), Gaps = 142/656 (21%) Query: 34 AYAWDDEP-----VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 A A+ D+ V+L D + + L Q+L + H + + GI++ Sbjct: 348 AIAFVDQERHGLQVELGDLSAEDD--KALAQWLASDA-PKYFHEAKAAFHMLAG-RGIEL 403 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A G A Sbjct: 404 AGIA-HDTALAAYLLRPGQRTYALADVYQRHLQK---TLGAATEQLSLLDDSSLVDQAAA 459 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + + EL+ L E L + + G +D+D++ Sbjct: 460 ILELAE-----RLSAELQEIDSFELYTDL------ELPLVTILARMEATGIAVDVDILET 508 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 ++ ++ + + +L + L+ LF + ++ T + Sbjct: 509 QKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEI 568 Query: 266 SHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 D +L L L + V DGR+ T AS TGR S Sbjct: 569 EQLAAKNPHPFLDHLLAHREYQKMKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSST 626 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLA 382 QN+P A +RS I +G +L+ AD + Sbjct: 627 EPNLQNIP------------------------VRTEAGRQIRSVFIVGDGFDELMTADYS 662 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RV+A ++ + I+A+ GED++ ++ F+ P+D+V+ E R K M Sbjct: 663 QIEMRVMAHLSADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYG---- 718 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GL + + + Sbjct: 719 ----------LVYGLS------------------------------AFGLSQQLGIPAGE 738 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + +++ + GV + ++ Sbjct: 739 AKSIMESYFERFGGVKKYLDEVVVQARKDGYTATLF------------------------ 774 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR ++ D + +Q + DI+ M + Sbjct: 775 --GRRRYLPELNSDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDRALQ 823 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V + M +PL+ K + Sbjct: 824 GMKSRVLLQVHDELVVEVAPGEADEVREILEREMDSAIE--LNVPLEVSAGAGKDW 877 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 86/653 (13%), Positives = 191/653 (29%), Gaps = 123/653 (18%) Query: 33 CAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 +A + V + + S + +L + +E ++ N +++ K LG+ + Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKA-QLVLFKRLGLALKGV 406 Query: 92 RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + ++A ++ L + + GK +F + + Sbjct: 407 NF-DFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGA--KFTVPTDTNLLLSHV 463 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 ++L + ++ +D E L + + +G +++ + + Sbjct: 464 AHKADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRN 518 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 + +++ + + + + G + L + LF G+ ++ ++ T +L Sbjct: 519 KGKDLSERIADI-QSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVL 577 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 D IL + ++ L + D ++ ++TGR S Sbjct: 578 EKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQT-LTQTGRLSSVD 636 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P +R+ + ++ AD + Sbjct: 637 PNLQNIP------------------------MRSEEGRLIRTAFVPSHPNWQIFGADYSQ 672 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ 442 IE RVLA + G+ KAF NGEDI+ T F D V +R K + + Y Sbjct: 673 IELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIVYG 732 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + + F+++ Q ++ E + + Sbjct: 733 -----ISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHR- 786 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 R + +L + SA + + + + Sbjct: 787 --------RRYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVN--------- 829 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 L EN +QA + Sbjct: 830 ---------------------------------EALRENNLQA-------RMLLQVH--- 846 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 DE++ ETP + + ++M A +PLK + + + Sbjct: 847 --------DELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889 >gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121] Length = 466 Score = 263 bits (672), Expect = 8e-68, Method: Composition-based stats. Identities = 84/543 (15%), Positives = 154/543 (28%), Gaps = 130/543 (23%) Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + + + + EY + + A EL L + + + G Sbjct: 39 ASIIEAVSESKAEMQKQLKEYNQESLLADLEL------------PLAEILSEMEEIGIFT 86 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D+ + ++++ I ++ L ++I + + L + LF + ++ ++ Sbjct: 87 DVKDLQQMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKTGY 145 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L D IL S + L + +S D R+ A +TG Sbjct: 146 STAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISDDHRIHTRFNQTLA-QTG 204 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R S+ ++ Sbjct: 205 RLSSVDPNLQNIP------------------------IRLEEGRKIRKAFKPTSSDSVIL 240 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I ++ +AF NG DI+ T K F+ D+V R K + Sbjct: 241 SADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNF 300 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ SQ+ Sbjct: 301 --------------GIVYGISDYGLSQS------------------------------LG 316 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + GV Q D+ + + RR Sbjct: 317 ITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETLLHRRRYIPDITSRNFNL--- 373 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + +NT +Q + DI+ M Sbjct: 374 --------------RSFAERTAMNT------------------PIQGSAADIIKLAMVQF 401 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670 K ++L VHDE++ E P S + +M +PLK + Sbjct: 402 NKEVQHTDYHAKLLLQVHDELIFEVPKDEVASFSKFVEEIMESALK--LDVPLKVDSSYG 459 Query: 671 KRY 673 + Sbjct: 460 ATW 462 >gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of Bemisia tabaci] Length = 939 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 100/686 (14%), Positives = 176/686 (25%), Gaps = 148/686 (21%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQYLRDET 65 T+ + G+ + A + A+A+ + L + Sbjct: 363 TKWAFDIATTGMDPHL--ADLLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTD 420 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 V+ V HN I+ ++ G+ I T + L A + + + Sbjct: 421 VLKVGHNLKNALIVMQRH-GLSIAP-PLFDTMIA-------HGLVAADMDHHLTTLSE-- 469 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-- 183 S PP + + + Y + ++ ++ Sbjct: 470 -------QYLNHRSYLKPPNRAEKES-----EGIKNYAGEGADLVLHIYPKIAQALREHK 517 Query: 184 --------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 E L + + G IDL + L + K L E I L + Sbjct: 518 VATLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQTTF-NI 576 Query: 236 RQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF + T ++IL+ + LI+ Sbjct: 577 DSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYRTWQKLRST 636 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + D RL T + TGR S Q +P Sbjct: 637 YVDALPTLLHPIDQRLHATYHQTVVT-TGRLSATGPNLQQIP------------------ 677 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I G L AD + IE R++A A + I AF + +DI Sbjct: 678 ------IRTPTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQDI 731 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T K F T I V +E R K+ + Y L + Sbjct: 732 HQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLS----ERMEHLSRKEAAELI 785 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + FE + +++ L+G L + Sbjct: 786 EAYFEAFPGIKTYIDDSIAHAEANGYVRTLLGRKRFL---------PDLYASNPTTRGVA 836 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + +NT Sbjct: 837 RR-----------------------------------------------NAINTPIQG-- 847 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TL 647 KL +Q D K +++ VHDE+V P + + + Sbjct: 848 -SAAEMIKLAMIHIQ----DW-----LEKHKLSTKLIIQVHDELVFNVPRSEIADIQHHI 897 Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRY 673 LM + +P+K + Sbjct: 898 PLLMATALPL-ENVPIKVNWNIGANW 922 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 99/584 (16%), Positives = 168/584 (28%), Gaps = 131/584 (22%) Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K L + E LIA D+ + + + + A Sbjct: 381 KALATHLQVRGVSVEPGEDPLLIAYLL----DNTVTNASLLAQAHLGAPWPDDAPTRALA 436 Query: 170 TRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 T +L L P D ER L + + RG R+D + L + + ++L Sbjct: 437 TAQLLTALRPQLDEKRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARAQEL 496 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAK 275 D I +L S L L+ G+ ++ T S L Sbjct: 497 DARIQELAGHPF-SVNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEHPII 555 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L + L+ L V+ GRL T A TGR S QN+P Sbjct: 556 PLLLEYRELTKLKGTYLDPLPNLVNPLTGRLHTTFAQT-AVATGRLSSLNPNLQNIP--- 611 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G L+ AD + IE R+LA IA Sbjct: 612 ---------------------IRSETGREIRKGFIADDGFCLISADYSQIELRLLAHIAD 650 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +AF G DI+ T A+ D V+ QR K + Sbjct: 651 DALMQEAFVGGADIHRRTAAQVLGVMEDLVTPNQRRAAKTVN--------------FGVL 696 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G+ + S + + + + A + Sbjct: 697 YGMSAHRLSND------------------------------LGISFAEASRFIERYFATY 726 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + + + ++ RR + +++ Sbjct: 727 PRIREYIDA--------------------------TLAFGREHGYVETMYGRRRLVPELR 760 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHD 630 + A ++ +Q + DI+ M + G ++L VHD Sbjct: 761 SANRTMREAGERV---------AYNMPIQGTAADIIKIAMVELDEQLSALGARLLLQVHD 811 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P V L +M + +PL+ E + Sbjct: 812 ELLIEAPSDRADEVAALTRRVMEGVVT--LKVPLRVEIGTGPNW 853 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 97/647 (14%), Positives = 190/647 (29%), Gaps = 151/647 (23%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTNGL---PS 107 L ++L+D V H+ + I+ T + + Sbjct: 381 DALKEWLQDPDHPIVVHDGKGLLHMLSSEGLTATNIE------HDTRLASYLIHPDFGSF 434 Query: 108 SLKNACLALNFSEHLTKMEE--------GKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L++ + G+ + S D W Sbjct: 435 DLESVVRRRLGRDLYDSDVVSWEEEHRSGRQMSLDVGDLSSDGDDDRSVAGISWPEWAKL 494 Query: 160 GEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 ++ + +E EL K+L + E L + + G +++ + + L++ Sbjct: 495 ADHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMTALRDST 554 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILS 266 A++ K E+ L D + L+ LF + ++ ++ + Sbjct: 555 AEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTGYSTAAKAIERLAE 614 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 L L+ +R + L+ L +A++SDGR+ T A+ TGR S Sbjct: 615 KHPHPFLDH-LLAHREYQKRVST--LDGLIKAIASDGRIHTTFNQT-ATATGRLSSTDPN 670 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIE 385 QN+P +R+ + G + L+ AD + IE Sbjct: 671 LQNIP------------------------VRTEEGRQIRAAFVPGEGYEALLTADYSQIE 706 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RV+A + + I+A+ +GED++ ++ F+ P+++V+ E R K + L Y Sbjct: 707 MRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLVYG--- 763 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 LD + + Sbjct: 764 --LSEYGLSQQLD---------------------------------------ISVREAKK 782 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + GV + ++ + + Sbjct: 783 IMVKYFERFGGVRRYLNEVVDRARKDEYTSTML--------------------------G 816 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------K 619 RR SD+ A R +Q + DI+ M K Sbjct: 817 RRRYLSDLASLN---RQARENAERAA------LNAPIQGTAADIIKVAMIRVDAALKKEK 867 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665 ++L VHDE+ E + V + M + A +PL+ Sbjct: 868 LASRVLLQVHDELDVEVANGELEQVRGIIQREMDEAIELA--VPLEV 912 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134 + + G+ + ++A ++ + Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193 A + + L ++L + ER L + Sbjct: 400 ----------------FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAH 443 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG R+D+ L+ L + +E ++L+ ++ +L + L LF G+ Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLEKVLFDELGLTP 502 Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + L +LIL S L+ L V GRL Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A+ TGR S QN+P +R Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G L+ AD + IE RVLA ++G++ + F G+DI+ T A F V + Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y A L + F+ + + + + Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G R + + + E + Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + L Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + +VL E P+ L +M +PL+ E Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820 Query: 667 GYEAKRY 673 + + Sbjct: 821 VGVGRDW 827 >gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] Length = 524 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 90/635 (14%), Positives = 176/635 (27%), Gaps = 138/635 (21%) Query: 57 LLQYLRDETVMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++L + + V ++ + LG+++ + + + + + Sbjct: 6 FKEFLEKTS-LKV-----YDFKKAKVLLNRLGLNLQAPAF-DSRLAKYLLSTVEN-NEIS 57 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RE 172 + + KG + P H+ A ++ V Sbjct: 58 TIASLYSQTY----LVDDETFYGKGVKKAIPEREKFLEHL-ARKVAVLVETEPVLLEKLS 112 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L L D E+ L + + G ++ + +L++Q ++L ++I +L Sbjct: 113 EHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEF 172 Query: 233 RSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF G+ T +L IL+ + Sbjct: 173 -NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKI 231 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + + DG++ ++TGR S QN+P Sbjct: 232 QSTYVIGLQDWILDDGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP---------------- 274 Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + L+ +D + IE RVLA I+ ++ IKAF G Sbjct: 275 --------VRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGA 326 Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI+ +T + F + V+ R K + + Y L Sbjct: 327 DIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVY-----GISDFGLANNL-------- 373 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + G+ +++ Sbjct: 374 -------------------------------GISRKKAKAYIDTYFERFPGIKNYMEEVV 402 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RR D+ + Sbjct: 403 REARDKGYVETLFK--------------------------RRRELPDINSRNFNIRGFA- 435 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDT 639 R + +Q + DIL M K ++L VHDEIV E P + Sbjct: 436 --ERTAI------NSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKS 487 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 +V L M + +PL A+ E + Sbjct: 488 ELAAVKDLVKQTMEEAIQ--LSVPLIADENEGATW 520 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 81/560 (14%), Positives = 144/560 (25%), Gaps = 125/560 (22%) Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 SLK + GK I + + A + Sbjct: 524 SLKEGKEQEKTEPVREEQTAGKVSIRTALNPAEQCICHMAYTAWKSRERLTKKLEELDMK 583 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E + E L + G + + + E + + ++L+++I Sbjct: 584 ELFYTI----------EMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY-G 632 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 G + L LF + ++ T +L IL+ Sbjct: 633 ETGEHFNINSPKQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQL 692 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + L+ + DGR+ GT + TGR S QN+P Sbjct: 693 TKLKSTYADGLAGYIREDGRIHGTFNQT-ITATGRLSSTEPNLQNIP------------- 738 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G V AD + IE RVLA ++G++ I+A+ Sbjct: 739 -----------VRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRK 787 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 EDI+ T ++ F+ P+++V+ QR K + G+ Sbjct: 788 AEDIHAITASEVFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS------ 827 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + V + L Sbjct: 828 ------------------------AFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRL 863 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E RR + G+ + Sbjct: 864 VEEGKEKGYVTTMFKRRRPVPELSS-----------------KNFMQRSFGERVAM---- 902 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 + +Q + DI+ M IVL VHDE++ E Sbjct: 903 --------------NSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIEAKK 948 Query: 639 TPYFSVGTLC-SLMTKNPSW 657 V T+ M Sbjct: 949 EELKRVQTILSEEMKHAADL 968 >gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424] gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424] Length = 873 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 86/656 (13%), Positives = 168/656 (25%), Gaps = 137/656 (20%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LF--KKTLGIDIPSK 91 A + + + YL + V ++ + K GI + Sbjct: 334 IAVYKDENVYIFSEDNFFENKFVRNYLESDAEKVV-----YDYKKILYIAKRNGISDIAG 388 Query: 92 RWICTSVLARTNGLPSS--LKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + + L L + GK + I Sbjct: 389 NVFDVKIASYLLDVTVKTELDKIVFNTLGNIIKSEEEIYGKGVKRTLPTNEIL------Y 442 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 +F + E L E + + + G + + Sbjct: 443 PYLAQVVKSIFDLKEIQSARLKEENMDSLYKNI--EVKVARVLANMEYEGIHVSKKALED 500 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 + + + + K L+ I L + L + LF G+ V ++ T +L Sbjct: 501 MSDELDERIKILEASIHTLAGSEF-NIASPKQLGIVLFEDLGLPPVKKTKTGYSTSVEVL 559 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + LI+ + L + ++ G++ + ++TGR S Sbjct: 560 EQLQHSHEIIPLIMEYRVLTKLNSTYAKGLVKDITRKGKIHTRYEQT-LTQTGRLSSVNP 618 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384 QN+P +R I S+ + ++ D + I Sbjct: 619 NLQNIP------------------------TRIEEGKKIRKAFIPASDDRVILSIDYSQI 654 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +A + I AF + DI+ T ++ +D+V+ R K + + Y Sbjct: 655 ELRVLAHMAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVYG-- 712 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + Sbjct: 713 ---ISDFGLSNNL---------------------------------------GITRKRAK 730 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + GV + D+ E + Sbjct: 731 EFIDKYLETFSGVNKYMTDIVEFAKEHGYVETLYN------------------------- 765 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 RR ++ + +Q + DI+ M NA T Sbjct: 766 -RRRALPEINAKN---------KIVASLNARLAMNTPIQGTAADIIKLAMINAFDYIEKT 815 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ + + +M + + LKAE + Sbjct: 816 KVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEAVE--LDVKLKAEASSGSSW 869 >gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] Length = 886 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 84/652 (12%), Positives = 174/652 (26%), Gaps = 119/652 (18%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L + D L R + L + L D V N+ + + + LG+D+ Sbjct: 339 LAGFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGV 397 Query: 92 RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + + + GK + Sbjct: 398 DF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 456 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +A ++ + Y + L++ D ER L + + G +D + Sbjct: 457 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 509 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ + + +L++ I + + L + LF + ++ ++ T + Sbjct: 510 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 568 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L IL S + L + + D + T + TGR S Sbjct: 569 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 628 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R S G K+ +D + Sbjct: 629 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 664 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA + G+ F G+DI+ T + F+ D+V+ R K + + Y Sbjct: 665 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 724 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + S F+++ E + + + + + L Sbjct: 725 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 778 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + I + Sbjct: 779 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 815 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 R +G + + + Sbjct: 816 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 839 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P+ ++ L S+M +PLK E + Sbjct: 840 --------ELVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 86/619 (13%), Positives = 176/619 (28%), Gaps = 118/619 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + L D + N F+ + LGI + + + + + + + Sbjct: 366 KIKAILEDPKIKI---NV-FDSKRTYVGLHRLGIKLTAVNF-DILLQSYLLDTNDNSNDL 420 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L ++ + KG+ + P NH+ + + ++ Sbjct: 421 G-QLAHEHDYDAIDT---DDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELV 476 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ D E L ++ + G ++D + + ++Q + +++ +I Sbjct: 477 KNEQNNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAGEEF 536 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF + ++ ++ T +L D ILN S Sbjct: 537 -NLNSPKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYRTLSKIKS 595 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + + + T ++TGR S QN+P Sbjct: 596 TYVDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIP------------------ 637 Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G ++ +D + IE RVLA I G+ +AF NGEDI Sbjct: 638 ------VRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDI 691 Query: 409 YVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + TT K F +V+ R K + + Y + + + Sbjct: 692 HATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYG-----ISDYGLSQNIGISRKDAKKF 746 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + F+++ + + E + + R + +L Sbjct: 747 IETYFKEFPGVKKYIDESVQLAKEQGYVETIAHR---------RRYLPDINSSSFNLRSF 797 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + ++ D++ + N Sbjct: 798 AERTAMNTPIQGSAADII---------------------KIAMIDMENELEKRN------ 830 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 L M L VHDE++ E PD + L Sbjct: 831 ----------------------LKSRML----------LQVHDELIFEVPDEEMTLMKEL 858 Query: 648 C-SLMTKNPSWAKGLPLKA 665 +M +PLK Sbjct: 859 VPKVMDSAVK--LDVPLKV 875 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134 + + G+ + ++A ++ + Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193 A + + L ++L + ER L + Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG R+D+ L+ L + +E ++L+ ++ +L + L LF G+ Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502 Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + L +LIL S L+ L V GRL Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A+ TGR S QN+P +R Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G L+ AD + IE RVLA ++G++ + F G+DI+ T A F V + Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y A L + F+ + + + + Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G R + + + E + Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + L Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + +VL E P+ L +M +PL+ E Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENTYP--LDVPLEVE 820 Query: 667 GYEAKRY 673 + + Sbjct: 821 VGVGRDW 827 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 110/678 (16%), Positives = 200/678 (29%), Gaps = 139/678 (20%) Query: 16 LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNS 73 L VG + Y A A A D D T + L ++L D H + Sbjct: 339 LAVVGTYTPYDGDAT--AVAIASADGDGAYIDTTTVTPDDEAALAEWLADAARPKALHEA 396 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKA 130 G ++ T++ A +L + L E + + Sbjct: 397 KQAIHALAG-RGWEL-GGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDD---G 451 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + +A ++A + DVE R L L+D E + + Sbjct: 452 EQQLSLLDEDGAGDAKAAQAQMLRARAVIDLADALDVELERIESAGL--LTDMELPVQRV 509 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +D D + LQ A ++ + + G + L++ LF G Sbjct: 510 LAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVI-GKQINLGSPKQLQVVLFDELG 568 Query: 251 IDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + L+++ + L +L + + ++ L ++V++DG Sbjct: 569 MPKTKKTKTGYTTDADALQTLFDKTGHPFLEH--LLTHRDVTRLKVT-VDGLLKSVAADG 625 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T A TGR S QN+P A Sbjct: 626 RIHTTFNQTIA-ATGRLSSTEPNLQNIP------------------------VRTEAGRE 660 Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ D + IE R++A ++ ++ I+AF GED++ A+AF PID Sbjct: 661 IRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFGVPID 720 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ E R K M + GL Sbjct: 721 EVTAELRRRVKAM--------------SYGLAYGLS------------------------ 742 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A + K+ + + ++ GV + + + + Sbjct: 743 ------AYGLATQLKISNDEAKEQMDQYFSRFGGVRDYLRAVVDQARKDGYTSTVL---- 792 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 RR D+ +R + Sbjct: 793 ----------------------GRRRYLPDLDSGDR---------LRREAAERAALNAPI 821 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + DI+ M K ++L VHDE++ E + S+ L M Sbjct: 822 QGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSAY 881 Query: 656 SWAKGLPLKAEGYEAKRY 673 +PL+ + + Sbjct: 882 P--LDVPLEVSVGYGRSW 897 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIAR 134 + + G+ + ++A ++ + Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTNPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193 A + + L ++L + ER L + Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG R+D+ L+ L + +E ++L+ ++ +L + L LF G+ Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502 Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + L +LIL S L+ L V GRL Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A+ TGR S QN+P +R Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G L+ AD + IE RVLA ++G++ + F G+DI+ T A F V + Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y A L + F+ + + + + Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G R + + + E + Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + L Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + +VL E P+ L +M +PL+ E Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820 Query: 667 GYEAKRY 673 + + Sbjct: 821 VGVGRDW 827 >gi|157265305|ref|YP_001467864.1| DNA polymerase I [Thermus phage P23-45] gi|156905200|gb|ABU96844.1| DNA polymerase I [Thermus phage P23-45] Length = 728 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 111/779 (14%), Positives = 205/779 (26%), Gaps = 200/779 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-------- 54 ++ +D ET P Y + A A + Q + Sbjct: 24 RVALDTETYGSDPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLP 78 Query: 55 -SDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLK 110 + Q L V HN+ ++R + TL I + T V LK Sbjct: 79 REAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLK 138 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------------- 153 L E + E L ++ + H Sbjct: 139 EWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVH 198 Query: 154 --------------QAWQLFGE------------------------YCKRDVEATRELFK 175 +A+Q Y D T L++ Sbjct: 199 NGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWE 258 Query: 176 R------LIPLS-----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER------- 217 L P + E + + RG +D + + +++E I Sbjct: 259 HVEVFFELHPKLHALYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEA 318 Query: 218 KKLDEDIVKLTDGIIRSS-RQTYALRMYLFLITGIDL--------VDMSEGTLKSIL--- 265 ++L + ++ + L L+ + G + S+ + +L Sbjct: 319 QELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLS 378 Query: 266 -SHSNITQLAKDLILNRLA---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 LAK + + A +++ E V GRL G + +GR S Sbjct: 379 PKDKRKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMS 437 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QNLPR E +Q +R +A G V AD Sbjct: 438 SSNPNLQNLPRLLPEEVAEKPYLQ---------------GIDIRKAFVADPGYIFVSADY 482 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA-------KAFNTPIDKVSKEQRAIGKV 434 A +E V A ++G+ G D++ T + + K+ R KV Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + AL Y G + FE + ++ + + E Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + DL + + ++ + Sbjct: 598 VE--------YPIYGYIKR--------MDLPQALRKLPKDKWPLVLN------------- 628 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 P +R+ Y+ ++ ++Q S ++ + + Sbjct: 629 ------NDPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666 + +++ VHDEIV + V + M + G+ LKAE Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 99/652 (15%), Positives = 183/652 (28%), Gaps = 133/652 (20%) Query: 39 DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D D + L ++L D H + + G + T+ Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLNGVT-SDTA 416 Query: 98 VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + A +L + L E + E + D + ++ Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE----QQQLSLLDDDDTDVAAAQTAILR 472 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 A + D E R L+ D E + + + G +DL ++ LQ A Sbjct: 473 ARAVIDLADALDAELDRIDSTGLLA--DMELPVQHVLAEMETAGIAVDLTMLGGLQSHFA 530 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNIT 271 + + + G + L++ LF G+ ++ T L Sbjct: 531 DQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDK 589 Query: 272 --QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L + + ++ L +V+ DGR+ T A TGR S QN Sbjct: 590 TGHPFLQHLLAHRDVTRLKVT-VDGLLNSVADDGRIHTTFNQTIA-ATGRLSSTEPNLQN 647 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARV 388 +P A +R + +G +L+ AD + IE R+ Sbjct: 648 IP------------------------IRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRI 683 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A ++ ++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 684 MAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG---------- 733 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 GL + + K+ ++ Sbjct: 734 ----LAYGLS------------------------------AYGLSSQLKISTEDAKVQMD 759 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + ++ GV + E + RR Sbjct: 760 QYFSRFGGVRDYLMAVVEQARKDGYTSTVL--------------------------GRRR 793 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 ++ R +Q + DI+ M K Sbjct: 794 YLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIEVDKALKEHALKS 844 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + L M +PL+ + + Sbjct: 845 RMLLQVHDELLFEVAAGEREQIEALVRDKMGSAYP--LDVPLEVSVGFGRSW 894 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 110/676 (16%), Positives = 186/676 (27%), Gaps = 151/676 (22%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFK 81 ++ A+A D D T+ L +L D + H++ + Sbjct: 351 WGRGTGDVSGLAFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALA 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKG 138 G + T++ A L+ G+ L G Sbjct: 411 -ARGFTLAGVA-ADTALEAYLAQSGRRSFDLEPLAE----------EVLGRRLSPA---G 455 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQ 192 + ++ + Q+ + D L +L +D E L + Sbjct: 456 ADENQGTLFADEDAEAERQMAAAHAVLD--LADALRGKLAETGAEQLLTDIELPLVGVLA 513 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ID L L++ + E K + + L+ LF G+ Sbjct: 514 EMEQVGIAIDERLFQDLEKGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMP 573 Query: 253 LVD-------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 +L + + + L D +L + + + LS++VS D R+ Sbjct: 574 KTKKIKTGYTTDADSLAWLQAQTQHPFL--DHLLRWREVNRLKTV-VEGLSKSVSPDTRI 630 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T A TGR S QN+P L +R Sbjct: 631 HTTYNQMIA-ATGRLSSVDPNLQNIP------------------------IRTLEGQQIR 665 Query: 366 SCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IA G + L+ AD + IE R++A ++ + I+AF +GED++ T AK F+ V Sbjct: 666 KAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAV 725 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 E R K M L GL SQ + + Sbjct: 726 EPEHRRRIKAMSYGL--------------AYGLSAFGLSQQLGIETG------------- 758 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + GV DL Sbjct: 759 -----------------EAAKMMEDYFQRFGGVRDYLHDLVVQARATGYTETMF------ 795 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 RR D+ D ++ +Q Sbjct: 796 --------------------GRRRYLPDLASDNRQRREMAERM---------ALNAPIQG 826 Query: 605 ISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657 + DI+ M + ++L VHDE+V E V L M Sbjct: 827 SAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMGSAAE- 885 Query: 658 AKGLPLKAEGYEAKRY 673 +PL A+ + Sbjct: 886 -LRVPLDVSVGMAENW 900 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 127/714 (17%), Positives = 209/714 (29%), Gaps = 171/714 (23%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +DIET P I+L A + PV L + L +++ Sbjct: 71 LDIETTGLDPHTS----------EISLIQIAAPNRPVILIEF-RGITNKETLRRFIEHPK 119 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL--ALNFSEH 121 + V HN FE K LGI+ WI T ++++ GLP +L+ L + Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDL 179 Query: 122 LTKMEEGKALIARF----------CKGSIDSPPYDCTRANHVQAW-----QLFGEYCKRD 166 ++ K L + Y ++ V W Q +Y D Sbjct: 180 TRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239 Query: 167 VEATRELFKRLI---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L + L E + G +DLD +L + I R Sbjct: 240 AAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299 Query: 218 KKLDEDIVK-----------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 + + + + + L GI S+ TL + Sbjct: 300 EDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDTLDKLSE 358 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + I+ S + L V+ R+ + A +GR+S Sbjct: 359 NHPEVF----TIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRA-ASGRFSFSNP 413 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 Q +PR+ RSC + + G KL++AD + IE Sbjct: 414 NLQQIPRE----------------------------RQYRSCFVPAPGYKLIIADYSQIE 445 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+ A IA + I A+ N +D++ T A ID+V+K++R +GK + L Y GA Sbjct: 446 LRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGA 505 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + A E + + Sbjct: 506 TKLRIYA--------------------------------------ETNYGVSMTFDEAQR 527 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + G+ Q +D + + + I S Sbjct: 528 FRDNFFKGYPGLHQWHQD------TACKLRTT------------------KVKDIRTLSG 563 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNG 621 R + D S L VQ S DI + + G Sbjct: 564 RLRRWKDEPPLTS------------------LLNTPVQGTSADITKLALHKLNSDLDEIG 605 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS-WAKGLPLKAEGYEAKRY 673 ++ VHDEIV E P+ L M + K +P+ E A + Sbjct: 606 GFPIVVVHDEIVLEVPEDHVAEGSAMLEEAMVSAGKRFLKSVPVVVEAAIADSW 659 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 102/657 (15%), Positives = 182/657 (27%), Gaps = 137/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A L D + SA L +L E + H + + G ++ Sbjct: 365 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLAG-RGFELHGV 422 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A + L + A+ Sbjct: 423 -VHDTAIAAYLLRPGQRTYELADVYQ-----------RHLQRQLSTNDNGGQLTLLDAAD 470 Query: 152 HVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + E T++L + D E L + + G +D+ + + Sbjct: 471 DQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQ 530 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSI 264 + + + +E +L + + L++ LF G+ ++ + Sbjct: 531 LKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIE 590 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 D +L L L V+ DGR+ T AS TGR S Sbjct: 591 ALAIKNPHPFLDHLLAHRQYQKMKTT-LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTD 648 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P A +RS + G L+ AD + Sbjct: 649 PNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADYSQ 684 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RV+A ++ + I+A+ GED++ +K FN PID V+ E R K M Sbjct: 685 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYG----- 739 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL SQ + + Sbjct: 740 ---------LVYGLSAFGLSQQLSIPAG------------------------------EA 760 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + +++ + GV + +++ E Sbjct: 761 KQIMESYFERFGGVQRYLREIVEEARKAGYTETLF------------------------- 795 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RR ++ D A R +Q + DI+ M ++ Sbjct: 796 -GRRRYLPELTSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDRSLKE 845 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V + M +PL+ + + Sbjct: 846 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 900 >gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] Length = 890 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + + + + D + + L + L D+ + + + ++ LG Sbjct: 344 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 398 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + + ++ + F ++ GK Sbjct: 399 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 456 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 457 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 509 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 ++K++ + L I +L + L + LF + ++ Sbjct: 510 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 568 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ S +N L + + +DG++ + TG Sbjct: 569 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 627 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + L Sbjct: 628 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 663 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 664 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 723 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ ++N Sbjct: 724 F--------------GIVYGISDYGLAKN------------------------------L 739 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + K + + Sbjct: 740 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 782 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR + D+ + + R + +Q + DI+ M Sbjct: 783 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 824 Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 825 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANW 882 Query: 670 AKRY 673 + Sbjct: 883 GHNW 886 >gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] Length = 883 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + + + + D + + L + L D+ + + + ++ LG Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + + ++ + F ++ GK Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 ++K++ + L I +L + L + LF + ++ Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ S +N L + + +DG++ + TG Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + L Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 657 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 716 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ ++N Sbjct: 717 F--------------GIVYGISDYGLAKN------------------------------L 732 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + K + + Sbjct: 733 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 775 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR + D+ + + R + +Q + DI+ M Sbjct: 776 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 817 Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 818 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADANW 875 Query: 670 AKRY 673 + Sbjct: 876 GHNW 879 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 82/652 (12%), Positives = 184/652 (28%), Gaps = 121/652 (18%) Query: 33 CAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 +A + V + + S + +L + +E ++ N +++ K LG+ + Sbjct: 348 IGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKA-QLVLFKRLGLALKGV 406 Query: 92 RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + ++A ++ L + + GK +F + + Sbjct: 407 NF-DFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGA--KFAVPTDTNLLLSHI 463 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 ++L + ++ +D E L + + +G +++ + + Sbjct: 464 AHKADGLFKLEKP-----AFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRN 518 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 + + + + + + + G + L + LF G+ ++ ++ T +L Sbjct: 519 KGKDLYERIADI-QSAIYIEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVDVL 577 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 D IL + ++ L + D ++ ++TGR S Sbjct: 578 EKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQT-LTQTGRLSSVD 636 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P +R+ + ++ AD + Sbjct: 637 PNLQNIP------------------------MRSEEGRLIRTAFVPSHPNWQIFGADYSQ 672 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ 442 IE RVLA + G+ KAF NGEDI+ T F D V +R K + + Y Sbjct: 673 IELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIVYG 732 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + + F+++ Q ++ E + + Sbjct: 733 -----ISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHR- 786 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + +L Sbjct: 787 --------RRYLPDIQAKNFNLRSFAERTAMN---------------------------- 810 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 ++ + N+ QA + Sbjct: 811 ------------SPIQGSAADIIKIAMIKVNEALRKNNL-QA-------RMLLQVH---- 846 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 DE++ ETP + + ++M A +PLK + + + Sbjct: 847 -------DELIFETPVDEIDELTEVVTNVMDSAV--ALDVPLKVDAHHGDTW 889 >gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] Length = 883 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 84/663 (12%), Positives = 184/663 (27%), Gaps = 137/663 (20%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + ++ LGI Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLKRNYVGLQR-LGI 392 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDS 142 + + + + ++ + F ++ GK Sbjct: 393 TLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDTL 450 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 451 YAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQ 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++K++ + L I +L + L + LF + ++ Sbjct: 504 ATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFDKLKLTPAKKTKTGYS 562 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L IL+ S +N L + + +DG++ + TGR Sbjct: 563 TSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGR 621 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + L Sbjct: 622 LSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLFS 657 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437 D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 658 CDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF 717 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ ++N Sbjct: 718 --------------GIVYGISDYGLAKN------------------------------LG 733 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + ++ + K + + Sbjct: 734 ISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH------------------ 775 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR + D+ + + R + +Q + DI+ M Sbjct: 776 --------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKM 818 Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 819 QSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANWG 876 Query: 671 KRY 673 + Sbjct: 877 HNW 879 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 179/662 (27%), Gaps = 154/662 (23%) Query: 33 CAYAWDD-EPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 A+AW + E + + D + P + ++ + L Sbjct: 345 VAFAWGNAEKIYVSKNIDLLTKMKFPEN-----------------TYDFKKNRVLLSHLD 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P ++ L + K+ L + + Sbjct: 388 IELPLVKF-DAM--------------LAKYLISTTEDNKISTIARLFNSGHLATDEEIFG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER---------DLWLLDQTIND 196 T+ LF ++ K + L + E+ L + + Sbjct: 433 KGTKIALPDDAVLFEHLARKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G + + + ++ ++ L +I L + L + LF + + Sbjct: 493 TGIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKK 551 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 ++ T +L IL + + L ++ DG++ Sbjct: 552 TKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-D 610 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 ++TGR S QN+P +R + S Sbjct: 611 LTQTGRLSSVDPNLQNIP------------------------VRLEEGRKIRKAFVPSKD 646 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + F + V+ R Sbjct: 647 SLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNA 706 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y L + + + FE + +++ + + + Sbjct: 707 KAVNFGVVYG-----ISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDK 761 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + R K + ++ Sbjct: 762 GFVETMSHR---------RRKIPDINARNFNVRGFAERTAINSPI--------------- 797 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 +A L K +RD Sbjct: 798 ---------------------------QGSAADILKIAMINLDKAL------SARD-FK- 822 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAK 671 ++L VHDEI+ + P + L M + A +PLK + K Sbjct: 823 ---------SKLLLQVHDEIILDVPLEELDEIKALVKQTMEEAIELA--VPLKVDENTGK 871 Query: 672 RY 673 + Sbjct: 872 TW 873 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 99/623 (15%), Positives = 174/623 (27%), Gaps = 136/623 (21%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 +L D H+ + + G + T++ A L + L Sbjct: 375 WLADPDRAKAGHDLKGPMLALAEA-GFTLAGVT-SDTALAAYLALPGQRSFDLADLTLRY 432 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E E + S D A+ ++A D + R R Sbjct: 433 LHRELK-SDTETNGQLTLDG-----SGEADEAEADAIRARAALELAAALDGDLERRSAAR 486 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L+ + E L + + G D + + +LQ+ + E + G + Sbjct: 487 LLR--EMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAH-GLVGRSFNLG 543 Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAIL 290 L+ LF + T L+ L L+ +R + Sbjct: 544 SPKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLK--T 601 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 +++L + GR+ T A TGR S QN+P Sbjct: 602 VVDSLIPMIDDAGRIHTTFNQMIA-ATGRLSSTDPNLQNIP------------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G L+ AD + IE R++A ++G+ I+AFA+GED++ Sbjct: 642 -----IRTPQGRQIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLH 696 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 A+AF+ P+ +V E R K M + GL Sbjct: 697 TFVAAQAFDLPVSEVDPELRRRIKAM--------------SYGLAYGLS----------- 731 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A + + A+ A+ GV + + + Sbjct: 732 -------------------AFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVDQAR 772 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ D + ++ Sbjct: 773 RDGYTETIM--------------------------GRRRYLPDLTSDNTQRRQMAERM-- 804 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+V E Sbjct: 805 -------ALNAPIQGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVE 857 Query: 644 VGTLCS-LMTKNPSWAKGLPLKA 665 V L M +PL+ Sbjct: 858 VEALVRAEMGAAYE--MSVPLEV 878 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 85/606 (14%), Positives = 157/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 396 ----------GEWTEEAGERATLSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L G + L LF G+ Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLA-GHSFNLNSRDQLERVLFDELGLPAI 503 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 564 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 598 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEE 713 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821 Query: 668 YEAKRY 673 + + Sbjct: 822 GIGEDW 827 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 190/701 (27%), Gaps = 170/701 (24%) Query: 6 IDIE--TRSPQP----------LPKVGVWAYAEQAVITLCAYAWDD-EPVKL---WDRTE 49 ID E T L +G + EQ + A+AW + E + + D Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLP 106 + P + ++ + L I++P ++ Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVKF-DAM--------- 398 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + K+ L + + T+ LF ++ Sbjct: 399 -----LAKYLISTTEDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKI 453 Query: 167 VEATRELFKRLIPLSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 K + L + E+ L + + G + + + ++ ++ Sbjct: 454 KVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKL 513 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 L +I L + L + LF + + ++ T +L Sbjct: 514 ASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPV 572 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL + + L ++ DG++ ++TGR S QN+P Sbjct: 573 VAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP--- 628 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + S L+ +D + IE RVLA I+G Sbjct: 629 ---------------------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ I AF +G DI+ +T + F + V+ R K + + Y Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYG-----ISDFGL 722 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + + FE + +++ + + + + + R K Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHR---------RRK 773 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + ++ Sbjct: 774 IPDINARNFNVRGFAERTAINSPI------------------------------------ 797 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +A L K +RD ++L VHDEI+ Sbjct: 798 ------QGSAADILKIAMINLDKAL------SARD-FK----------SKLLLQVHDEII 834 Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + P + L M + A +PLK + K + Sbjct: 835 LDVPLEELDEIKALVKQTMEEAIELA--VPLKVDENTGKTW 873 >gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] Length = 877 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 90/629 (14%), Positives = 188/629 (29%), Gaps = 124/629 (19%) Query: 56 DLLQYLRDETVMCVAHN--SLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 +L+++L ++ HN +F+ + L I++ + + + +++ Sbjct: 358 ELIEWLEND------HNNKIVFDAKKTYVAAHRLEINLQHIDF-DVMLASYIINPSRTIE 410 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + +++ K+ IA + KG P D H+ A CK + Sbjct: 411 DVQSVVSYYNQNF----VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDI 466 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ L++ E L + + + G D++ + ++Q + ++ L +I + G Sbjct: 467 LSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAA-G 525 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF + ++ ++ T +L D IL S Sbjct: 526 ESFNINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKL 585 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + +S D R+ A +TGR S QN+P Sbjct: 586 QSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIP---------------- 628 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R S+ ++ AD + IE RVLA + ++ +AF +G+ Sbjct: 629 --------IRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGD 680 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T K F D+V+ R K + + Y L + + Sbjct: 681 DIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYG-----ISDYGLSQNLGITRKKAKA 735 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + L+ R + +L Sbjct: 736 FIDDYLASFPGVKQYMTDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNLRS 786 Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + SA + + + Sbjct: 787 FAERTAMNTPIQGSAADIIKLAMVQFD--------------------------------- 813 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 + +RE Y KL + DE++ E P + Sbjct: 814 KNVRETNYHAKL----------------LLQVH-----------DELIFEVPKSEVQDFS 846 Query: 646 T-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + A +PL + + Sbjct: 847 EFVEEIMDNALTLA--VPLLVDSSYGATW 873 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 97/629 (15%), Positives = 178/629 (28%), Gaps = 125/629 (19%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 Q++ ++ H + + G + T++ + Sbjct: 381 QAFAQWIASDS-PKYLHEAKAVFHMLAG-RGYTLNGIE-HDTAIAGYLLRPGQRTYDL-- 435 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATREL 173 K + L + GS +S A + + + T +L Sbjct: 436 ---------KDVYQRHLQRQLGGGSSESGQLSLLDAPDAQELVDSAVAILELSKSLTAQL 486 Query: 174 F--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E L + + G +D+ + + +++ ++ K+ + +L Sbjct: 487 QAIDAYELYREMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDE 546 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK--DLILNRLASSG 286 + L++ LF G+ ++ T + + D +L Sbjct: 547 TLNLSSPKQLQVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQK 606 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L+ L +AV DGR+ T AS TGR S QN+P Sbjct: 607 MKTT-LDGLIKAVGDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP--------------- 649 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANG 405 A +RS + G K L+ AD + IE RV+A ++ + I+A+ G Sbjct: 650 ---------VRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTG 700 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 ED++ +K F+ P+D+V+ E R K M L Y L++ Sbjct: 701 EDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYG-----LSAFGLSQQLNIPAGEAK 755 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 V S FE + + + + +Q + L G R + + Sbjct: 756 VIMESYFERFGGVKRYLDQVVEQARKDGFTSTLFGR---------RRYLPELSSDNRVAR 806 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E ++ V + N Sbjct: 807 ENAERAALNAPIQGTAADII---------------------KIAMLRVDARLTAEN---- 841 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 Q ++L VHDE+V E V Sbjct: 842 ----------------CQ------------------SRVLLQVHDELVLEVASGEQEKVQ 867 Query: 646 TLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M S +PL+ + Sbjct: 868 QLVEEEMDAAIS--LRVPLEVSAGVGTNW 894 >gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4] gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4] Length = 885 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 87/661 (13%), Positives = 181/661 (27%), Gaps = 134/661 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83 A D E D + + L + L ++ V+ N F+ + Sbjct: 339 EFCGFAIGTDKELWVSDDV----ELLREPALSEILANQKVVV---NV-FDGKRTYVGLHR 390 Query: 84 LGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 LG+ + S + + + + L + + E A+ + Sbjct: 391 LGVTLNSINY-DILLQSYLLDTNDNSNDLGQLAHEHDIEDIK-TDAEVYGTGAKRAVPAK 448 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D V + +L+ ++ E L ++ + G + Sbjct: 449 DVLLEHLAHKIDVIGELGRRLQEELINNQQADLYWKI------ELPLSIVLAKMEISGIK 502 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + + +Q + + +L+ I + + L LF ++ ++ Sbjct: 503 VDRERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTG 561 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T ++L D IL+ + ++ L + + S + T ++T Sbjct: 562 YSTAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S QN+P +R + G + Sbjct: 622 GRLSSTDPNLQNIP------------------------IRIEEGKKIRQAFVPSHEGWHI 657 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVM 435 + +D + IE RVLA I G+ +AF EDI+ +T + F +V+ R K + Sbjct: 658 LSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAV 717 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y + + + + F+++ + + + E Sbjct: 718 NFGIVYG-----ISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYV 772 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + R + + Sbjct: 773 ETIAHR---------RRYLPDIHASNFSVRSFAER------------------------- 798 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + +NT K+ +Q Sbjct: 799 ----------------------TAMNTPIQG---SAADIIKIAMINMQ-----------N 822 Query: 616 NATKN--GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 K ++L VHDE++ E PD + L +M +PLK E Sbjct: 823 ELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNN 880 Query: 673 Y 673 + Sbjct: 881 W 881 >gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] Length = 883 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + + + + D + + L + L D+ + + + ++ LG Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + + ++ + F ++ GK Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 ++K++ + L I +L + L + LF + ++ Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ S +N L + + +DG++ + TG Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + L Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 657 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 716 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ ++N Sbjct: 717 F--------------GIVYGISDYGLAKN------------------------------L 732 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + K + + Sbjct: 733 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 775 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR + D+ + + R + +Q + DI+ M Sbjct: 776 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 817 Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 818 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANW 875 Query: 670 AKRY 673 + Sbjct: 876 GHNW 879 >gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1] Length = 883 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 82/664 (12%), Positives = 184/664 (27%), Gaps = 139/664 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + + + + D + + L + L D+ + + + ++ LG Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + + ++ + F ++ GK Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 ++K++ + L I +L + L + LF + ++ Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ S +N L + + +DG++ + TG Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + L Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 657 SCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVN 716 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ ++N Sbjct: 717 F--------------GIVYGISDYGLAKN------------------------------L 732 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ + K + + Sbjct: 733 GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------- 775 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR + D+ + + R + +Q + DI+ M Sbjct: 776 ---------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIK 817 Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 818 MQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIADANW 875 Query: 670 AKRY 673 + Sbjct: 876 GHNW 879 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 95/662 (14%), Positives = 164/662 (24%), Gaps = 136/662 (20%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK 82 + A A A +L D H + + + Sbjct: 338 WALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKALHIAK---QVMRA 394 Query: 83 TL--GIDIPSKRWICTSVLARTNGLPS---SLKNACL-ALNFSEHLTKMEEGKALIARFC 136 G T++ A +L L S + ++ Sbjct: 395 FAERGWSFAGVT-ADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATAQAETGQLSFDA 453 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + L G + R E + D E + L + Sbjct: 454 DEPDPTAGAQALMTRARAVHDLAGLFDTRLAEV-----GAVELFHDMELPIAELLARMER 508 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD- 255 G D + + L+ A E ++ E+ + L+ LF G+ Sbjct: 509 HGIAADREWLRGLEAQFAAEIQRCVEEAHAAAGREF-NLGSPKQLQEILFGDLGLPKTKK 567 Query: 256 --MSEGTLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T L+ ++L + + L + VS GR+ T Sbjct: 568 IKTGYTTDADALTWLATQTTNELPVILLRHRDQAKLRTT-VEGLLKTVSPQGRIHTTFNQ 626 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P +R + Sbjct: 627 MVA-ATGRLSSQDPNLQNIP------------------------VRTEEGRAIRRAFVVG 661 Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L+ AD + IE R++A ++ ++ I+AF +GED++ T ++ F V E R Sbjct: 662 EGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVFAVAPADVDAEMRR 721 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K M + GL Sbjct: 722 KIKAM--------------SYGLAYGLS------------------------------AY 737 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + + + + GV ++ E V + Sbjct: 738 GLSQQLGIKPAEAQGLMDTYFERFGGVRDYLHNVVEEARAVGYTETLL------------ 785 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR D+ D ++ +Q + DI+ Sbjct: 786 --------------GRRRYLPDLTSDNRQRREMAERM---------ALNAPIQGSAADIV 822 Query: 611 CEGMKNATKNG------YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 M + ++L VHDEIV E V L M PL Sbjct: 823 KIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGAYPLRA--PL 880 Query: 664 KA 665 Sbjct: 881 DV 882 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 96/628 (15%), Positives = 172/628 (27%), Gaps = 133/628 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGL---PSSLK 110 L +L D + V H+S + G I T + A L Sbjct: 375 DALAGWLADVSRPKVLHDSK--PAVLAFAARGCAIQGIA-RDTQIAAYLARPDQRSYDLT 431 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + L E + G+ + + ++A D E + Sbjct: 432 DLALRYLHRELRV-DLPETGQLTLDGLGND----GEAEQNLMLRARATLDLADAIDAELS 486 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R+ + +++ E L + + G D + +L+ A E K + + Sbjct: 487 RDGEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVGR 546 Query: 231 IIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDL--ILNRLASS 285 + L+ LF G+ T L L +L + Sbjct: 547 EF-NLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLRHRDVA 605 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L ++VS DGR+ T A TGR S QN+P Sbjct: 606 KLKTT-VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP-------------- 649 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G L+ AD + IE R++A ++ ++ I AF + Sbjct: 650 ----------IRTEEGRRIRRAFVVGTGYECLLTADYSQIEMRIMAHLSADEALIDAFNS 699 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D + T + F P++ V+ +QR K M GL Sbjct: 700 GLDFHAATASSVFQVPVEAVTADQRRKIKAMNY--------------GLAYGLS------ 739 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + + A GV +++ Sbjct: 740 ------------------------AFGLSQQLGVTAEEARGLMETYFAGFGGVRDYLQEV 775 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + RR D+ D Sbjct: 776 VARARRDGYTESVL--------------------------GRRRYLPDLVSDNRQRREMA 809 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 ++ +Q + DI+ M N ++L VHDE+V E Sbjct: 810 ERM---------ALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAP 860 Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 ++ L M +PL+ Sbjct: 861 GEREALEALVRREMGGAFP--LSVPLEV 886 >gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 887 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 79/654 (12%), Positives = 175/654 (26%), Gaps = 127/654 (19%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89 +A + R + M + L T+ V F+ + LGI + Sbjct: 343 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQLG 397 Query: 90 SKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145 + +++ + L + +++ + GK + + + Sbjct: 398 KVDF-DLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 456 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + + E +L D E+ + + + G +D Sbjct: 457 LARK-----LAAIASLKPQLLKELAANEQDQLYD--DIEKPMANVLAQMEIAGITVDSSR 509 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + + + ++++ I + + L LF + ++ ++ T Sbjct: 510 LKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQLGHILFEEMKLPVIKKTKTGYSTAV 568 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL S + L +A+ S + T ++TGR S Sbjct: 569 DVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSS 628 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G ++ +D Sbjct: 629 VDPNLQNIP------------------------VRLEEGRKIRQAFVPSHEGWQIFSSDY 664 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440 + IE RVLA I ++ AF G+DI+ T + F+ ++V+ R K + + Sbjct: 665 SQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIV 724 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + + + + F+++ + + + + + + Sbjct: 725 YG-----ISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISH 779 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + + + Sbjct: 780 R---------RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADII--------------- 815 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 ++ ++ L M Sbjct: 816 ------KIAMIKMQDKLQAAG----------------------------LKATML----- 836 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P + L S+M A +PLK E + + Sbjct: 837 -----LQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHYGDTW 883 >gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 886 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 84/652 (12%), Positives = 174/652 (26%), Gaps = 119/652 (18%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L + D L R + L + L D V N+ + + + LG+D+ Sbjct: 339 LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGV 397 Query: 92 RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + + + GK + Sbjct: 398 NF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 456 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +A ++ + Y + L++ D ER L + + G +D + Sbjct: 457 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 509 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ + + +L++ I + + L + LF + ++ ++ T + Sbjct: 510 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 568 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L IL S + L + + D + T + TGR S Sbjct: 569 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 628 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R S G K+ +D + Sbjct: 629 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 664 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA + G+ F G+DI+ T + F+ D+V+ R K + + Y Sbjct: 665 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 724 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + S F+++ E + + + + + L Sbjct: 725 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 778 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + I + Sbjct: 779 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 815 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 R +G + + + Sbjct: 816 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 839 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P+ ++ L S+M +PLK E + Sbjct: 840 --------ELVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 881 >gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] Length = 877 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 90/629 (14%), Positives = 188/629 (29%), Gaps = 124/629 (19%) Query: 56 DLLQYLRDETVMCVAHN--SLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 +L+++L ++ HN +F+ + L I++ + + + +++ Sbjct: 358 ELIEWLEND------HNNKIVFDAKKTYVAAHRLEINLQHIDF-DVMLASYIIDPSRTIE 410 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + +++ K+ IA + KG P D H+ A CK + Sbjct: 411 DVQSVVSYYNQNF----VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDI 466 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ L++ E L + + + G D++ + ++Q + ++ L +I + G Sbjct: 467 LSDHNQMDLLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAA-G 525 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF + ++ ++ T +L D IL S Sbjct: 526 ESFNINSPKQLGIVLFETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKL 585 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + +S D R+ A +TGR S QN+P Sbjct: 586 QSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSIDPNLQNIP---------------- 628 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R S+ ++ AD + IE RVLA + ++ +AF +G+ Sbjct: 629 --------IRLEEGRKIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGD 680 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T K F D+V+ R K + + Y L + + Sbjct: 681 DIHAATAMKVFGVEKDQVNDLMRRQAKAVNFGIVYG-----ISDYGLSQNLGITRKKAKA 735 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + L+ R + +L Sbjct: 736 FIDDYLASFPGVKQYMTDIVKDAKANGYVETLLHR---------RRYIPDITSRNFNLRS 786 Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + SA + + + Sbjct: 787 FAERTAMNTPIQGSAADIIKLAMVQFD--------------------------------- 813 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 + +RE Y KL + DE++ E P + Sbjct: 814 KNVRETNYHAKL----------------LLQVH-----------DELIFEVPKSEVQDFS 846 Query: 646 T-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + A +PL + + Sbjct: 847 EFVEEIMDNALTLA--VPLLVDSSYGATW 873 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 85/515 (16%), Positives = 148/515 (28%), Gaps = 118/515 (22%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + L + D E L + + RG IDL+ + + + +E L +I L Sbjct: 434 ELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLAG 493 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASS 285 + R + + LF + + T +L IL Sbjct: 494 QEF-NLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLE 552 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L L + V RL A+ TGR S QN+P Sbjct: 553 KLRSTYLEPLPQKVDDTSRLHTHFNQL-ATATGRLSSSGPNLQNIP-------------- 597 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 G +R C +A G +LV AD + IE RVLA ++ + ++AF G Sbjct: 598 ----------IRGEFGPRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQG 647 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ T A + + V E R K + G+ Sbjct: 648 EDIHSRTAAVIMDIADEHVDSEARRQAKTIN--------------FGLLYGMGP------ 687 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + + + + + QGV ++ + Sbjct: 688 ------------------------QKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIE 723 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + + RR + D+ + L Sbjct: 724 DAAKQHGYVTT--------------------------WAGRRRLLPDINSRNANLAQQAR 757 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKN------ATKNGYDIVLTVHDEIVSETPDT 639 ++ +VQ + DI+ M G + L VHDE++ E P Sbjct: 758 RM---------AVNTVVQGSAADIIKMAMIEADGDTELADAGARLTLQVHDELLLEVPRE 808 Query: 640 PYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L ++M +PL + + Sbjct: 809 AAETAGKRLAAIMASVAD--MDVPLAVDWGVGTNW 841 >gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 882 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 79/654 (12%), Positives = 175/654 (26%), Gaps = 127/654 (19%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89 +A + R + M + L T+ V F+ + LGI + Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQLG 392 Query: 90 SKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145 + +++ + L + +++ + GK + + + Sbjct: 393 KVDF-DLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + + E +L D E+ + + + G +D Sbjct: 452 LARK-----LAAIASLKPQLLKELAANEQDQLYD--DIEKPMANVLAQMEIAGITVDSSR 504 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + + + ++++ I + + L LF + ++ ++ T Sbjct: 505 LKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQLGHILFEEMKLPVIKKTKTGYSTAV 563 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL S + L +A+ S + T ++TGR S Sbjct: 564 DVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTRYLQTLTQTGRLSS 623 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G ++ +D Sbjct: 624 VDPNLQNIP------------------------VRLEEGRKIRQAFVPSHEGWQIFSSDY 659 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440 + IE RVLA I ++ AF G+DI+ T + F+ ++V+ R K + + Sbjct: 660 SQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIV 719 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + + + + F+++ + + + + + + Sbjct: 720 YG-----ISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISH 774 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + + + Sbjct: 775 R---------RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADII--------------- 810 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 ++ ++ L M Sbjct: 811 ------KIAMIKMQDKLQAAG----------------------------LKATML----- 831 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P + L S+M A +PLK E + + Sbjct: 832 -----LQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHYGDTW 878 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 101/652 (15%), Positives = 178/652 (27%), Gaps = 145/652 (22%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 +D +L D + + L +L + H + + + GI + T Sbjct: 338 FDAIHAELADLSAEDD--KALAAWLESDA-EKFLHEAKAAYHMLQG-RGITLNGIA-HDT 392 Query: 97 SVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANH 152 ++ A L + E+ L S + Sbjct: 393 ALAAYLLRPGQRTYELPDVYQRHLRKTLEASSEQLSLLDDTGGIDSAVAIMELTVELTKA 452 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 +Q + Y + E L + + G +++D + QE+ Sbjct: 453 LQEIDSYQLYA------------------ELEIPLVSILAKMEATGIAVNVDTLESQQEV 494 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 A ++ +L + L+ LF + ++ T + Sbjct: 495 FANHVAAEEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLA 554 Query: 270 --ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 D +L L L + V DGR+ T AS TGR S Sbjct: 555 INHPHPFLDHLLAHREYQKLKTT-LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNL 612 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386 QN+P + +RS I G L+ AD + IE Sbjct: 613 QNIP------------------------VRTESGRTIRSAFIVGEGYETLLTADYSQIEM 648 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RV+A ++ + I+A+ GED++ ++ F+ P+DKV+ E R K M L Sbjct: 649 RVMAHLSQDPGLIEAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLV------ 702 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 GL SQ + + + Sbjct: 703 --------YGLSAFGLSQQLSIPAG------------------------------EAKKT 724 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 A+ + GV + D+ E R Sbjct: 725 MDAYFDRFGGVKKYLADVVEQARKDGYTATVF--------------------------GR 758 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GY 622 R ++ D + +Q + DI+ M + Sbjct: 759 RRYLPELISDNRLARENAERA---------ALNAPIQGTAADIIKVAMIRVDQALEGFKS 809 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V + M + S +PL+ + Sbjct: 810 RVLLQVHDELVVEVAPGELNKVQEIVEREMDASIS--LRVPLEVSAGTGDNW 859 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 106/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 + A D D T+ L +L D AH+ Sbjct: 338 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 395 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP-SSLK--NACLALNFSEHLTKMEEGKALIARFC 136 + G + T++ A S + + E + E ++ Sbjct: 396 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 453 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + V+A + D E R L++ E L + + Sbjct: 454 DEEQTKAGAAA--SELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEA 509 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G +D D + L A K+ +D + I + L++ LF G+ Sbjct: 510 AGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKR 568 Query: 257 SEG---TLKSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T L +L ++ ++ L ++++ DGR+ TL Sbjct: 569 TKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT-VDGLVKSIADDGRIHTTLNQ 627 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P +R + Sbjct: 628 TIA-ATGRLSSTEPNLQNIP------------------------IRTEEGRRIREVFVVG 662 Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G +L+ AD + IE R++A ++G++ I+AF GED++ ++AF PID+V E R Sbjct: 663 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 722 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K M + GL Sbjct: 723 RVKAM--------------SYGLAYGLS------------------------------AF 738 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A + ++ +A+ A+ V +D+ + + Sbjct: 739 GLAQQLRISTEDAREQMEAYFARFGSVRDYLRDVVDQARKDGYTSTIL------------ 786 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR D+ D ++ +Q + DI+ Sbjct: 787 --------------GRRRYLPDLNSDNRQRRDMAERM---------ALNAPIQGSAADII 823 Query: 611 CEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665 M + + ++L VHDE++ E D V L M +A +PL+ Sbjct: 824 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 881 Query: 666 EGYEAKRY 673 + Sbjct: 882 SVGVGGSW 889 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 190/701 (27%), Gaps = 170/701 (24%) Query: 6 IDIE--TRSPQP----------LPKVGVWAYAEQAVITLCAYAWDD-EPVKL---WDRTE 49 ID E T L +G + EQ + A+AW + E + + D Sbjct: 310 IDFEIVTDGSISEKVNADDFFYLETLGENYHREQ----IVAFAWGNAEKIYVSKNIDLLT 365 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLP 106 + P + ++ + L I++P ++ Sbjct: 366 KMKFPEN-----------------TYDFKKNRVLLSHLDIELPLVKF-DAM--------- 398 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + K+ L + + T+ LF ++ Sbjct: 399 -----LAKYLISTTEDNKISTIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKI 453 Query: 167 VEATRELFKRLIPLSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 K + L + E+ L + + G + + + ++ ++ Sbjct: 454 KVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKL 513 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 L +I L + L + LF + + ++ T +L Sbjct: 514 ASLTREIYDLAGEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPV 572 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL + + L ++ DG++ ++TGR S QN+P Sbjct: 573 VAKILEYRQINKVQSTYVKGLIPQIADDGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP--- 628 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + S L+ +D + IE RVLA I+G Sbjct: 629 ---------------------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISG 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ I AF +G DI+ +T + F + V+ R K + + Y Sbjct: 668 DEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYG-----ISDFGL 722 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + + FE + +++ + + + + + R K Sbjct: 723 ARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHR---------RRK 773 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + ++ Sbjct: 774 IPDINARNFNVRGFAERTAINSPI------------------------------------ 797 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +A L K +RD ++L VHDEI+ Sbjct: 798 ------QGSAADILKIAMINLDKAL------SARD-FK----------SKLLLQVHDEII 834 Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + P + L M + A +PLK + K + Sbjct: 835 LDVPLEELDEIKVLVKQTMEEAIELA--VPLKVDENTGKTW 873 >gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] Length = 885 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 87/661 (13%), Positives = 181/661 (27%), Gaps = 134/661 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83 A D E D + + L + L ++ V+ N F+ + Sbjct: 339 EFCGFAIGTDKELWVSDDV----ELLREPALSEILANQKVVV---NV-FDGKRTYVGLHR 390 Query: 84 LGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 LG+ + S + + + + L + + E A+ + Sbjct: 391 LGVTLNSINY-DILLQSYLLDTNDNSNDLGQLAHEHDIEDIK-TDAEVYGTGAKRAVPAK 448 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D V + +L+ ++ E L ++ + G + Sbjct: 449 DVLLEHLAHKIDVIGELGRRLQEELINNQQADLYWKI------ELPLSIVLAKMEISGIK 502 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + + +Q + + +L+ I + + L LF ++ ++ Sbjct: 503 VDRERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTG 561 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T ++L D IL+ + ++ L + + S + T ++T Sbjct: 562 YSTAVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S QN+P +R + G + Sbjct: 622 GRLSSTDPNLQNIP------------------------IRIEEGKKIRQAFVPSHEGWHI 657 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVM 435 + +D + IE RVLA I G+ +AF EDI+ +T + F +V+ R K + Sbjct: 658 LSSDYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAV 717 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y + + + + F+++ + + + E Sbjct: 718 NFGIVYG-----ISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYV 772 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + R + + Sbjct: 773 ETIAHR---------RRYLPDIHASNFSVRSFAER------------------------- 798 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + +NT K+ +Q Sbjct: 799 ----------------------TAMNTPIQG---SAADIIKIAMINMQ-----------N 822 Query: 616 NATKN--GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 K ++L VHDE++ E PD + L +M +PLK E Sbjct: 823 ELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVMDSAIK--LDVPLKVETSWGNN 880 Query: 673 Y 673 + Sbjct: 881 W 881 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 86/606 (14%), Positives = 161/606 (26%), Gaps = 141/606 (23%) Query: 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 L ++ S+ A + + L GK + + Sbjct: 386 YHLWEELLEGEIHDLSLGAYLLNPLKDSYAYDDLARDY---MDLV--LPGKKELQNTAEE 440 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDR 197 + +WQ + + EL++ D E L + + Sbjct: 441 G---------LYSAFVSWQAKNRIFQELKDTEQWELYR------DVEEPLVPVLYRMEKA 485 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D + +L E + + L E+I + + L LF + + Sbjct: 486 GILVDKEALLSYGEELKKNIAMLQEEIYAMAGEEF-NINSPQQLGGILFEKMQLPGGKKT 544 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L IL S LS V D R+ G+ Q Sbjct: 545 KTGYSTAVDVLEKLQEDYPIVGKILEYRTYSKLNSTYAEGLSNYVGEDQRIHGSFQQMV- 603 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P RS I G Sbjct: 604 TATGRLSSTEPNLQNIP------------------------IRTEMGRVFRSVFIPKEGS 639 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 + AD + +E R+LA ++ ++ I+A+ DI+ T ++ F+ P+++V+ E R K Sbjct: 640 VFLDADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKA 699 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + G+ + Sbjct: 700 VNF--------------GIVYGIS------------------------------AFGLSE 715 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + + + V + Sbjct: 716 GLSISRQEAKEYIERYFTSYPKVKEYLDGEVAFARE------------------------ 751 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 + RR ++ + + R +Q + DI+ + M Sbjct: 752 --HSFVKTLFGRRRPLPEIHASNFMRRSFS---ERVAMNAP------IQGTAADIIKKAM 800 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + IVL +HDE++ E +V + S M S +PL E Sbjct: 801 VIVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDILVSAMEHVVSLP--VPLIVEA 858 Query: 668 YEAKRY 673 + Sbjct: 859 TVGNNW 864 >gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 916 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 84/652 (12%), Positives = 174/652 (26%), Gaps = 119/652 (18%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L + D L R + L + L D V N+ + + + LG+D+ Sbjct: 369 LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR-LGVDLAGV 427 Query: 92 RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + + + GK + Sbjct: 428 NF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 486 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +A ++ + Y + L++ D ER L + + G +D + Sbjct: 487 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 539 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ + + +L++ I + + L + LF + ++ ++ T + Sbjct: 540 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 598 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L IL S + L + + D + T + TGR S Sbjct: 599 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 658 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R S G K+ +D + Sbjct: 659 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 694 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA + G+ F G+DI+ T + F+ D+V+ R K + + Y Sbjct: 695 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 754 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + S F+++ E + + + + + L Sbjct: 755 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 808 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + I + Sbjct: 809 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 845 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 R +G + + + Sbjct: 846 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 869 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P+ ++ L S+M +PLK E + Sbjct: 870 --------ELVFEAPEEEIATLEELVPSIMDSAVK--LDVPLKVESKSGATW 911 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 106/668 (15%), Positives = 192/668 (28%), Gaps = 133/668 (19%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 + A D D T+ L +L D AH+ Sbjct: 339 WSRGSGDLDGLALVTADGAGAFVDARTLTDDDE--RALSAWLADPAFPKAAHDVKGPLHA 396 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP-SSLK--NACLALNFSEHLTKMEEGKALIARFC 136 + G + T++ A S + + E + E ++ Sbjct: 397 V-RDRGWKLAGLS-SDTALAAYLVRPGQRSFDLPDLVVRYLQRELRAEQGEDDGQLSLLE 454 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + V+A + D E R L++ E L + + Sbjct: 455 DEEQTKAGAAA--SELVRARAVAELADTLDDELARI--DSTRLLTELELPLLQVLSELEA 510 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G +D D + L A K+ +D + I + L++ LF G+ Sbjct: 511 AGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDELGMPKTKR 569 Query: 257 SEG---TLKSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T L +L ++ ++ L ++++ DGR+ TL Sbjct: 570 TKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT-VDGLVKSIADDGRIHTTLNQ 628 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P +R + Sbjct: 629 TIA-ATGRLSSTEPNLQNIP------------------------IRTEEGRRIREVFVVG 663 Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G +L+ AD + IE R++A ++G++ I+AF GED++ ++AF PID+V E R Sbjct: 664 EGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGVPIDEVDHELRR 723 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K M + GL Sbjct: 724 RVKAM--------------SYGLAYGLS------------------------------AF 739 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A + ++ +A+ A+ V +D+ + + Sbjct: 740 GLAQQLRISTEDAREQMEAYFARFGSVRDYLRDVVDQARKDGYTSTIL------------ 787 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR D+ D ++ +Q + DI+ Sbjct: 788 --------------GRRRYLPDLNSDNRQRRDMAERM---------ALNAPIQGSAADII 824 Query: 611 CEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKA 665 M + + ++L VHDE++ E D V L M +A +PL+ Sbjct: 825 KVAMLDVHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA--YALDVPLEV 882 Query: 666 EGYEAKRY 673 + Sbjct: 883 SVGVGGSW 890 >gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] Length = 882 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 79/654 (12%), Positives = 175/654 (26%), Gaps = 127/654 (19%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89 +A + R + M + L T+ V F+ + LGI + Sbjct: 338 GFAIGADDHWYISRDVELLMQPTVADLLSSTTITKDV-----FDMKRTTVGLNRLGIQLG 392 Query: 90 SKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEE-GKALIARFCKGSIDSPPY 145 + +++ + L + +++ + GK + + + Sbjct: 393 KVDF-DLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGKGVKRAIPEDDDVFFSH 451 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + + E +L D E+ + + + G +D Sbjct: 452 LARK-----LAAIASLKPQLLKELAANEQDQLYD--DIEKPMANVLAQMEIAGITVDSSR 504 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + + + ++++ I + + L LF + ++ ++ T Sbjct: 505 LKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQLGHILFEEMKLPVIKKTKTGYSTAV 563 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL S + L +A+ S + T ++TGR S Sbjct: 564 DVLEKLAPEAPIVANILQYRQISKIQSTYVVGLLDAIHSADQKVHTRYLQTLTQTGRLSS 623 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G ++ +D Sbjct: 624 VDPNLQNIP------------------------VRLEEGRKIRQAFVPSHEGWQIFSSDY 659 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440 + IE RVLA I ++ AF G+DI+ T + F+ ++V+ R K + + Sbjct: 660 SQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIV 719 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + + + + F+++ + + + + + + Sbjct: 720 YG-----ISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISH 774 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 R + + + Sbjct: 775 R---------RRYLPDINSKSFNQRSFAERTAMNTPIQGSAADII--------------- 810 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 ++ ++ L M Sbjct: 811 ------KIAMIKMQDKLQAAG----------------------------LKATML----- 831 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE++ E P + L S+M A +PLK E + + Sbjct: 832 -----LQVHDELIFEAPKEEIPVLEKLVPSVMDSAVQLA--VPLKVESHYGDTW 878 >gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] Length = 883 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 83/663 (12%), Positives = 183/663 (27%), Gaps = 137/663 (20%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + ++ LGI Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLKRNYVGLQR-LGI 392 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDS 142 + + + + ++ + F ++ GK Sbjct: 393 TLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDTL 450 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 451 YAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQ 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++K++ + L I +L + L + LF + ++ Sbjct: 504 ATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYS 562 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L IL+ S +N L + + +DG++ + TGR Sbjct: 563 TSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGR 621 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + L Sbjct: 622 LSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLFS 657 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437 D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 658 CDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF 717 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ ++N Sbjct: 718 --------------GIVYGISDYGLAKN------------------------------LG 733 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + ++ + K + + Sbjct: 734 ISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH------------------ 775 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR + D+ + + R + +Q + DI+ M Sbjct: 776 --------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKM 818 Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L +HDE++ + P + L +M + +PL A+ Sbjct: 819 QSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLIADANWG 876 Query: 671 KRY 673 + Sbjct: 877 HNW 879 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 85/596 (14%), Positives = 165/596 (27%), Gaps = 139/596 (23%) Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 R S++A + N+ IA Sbjct: 412 VARIHDVSLMAYLLDPTRT--------NYGYLYLTERFSVPSIATGSVDVECVSMVKALL 463 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A A + + D+ ++ E L + G ID + + Sbjct: 464 AMDDAAVKALQDESLWDL------------YNNIELPLIHTLLVMEKNGIYIDPVKLEET 511 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 E + + ++I +L G + L + LF + ++ ++ T +L Sbjct: 512 TIKFKAELEAVQQEIYELA-GETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLD 570 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + IL + + L+ ++ R+ T + TGR S Sbjct: 571 MLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMV-TATGRLSSSDP 629 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384 QN+P +R+ G LV AD + I Sbjct: 630 NLQNIP------------------------VRTEKGREIRALFYPGEGFDTLVSADYSQI 665 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA ++G++ IKAF +G+DI+ T A+ D+V+ E+R+ K + + Y Sbjct: 666 ELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYG-- 723 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + Sbjct: 724 ---ISDFGLSRDL---------------------------------------GITRQEAK 741 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + +++ V + ++ + R Sbjct: 742 NYIELYFSRYPKVKEYMDNMVIEAHETGKVRTMFGRMRELPDINSRNFNR---------- 791 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TK 619 + + +NT +Q + DI+ M K Sbjct: 792 -------RSFAERTAMNT------------------PIQGTAADIIKLAMNKVESILEEK 826 Query: 620 N-GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + ++ T L M +PL + + A+ + Sbjct: 827 AFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880 >gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] Length = 873 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 97/661 (14%), Positives = 191/661 (28%), Gaps = 141/661 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--KKTLGID 87 I A +++ D + ++ DE++ ++ K G++ Sbjct: 333 IVGFAI-YNNSEAYYIDIENAIKC-QNFQNFINDESIEKYGYDIK---KCINAAKWHGLE 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLT-KMEEGKALIARFCKGSIDS 142 I + + SLK+ C ++ + L + GK + Sbjct: 388 IK-NYVFDLQLASYILNP--SLKDEIRSVCEYYDYYDVLYDEEVYGKG--------AKKK 436 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P A+H+ K + + D E + + ++ +G +ID Sbjct: 437 IPETTAIADHLIKQAKAIYVLKDKAIEKLKQENQFDLYKDVEMPVAKILASMEYQGAKID 496 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 D++ L+ +E + L+++I +L + + L LF G+ ++ Sbjct: 497 KDVLKDLENQFGKEIEVLEKEIHQLAN-KNFNIASPKQLGEVLFEDLGLPNGKKTKTGYS 555 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T IL+ + +L S + L E + DG++ ++TGR Sbjct: 556 TSVDILNKLKDVHPIINKVLQYRTLSKLYSTYIIGLQEQIFVDGKIHTIYNQA-LTQTGR 614 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +R I LV Sbjct: 615 LSSTDPNLQNIP------------------------VKTAEGKLIRKAFIPEYDY-LVSF 649 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA +A IKAF +DI+ T ++ F D+V R K + Sbjct: 650 DYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNF-- 707 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ ++ V + Sbjct: 708 ------------GIIYGMSDFGLAEQV------------------------------GVP 725 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 K + + + + E ++ +R Sbjct: 726 VNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNRKR----------------- 768 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-- 617 + + +Y+ + + + +Q + DI+ M Sbjct: 769 ----------FIREINEKNYMRQELGKRL--------AMNSPIQGSAADIIKVAMIKVDE 810 Query: 618 ----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ + V + + MT + LK+EG A Sbjct: 811 LFKKHNLKSKMILQVHDELIFDVYKEELEEVMEVVAKGMTTAVK--MNVELKSEGSYAIN 868 Query: 673 Y 673 + Sbjct: 869 W 869 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 95/626 (15%), Positives = 170/626 (27%), Gaps = 136/626 (21%) Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHL 122 V H++ + G + T++ A L + + E Sbjct: 398 RPKVLHDAKGPILALA-ARGWTLRGLA-SDTALAAYLVLPGQRSFDLADLAVRYLRRELR 455 Query: 123 TKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + G ++ G + A V D E RL+ Sbjct: 456 AEAGSAGDGQLSFEMAGDEATAAAAGVHARAVLDLAEV-----LDAEVAARGGARLLR-- 508 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D+D ++ L +A K E G + L Sbjct: 509 DVELPLIDVLAAMERAGIAVDVDTLVDLSAELAAHV-KATEQAAYQVVGREFNLGSPKQL 567 Query: 242 RMYLFLITGIDLVD---MSEGTLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTL 295 + LF + T L + L + L+ +R S A +++L Sbjct: 568 QQILFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLRHRDVSRLKAT--VDSL 625 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V ++GR+ T A TGR S QN+P Sbjct: 626 IPMVDAEGRIHTTFNQMVA-ATGRLSSQDPNLQNIP------------------------ 660 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE R++A ++ + I+AF +G D + T A Sbjct: 661 IRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRSGFDFHAATAA 720 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F ++V E R K M GL Sbjct: 721 SVFGVRPEQVDAEMRRRVKAMNY--------------GLAYGLS---------------- 750 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + ++ + + + GV + + E Sbjct: 751 --------------AYGLSQQLGITPDEARVLMEEYFRRFGGVRDYLRTVVERARRDGYT 796 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 + RR D+ D ++ Sbjct: 797 ETLL--------------------------GRRRYLPDLTSDNRQRREMAERM------- 823 Query: 595 GKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + ++L VHDE+V E V + Sbjct: 824 --ALNAPIQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEIV 881 Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ + + Sbjct: 882 RREMGHAYE--LSVPLEVSVGVGRTW 905 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 96/684 (14%), Positives = 176/684 (25%), Gaps = 150/684 (21%) Query: 15 PLPKVGVWAYA-EQAVITLCAYAWDDEP-VKLWDRTEQSAMPSDLLQYLRDETVMCVAHN 72 PL V +A ++ A A P V ++ D V H+ Sbjct: 349 PLGLATVDTWALGSGSVSQIALAAASGPAVCFDPSAVDEPDERAFADWIADPERPKVMHD 408 Query: 73 SL-----FERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSEHLT 123 + F+ G + T++ A +L L Sbjct: 409 AKRVMRVFDEQ------GWAVAGAAM-DTALAAYLVKPGRRSFALDALSVEYLGRELSPA 461 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E +A + + + FG L D Sbjct: 462 AAAES-GQLAFGADEQAEQDALMIQARTILDLGEAFGRRLAEVGAVEL--------LRDV 512 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E + L + G D D + ++ + A ++ ++ + L+ Sbjct: 513 ELPISALLARMEKAGIAADRDWLDRMDQRFAGAVQQAVKEAHDAVGHEF-NLGSPKQLQE 571 Query: 244 YLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSE 297 F G+ T L+ +L ++ +R + + + L + Sbjct: 572 VFFGELGLPKTKKIKTGYTTDADALAWLATQTDHELPVIMLRHREQARLRST--VEGLIK 629 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 A++ GR+ T A TGR S QN+ Sbjct: 630 AIAPGGRIHTTFNQTVA-ATGRLSSTDPNLQNV------------------------HVR 664 Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T ++ Sbjct: 665 TEEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQV 724 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F +V E R K M + GL Sbjct: 725 FGVAKSEVDPEMRRKIKAM--------------SYGLAYGLS------------------ 752 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + + + GV + + + Sbjct: 753 ------------AFGLSQQLGITPDEARKLMDTFFERFGGVRDYLQRVVDEARATGYTET 800 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + RR D+ D ++ Sbjct: 801 ML--------------------------GRRRYLPDLNSDNRQRREMAERM--------- 825 Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +Q + DI+ M + ++L VHDEIV E V L Sbjct: 826 ALNAPIQGTAADIVKIAMLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRR 885 Query: 651 -MTKNPSWAKGLPLKAEGYEAKRY 673 M PL + Sbjct: 886 EMAGAFHLRA--PLDVSVGAGTDW 907 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 102/657 (15%), Positives = 182/657 (27%), Gaps = 137/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A L D + SA L +L E + H + + G ++ Sbjct: 340 LAIADTKRHAVLVDVADISAEDEKALATWLASED-PKMLHGAKAAYHMLAG-RGFELHGV 397 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A + L + A+ Sbjct: 398 -VHDTAIAAYLLRPGQRTYELADVYQ-----------RHLQRQLSTNDNGGQLTLLDAAD 445 Query: 152 HVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + E T++L + D E L + + G +D+ + + Sbjct: 446 DQSLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQ 505 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSI 264 + + + +E +L + + L++ LF G+ ++ + Sbjct: 506 LKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIE 565 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 D +L L L V+ DGR+ T AS TGR S Sbjct: 566 ALAIKNPHPFLDHLLAHRQYQKMKTT-LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTD 623 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P A +RS + G L+ AD + Sbjct: 624 PNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADYSQ 659 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RV+A ++ + I+A+ GED++ +K FN PID V+ E R K M Sbjct: 660 IEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYG----- 714 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL SQ + + Sbjct: 715 ---------LVYGLSAFGLSQQLSIPAG------------------------------EA 735 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + +++ + GV + +++ E Sbjct: 736 KQIMESYFERFGGVQRYLREIVEEARKAGYTETLF------------------------- 770 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RR ++ D A R +Q + DI+ M ++ Sbjct: 771 -GRRRYLPELTSDN---RVARENAERAA------LNAPIQGTAADIIKVAMIRVDRSLKE 820 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E V + M +PL+ + + Sbjct: 821 AAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNAIK--LSVPLEVSAGDGVNW 875 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 82/607 (13%), Positives = 154/607 (25%), Gaps = 145/607 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ + ++A ++ + Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193 A + + L ++L + ER L + Sbjct: 400 ----------------FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAH 443 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG R+D+ L+ L + +E ++L+ ++ +L + L LF G+ Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502 Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + L +LIL S L+ L V GRL Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A+ TGR S QN+P +R Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G L+ AD + IE RVLA ++G++ + F G+DI+ T A F V + Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPK 657 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y A L + F+ + + + + Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G R + + + E + Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + L Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + +VL E P+ L +M +PL+ E Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820 Query: 667 GYEAKRY 673 + + Sbjct: 821 VGVGRDW 827 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 102/631 (16%), Positives = 182/631 (28%), Gaps = 136/631 (21%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 +L D AH+ + LG+ + T++ A L + Sbjct: 368 WLADAHQPKAAHDVKGPMLALA-ELGLTLAGVT-SDTALAAYLALPGQRSFDLADLVARY 425 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + G + S + + A+ V+A + D + R Sbjct: 426 LHRDLAVE-PAGNGQLTLDG-----SGEAEESHADAVRARACLELADELDADLERRSAAV 479 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L+ D E L + + G D D + +LQ+ E + ++ G + Sbjct: 480 LLR--DMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIV-GRTFNLG 536 Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---ITQLAKDLILNRLASSGSAIL 290 L+ LF G+ T L+ L L+ +R + Sbjct: 537 SPKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLK--T 594 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 +++L + GR+ T A TGR S QN+P Sbjct: 595 VVDSLLPMIDDAGRIHTTFNQMIA-ATGRLSSTDPNLQNIP------------------- 634 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 635 -----IRTAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLH 689 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 A+AF P+ +V E R K M + GL Sbjct: 690 TFVAAEAFGLPVSEVDPELRRRIKAM--------------SYGLAYGLS----------- 724 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A + + A+ + GV + + E Sbjct: 725 -------------------AFGLASQLGIAPDEAREHMDAYFGRFGGVRDFLRGVVERAR 765 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ D + ++ Sbjct: 766 RDGYTETML--------------------------GRRRYLPDLTSDNAQRRQMAERM-- 797 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+V E Y + Sbjct: 798 -------ALNAPIQGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDA 850 Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V L MT + +PL + + Sbjct: 851 VEALVRAEMTSA--YTMSVPLDVSVGAGRTW 879 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 81/521 (15%), Positives = 157/521 (30%), Gaps = 117/521 (22%) Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +++ E + L ++ E L + ++ G R D D + + + + ++ + L Sbjct: 439 LAENLKLRLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTS 498 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLIL 279 I L G + L LF G+ ++ T +L L+L Sbjct: 499 QIYDLAGGEF-NIASPKQLGEVLFEKLGLPAKKKTKSGYSTNAEVLEELADKHPIVGLVL 557 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + +++L + V +DGR+R + +RTGR S QN+P Sbjct: 558 EYRTLTKLNSTYVDSLLKEVEADGRVRSVFKQTE-TRTGRISSTEPNMQNIP-------- 608 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G + AD + IE RVLA + G++ Sbjct: 609 ----------------VRKEIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMR 652 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 K FA+G DI+ T ++ F P D V E R+ K + + G+ Sbjct: 653 KTFADGTDIHTMTASQVFGIPADAVLPEMRSAAKAVNFGII--------------YGIG- 697 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + K + V + Sbjct: 698 -----------------------------AFSLSKDIGVSVKEAKQYIKNYLDNFPKVSE 728 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + ++ G + RR ++ Sbjct: 729 FM---DKTVEDGIKNGYVTTI-----------------------FGRRRYIPELAATNKV 762 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 + + +Q + DI+ M K ++L VHDE++ Sbjct: 763 MQAFGKRA---------AMNAPIQGAAADIIKMAMVKVYKRLKAEKLDARLILQVHDELI 813 Query: 634 SETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 E + M K ++ +P++ E + + Sbjct: 814 IEVTPDDKEKAKAILKEEMEKAVNFT--VPMEVSVGEGESW 852 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 86/606 (14%), Positives = 159/606 (26%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 77 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 117 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 118 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 166 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G R+D+ + L +A+E +L+ ++ +L + L LF G+ + Sbjct: 167 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 225 Query: 255 DMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 +E T ++L + IL + ++ L + + GRL Sbjct: 226 GKTENTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 285 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 286 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 320 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 321 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 380 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 381 RRTAKTINYGVLYGMSAHHLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 435 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 436 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 482 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 483 -----------------MKLAMVKLLPRLEEMG--------------------------- 498 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +VL E P +V L +M A +PL+ E Sbjct: 499 --ARMLLQVHDE---LVL--------EAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 543 Query: 668 YEAKRY 673 + + Sbjct: 544 GIGEDW 549 >gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] Length = 879 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 93/685 (13%), Positives = 189/685 (27%), Gaps = 143/685 (20%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 ID T S + + Y + + + + ++ + +++YL+ E Sbjct: 317 IDF-TDSALHV-ECYTEDY-HNSDVVGIVV-YREGDAYIFSEEQF-FTNEFVVEYLQSEF 371 Query: 66 VMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLALNFS 119 V V ++ + K G++I + +++ + + K L Sbjct: 372 VKTV-----YDFKKILFIAKRNGVNINGE-VFDVKIVSYLIDVNAKTEIDKIVFNYLGKI 425 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + GK + A ++ L + E L Sbjct: 426 IKSDEEIYGKGAKR----TLPSQDVINPYIAEVAESIALMKPLMEEK--LAEENMTDLYK 479 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D E + + + G + + ++ + K L+ I L + Sbjct: 480 --DIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGSEF-NIASPK 536 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF G+ + ++ T +L + LI+ + L Sbjct: 537 QLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLV 596 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + ++ +G++ + A +TGR S QN+P Sbjct: 597 KDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIP------------------------T 631 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S + ++ D + IE RVLA IA + I AF + DI+ T + Sbjct: 632 RIEEGKKIRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASD 691 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 +D+V+ R K + + Y L Sbjct: 692 VNGVSLDQVTSSMRREAKAVNFGIVYG-----ISDFGLSNNL------------------ 728 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + +GV + D+ E Sbjct: 729 ---------------------GITRKRAKEFIDKYLETFKGVDKYMTDIVEFAKEHGYVE 767 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + RR D+ + Sbjct: 768 TLFN--------------------------RRRALPDINAKN---------KIVANLNAR 792 Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLC 648 + +Q + DI+ M N TK ++L VHDE++ + + Sbjct: 793 IAMNSPIQGTAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTKEMI 852 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673 +M + + + LKAE + Sbjct: 853 KIMEEAAN--LDVQLKAEASSGASW 875 >gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 368 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 178/415 (42%), Gaps = 66/415 (15%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 RL S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ Sbjct: 1 EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDT 59 Query: 339 ILTQTIQALNRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 L + P L S VR+ A G +L V+D + IEARV+AW Sbjct: 60 ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW 119 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR--AIGKVMELALGYQGGAKVFK 449 A E W++ F IY + ++ FN P++ ++K GKV ELALGYQGGA K Sbjct: 120 YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK 179 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M A++ + + + + Sbjct: 180 AMG----------------------------------------ALEMGIEENELQGLVDS 199 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR + ++ WK E ++ +R+ + L K + I LPS R L Sbjct: 200 WRNANPNIVNFWKACQEAAIN------TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALA 253 Query: 570 YSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 Y + + + + +TYGGKL ENIVQA +RD+L + Sbjct: 254 YPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAL 313 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 314 GFKIVGHVHDEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 107/648 (16%), Positives = 183/648 (28%), Gaps = 148/648 (22%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN-----SLFERILFKKTLGIDIP 89 YA D V L + +LL+ L + V N + G Sbjct: 345 YAVQDTTVYLLEDA-------ELLRLLDNADVTLDVFNSAPLYAK------AMAAGGWGS 391 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 S W + A +S K I+ + + CT Sbjct: 392 SIVW-DGKLAAYLLDASAS--------------------KYQISELIPAYKAAAAFTCTD 430 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A +L + + E T L + E L + + G +D D + + Sbjct: 431 Y--PDAGRLADLFARMKAEITACGEDALYN--EIEFPLAQVLADMTRTGVLVDKDGIEQF 486 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILS 266 + +E +++ I T + L LF G+ + T L Sbjct: 487 GVKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLE 546 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 L +D++ R A + L + + DGR+ T A RTGR S Sbjct: 547 SLREYPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ +A G LV AD + IE Sbjct: 605 LQNIP------------------------IRTELGSQLRAYFVAKPGCVLVDADYSQIEL 640 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA I G++ +AF NGEDI+ +T AK + P +V+ R+ K + + Y G Sbjct: 641 RILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKG-- 698 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + + + + + L G Sbjct: 699 ---AYSLSKDIGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGR----- 750 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 R + ++ + + Sbjct: 751 ----RRTLPELASTNFNVRASGERMARNTPIQGTAADVI--------------------- 785 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +L V R R K+ ++ L Sbjct: 786 KLAMVRV-------------WKRLR--DEKMASRLI-----------------------L 807 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 TVHDE++ E P+ + M +A +PL + + K + Sbjct: 808 TVHDELIVEAPEVEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 108/667 (16%), Positives = 188/667 (28%), Gaps = 140/667 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGI 86 +T A A D + L +L D H + + Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADADQPKALHEAK-----WAMHA-- 414 Query: 87 DIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCK 137 + + W+ T++ A +L + L E + G+ ++ Sbjct: 415 -LRGRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEE-TGEEQLSLL-- 470 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 D+ D A ++ + + LS+ E L + I Sbjct: 471 --DDADQVDAEAAETEILSARAVLDLAAALDTELDNIESTALLSEMELPLLEVLADIEAS 528 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM- 256 G +D + LQ A E E G + L++ LF + Sbjct: 529 GIAVDGTHLHDLQSRFAAEVSAAAEAAY-GVIGKQINLGSPKQLQVVLFDELEMPKTKKT 587 Query: 257 ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 L+++ ++ L +L ++ + ++ L + V+ DGR+ T Sbjct: 588 KTGYTTDAEALQNLFEKTSHPFLEH--LLAHRDATRLKVT-VDGLLKTVAEDGRIHTTFN 644 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P A +R + Sbjct: 645 QTVA-ATGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVV 679 Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G L+ AD + IE R++A ++G++ I+AF GED++ A+AF PI++V+ E R Sbjct: 680 GEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELR 739 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K M L Y L + + + F + + + +Q Sbjct: 740 RRVKAMSYGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQA 794 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + L G R + + E Sbjct: 795 RKDGYTSTLYGR---------RRYLPDLTSDNRQRREVAERA------------------ 827 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 LN K+ VQ RD Sbjct: 828 -----------------------------ALNAPIQG---TAADIIKVAMINVQRSLRD- 854 Query: 610 LCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666 G ++L VHDE+V E D+ V L M+ +PL Sbjct: 855 ----------AGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSAIE--LSVPLDVS 902 Query: 667 GYEAKRY 673 + + Sbjct: 903 VGTGRSW 909 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 78/549 (14%), Positives = 142/549 (25%), Gaps = 125/549 (22%) Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + GK I + + A + + E + Sbjct: 535 EPVREEQTAGKVSIRTALNPAEQCICHMAYTAWKSRERLMKKLEELDMKELFYTI----- 589 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E L + G + + + E + + ++L+++I G + Sbjct: 590 -----EMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIY-GETGEHFNINSP 643 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ T +L IL+ + + L Sbjct: 644 KQLGEILFGKMELPYGKKTKTGYSTAADVLEKLAPEYPVVQKILDYRQLTKLKSTYADGL 703 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + DGR+ GT + TGR S QN+P Sbjct: 704 AGYIREDGRIHGTFNQT-ITATGRLSSTEPNLQNIP------------------------ 738 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G V AD + IE RVLA ++G++ I+A+ EDI+ T ++ Sbjct: 739 VRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAITASE 798 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F+ P+++V+ QR K + G+ Sbjct: 799 VFHVPLEEVTPLQRRNAKAVNF--------------GIVYGIS----------------- 827 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + + V + L E Sbjct: 828 -------------AFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVT 874 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 RR + G+ + Sbjct: 875 TMFKRRRPVPELSS-----------------KNFMQRSFGERVAM--------------- 902 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC- 648 + +Q + DI+ M IVL VHDE++ E V T+ Sbjct: 903 ---NSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIEAKKEELKRVQTILS 959 Query: 649 SLMTKNPSW 657 M Sbjct: 960 EEMKHAADL 968 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 76/598 (12%), Positives = 158/598 (26%), Gaps = 137/598 (22%) Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 D+ + + A + + + Sbjct: 403 DVRHADYFDIGLAAYLLNS-------------NTDVFAYDALADTYLASSLPETKDDDAA 449 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 V + D + + +++ ++ + L + G ++D+D + Sbjct: 450 AAVHVLVAPRLVNALREALDKDGSADVYYKI------DLPLVSTLTLMERVGAQLDVDAL 503 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKS 263 + E L I +L + L + LF G+ + T + Sbjct: 504 AAMGSATRGEIDSLRAHIHELAGEEF-NVDSPKQLGVILFDKLGLPHGKKTRTGYSTNAA 562 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L D +L + + ++ L + DGR+ + TGR S Sbjct: 563 TLKKLQSIHPIADEVLRYRELAKMSSTYIDALPRMRADDGRVHTHFNQTV-TTTGRLSSS 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R C + G V AD + Sbjct: 622 DPNLQNIP------------------------VRTDFGRRIRECFVPLHEGDVFVSADYS 657 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA ++G++ + AF +G D + T A+ F+ P+D+V+ + R+ Sbjct: 658 QIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVDEVTPQLRSRA---------- 707 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 +A + + Q A + Sbjct: 708 ----------------------------------KAVNFGIVYGQQAFGLAQSLDIGFKE 733 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + GV E +R + Sbjct: 734 AQDMIDRYFEAYPGVRSYLDKTVEDAKQTGYAVTMFGRKRHIPELK-------------- 779 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 R G+ + + + +Q + DI+ M + Sbjct: 780 ---MRNAVQRGFGERTAM------------------NHPMQGSAADIIKLAMNEVQRRLI 818 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+ P + + +M+ +PL + + Sbjct: 819 EDGFESQLMLQVHDELDLSVPADELERLSDMVREVMSTIVE--LKVPLLVDVSSGPNW 874 >gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1] gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 524 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 204/477 (42%), Gaps = 82/477 (17%) Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + + L +L G++ +++ ++ +L+ +I A+ + R ++ ++ KL Sbjct: 94 ATKAADLTTWLRD-QGVETEGVAKAAVRQMLA-GDIEGAARQAVEIRAEAAKASTAKLTA 151 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET-- 352 + + DGR RG YGA TGRW+G + Q QNLPR + L + + Sbjct: 152 MVKCACDDGRARGLHLVYGAG-TGRWAGRLIQLQNLPRGVIKKADLAIPLIIDGDIDLVS 210 Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 PL + S +R C+I + G + +D + IE R+ AW+A E+WKI+AF + + Sbjct: 211 MLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTG 270 Query: 411 TTYAKA------------FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + P+++ S E+ GKV ELALG+ GG F++MA+ G Sbjct: 271 RDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAIYG-- 328 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 K+ + +K AWR H V+ Sbjct: 329 -------------------------------------MKVTDEEADQIKVAWREAHPRVV 351 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 LW+++ + + G + + R+ + +VLPS R L Y+ + + Sbjct: 352 ALWRNMEDAAFNAISNPGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKR 408 Query: 579 --------------------YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +N+ T + R TYGG L EN +QAI+RD+L + Sbjct: 409 RPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLE 468 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY +V+ VHDE ++E SV S+M P+WA GLP+ A G+ RYRK Sbjct: 469 AAGYPVVIHVHDEALAEVRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 524 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 260 bits (664), Expect = 7e-67, Method: Composition-based stats. Identities = 84/535 (15%), Positives = 157/535 (29%), Gaps = 126/535 (23%) Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 ++ ++ ++D A L++ L E L + + RG ID Sbjct: 496 ALRMVEVLEARMRQDGLAE--LYESL------ELPLTPILADMERRGIAIDAAAFESFLS 547 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 + L + + + R L LF + ++ T + L Sbjct: 548 DVQGRLDTLTAAVYEAAGREF-NIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEK 606 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 D +L L+ L + +GR+ T A+ TGR S Sbjct: 607 LAGRHPVVDSVLEFRKLEKMRSTYLDPLPRLMDGNGRIHTTFNQ-KATATGRLSSSNPNL 665 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P G +R+C IA+ G LV AD + +E R Sbjct: 666 QNIP------------------------VRGDLGKRMRTCFIANPGSALVSADYSQVELR 701 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA ++ + ++AF NGEDI+ T A ++ D+VS +QR K + Sbjct: 702 VLAHMSQDKALLEAFRNGEDIHARTAALVYDLAPDQVSPDQRRNAKTINF---------- 751 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ + K+ + + Sbjct: 752 ----GLIYGMG------------------------------AQKLGQDLKISTSEAKEFI 777 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + ++ G+ + + + RR Sbjct: 778 ARYFSRLTGLKEFYDSVEATAKRQGYVTTLG--------------------------GRR 811 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNG 621 + D+ + ++Q + DI+ M ++ Sbjct: 812 RLLPDIHSPNGQAYALARRQ---------AINTVIQGSAADIIKLAMLAVAEDEQLREHE 862 Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA--KGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ + + LM+ +PL + K + Sbjct: 863 ARLLLQVHDELLLEVPEASARAAGARVADLMSSVKPGGEPLSVPLVVDWGVGKNW 917 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 260 bits (664), Expect = 7e-67, Method: Composition-based stats. Identities = 91/599 (15%), Positives = 166/599 (27%), Gaps = 135/599 (22%) Query: 86 IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 + + + + VL L G+ L R + + Sbjct: 405 VPLEPRALVDLEVLGWLVDSADVAHGLDQLARR----------WLGRHLDDRGPLEAEAA 454 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P V + +L++ +D E L + + G ID Sbjct: 455 PLGARQWVEVVHPIRE----ALERRLTEDDLWRL---ATDVEIPLTRVLTDMEIHGVAID 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 D++ + +A ER + ++ G + + L + LF G+ ++ Sbjct: 508 RDVLAAIGTELATERDRALAEVRHYAGGEL-NPNSPRQLAVVLFERLGLPAGRKTKTGYS 566 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L IL L + +DGR+ T A RTGR Sbjct: 567 TDARVLESLRDAHPIVAAILRFRELDKLLSTFYEGLRSEIGADGRIHATFNQAVA-RTGR 625 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R +A+ G LV A Sbjct: 626 ISSERPNLQNIP------------------------VRTDEGKRFRDAFVATEGHVLVAA 661 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA ++G++ ++ + D++ A+ F P ++V+ +QR++ K++ L Sbjct: 662 DYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAARVFGVPAERVTPQQRSVAKMVTYGL 721 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 + A + + Sbjct: 722 --------------------------------------------SYGMEAYGLAQRLGVP 737 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 E + + A G+ + Sbjct: 738 PAEAEGILADFFAAFPGLRHYRDASVDAARAQG--------------------------F 771 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR D+ T R+ G Q ++ DI + Sbjct: 772 TTTLLGRRRYLPDLDSPN---RTVRQGAERQAMNAG------TQGLAADIFKIALVRLHA 822 Query: 620 NGYD----IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +VL VHDE+V E V L ++ +A +PL+ + + + Sbjct: 823 ALSPTDGALVLQVHDEVVVEAVAERAHDVRALVEDVLEHA--FALRVPLRVQSGVGRSW 879 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 105/679 (15%), Positives = 179/679 (26%), Gaps = 147/679 (21%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLF 75 L +G + + + A A L + L +L DET AH+ Sbjct: 336 LAFLGTYG-SGTGRLDGIAIATSAGAAYLDPARLTQEDEAALAAWLADETKPKAAHDVKG 394 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + G+D+ T++ A + + Sbjct: 395 PLLALWEH-GLDLRGLTC-DTAIAAYLAMP-----------GQRSFPIEELV----LRYL 437 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGER 185 + P D + +A REL L + E Sbjct: 438 NRELRYETPADGQASLFDDVEAGMARDLALKAQAVRELADALERHLAARGGTRLMTEVEL 497 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + G D L+ + K+ E L G + L+ L Sbjct: 498 PLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHALV-GEQFNLGSPKQLQEIL 556 Query: 246 FLITGIDLVD---MSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVS 300 F+ G+ T L+ ++L + + L + ++ Sbjct: 557 FVKLGLPKTKKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKLRAT-VEGLIKEIA 615 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T A TGR S QN+P Sbjct: 616 DDGRIHTTFNQIVA-ATGRLSSEKPNLQNIP------------------------IRTAE 650 Query: 361 SDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I G L+ AD + IE R++A ++G++ I AF +G D + T A+ F Sbjct: 651 GRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGL 710 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P D+V+ E RA K M L Y L++ Sbjct: 711 PPDQVTPELRARIKAMNYGLAYG-----LSDFGLAGQLNIPVA----------------- 748 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 +K+ + + GV + + + + Sbjct: 749 ----------------------EARALKEEYFEEFAGVREYLNRVVDQARKDGYTETIL- 785 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR D+ D ++ Sbjct: 786 -------------------------GRRRYLPDLTSDNRQRREMAERM---------ALN 811 Query: 600 NIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K ++L VHDE+V E + L M Sbjct: 812 APIQGSAADIIKVAMLKVRKAMEGMRSRMLLQVHDELVFEVAPGELDDLIALVREHMGGA 871 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL + Sbjct: 872 YP--LRVPLDVSIGTGPTW 888 >gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 431 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 79/518 (15%), Positives = 151/518 (29%), Gaps = 111/518 (21%) Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 K D E T + L E L + + G R+D + ++Q ++ K+++E Sbjct: 14 SKLDSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEE 71 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L + LF G+ ++ ++ T +L IL Sbjct: 72 KIYAEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADIL 130 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L + + D ++ ++TGR S QN+P Sbjct: 131 TYRQIAKIQSTYVEGLLKVIQPDNKIHTRYVQT-LTQTGRLSSVDPNLQNIP-------- 181 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWK 398 +R + + +D + IE RVLA I+ ++ Sbjct: 182 ----------------IRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHL 225 Query: 399 IKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+DI+ +T + F + V+ R K + + Y L Sbjct: 226 KEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNL 280 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + FE + + + + + + L R + Sbjct: 281 GITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR---------RRYLSDI 331 Query: 518 LQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 +L + SA + + + M RRL + Sbjct: 332 NSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMA-------------RRLKEEKL--- 375 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 QA ++L VHDE+V E Sbjct: 376 --------------------------QAT------------------MLLQVHDELVFEV 391 Query: 637 PDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 P++ + L +M S +PL + K + Sbjct: 392 PESELEQLNQLVKEVMEHAVS--LHVPLITDSSWGKTW 427 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 444 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L + IL + ++ L + + GRL Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 563 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR C QN+P +R Sbjct: 564 FNQT-ATATGRLCCCDPNLQNIP------------------------VRTPLGQRIRRGF 598 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V Sbjct: 599 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 658 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + ++ Sbjct: 659 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 713 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + L G R + K + E + Sbjct: 714 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 760 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + + Sbjct: 761 -----------------MKLAMVKLFPRLEEMG--------------------------- 776 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 + +V E P +V L +M A +PL+ E Sbjct: 777 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 821 Query: 668 YEAKRY 673 + + Sbjct: 822 GIGEDW 827 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 187/663 (28%), Gaps = 151/663 (22%) Query: 39 DEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI- 94 D D T L +L D H + D+ + W Sbjct: 363 DGNGGYIDTAMLTPDDD--DALAAWLADPDNPKALHEAK-----LAMH---DLAGRGWTL 412 Query: 95 -----CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 T++ A +L + L E + E ++D Sbjct: 413 GGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE---QEQFSLLDNVDEVDKQ 469 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + ++A + D E L L + E + + + G DL L+ Sbjct: 470 AIQTLILRARAVVDLAAALDAELDLIDSTSL--LGEMELPVQQVLADMEKAGIAADLRLL 527 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKS 263 +LQ + + + G + L++ LF G+ ++ T Sbjct: 528 TELQSQFGDQIRDA-AEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTKRTKTGYTTDAD 586 Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 L +L + + ++ L AV++DGR+ T A+ TGR S Sbjct: 587 ALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLS 644 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN---GKK-LV 377 QN+P A +R + + G L+ Sbjct: 645 STEPNLQNIP------------------------IRTNAGRQIRDAFVVGSENNGYTELM 680 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R++A ++ ++ I+AF GED++ ++AF PI+ ++ E R K M Sbjct: 681 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAM-- 738 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + GL A + K Sbjct: 739 ------------SYGLAYGLS------------------------------AYGLATQLK 756 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + +L + + A+ GV D+ E + Sbjct: 757 ISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVL------------------- 797 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR ++ + A + +Q + DI+ M Sbjct: 798 -------GRRRYLPELDSSNRQIREAAERA---------ALNAPIQGSAADIIKVAMIAV 841 Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L VHDE++ E + + M +PL+ Sbjct: 842 DKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAYP--LDVPLEVSVGFG 899 Query: 671 KRY 673 + + Sbjct: 900 RSW 902 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 187/663 (28%), Gaps = 151/663 (22%) Query: 39 DEPVKLWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI- 94 D D T L +L D H + D+ + W Sbjct: 367 DGNGGYIDTAMLTPDDD--DALAAWLADPDNPKALHEAK-----LAMH---DLAGRGWTL 416 Query: 95 -----CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 T++ A +L + L E + E ++D Sbjct: 417 GGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE---QEQFSLLDNVDEVDKQ 473 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + ++A + D E L L + E + + + G DL L+ Sbjct: 474 AIQTLILRARAVVDLAAALDAELDLIDSTSL--LGEMELPVQQVLADMEKAGIAADLRLL 531 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKS 263 +LQ + + + G + L++ LF G+ ++ T Sbjct: 532 TELQSQFGDQIRDA-AEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTKRTKTGYTTDAD 590 Query: 264 ILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 L +L + + ++ L AV++DGR+ T A+ TGR S Sbjct: 591 ALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAADGRIHTTFNQTIAT-TGRLS 648 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN---GKK-LV 377 QN+P A +R + + G L+ Sbjct: 649 STEPNLQNIP------------------------IRTNAGRQIRDAFVVGSENNGYTELM 684 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R++A ++ ++ I+AF GED++ ++AF PI+ ++ E R K M Sbjct: 685 TADYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAM-- 742 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + GL A + K Sbjct: 743 ------------SYGLAYGLS------------------------------AYGLATQLK 760 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + +L + + A+ GV D+ E + Sbjct: 761 ISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVL------------------- 801 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR ++ + A + +Q + DI+ M Sbjct: 802 -------GRRRYLPELDSSNRQIREAAERA---------ALNAPIQGSAADIIKVAMIAV 845 Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEA 670 K ++L VHDE++ E + + M +PL+ Sbjct: 846 DKSLKQAKLASRMLLQVHDELLFEVAIGEREQIEAMVREQMGSAYP--LDVPLEVSVGFG 903 Query: 671 KRY 673 + + Sbjct: 904 RSW 906 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 259 bits (662), Expect = 9e-67, Method: Composition-based stats. Identities = 89/606 (14%), Positives = 155/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + GI + +LA ++ + Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A Y E + L + E+ L + + Sbjct: 394 ----------GEWTEEAGERALLSERLYAALLERLKGE-ERLLWLYEEVEKPLSRVLAHM 442 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L + E ++L+E++ +L + L LF G+ Sbjct: 443 EATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLNSRDQLERVLFDELGLPAI 501 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L D IL S ++ L V RL Sbjct: 502 GKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTR 561 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 562 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 596 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G KLVV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 597 VAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLM 656 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + + Sbjct: 657 RRAAKTINFGVLYGMSAHRLSGE-----LAIPYEEAVAFIERYFQSYPKVRAWIEKTLAE 711 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 E + L G R + K + E + Sbjct: 712 GRERGYVETLFGR---------RRYVPDLASRVKSIREAAERMAFNMPVQGTAADL---- 758 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + L Sbjct: 759 -----------------MKLAMVKLFPRLQELG--------------------------- 774 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEG 667 + E+V E P V M + W +PL+ E Sbjct: 775 --ARMLLQVHD-----------ELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVEV 819 Query: 668 YEAKRY 673 + + Sbjct: 820 GIGEDW 825 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 92/681 (13%), Positives = 176/681 (25%), Gaps = 141/681 (20%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63 DIE LP Y +Q + D+ + D + L Sbjct: 302 FDIE--DLMVLPVCTQQPYLDQ-QLYGFMIP-KDKTIYYISV---ENALEDTNFKKILET 354 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS-VLARTNGLPS-SLKNACLALNFS-E 120 + + ++ L + + + + AL+ + Sbjct: 355 KEISTW--DTKEMMHLLDRY---GFKWNTFNDDLHIAGFLLNSTATDSDAVLEALHITLP 409 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIP 179 K + + P + R + Y K+ + L Sbjct: 410 ESFHDV---------SKKTKEEPAFSLNREQALCHSLTQQLYEKKGEILQSLKEENVLSL 460 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + ++ G I + + L+ ++ + L + I G+I + Sbjct: 461 YREIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIY-SHAGMIFNINSPK 519 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L LF + T +L D IL S + ++ L + + Sbjct: 520 QLANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYRKISKVSSTYIDGLKKHI 579 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 SD ++ + ++TGR S QN+ Sbjct: 580 RSDQKIHTSFNQTM-TQTGRLSSSEPNLQNI------------------------SIRDE 614 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A G L+ AD + IE R+LA +A ED IKAF G DI+ T FN Sbjct: 615 LGKEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLDIHTKTATLIFNC 674 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + + + Sbjct: 675 SPE--------------------------------------------EVDEHKRRIAKTV 690 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + + + K + + + + L + Sbjct: 691 NFGIVYGQTEFGLSSQLNITRKEAGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFH 750 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR + + N T + + Sbjct: 751 RRREI------------------------------PEINDKNFMTREFGKRA-----AMN 775 Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 +Q + D++ M + ++L +HDE++ PD + L M Sbjct: 776 APIQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELIFLVPDEELDLMQKLVKETME 835 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 +PLKA K + Sbjct: 836 SAME--LKVPLKASISVGKSW 854 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 98/670 (14%), Positives = 183/670 (27%), Gaps = 144/670 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL---------LQYLRDETVM 67 K + + +A +T A+ E + ++ + + L + L V Sbjct: 330 TKNVLPLFVNEAGLTGVGLAFGKEDIYVFTTEQGMEISELLEQVETLSKEVDVLAIADVK 389 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 N++ ++ T V A LKN + + + + Sbjct: 390 ----NAM--------QYIPNVNQSVCFDTIVAAYLLNP---LKNDYESADIAREYLDILI 434 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 I K A++ R E E +L + E L Sbjct: 435 DDNQIDEAQKSC----------YEAYTAYESSKILRDRLKETEME---QLFD--EIEMPL 479 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + G ++ + + E + Q+ L++DI +LT G + L + LF Sbjct: 480 VFTLYDMEQNGVKVAAEALHIYGEQLGQKIVDLEKDIYELT-GETFNINSPKQLGVILFE 538 Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 G+ ++ T IL IL + + L+ + DGR Sbjct: 539 KLGLPHGKKTKTGYSTSADILDKLAPEYPVVSKILEYRQLTKLKSTYADGLAGYIKDDGR 598 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + G + TGR S QN+P + Sbjct: 599 IHGKFNQT-ITATGRISSTEPNLQNIP------------------------VRMELGRLI 633 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R I +G V AD + IE R+LA +G++ I A+ DI+ T ++ F+TP ++V Sbjct: 634 RKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITASQVFHTPFEEV 693 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + QR K + + Y + L + + S FE + + Sbjct: 694 TDLQRRNAKAVNFGIVYG-----ISSFGLSQDLSITKKEAAQYIESYFETYPSIKGFLDD 748 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + E + G + + V Sbjct: 749 AVEHAKENGYVTTVFGRRRPV---------PELSSSNFMQRSFGERVAMNAPIQGTAADI 799 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + RRL ++++ Sbjct: 800 MKIAMNGVN------------RRLKENNMRSKLV-------------------------- 821 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 DE++ E + V + S M +PL Sbjct: 822 ----------LQVH-----------DELLIEAYEEELEDVKEILSHEMVNAAK--LHVPL 858 Query: 664 KAEGYEAKRY 673 + + + K + Sbjct: 859 EVDMHTGKNW 868 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 95/594 (15%), Positives = 170/594 (28%), Gaps = 133/594 (22%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + R S++A + L RF SI + D Sbjct: 404 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIANGSVDVE 447 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + V+A E RE L E L + G ID + + + Sbjct: 448 CVSMVKALLAMNEVACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 503 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +E ++ E+I +L G + L + LF + ++ ++ T +L Sbjct: 504 TTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVL 562 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324 + IL + + L+ ++ R+ T + TGR S Sbjct: 563 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMV-TATGRLSSSD 621 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R+ G LV AD + Sbjct: 622 PNLQNIP------------------------VRTEKGREIRALFYPGAGYDTLVSADYSQ 657 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++G++ IKAF G+DI+ T A+ D+V+ E+R+ K + + Y Sbjct: 658 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYG- 716 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + F + + + + M + E + G Sbjct: 717 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 772 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 EL + + Sbjct: 773 EL---------PDINSRNFNRRSFAER--------------------------------- 790 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNG- 621 + +NT KL N V Q + Sbjct: 791 --------------TAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEQNF 821 Query: 622 -YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E ++ ++ L M +PL + + A+ + Sbjct: 822 TSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 95/594 (15%), Positives = 170/594 (28%), Gaps = 133/594 (22%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + R S++A + L RF SI + D Sbjct: 400 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIANGSVDVE 443 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + V+A E RE L E L + G ID + + + Sbjct: 444 CVSMVKALLAMNEVACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 499 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +E ++ E+I +L G + L + LF + ++ ++ T +L Sbjct: 500 TTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKLNLPIIKKTKTGYSTDAEVL 558 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324 + IL + + L+ ++ R+ T + TGR S Sbjct: 559 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMV-TATGRLSSSD 617 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R+ G LV AD + Sbjct: 618 PNLQNIP------------------------VRTEKGREIRALFYPGAGYDTLVSADYSQ 653 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++G++ IKAF G+DI+ T A+ D+V+ E+R+ K + + Y Sbjct: 654 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYG- 712 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + F + + + + M + E + G Sbjct: 713 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 768 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 EL + + Sbjct: 769 EL---------PDINSRNFNRRSFAER--------------------------------- 786 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNG- 621 + +NT KL N V Q + Sbjct: 787 --------------TAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEQNF 817 Query: 622 -YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E ++ ++ L M +PL + + A+ + Sbjct: 818 TSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 869 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 106/657 (16%), Positives = 184/657 (28%), Gaps = 138/657 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGI 86 ++ A A D L A + L +L D T H++ F ++ G Sbjct: 358 GRLSGLALASDGHHAWLDPSALDEADENALAAWLADPTATKAVHDAKRFGLAC--RSHGW 415 Query: 87 DIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDS 142 ++ T++ A SL+ L + L G ++ Sbjct: 416 NLDGVT-SDTALAAYLVRPDLKSDSLEALATRYLGRELNPRTAAAQPTLDGLETDGENEA 474 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 A + ++ L+D E + + + G D Sbjct: 475 AANLAALAAATRDLAEV-------LDGELASHNAAGLLADMELPVMTVLTEMEAIGITAD 527 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259 + + L+ A E + D + R L+ LF G+ ++ Sbjct: 528 VAHLTGLESTFAAEAAEAVAAAHAAVDQTF-NLRSPKQLQEILFDKLGMPKTKRTKTGYT 586 Query: 260 TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T L+ + + ++ +R ++ L V+ DGR+ T Q A Sbjct: 587 TDADSLAGLYATTQHPVLEAILRHRDREKLKQT--VSGLLAEVAEDGRIHTTYQQNVA-A 643 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P A +R I + G Sbjct: 644 TGRLSSKDPNLQNIP------------------------VRTDAGRRIRQGFIVTEGFET 679 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R++A ++G++ I+AF +GED++ T A+ FN V EQR K M Sbjct: 680 LMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPGSVDAEQRRRIKAM 739 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L GL + + Sbjct: 740 SYGL--------------AYGLS------------------------------AYGLSQQ 755 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + + GV + + E Sbjct: 756 LGITPEEARGLMEEYFTRFGGVRDYLRTVVEEARKAGYTETMF----------------- 798 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ D + +Q + DI+ M Sbjct: 799 ---------GRRRYLPDLNSDNRQRRDMAERA---------ALNAPIQGSAADIMKIAML 840 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665 N + ++L VHDE+V E V L M +PL+ Sbjct: 841 NVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVRAEMASAAELM--VPLEV 895 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 88/606 (14%), Positives = 155/606 (25%), Gaps = 141/606 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + GI + +LA ++ + Sbjct: 353 DLAVLALREGIALAPG--DDPMLLAYLLDPSNTAPEGVARRYG----------------- 393 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A Y E + L + E+ L + + Sbjct: 394 ----------GEWTEEAGERALLSERLYAALLERLKGE-ERLLWLYEEVEKPLSRVLAHM 442 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L + E ++L+E++ +L + L LF G+ Sbjct: 443 EATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLNSRDQLERVLFDELGLPAI 501 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T ++L D IL S ++ L V RL Sbjct: 502 GKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTR 561 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P +R Sbjct: 562 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 596 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G +LVV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V Sbjct: 597 VAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLM 656 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y A L + F+ + + + + Sbjct: 657 RRAAKTINFGVLYGMSAHRLSGE-----LAIPYEEAVAFIERYFQSYPKVRAWIEKTLAE 711 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 E + L G R + K + E + Sbjct: 712 GRERGYVETLFGR---------RRYVPDLASRVKSIREAAERMAFNMPVQGTAADL---- 758 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +L + L Sbjct: 759 -----------------MKLAMVKLFPRLQELG--------------------------- 774 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEG 667 + E+V E P V M + W +PL+ E Sbjct: 775 --ARMLLQVHD-----------ELVLEAPKEQAEEVAQEAKRTMEEV--WPLKVPLEVEV 819 Query: 668 YEAKRY 673 + + Sbjct: 820 GIGEDW 825 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 117/695 (16%), Positives = 207/695 (29%), Gaps = 164/695 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-----D 56 +DIET + E I L + D+P + D + +P+ Sbjct: 1057 KLCTLDIETTGLN---------HRED-RIRLLQISTPDQPSVVIDVFKV-PVPTLKECTW 1105 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----SLKN 111 L++ L + V V HN F+ G ++ T + A+ L + Sbjct: 1106 LVKLLGSQAV-KVLHNGKFDINFLS-HNGFNVKG-PIFDTMIAAKLLSATRFNWSCKLGH 1162 Query: 112 ACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 LN + +F ++D + L Y + Sbjct: 1163 VAERYLNIVLDKS---------QQFSDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLK 1213 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--- 227 E RL ++D E L + G ++DLD + LQ + +E + + + Sbjct: 1214 AE---RLDMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGDTLGV 1270 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMS--EGTLKSILSHSNITQLAKDLILNRLASS 285 + + + L +D + T + LS + + L R ++ Sbjct: 1271 SSNPNFNYNSQRQILQALQQQKVMDKTRRGLIQDTSERTLSRNTYHPAIQALREYR-KTN 1329 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + + S GR+ + GA GR+S Q +PR Sbjct: 1330 KAVTAFTEKIPNHIDSATGRIYPNINQIGAES-GRFSCDNPNLQQIPRDS---------- 1378 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R C IA G KLV+AD + IE R+ A IA + I+A+ + Sbjct: 1379 ------------------RFRECFIADKGNKLVIADFSQIELRIAADIAEDRRMIEAYNS 1420 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GED++ T + N PI +V+KE+R + K + L + F+ A Sbjct: 1421 GEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYA------------ 1468 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 E L A + ++ + G+ + + Sbjct: 1469 --------------------------ESCYGVVLSVPAAREIYDSFFKSYSGITAWHERM 1502 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + S+ Sbjct: 1503 KAA------KPISVRTLSNRLSVFDQFSFT------------------------------ 1526 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP 640 + VQ S DI E M ++L +HDEI+ E P++ Sbjct: 1527 -----------RSLNYPVQGTSADITKEAMALLVDRVADISGKMILCIHDEIILEVPESN 1575 Query: 641 Y-FSVGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 ++ L M + + +P KA G + Sbjct: 1576 ANKALEVLIETMETAGNKFLRYVPCKAMGSIGDSW 1610 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 101/603 (16%), Positives = 176/603 (29%), Gaps = 127/603 (21%) Query: 91 KRWICTSVLARTNGLPSS---LKNACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYD 146 I S+LA G L + + ++ K L C S Sbjct: 422 GTIIDLSILAYACGDAQKVAYLSDLAELYRLNYPISSENTGMKELPENNCSISSAEAEAQ 481 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYR 200 + Y + + ++ +S + L + + G Sbjct: 482 AQAVAVADLNKELISYFNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVLTQMERDGVA 541 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 +D ++ + E + E + ++I KL + L LF G+ + Sbjct: 542 VDEAVLQRQTEAFSSEIADIADEIYKLAGHEF-NLNSPRQLAEVLFNELGLPGGKKLKSG 600 Query: 260 --TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L H DLIL S + L + +++D R+ T ++T Sbjct: 601 YSTSAEDLMHLQDLHPIVDLILRYRMLSKLLSTFIVGLHKYIAADHRIHTTFHQT-LTQT 659 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R+ IA+ G L+ Sbjct: 660 GRLSSSDPNLQNIP------------------------ARTEEGRRIRAAFIAAPGCILI 695 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA ++G+ +KAFA EDI+ T A+ F+ V+ E R Sbjct: 696 DADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARVFHMDPVDVTSEHRR------- 748 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + G+ A Sbjct: 749 -------VGKTINFSIVYGIS------------------------------AFSLAQDLH 771 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + A + + DL E + +R +P L + + R Sbjct: 772 ISVAEAKNYIAEYYATYPQIKAYLNDLVERAK--IDGYVETMFKRRRYIPELKSKNYNRR 829 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + G+ +NT +Q + DI+ M N Sbjct: 830 LF---------------GERVAMNT------------------PIQGTAADIMRLAMVNL 856 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEA 670 + ++L +HDE+V E P+ + V L M + LP E Sbjct: 857 ARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRNEMERVIDLKVSLP--VELEYG 914 Query: 671 KRY 673 K + Sbjct: 915 KNW 917 >gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597] gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597] Length = 877 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 93/671 (13%), Positives = 185/671 (27%), Gaps = 156/671 (23%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85 + A++ D KL+ + + + + ++T + V ++ + LG Sbjct: 333 DLVGFAWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRLG 384 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 +D+ + + L + ++ +L + ++ Sbjct: 385 VDLQAPAFD---------------SRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 146 DCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIND 196 + + + VE L ++L D E+ L + + Sbjct: 430 KGVKKALPEREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEI 489 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 490 AGITVKKETLLEMQTENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYT 548 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL+ + + L + + +DG++ Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQ 608 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 609 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 643 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQR 429 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R Sbjct: 644 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDR 703 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L Sbjct: 704 RNAKAVNFGVVYG-----ISDFGLSNNL-------------------------------- 726 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + + G+ ++ Sbjct: 727 -------GISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK---------- 769 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + R + +Q + DI Sbjct: 770 ----------------RRRELPDINSRNFNIRGFA---ERTAI------NSPIQGSAADI 804 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662 L M K ++L VHDEIV E P + + L M + +P Sbjct: 805 LKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQ--LSVP 862 Query: 663 LKAEGYEAKRY 673 L A+ E + Sbjct: 863 LIADENEGATW 873 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 90/592 (15%), Positives = 155/592 (26%), Gaps = 148/592 (25%) Query: 94 ICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +LA +++ + Sbjct: 438 DDPLLLAYLLDPANTAMPAVAKRY-LDTDWPED----------AGTRAAIAAQLLELLPP 486 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Y ++ E+ L + + RG R+D + + L Sbjct: 487 QLDAARLKLY------------------TEVEKPLSGVLARMEARGVRLDSEYLQGLSLA 528 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSH 267 +A+ ++L+ I + S R L L+ G+ ++ T + L Sbjct: 529 LAERLERLEAQIHEAAGREF-SIRSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEP 587 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 LIL L+ L V+ GRL T A TGR S Sbjct: 588 LRDEHPIIPLILEYRELEKLRGTYLDPLPRLVNPRTGRLHTTFAQT-AVATGRLSSLNPN 646 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R IA G +LV AD + +E Sbjct: 647 LQNIP------------------------IRSEEGRQIRKGFIADGGFRLVAADYSQLEL 682 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R++A IAG++ +AF G DI+ T A+ V QR K + Sbjct: 683 RLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTVN---------- 732 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G+ + + + Sbjct: 733 ----FGVLYGMS------------------------------AHRLSNELGIPYAEATSF 758 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + G+ + ++ E + R Sbjct: 759 IENYFGIYPGIQRYIEETLEFGRQHGY--------------------------VETLYGR 792 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGY 622 R ++K L A +L +Q + DI+ M G Sbjct: 793 RRYVPELKARNRNLREAGERL---------AYNMPIQGTAADIMKMAMVALEPQLDALGA 843 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P V L +M +PL E + + Sbjct: 844 RMLLQVHDELLIEAPADRAEEVAALTRQVMEGVVE--LNVPLAVEAGISDNW 893 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 82/607 (13%), Positives = 155/607 (25%), Gaps = 145/607 (23%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ + ++A ++ + Sbjct: 357 DLAVLALREGVALDPT--DDPLLVAYLLDPANTHPEGVARRYGGE--------------- 399 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQT 193 A + + L ++L + ER L + Sbjct: 400 ----------------FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAH 443 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + RG R+D+ L+ L + +E ++L+ ++ +L + L LF G+ Sbjct: 444 MEARGVRLDVPLLEALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTP 502 Query: 254 ----VDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + T + L +LIL S L+ L V GRL Sbjct: 503 VGRTEKTGKRSTAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHT 562 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A+ TGR S QN+P +R Sbjct: 563 RFNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRKA 597 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G L+ AD + IE RVLA ++G++ + F G+DI+ T A F V ++ Sbjct: 598 FVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQK 657 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y A L + F+ + + + + Sbjct: 658 MRRAAKTVNFGVLYGMSAHRLSQE-----LGIDYKEAEAFIERYFQSFPKVRAWIERTLE 712 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + L G R + + + E + Sbjct: 713 EGRTRGYVETLFGR---------RRYVPDLASRVRSVREAAERMAFNMPVQGTAADL--- 760 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + L Sbjct: 761 ------------------MKIAMVKLFPRLKPLGAHL----------------------- 779 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + +VL E P+ L +M +PL+ E Sbjct: 780 ------LLQVHDE---LVL--------EVPEDRAEEAKALVKEVMENAYP--LDVPLEVE 820 Query: 667 GYEAKRY 673 + + Sbjct: 821 VGVGRDW 827 >gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379] gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379] Length = 879 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 92/688 (13%), Positives = 188/688 (27%), Gaps = 149/688 (21%) Query: 6 IDIETRSPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 ID T S + V Y E + + + + ++ + ++ YL+ Sbjct: 317 IDF-TDS-----TLHVECYTEDYHNSDVVGIVV-YKEGTAYIFSEEQF-FTNEFVVDYLQ 368 Query: 63 DETVMCVAHNSLFE---RILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLAL 116 E + ++ + K G+DI + +++ + + K L Sbjct: 369 SE-ISKTV----YDFKKILFIAKRNGVDINGE-VFDVKIVSYLLDVNAKTEIDKIVFNYL 422 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + GK + A ++ L + E Sbjct: 423 GKIMSSDEEIYGKGAKR----TLPAQEVINPYIAEIAESIALIKPLMEEK--LAEENMTD 476 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L D E + + + G + + ++ + K L+ I L + Sbjct: 477 LYK--DIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLAGSEF-NIA 533 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L + LF G+ + ++ T +L + LI+ + Sbjct: 534 SPKQLGVVLFEDLGLPPIKKTKTGYSTAVEVLEQLQHSHEIIPLIMEYRTITKLNSTYAK 593 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + ++ +G++ + A +TGR S QN+P Sbjct: 594 GLVKDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIP---------------------- 630 Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + S+ + ++ D + IE RVLA IA + I AF + DI+ T Sbjct: 631 --TRIEEGKKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKT 688 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + +D+V+ R K + + Y L Sbjct: 689 ASDVNGVSLDEVTSSMRREAKAVNFGIVYG-----ISDFGLSNNL--------------- 728 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + + + +GV + D+ + Sbjct: 729 ------------------------GITRKRAKEFIDKYLETFKGVDKYMTDIVDFAREHG 764 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR D+ + Sbjct: 765 YVETLFN--------------------------RRRALPDINAKN---------KIVANL 789 Query: 593 YGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-G 645 + +Q + DI+ M N T ++L VHDE++ + Sbjct: 790 NARIAMNSPIQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTK 849 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + + LKAE + Sbjct: 850 EMIKIMEEAAN--LDVQLKAEASSGASW 875 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 100/627 (15%), Positives = 193/627 (30%), Gaps = 129/627 (20%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 S+L D+++ + ++ + I+ + ID+ + + S + Sbjct: 361 LSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNSTESNYEID 418 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + K EE K + D ++ + + Sbjct: 419 HLASSYFNK--AYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQMQKIE 476 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E K L + E L + + G R D++++ ++ E I + L+ +I K D Sbjct: 477 AEGMKDLY--INVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADE 534 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF + ++ ++ T +L L D IL S Sbjct: 535 QF-NINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKI 593 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + ++ GR+ + TGR S QN+P Sbjct: 594 KNTYIDGLRDVINKKTGRIHSRFNQTV-TSTGRISSTEPNLQNIP--------------- 637 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +++S G LV +D + IE RVLA ++ + + I AFA+G Sbjct: 638 ---------IKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGL 688 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T ++ F+TP D+VS E R++ K + + Y L+ Sbjct: 689 DIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYG-----ISDYGLSQNLN-------- 735 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + QG+ + D+ Sbjct: 736 -------------------------------IPRKEAKTYIDNYLGHFQGIKKYMNDIIH 764 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + RR ++K + + + Sbjct: 765 VGTEKGYVETLLH--------------------------RRRYIPELKAKNFNIRSFGER 798 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ M ++L +HDE+V + PD Sbjct: 799 I---------ALNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE 849 Query: 641 YFSVGTLCSLMTKNPSWAK--GLPLKA 665 V +C +M A +PL Sbjct: 850 ---VAEVCEIMKDVMDNALIMKVPLSV 873 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 100/627 (15%), Positives = 193/627 (30%), Gaps = 129/627 (20%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LK 110 S+L D+++ + ++ + I+ + ID+ + + S + Sbjct: 361 LSNLKALWEDDSIEKLGYDLKEDIIVL-QYNKIDLK-NYCHDSMIAEYLLNSTESNYEID 418 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + K EE K + D ++ + + Sbjct: 419 HLASSYFNK--AYKSEEELLGKGVKKKKFQEIDEGDLNSYFSYILNMVYKISPLQMQKIE 476 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E K L + E L + + G R D++++ ++ E I + L+ +I K D Sbjct: 477 AEGMKDLY--VNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADE 534 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF + ++ ++ T +L L D IL S Sbjct: 535 QF-NINSPKQLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKI 593 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L + ++ GR+ + TGR S QN+P Sbjct: 594 KNTYIDGLRDVINKKTGRIHSRFNQTV-TSTGRISSTEPNLQNIP--------------- 637 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +++S G LV +D + IE RVLA ++ + + I AFA+G Sbjct: 638 ---------IKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGL 688 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T ++ F+TP D+VS E R++ K + + Y L+ Sbjct: 689 DIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYG-----ISDYGLSQNLN-------- 735 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + QG+ + D+ Sbjct: 736 -------------------------------IPRKEAKTYIDNYLGHFQGIKKYMNDIIH 764 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + RR ++K + + + Sbjct: 765 VGTEKGYVETLLH--------------------------RRRYIPELKAKNFNIRSFGER 798 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ M ++L +HDE+V + PD Sbjct: 799 I---------ALNTPIQGTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE 849 Query: 641 YFSVGTLCSLMTKNPSWAK--GLPLKA 665 V +C +M A +PL Sbjct: 850 ---VAEVCEIMKDVMDNALIMKVPLSV 873 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + +L + + ++ + K GID Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KGID 400 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIIYAADY 668 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + +NT + + + G Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLEEEG 833 Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 85/607 (14%), Positives = 172/607 (28%), Gaps = 128/607 (21%) Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS-EHLTKMEEGKALIAR 134 L ++ G +PS + + A + + +L KA Sbjct: 195 MHLLQRY-GFYVPSFK-EDLHLAAFLLHSQATDTDSLISSLGIELPETIHDLLKKAKTVE 252 Query: 135 FC-KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 C + T ++ +F + L + E+ L + Sbjct: 253 ACHIDRLLPVTCAWTWQLSIRQDNIFD---------ELKKDNLLDLYENIEKPLVRILFE 303 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + ++G ID +++ ++ + L + I ++ + + L L+ + Sbjct: 304 MENQGIHIDENVLDEIGAKTDTILESLTQQIHEMAHMVF-NINSPKQLAGVLYDELNLKG 362 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 T +L + D++L+ S + L + + D ++ Sbjct: 363 GGKKRSTSAEVLEKLKGSHPIIDVLLDYRKYSKIKSTYIEGLKKHIQQDSKIHTCFNQAM 422 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 ++TGR S QN+ +R +A G Sbjct: 423 -TQTGRLSSSDPNLQNI------------------------SVRDEQGREIRKAFVAQKG 457 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 KL+ AD + IE R+LA +A E I+AF G DI+ T + F+ + V+ + R + K Sbjct: 458 YKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAK 517 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G SQ +K Sbjct: 518 TVN--------------FGIVYGQTEFGLSQQLK-------------------------- 537 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + A + + Q L + RR+ Sbjct: 538 ----ISRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETMFHRRRMI--------- 584 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + + N T + + +Q + D++ Sbjct: 585 ---------------------PEINDKNFMTREFGKRA-----AMNAPIQGSAADLIKIA 618 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + ++L +HDE++ PD + L M + +PLKA Sbjct: 619 MIRVDQAMKEKNVKSKMLLQIHDELIFLVPDDELEVMQALVKEAMEQAME--LKVPLKAS 676 Query: 667 GYEAKRY 673 + + Sbjct: 677 INFGQSW 683 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 106/597 (17%), Positives = 181/597 (30%), Gaps = 139/597 (23%) Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 +P W + A N+ + + F ++D+ Sbjct: 402 LPLSLWFDLGLAAYLLDP--------EQRNYGFPRLRD-------SLFADPTVDASAVSP 446 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A + D +L +RL E L + + G +DL + Sbjct: 447 DDTARAAALLAEVYTARLDTAGLTDLVERL------ELPLIPVLLDMERAGIGVDLRSLA 500 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKS 263 +A + +L++++ L + R + L LF G+ + T + Sbjct: 501 AFGAEVATDLTRLEKELHTLAGHPF-NPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQD 559 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L + D IL L+ L + +DGR+ TL A+ TGR S Sbjct: 560 ALERLAGSNPLVDRILEFRKLEKLRSTYLDPLPKLADADGRIHTTLN-NMATATGRLSSS 618 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P G +R C +A GK LV AD + Sbjct: 619 NPNLQNIP------------------------IRGPLGRRMRECFVAGPGKTLVAADYSQ 654 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++GE + AFA G DI+ T + F+ P ++ ++R K + Sbjct: 655 IELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTINF------ 708 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + + A Sbjct: 709 --------GLLYGMGP------------------------------QKLSRDLGIKLDAA 730 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + G+ + ++ E Sbjct: 731 KAFIAKYFERLSGLSAFYDNIVESAKTQGYVTTL-------------------------- 764 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 + RR + D++ S SQ R+ +VQ + DI+ M A K Sbjct: 765 AGRRRLLPDIESKNS---QLASQARRQAI------NTVVQGGAADIIKMAMLAAHKDADL 815 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 G +VL +HDE++ ETP + L LM A +PL + + Sbjct: 816 KRAGAVMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVDWGTGHTW 870 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + +L + + ++ + K GID Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KGID 400 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 668 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + +NT + + + G Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLEEEG 833 Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + +L + + ++ + K GID Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKHTFDAKRAIVALKW-KGID 400 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 668 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + +NT + + + G Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLEEEG 833 Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886 >gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] Length = 883 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 87/667 (13%), Positives = 183/667 (27%), Gaps = 145/667 (21%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + +G+ Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLK------RNYVGL 387 Query: 87 ---DIPSKRW-ICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKG 138 DI + + ++ ++ + S ++ GK Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNARDIGVLANSYQESYVQSDEIIYGKGKKQ-HSVD 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + T+ + + K E + L E + ++ + G Sbjct: 447 VDTLYAHMATKVDVLD-----KLKAKIMPELQQHEQVHLYKNI--EIPIAVILAKMEIAG 499 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ ++K++ + L I +L + L + LF + ++ Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTK 558 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L D IL+ S +N L + + +DG++ + Sbjct: 559 TGYSTSVDVLEKLKYQSPIVDDILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 TGR S QN+P +R + Sbjct: 618 ATGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433 L D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ ++N+ Sbjct: 714 AVNF--------------GIVYGISDYGLAKNL--------------------------- 732 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + K + + Sbjct: 733 ---GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR + D+ + + R + +Q + DI+ Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814 Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIAD 872 Query: 667 GYEAKRY 673 + Sbjct: 873 ANWGHNW 879 >gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] Length = 883 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 84/667 (12%), Positives = 182/667 (27%), Gaps = 145/667 (21%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + +G+ Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LNKILEDKNIAKQVFDLK------RNYVGL 387 Query: 87 ---DIPSKRW-ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKG 138 DI + + ++ + F ++ GK Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVD 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + T+ + + + + + ++L + E + ++ + G Sbjct: 447 VDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAG 499 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ ++K++ + L I +L + L + LF + ++ Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFDKLKLTPAKKTK 558 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ S +N L + + +DG++ + Sbjct: 559 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 TGR S QN+P +R + Sbjct: 618 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433 L D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ ++N Sbjct: 714 AVNF--------------GIVYGISDYGLAKN---------------------------- 731 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + K + + Sbjct: 732 --LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR + D+ + + R + +Q + DI+ Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814 Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQAAQ--LDVPLIAD 872 Query: 667 GYEAKRY 673 + Sbjct: 873 ANWGHNW 879 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 98/663 (14%), Positives = 181/663 (27%), Gaps = 123/663 (18%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A A + E A L ++L D H++ + Sbjct: 352 WGRGTGEVDALAVATASGAAVYVEPAELGEADERALAEWLADPHRPKAIHDAKGPMLALA 411 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKG 138 G+ + T++ A L + L E E G L Sbjct: 412 -ARGMTLAGVT-SDTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQL------T 463 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 D R V+A + D + R RL L + E L + + G Sbjct: 464 IDGIADDDAARELAVRARAVLELAEALDRDLERRGAARL--LHEVELPLTGVLAAMERAG 521 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D+D ++L + + K ++ + ++ LF G+ ++ Sbjct: 522 IAVDVDHFIQLSASLGGQAKDTEQQAHAAVGHEF-NLGSPKQVQQVLFEELGLPKTKRTK 580 Query: 259 G---TLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 T L+ + IL + + +++L + DGR+ T Sbjct: 581 TGYTTDSEALNSLRAKSDHPVLEHILRWREVAKLKSI-VDSLIPMAAEDGRIHTTFNQMV 639 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A TGR S QN+P +R + G Sbjct: 640 A-ATGRLSSTDPNLQNIP------------------------IRTAEGRQIREGFVVGEG 674 Query: 374 K-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 L+ AD + IE R++A ++G++ I+AF +G D + T ++ F P +++ E RA Sbjct: 675 YECLLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARI 734 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K M L Y L + V F+ + + + + + Sbjct: 735 KAMNYGLAYGLSP-----FGLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQD 789 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + ++G R + + E + Sbjct: 790 GYTETILGR---------RRYLPDLTSDNRQRREMAERMALNAPIQG------------- 827 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 I + S R +G S + Sbjct: 828 --SAADIIKVASLRVDRALRERGLASRM-------------------------------- 853 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + DE+V E + L MT PL+ + Sbjct: 854 -LLQVH-----------DELVFEVAPGELEELKELVREQMTGAYELRA--PLEVAMGTGR 899 Query: 672 RYR 674 ++ Sbjct: 900 TWQ 902 >gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] Length = 890 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 84/667 (12%), Positives = 180/667 (26%), Gaps = 145/667 (21%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + +G+ Sbjct: 344 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LNKILEDKNIAKQVFDLK------RNYVGL 394 Query: 87 ---DIPSKRW-ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKG 138 DI + + ++ + F ++ GK Sbjct: 395 QRLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVD 453 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + T+ + + + + + ++L + E + ++ + G Sbjct: 454 VDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAG 506 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVD 255 ++ ++K++ + L I +L + L + LF + Sbjct: 507 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLAPAKKTK 565 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ S +N L + + +DG++ + Sbjct: 566 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 624 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 TGR S QN+P +R + Sbjct: 625 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 660 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433 L D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K Sbjct: 661 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 720 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ ++N Sbjct: 721 AVNF--------------GIVYGISDYGLAKN---------------------------- 738 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + K + + Sbjct: 739 --LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 782 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR + D+ + + R + +Q + DI+ Sbjct: 783 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 821 Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 822 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIAD 879 Query: 667 GYEAKRY 673 + Sbjct: 880 ANWGHNW 886 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 101/659 (15%), Positives = 169/659 (25%), Gaps = 119/659 (18%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTL 84 I A A D T+ L L D V H + Sbjct: 374 RDGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVKWALRAL-WAR 432 Query: 85 GIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 G + T++ A L CL E EG L D Sbjct: 433 GWTLDGVE-SDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGDD 491 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 A ++A D E TR L+ E L + + D G Sbjct: 492 QDTARRELA--LRALATVELALALDAELTRREGLDLLHNL--ELPLAEVLARMEDAGIAA 547 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSE 258 DL + L+ A ++ ++ +L + L+ LF G+ Sbjct: 548 DLTYLRDLEAEFAAAVRQAVDEAHRLVGREF-NLGSPKQLQQILFDELGLPKTKRIKTGY 606 Query: 259 GTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T L+ ++L + + L + ++ DGR+ T + Sbjct: 607 TTDADALAWLAAQTDNELPVILLRHRDQTKLRTT-VEGLIKTIAEDGRIHTTFHQTV-TA 664 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P A +R + G + Sbjct: 665 TGRLSSAEPNLQNIP------------------------VRTDAGRRIRRAFVVGEGYEQ 700 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ ++ I+AF +G D + ++ F P+D+V E RA K M Sbjct: 701 LLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAM 760 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y L + V F + + + + + Sbjct: 761 NYGLAYG-----LSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYT 815 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 ++G R + + E + Sbjct: 816 ATILGR---------RRYLPDLNSDNRQRREMAERMALNAPIQG---------------S 851 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 I L R G S + + Sbjct: 852 AADIIKLAMLRVDRALRENGLASRM---------------------------------LL 878 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E +V L M++ +PL + Sbjct: 879 QVHD-----------ELVLEVAPGELDTVRELVVEHMSQAQQ--LRVPLAVSVGVGPNW 924 >gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] Length = 883 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 84/667 (12%), Positives = 182/667 (27%), Gaps = 145/667 (21%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + +G+ Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LNKILEDKNIAKQVFDLK------RNYVGL 387 Query: 87 ---DIPSKRW-ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKG 138 DI + + ++ + F ++ GK Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVD 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + T+ + + + + + ++L + E + ++ + G Sbjct: 447 VDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAG 499 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ ++K++ + L I +L + L + LF + ++ Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTK 558 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ S +N L + + +DG++ + Sbjct: 559 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 TGR S QN+P +R + Sbjct: 618 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433 L D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ ++N Sbjct: 714 AVNF--------------GIVYGISDYGLAKN---------------------------- 731 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + K + + Sbjct: 732 --LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR + D+ + + R + +Q + DI+ Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814 Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M K ++L +HDE++ + P + TL +M + +PL A+ Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIAD 872 Query: 667 GYEAKRY 673 + Sbjct: 873 ANWGHNW 879 >gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C] Length = 686 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 169/720 (23%), Positives = 282/720 (39%), Gaps = 120/720 (16%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER----ILFKKTLGID-IPSKR 92 P+DL+ ++ + A N FE ++ K+ G + ++ Sbjct: 4 GKGRRAYIP---GGPKPTDLIDHIANGG-PIAAWNITFEFWIWNMVLAKSEGWPWLQLEQ 59 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY---DCTR 149 C AR LP SL A AL K ++GK LI + C+ + T Sbjct: 60 CYCDMAKARRFSLPGSLDTAAKAL---RTAEKDKKGKQLIGKLCRPVSATKARPEPRWTL 116 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 Q + YC +DV++ + + ++ ER+ WL DQ IN RG +D++ + Sbjct: 117 YTAPQDYADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNA 176 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 +++ Q ++ ++ +T+G + S + L +L G + ++ T+ L + Sbjct: 177 LDIVGQTTRRFTMELAAITNGAVGSVSEVAKLTDFL-ATVGCRMHNLKSETVAETLERDD 235 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + A+ ++ R A +G+ + KL +L +SSDGRLR F+GA TGRWS Q QN Sbjct: 236 LNPTARRILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQN 294 Query: 330 LPRQERSEEILTQTIQALNRGETI------------------------------------ 353 L + + + + + + Sbjct: 295 LTSKGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLK 354 Query: 354 -----------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 DP+ L S C+R IA+ GKK V D + IEA VLA +A +W+I+ F Sbjct: 355 HRNLDLIIDIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVF 414 Query: 403 ANGEDIYVTTYAKAFNTPID----------KVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 IY + +K P + ++++GKV ELA GY G +K Sbjct: 415 RTHGKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFG 474 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + FED + + L +D PE + + W Sbjct: 475 A---------------EEHFEDDDAMKKAILGWRDASPEIVEFWGGQYRR-DPYTRKWVR 518 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++ G L + G + V + ++ LPS R L Y Sbjct: 519 EYYG-------LEGAVIMAILNPG-----KCYAVGDITYAVFDDVLYCRLPSGRFLQYHQ 566 Query: 573 VKG-----------DCSYLNTATS------QLMRERTYGGKLTENIVQAISRDILCEGMK 615 K +++ T+ +R TYGG+L EN+ QA + D+ MK Sbjct: 567 PKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQAYAMK 626 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 NGY +V+ HDE+++E P + SV + +LMT W + P++A G+E RY+K Sbjct: 627 QCENNGYPVVMHTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIRAAGWEDDRYQK 685 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 96/603 (15%), Positives = 161/603 (26%), Gaps = 146/603 (24%) Query: 76 ERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133 + +T GI IP+ WI + E K + Sbjct: 383 DLKSLLRTNGIWRTIPNTHWIDLGLATYLLDP-------------EERDYSWP--KLVAR 427 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + + ++ W+ K EL L E L + Sbjct: 428 WGSVFGLSAGNPGLI---ALKVWEQLR--NKLKTAQLLELMDSL------ELPLIPVLAD 476 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G +D + + L E I G + R L LF + Sbjct: 477 MEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGSF-NIRSAQQLGDILFNQLELPA 535 Query: 254 VDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + T + +L + D IL L L + DGR+ T Sbjct: 536 AKKTRGGQASTSQEVLEKLSGQHPIIDTILEYRKLEKLRSTYLEPLPRLIGKDGRVHTTF 595 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A+ TGR S QN+P G +RSC Sbjct: 596 NQL-ATATGRLSSSNPNLQNIP------------------------IRGSLGQRMRSCFT 630 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 AS G L+ AD + +E RVLA + + + AF G DI+ T + + ++V+ ++R Sbjct: 631 ASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYEKSQEEVTADER 690 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + G+ Sbjct: 691 RNAKTINF--------------GLIYGMGP------------------------------ 706 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + A + + + + Q + + + + Sbjct: 707 QKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYDQVEHSAKEYGYVTTI------------ 754 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + RR + D+ + L + I+Q + DI Sbjct: 755 --------------AGRRRLLPDIHSENIQLQALARRQ---------AINTIIQGSAADI 791 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLP 662 + M K ++L VHDE+V E P+ V + LM+ G P Sbjct: 792 IKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPEDNAKEVGKRIAMLMSNVTP--GGKP 849 Query: 663 LKA 665 L Sbjct: 850 LIV 852 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 95/594 (15%), Positives = 170/594 (28%), Gaps = 133/594 (22%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + R S++A + L RF SI + D Sbjct: 404 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIANGSVDVE 447 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + V+A E RE L E L + G ID + + + Sbjct: 448 CVSMVKALLAMNEVACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 503 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +E ++ E+I +L G + L + LF + ++ ++ T +L Sbjct: 504 TTARFKEELTQVQEEIYELA-GETFNINSPKQLGVILFEKMKLPIIKKTKTGYSTDAEVL 562 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324 + IL + + L+ ++ R+ T + TGR S Sbjct: 563 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMV-TATGRLSSSD 621 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R+ G LV AD + Sbjct: 622 PNLQNIP------------------------VRTEKGREIRALFYPGTGYDTLVSADYSQ 657 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++G++ IKAF G+DI+ T A+ D+V+ E+R+ K + + Y Sbjct: 658 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKAINFGIIYG- 716 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + F + + + + M + E + G Sbjct: 717 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 772 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 EL + + Sbjct: 773 EL---------PDINSRNFNRRSFAER--------------------------------- 790 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNG- 621 + +NT KL N V Q + Sbjct: 791 --------------TAMNTPIQG---TAADIIKLAMNQVEQ------------KLEEQNF 821 Query: 622 -YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E ++ ++ L M +PL + + A+ + Sbjct: 822 TSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSVVE--LQVPLIVDVHHAENW 873 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 97/631 (15%), Positives = 173/631 (27%), Gaps = 133/631 (21%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL 116 +L D V H+S + F G ++ T + A L + L Sbjct: 390 WLADAERPKVLHDSKPAVLAFAAH-GWELQGIA-RDTQIAAYLARPDQRSYDLTDLALRY 447 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E + G + +QA D E +R+ + Sbjct: 448 LHRELRV-DAPETGQLTLDGLGDEGV----AEQNLMLQARATLDLADAIDAELSRDGEQS 502 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 ++ E L + T+ G D D + +L+ A E K + ++ + Sbjct: 503 ARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREF-NLG 561 Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLA---SSGSAIL 290 L+ LF G+ T L L + + Sbjct: 562 SPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST- 620 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L ++VS DGR+ T A TGR S QN+P Sbjct: 621 -VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP------------------- 659 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G L+ AD + IE R++A ++ +D I+AF +G D + Sbjct: 660 -----IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 714 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T + F + V+ +QR K M GL Sbjct: 715 AATASSVFTVEVGDVTADQRRKIKAMNY--------------GLAYGLS----------- 749 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + + A GV +++ Sbjct: 750 -------------------AFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARAR 790 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ D ++ Sbjct: 791 QDGYTSTIL--------------------------GRRRYLPDLVSDNRQRREMAERM-- 822 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+V E + Sbjct: 823 -------ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERET 875 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M + +PL+ E + Sbjct: 876 LEALVRKQMGEAYP--LSVPLEVSVGEGHDW 904 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 258 bits (659), Expect = 3e-66, Method: Composition-based stats. Identities = 112/667 (16%), Positives = 189/667 (28%), Gaps = 140/667 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTL 84 +T A A D +A P D L +L D + H + + + Sbjct: 335 GDVTALAIAASDGECAYI--AASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGR 391 Query: 85 GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 G + T++ A +L + L L G+ ++ D Sbjct: 392 GWTL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRY-LKRELRAETSGQEQLSLL----DD 445 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + D A ++ E + LSD E L + I G + Sbjct: 446 TEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIAV 505 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256 D + LQ A + ++ + L++ LF + Sbjct: 506 DSAHLHDLQSRFASQVADAANSAYEVI-DKQINLGSPKQLQVVLFEELDMPKTKKTKTGY 564 Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L+ + + L +L ++ + ++ L +AV+ DGR+ T A Sbjct: 565 TTDAEALQGLFDKTGHPFLEH--LLAHRDATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 621 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P A +R + G Sbjct: 622 -ATGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 656 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE R++A ++G++ I+AF GED++ ++AF PI++V+ E R K Sbjct: 657 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 716 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M GL A Sbjct: 717 AMSYG--------------LAYGLS------------------------------AYGLA 732 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + K+ + A+ A+ GV + E Sbjct: 733 SQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLY--------------- 777 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ D R +Q + DI+ Sbjct: 778 -----------GRRRYLPDLNSDN---RQRREVAERAA------LNAPIQGTAADIIKVA 817 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666 M N K ++L VHDE+V E + V L M +PL Sbjct: 818 MINVQKALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LSVPLDVS 875 Query: 667 GYEAKRY 673 + + Sbjct: 876 VGTGRSW 882 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 183/652 (28%), Gaps = 133/652 (20%) Query: 39 DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D D + L ++L D H + + G + T+ Sbjct: 359 DGEGGYIDTATLTPDDDAALGEWLADPAKPKALHEAKLAIHDL-RGRGWTLNGVT-SDTA 416 Query: 98 VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + A +L + L E + E + D + ++ Sbjct: 417 LAAYLVRPGQRSFTLDDLSLRYLRRELRAETPE----QQQLSLLDDDDTDVAAAQTAILR 472 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 A + D E R L L+D E + L + G +DL ++ LQ A Sbjct: 473 ARAVIDLADALDAELDRIDSTGL--LTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFA 530 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNIT 271 + + + G + L++ LF + ++ T L Sbjct: 531 DQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDK 589 Query: 272 --QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L + + ++ L +V+ DGR+ T A TGR S QN Sbjct: 590 TGHPFLQHLLAHRDVTRLKVT-VDGLLNSVADDGRIHTTFNQTIA-ATGRLSSTEPNLQN 647 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARV 388 +P A +R + +G +L+ AD + IE R+ Sbjct: 648 IP------------------------IRTDAGRQIRDAFVVGDGYSELMTADYSQIEMRI 683 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A ++ ++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 684 MAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG---------- 733 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 GL + + K+ ++ Sbjct: 734 ----LAYGLS------------------------------AYGLSSQLKISTEDAKVQMD 759 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + ++ GV + E + RR Sbjct: 760 QYFSRFGGVRDYLMAVVEQARKDGYTSTVL--------------------------GRRR 793 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GY 622 ++ R +Q + DI+ M K Sbjct: 794 HLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIEVDKALKEHALKS 844 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + L M +PL+ + + Sbjct: 845 RMLLQVHDELLFEVAAGEREQIEALVRDKMGSAYP--LDVPLEVSVGFGRSW 894 >gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 849 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 90/655 (13%), Positives = 170/655 (25%), Gaps = 156/655 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP--- 89 + +++++ + D+ + L ++ + H+ + IP Sbjct: 330 ISLSYNEDNIFYIDQNRSQDALITINSALFSNGILKIIHD--------TRETRKTIPTIE 381 Query: 90 --SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 +++ + GK + + + Sbjct: 382 KVLGSVDDLMIMSYSLD----------------------TGKHDHSIPNIIAHNLSENVE 419 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 T + + E +++R L + + G +++ + Sbjct: 420 TFSAKTLIAIHEKLKQRLFKEKLFTIYERFDK------PLMKVIFNMEKNGILLNIHKLQ 473 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVDMSEGTLKS 263 +L + Q L+ DI L + L LF G+ L S T Sbjct: 474 ELSDKFQQLIAVLENDIYNLAGEKF-NIASPKQLSDVLFNKMGLNKKKKLKSGSYSTNSV 532 Query: 264 ILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L I IL+ S + L + V DGR+ + TGR S Sbjct: 533 VLEELEIEGVEIASKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTNFS-TTVTATGRLS 591 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IA G K++ AD Sbjct: 592 SSSPNLQNIP------------------------IRSKEGNLIRQTFIAPKGYKIISADY 627 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +A +AFANG+DI+ T + F D EQ Sbjct: 628 SQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRR---------- 677 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ A + + Sbjct: 678 ---KAKSINFGIMYGISQF------------------------------GLAKRLGITIE 704 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + + + + Sbjct: 705 EAAEYINYYFSCYPEIKVYMEKVVSTARQHGY--------------------------VE 738 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKN 620 RR D+ YL R Q + DI+ M + Sbjct: 739 TLFGRRCFVKDINNTIPYLRQFA---ERAAINAPL------QGTAADIIKCAMIQLFDQL 789 Query: 621 GY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 I+L VHDE++ E + + + +M +PL+ E + + Sbjct: 790 KAGKIILQVHDELLVEVENEKVQETAKLMKDVMENIVK--ISIPLEVEVKISDNW 842 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 77/657 (11%), Positives = 168/657 (25%), Gaps = 133/657 (20%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + D L R + + L + L V N+ + + + LGID+ + + Sbjct: 341 GFVIGDGTTWLVSRDAELLKQAPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNVDF 399 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + + + + + + + Sbjct: 400 -DLLLASYLLNTNDNSNDLGQV-ALEHD------------YHEVATDEEVYGKGAKRAIP 445 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDL 203 Q F + + A +L L D E L + + G +++ Sbjct: 446 DDDQTFYTHLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVNS 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + + +++ I + T L LF + ++ ++ T Sbjct: 506 QTLKDMGSKLTERLADIEDQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYST 564 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +L + IL + + L + + S D ++ ++TGR Sbjct: 565 AVDVLEKLADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRYLQT-LTQTGR 623 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G ++ Sbjct: 624 LSSVDPNLQNIP------------------------VRLPEGRLIRKAFVPSHEGWQIFS 659 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMEL 437 +D + +E RVLA I G+ + F NGEDI+ +T + F+ P D ++ + R K + Sbjct: 660 SDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNF 719 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y + + + + + F+++ + + E + Sbjct: 720 GIVYG-----ISDYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVET 774 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + R + + Sbjct: 775 ITHR---------RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADI------------- 812 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 +K + Q + + Sbjct: 813 ---------------IKIAMIRMKEEIKQRQLQA--------------------RMLLQI 837 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P + L +M +PLK E + Sbjct: 838 HD-----------ELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESKVGDTW 881 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 112/667 (16%), Positives = 189/667 (28%), Gaps = 140/667 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTL 84 +T A A D +A P D L +L D + H + + + Sbjct: 363 GDVTALAIAASDGECAYI--AASTATPEDEAALGDWLADASQPKALHEAKWAIHAL-RGR 419 Query: 85 GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 G + T++ A +L + L L G+ ++ D Sbjct: 420 GWTL-GGLTSDTALAAYLVRPGQRSFNLDDLSLRY-LKRELRAETSGQEQLSLL----DD 473 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + D A ++ E + LSD E L + I G + Sbjct: 474 TEQLDAEAAETAMLSAQAVLDLAAALDTELESIESKSLLSDMELPLTIELAQIEATGIAV 533 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256 D + LQ A + ++ + L++ LF + Sbjct: 534 DSAHLHDLQSRFASQVADAANSAYEVI-DKQINLGSPKQLQVVLFEELDMPKTKKTKTGY 592 Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L+ + + L +L ++ + ++ L +AV+ DGR+ T A Sbjct: 593 TTDAEALQGLFDKTGHPFLEH--LLAHRDATRMKVT-VDGLLKAVAEDGRIHTTFNQTVA 649 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P A +R + G Sbjct: 650 -ATGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 684 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE R++A ++G++ I+AF GED++ ++AF PI++V+ E R K Sbjct: 685 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 744 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M GL A Sbjct: 745 AMSYG--------------LAYGLS------------------------------AYGLA 760 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + K+ + A+ A+ GV + E Sbjct: 761 SQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTLY--------------- 805 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ D R +Q + DI+ Sbjct: 806 -----------GRRRYLPDLNSDN---RQRREVAERAA------LNAPIQGTAADIIKVA 845 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666 M N K ++L VHDE+V E + V L M +PL Sbjct: 846 MINVQKALAEAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIE--LSVPLDVS 903 Query: 667 GYEAKRY 673 + + Sbjct: 904 VGTGRSW 910 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 88/497 (17%), Positives = 137/497 (27%), Gaps = 105/497 (21%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E L + + G+ +D + + + IV+ + Sbjct: 475 YEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYAGYDF-NLNSPKQ 533 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L LF+ G+ ++ T +L IL S ++ L + Sbjct: 534 LGDVLFVKLGLPAKKKTKTGYSTNVDVLEALRPQHPIIGEILEYRKLSKLKSTYVDGLLK 593 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V DGR+R T Q +RTGR S QN+P Sbjct: 594 VVGPDGRVRSTFQQTE-TRTGRISSTEPNLQNIP------------------------IR 628 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R A G KLV AD + IE RVLA +A + I AF +GEDI+ TT A+ F Sbjct: 629 TEEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTAAQVF 688 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 P V+ R+ K + + Y G + + + + S + Sbjct: 689 GMPGGTVTPLMRSRAKAVNFGIVYGIG-----AFSLSQDIGVTVSEADSYIKSYLAHYAG 743 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + E L G R + K V + Sbjct: 744 VRKYMEDTIAFARENGYVKTLFGR---------RRYLPELAASNKVTQAFGERVARNTPI 794 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 R R G + Sbjct: 795 QGTAADIIKI----------------------------------AMVRVFERLRREGLR- 819 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656 +R IL VHDE++ E PD + M Sbjct: 820 --------ARLIL----------------QVHDELLVEAPDDEIDRARAILKEEMEHAI- 854 Query: 657 WAKGLPLKAEGYEAKRY 673 A +PL+A+ + Sbjct: 855 -ALKVPLEADTNVGDNW 870 >gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] Length = 875 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 71/505 (14%), Positives = 143/505 (28%), Gaps = 118/505 (23%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D + L + + G +D D + +L E +L I+++ + Sbjct: 474 YFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPK 532 Query: 240 ALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + G+ + T ++L + L+L + ++ L Sbjct: 533 QLGHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALP 592 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ + TGR S QN+P Sbjct: 593 RMRADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIP------------------------V 627 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R C + G K + AD + IE R+LA ++ ++ + AF +G D + T ++ Sbjct: 628 RTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F P++ V+ E R+ Sbjct: 688 VFGLPVEDVTPELRSRA------------------------------------------- 704 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + Q + + + + + + + GV Sbjct: 705 -KAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAE 763 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 R+ ++K + T R Sbjct: 764 TMF--------------------------GRKRHIPELKAANA---TQRGFGERTAM--- 791 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + +Q + DI+ M + ++L VHDE+ P+ + + Sbjct: 792 ---NHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVK 848 Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PL + A + Sbjct: 849 DVMEHIVD--LRVPLDVDVSYADNW 871 >gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] Length = 883 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 85/667 (12%), Positives = 181/667 (27%), Gaps = 145/667 (21%) Query: 28 AVITLCAYAWDDEPVKLWD-RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + + + D T P L + L D+ + + + +G+ Sbjct: 337 AQYAGFSVKIK-QKIYVCDDVTLLQEAP--LKKILEDKNIAKQVFDLK------RNYVGL 387 Query: 87 ---DIPSKRW-ICTSVLARTNGLPSSLKN---ACLALNFSE-HLTKMEEGKALIARFCKG 138 DI + + ++ ++ + S ++ GK Sbjct: 388 QRLDITLSNVTDDIMLASYIADSENNARDIGVLANSYQESYVQSDEIIYGKGKKQ-HSVD 446 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + T+ + + K E + L E + ++ + G Sbjct: 447 VDTLYAHMATKVDVLD-----KLKAKIMPELQQHEQVHLYKNI--EIPIAVILAKMEIAG 499 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 ++ ++K++ + L I +L + L + LF + ++ Sbjct: 500 IKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTK 558 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ S +N L + + +DG++ + Sbjct: 559 TGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LT 617 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGK 374 TGR S QN+P +R + Sbjct: 618 TTGRLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDS 653 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGK 433 L D + +E RVLA ++ E ++AF G DI+ T K F D+V+ R K Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + G+ ++N+ Sbjct: 714 AVNF--------------GIVYGISDYGLAKNL--------------------------- 732 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + ++ + K + + Sbjct: 733 ---GISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-------------- 775 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR + D+ + + R + +Q + DI+ Sbjct: 776 ------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIA 814 Query: 614 MKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M K ++L +HDE++ + P + L +M + +PL A+ Sbjct: 815 MIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKIMQQAAQ--LDVPLIAD 872 Query: 667 GYEAKRY 673 + Sbjct: 873 ANWGHNW 879 >gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] Length = 875 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 72/505 (14%), Positives = 143/505 (28%), Gaps = 118/505 (23%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D + L + + G +D D + +L E +L I+++ + Sbjct: 474 YFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPK 532 Query: 240 ALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + G+ + T ++L + L+L + ++ L Sbjct: 533 QLGHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALP 592 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ + TGR S QN+P Sbjct: 593 RMRADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIP------------------------V 627 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R C + G K + AD + IE R+LA ++ ++ + AF +G D + T ++ Sbjct: 628 RTEFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F P++ VS E R+ Sbjct: 688 VFGLPVEDVSPELRSRA------------------------------------------- 704 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + Q + + + + + + + GV Sbjct: 705 -KAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAE 763 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 R+ ++K + T R Sbjct: 764 TMF--------------------------GRKRHIPELKAANA---TQRGFGERTAM--- 791 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + +Q + DI+ M + ++L VHDE+ P+ + + Sbjct: 792 ---NHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVK 848 Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PL + A + Sbjct: 849 DVMEHIVD--LRVPLDVDVSYADNW 871 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 94/655 (14%), Positives = 191/655 (29%), Gaps = 121/655 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I ++ + +T+ + +L + + ++ + K GID Sbjct: 344 ADIQGFGIQNENG--CYFIQTDIALASEAFKAWLANGEMRKRTFDAKRAIVALKW-KGID 400 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + + K+ + KG+ + P Sbjct: 401 IQGIDF-DLLIAAYLLDP----ADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELE 455 Query: 148 TRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A H A ++ Y + + ++ ++ E L + + +G ++D + + Sbjct: 456 VVAEH-VARKVHVLYDVKQTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERL 514 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + E +A K+++++I KL + L + LF + ++ ++ T Sbjct: 515 RNMGEELAGRLKEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSAD 573 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +L IL+ + L + V D ++ ++TGR S Sbjct: 574 VLDKLMNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQ-VLTQTGRLSS 632 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R + G + AD Sbjct: 633 TDPNLQNIP------------------------IRLEEGRKIRQAFVPSEEGWIMYAADY 668 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA IA + ++AF + DI+ T F D+V+ R K + + Sbjct: 669 SQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIV- 727 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G+ SQN + Sbjct: 728 -------------YGISDYGLSQN------------------------------LGITRK 744 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + GV + D+ + + R +P + R Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYV--ATLLNRRRYIPEITSRNFNL----- 797 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + +NT + + + G Sbjct: 798 ----------RSFAERTAMNTPIQGSAADIIKIAMIIMAD--------------RLDEEG 833 Query: 622 --YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P + L +M A +PLK + + Sbjct: 834 LQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VPLKVDYSYGPTW 886 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 90/659 (13%), Positives = 173/659 (26%), Gaps = 136/659 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A + E + E S S L Q+L D + H++ G + Sbjct: 348 IALSATPESAVVVTLDELSDADSVALRQWLMDPHYPKIVHSAKEAWHALHSFSG-GVKGV 406 Query: 92 RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T + A L++ + + + + Sbjct: 407 -IADTELAAYLAFPDQRSYGLEDLSIRYVSRDIT-------PVAHQAQGSLDLGLDDTDD 458 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + ++A + E L ++ + G +DL+ + Sbjct: 459 ALRALANRAAVLPQLAQALDAELSDRSLTALYQEMELPLTVVLAQMEHVGVAVDLEQLRS 518 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSIL 265 L A + + + + G + L+ LF + T + L Sbjct: 519 LDAFFAHQGSEAQKAAFEAI-GRQVNLGSPKQLQEVLFDQLDMPKTKKIKTGYTTDAASL 577 Query: 266 SHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + + L+ R ++ + L ++V+ DGR+ T Q A TGR S Sbjct: 578 ADLFVKTGHPFLQHLLEYRDSTKLRQT--VEGLLKSVADDGRVHTTFQQTVA-ATGRLSS 634 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADL 381 QN+P +R + G L+ AD Sbjct: 635 TDPNLQNIP------------------------IRTETGRRIRQGFVVGEGLDTLLTADY 670 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++ +D I AF GED++ A+ F ID+V+ + R+ K M L Sbjct: 671 SQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGVSIDEVTPQMRSKVKAMSYGL-- 728 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GL + + + Sbjct: 729 ------------AYGLS------------------------------AFGLSKQLNISVG 746 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + GV + + Sbjct: 747 EASTLMDDYFTRFGGVRDYLTSVVARARTTGYTETIM----------------------- 783 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 RR D+ D R +Q + D++ + M Sbjct: 784 ---GRRRYLPDLTSDN---RQRRENAERVA------LNAPIQGSAADVIKQAMLGVDAAF 831 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L +HDE++ E + M +PL + + Sbjct: 832 RSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMAGAMQ--LSVPLAVSVGTGQNW 888 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 90/591 (15%), Positives = 164/591 (27%), Gaps = 127/591 (21%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + R S++A + L RF SI S D Sbjct: 400 KTARVHDMSLIAYLLDPTR------TNYGYLY----------LTERFSVPSIASGSVDVE 443 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + V+A E RE L E L + G ID + + + Sbjct: 444 CVSMVKALLAMNEAACESAR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAE 499 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +E ++ ++I +L G + L + LF + ++ ++ T +L Sbjct: 500 TTTRFKEELAQVQQEIYELA-GENFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVL 558 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324 + IL + + L+ ++ R+ T + TGR S Sbjct: 559 DMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMV-TATGRLSSSD 617 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R+ G LV AD + Sbjct: 618 PNLQNIP------------------------VRTEKGREIRALFYPGAGYDTLVSADYSQ 653 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++G++ IKAF G+DI+ T A+ D V+ E+R+ K + + Y Sbjct: 654 IELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKAINFGIIYG- 712 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + F + + + + M + E + G Sbjct: 713 ----ISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQR 768 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 EL + + Sbjct: 769 EL---------PDINSRNFNRRSFAERTAMNTPIQGTAADIIKL---------------- 803 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 +N +L + Sbjct: 804 ---------------AMNQMEQKLEEQNF----------------------------KSR 820 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E ++ ++ L M +PL + + A+ + Sbjct: 821 LLLQVHDELVLEVVNSELEAIEELLRNTMQSVVE--LQVPLIVDVHHAENW 869 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 257 bits (656), Expect = 6e-66, Method: Composition-based stats. Identities = 97/631 (15%), Positives = 173/631 (27%), Gaps = 133/631 (21%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLAL 116 +L D V H+S + F G ++ T + A L + L Sbjct: 380 WLADAERPKVLHDSKPAVLAFAAH-GWELHGIA-RDTQIAAYLARPDQRSYDLTDLALRY 437 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E + G + +QA D E +R+ + Sbjct: 438 LHRELRV-DAPETGQLTLDGLGDEGV----AEQNLMLQARATLDLADAIDAELSRDGEQS 492 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 ++ E L + T+ G D D + +L+ A E K + ++ + Sbjct: 493 ARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREF-NLG 551 Query: 237 QTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLA---SSGSAIL 290 L+ LF G+ T L L + + Sbjct: 552 SPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKST- 610 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L ++VS DGR+ T A TGR S QN+P Sbjct: 611 -VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP------------------- 649 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G L+ AD + IE R++A ++ +D I+AF +G D + Sbjct: 650 -----IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFH 704 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T + F + V+ +QR K M GL Sbjct: 705 AATASSVFTVEVGDVTADQRRKIKAMNY--------------GLAYGLS----------- 739 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + + A GV +++ Sbjct: 740 -------------------AFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARAR 780 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR D+ D ++ Sbjct: 781 QDGYTSTIL--------------------------GRRRYLPDLVSDNRQRREMAERM-- 812 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + ++L VHDE+V E + Sbjct: 813 -------ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPGERET 865 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M + +PL+ E + Sbjct: 866 LEALVRKQMGEAYP--LSVPLEVSVGEGHDW 894 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 88/538 (16%), Positives = 163/538 (30%), Gaps = 111/538 (20%) Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 PY+ + L G + E RL+ + E L + ++ G +D Sbjct: 412 PYEEDMGDTADIAALPGLCDALANKLEAEGLTRLME--EIELPLVEVLASMEHTGVLVDQ 469 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSE-- 258 D V + + ++ E ++L+E+I G + L LF I ++ Sbjct: 470 DGVRRFGDALSGEIRQLEEEIY-TLAGKQFNIASPKQLGQVLFEDLEIPHPQGKKKTKTG 528 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T +L LIL + + L + V+ DGR+ + +R Sbjct: 529 SFSTNAEVLEKLRGAYPIVSLILRYRQLTKLNSTYVAGLLKTVAPDGRIHTCFKQTE-TR 587 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P +R +A G+ L Sbjct: 588 TGRISSTEPNMQNIP------------------------VRTELGKEMRKFFVAPRGRIL 623 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R+LA + + +AF +G DI+ +T A+ F P + V+ + R+ K + Sbjct: 624 LDADYSQIELRILANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTPQMRSAAKAVN 683 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y G + + + + E++ + E + + Sbjct: 684 FGIIYGIG-----AYSLSQDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAERTGFVS 738 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 L G R + + K + + Sbjct: 739 TLFGR---------RREVPELKSHNK-IQQAA---------------------------- 760 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR+ + ++ R Y E Sbjct: 761 --------GRRIAMNTP---IQGTAADIIKIAMIRVYRRLARE----------------- 792 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + ++L VHDE++ E + M W +PL AE + + + Sbjct: 793 --QLDARLILQVHDELIVEAAVQDADRAAVILREEMEHA--WDMAVPLTAEVGKGESW 846 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 92/594 (15%), Positives = 169/594 (28%), Gaps = 151/594 (25%) Query: 94 ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T++ A SL C EG ++ + + + +C + Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVP-------EGNSIQEKSITVAALNDILNCKIS 421 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 A L +D E L + + G ID D + Sbjct: 422 ETGSAAVL----------------------TDIEIPLATVLVAMEREGVSIDADGIKAFG 459 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 + + ++ +K+ +I + + L LF + ++ T +L Sbjct: 460 KEVCEKAEKISREIYEYAGYEF-NIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLES 518 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LI A + + L + V DGR+ T + +RTGR S Sbjct: 519 LMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDGRIHSTFKQTE-TRTGRISSAEPNI 577 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R A +G LV AD + IE R Sbjct: 578 QNIP------------------------VRTPLGREMRRFFTAKDGYLLVDADYSQIELR 613 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA I+G++ KAF +G DI+ T ++ FN PI+ V+ + R+ K + Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ + + Sbjct: 664 ----GIVYGIG------------------------------AFSLSKDIGVSVPKASEYI 689 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 +++ +K+ G+ + RR Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRR------------------------- 724 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKN------ 620 Y+ ++ + +G ++ +Q + DI+ M Sbjct: 725 -----------YIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLEESGL 773 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + V L M +P+ + K + Sbjct: 774 DARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 84/661 (12%), Positives = 183/661 (27%), Gaps = 145/661 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKK 82 A + D + ++ + LL L D+ + N F+ + Sbjct: 339 ADFVGFSLKMGDN----IYVSNDVSLLTKQPLLSLLEDQAIAK---NV-FDLKRTMVGLY 390 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACL------ALNFSEHLTKMEEGKALIARFC 136 LGI + + + + ++ + + I + Sbjct: 391 RLGIKSHNMNY-DMLLASYLVNNENNSNDLGEICQLYNYYDLQPD----------IDIYG 439 Query: 137 KGSIDSPPYDCTRANHV--QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 KG + P + NH+ + + + T L E + + + Sbjct: 440 KGKKAAIPEETVFFNHLAGKVLAIEVLKPTLLKKLTEHEQDDLYETI--EMPVANVLAKM 497 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G + D +++L AQ +L+ DI L G + L LF G+ + Sbjct: 498 EITGLKTDASTLVQLGNDFAQRLTELEADIY-LEAGERFNINSPKQLGQILFEKLGLPPI 556 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T +L +L+ + + L + + DGR+ Q Sbjct: 557 KKTKTGYSTSVEVLEQLKEQSPIVQKVLDYRQIAKIQSTYVKGLLDVIQPDGRVHTRYQQ 616 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P +R + S Sbjct: 617 T-LTATGRLSSVDPNLQNIP------------------------VRLEEGKKIRKAFVPS 651 Query: 372 --NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 +G D + +E RVLA ++G++ +AF G DI+ T K F+ ++V+ Sbjct: 652 NSDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPNEVTPNM 710 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + + + + + Sbjct: 711 RRHAKAVNFGIVYG-----ISDYGLSKNLGISRKQAKEFIDNYFEQYPKIKDYMDKEINF 765 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVP 547 E + ++ R + ++ + A + + Sbjct: 766 ARENGYVETIMHR---------RRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKIA 816 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + M++ ++H+ Sbjct: 817 MINMQKKLDELHLKT--------------------------------------------- 831 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + + ++ + P ++ + +M +PL A+ Sbjct: 832 ----KMLIQVHDE-----------LIFDVPADELETIKKVVPEVMQNAVQ--LDVPLVAD 874 Query: 667 G 667 Sbjct: 875 S 875 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 92/594 (15%), Positives = 169/594 (28%), Gaps = 151/594 (25%) Query: 94 ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T++ A SL C EG ++ + + + +C + Sbjct: 369 FDTTLAAYLADPDSNDYSLSRLCAQYGVP-------EGNSIQEKSITVAALNDILNCKIS 421 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 A L +D E L + + G ID D + Sbjct: 422 ETGSAAVL----------------------TDIEIPLATVLVAMEREGVSIDADGIKAFG 459 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 + + ++ +K+ +I + + L LF + ++ T +L Sbjct: 460 KEVCEKAEKISREIYEYAGYEF-NIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLES 518 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LI A + + L + V DGR+ T + +RTGR S Sbjct: 519 LMDKHPIVPLITEYRALTKLQNTYVTGLLKVVGEDGRIHSTFKQTE-TRTGRISSAEPNI 577 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P +R A +G LV AD + IE R Sbjct: 578 QNIP------------------------VRTPLGREMRRFFTAKDGCLLVDADYSQIELR 613 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA I+G++ KAF +G DI+ T ++ FN PI+ V+ + R+ K + Sbjct: 614 VLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNF---------- 663 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ + + Sbjct: 664 ----GIVYGIG------------------------------AFSLSKDIGVSVPKASEYI 689 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 +++ +K+ G+ + RR Sbjct: 690 RSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRR------------------------- 724 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKN------ 620 Y+ ++ + +G ++ +Q + DI+ M Sbjct: 725 -----------YIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKESGL 773 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + V L M +P+ + K + Sbjct: 774 DARLILQVHDELIVEAKEDCAEKVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 98/632 (15%), Positives = 180/632 (28%), Gaps = 156/632 (24%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNA 112 +L Y D F+ G++ + T++ A SL Sbjct: 336 ELKAY-ADSDSTKY----TFDIKDTLTVSGLEKLNNNKFDTTLAAYLVDPDSNDYSLSRL 390 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C EG ++ + + + +C + A L Sbjct: 391 CAQYGVP-------EGNSIQEKSITVAALNDILNCKISETGSAAVL-------------- 429 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +D E L + + G ID D + + + ++ +K+ +I + Sbjct: 430 --------TDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF 481 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + ++ T +L LI A + Sbjct: 482 -NIGSPKQLGSVLFEKLALPSAKKTKTGYSTNADVLESLMDKHPIVPLITEYRALTKLQN 540 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + V DGR+ T + +RTGR S QN+P Sbjct: 541 TYVTGLLKVVGEDGRIHSTFKQTE-TRTGRISSAEPNIQNIP------------------ 581 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ Sbjct: 582 ------VRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIH 635 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T ++ FN PI+ V+ + R+ K + G+ Sbjct: 636 TVTASQVFNQPIEWVTPDLRSKAKAVNF--------------GIVYGIG----------- 670 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + +++ +K+ G+ Q + Sbjct: 671 -------------------AFSLSKDIGVSVPKASEYIRSYLSKYSGIAQYMELTVAKAK 711 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 RR Y+ ++ Sbjct: 712 RDGYVETMFGRRR------------------------------------YIKELAAKNKN 735 Query: 590 ERTYGGKLT-ENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 + +G ++ +Q + DI+ M ++L VHDE++ E + Sbjct: 736 LQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAE 795 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V L M +P+ + K + Sbjct: 796 KVALLLKEEMENAVK--LTVPMTVDVNIGKTW 825 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 91/608 (14%), Positives = 169/608 (27%), Gaps = 146/608 (24%) Query: 75 FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134 ++ F +G P W + + A + A + F + + Sbjct: 389 YDLKSFWHKIGAKTPVAAW-DSQLAAYVLKAGDTSDFAKIYTRFMADVLPDLASPSQ--- 444 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 Y+ V +L L + ++ Sbjct: 445 ---------LYNAQLNFATTLKSQLQTVQGEKVYQELDL------------PLARVLLSM 483 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G RID DL+ K E +A++ ++++ I + G + L + LF G+ Sbjct: 484 ERLGVRIDKDLLAKQSEELAKDIAEIEKQIHEAA-GESFNVGSPKQLGVILFEKLGLPAG 542 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 ++ T + +L L+L S ++ L + D R+ + Sbjct: 543 KKTKTGYSTDEEVLLGLEHP--IAKLVLQWREMSKLKSTYVDALPTMIDPKDERVHTSFN 600 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P VR IA Sbjct: 601 QA-LTTTGRLSSTQPNLQNIP------------------------IRTARGQQVRKAFIA 635 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + KL+ D + IE R+LA I+ + KAFA DI+ T A+ F P+ V+ E R Sbjct: 636 APRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKDVTAEHRR 695 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 +A + + Sbjct: 696 SA--------------------------------------------KAVNFGIAYGQGAF 711 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A + T + + + + + + V + + Sbjct: 712 GLAENLGISRTEAKDIIERYFNRFKNVREYIDGTIKMAHEKGY----------------- 754 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + RR +++ L R +Q + D++ Sbjct: 755 ---------VETLFGRRRYIDELQSKNMALK---KFGERAAINAP------IQGTASDLV 796 Query: 611 CEGMKNA-TKNGYDIVLTVHDEIVSETPDTPYFSVGT----LCSLMTKNPSWAKGLPLKA 665 + M K ++L VHDE++ E ++ L S+M +PLK Sbjct: 797 KKAMIEVFEKVPVRMLLQVHDELIFE---DFEENLQKHSPQLVSIMENVMK--LKVPLKV 851 Query: 666 EGYEAKRY 673 + Sbjct: 852 NYAIGNNW 859 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 96/648 (14%), Positives = 166/648 (25%), Gaps = 138/648 (21%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D T+ ++ D V HN+ + + G + T++ A Sbjct: 371 WLDPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEH-GWQLEGVTM-DTALAAYL 428 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L +A + + Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPA--AAADGQLAFGADDRAEQDALMAQARAVLDLGDA 486 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F K A L D E +L + G D + +++ A + Sbjct: 487 FTTRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQ 538 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273 + ++ + L+ LF G+ ++ + Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHE 597 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 598 LPVLMLRHREQAKLRVT-VEGLIKTIATDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE RV+A + Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF +GED++ T ++ F D V E R K M L Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------- 738 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GL SQ + ++ + Sbjct: 739 -AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYFE 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV + E + RR D Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626 + D A ++ +Q + DI+ M K ++L Sbjct: 802 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKALTEAGLTSRMLL 852 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 VHDEIV E V + M PL K + Sbjct: 853 QVHDEIVLEIAKGERKQVEEILRHEMANAVELRA--PLDVSVGVGKDW 898 >gi|157265423|ref|YP_001467981.1| DNA polymerase I [Thermus phage P74-26] gi|156905318|gb|ABU96961.1| DNA polymerase I [Thermus phage P74-26] Length = 728 Score = 256 bits (655), Expect = 7e-66, Method: Composition-based stats. Identities = 108/779 (13%), Positives = 202/779 (25%), Gaps = 200/779 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-------- 54 ++ +D ET P Y + A A + Q + Sbjct: 24 RVALDTETYGSNPFN-----LYLPDFRLVGVAIATSPTEAWYFPVDHQDFLLRYQPANLP 78 Query: 55 -SDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----- 107 + Q L V HN+ ++R + TL I + T V Sbjct: 79 REAVRQAVLEALKRPVVYHNAAYDRRVLAVTLDIPLDQTYGDDTMVALHLVDENHPLGLK 138 Query: 108 -------SLKNA---------------------CLALNFSEHLTK--------------- 124 L+ H K Sbjct: 139 EWAKTLLGLEEVNADIEPPELTDEDQVEAVSKNGRRYKKKVHKLKPDWLQRLKDAFLAVH 198 Query: 125 -----MEEGKALIARFCKGSIDSPPYDCT----RANHVQAWQLFGEYCKRDVEATRELFK 175 L+ R + + T + + Y D T L++ Sbjct: 199 NGGVSYGALYKLLNRAFQQLKNRGVVSYTGSFPNDFRLFPVDIAAIYALDDAMNTLALWE 258 Query: 176 R------LIPLS-----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER------- 217 L P + E + + RG +D + + +++E I Sbjct: 259 HVEVFFELHPKLHTLYREIELPVNDVMTRATHRGVLVDKEELRRIKETIQARIEEKAQEA 318 Query: 218 KKLDEDIVKLTDGIIRSS-RQTYALRMYLFLITGIDL--------VDMSEGTLKSIL--- 265 ++L + ++ + L L+ + G + S+ + +L Sbjct: 319 QELLKALIGSKASEFTNPLNSPQQLATILYDLLGYPVVETTPNGAPSTSKTAIAKLLTLS 378 Query: 266 -SHSNITQLAKDLILNRLA---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 LAK + + A +++ E V GRL G + +GR S Sbjct: 379 PKDKKKAPLAKAFLEAKQAHEGLKKLLSTYTDSILEEVDPQGRLHTNFNTVG-TVSGRMS 437 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QNLPR E +Q +R +A G V AD Sbjct: 438 SSNPNLQNLPRLLPEEVAEKPYLQ---------------GIDIRKAFVADPGYIFVSADY 482 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA-------KAFNTPIDKVSKEQRAIGKV 434 A +E V A ++G+ G D++ T + + K+ R KV Sbjct: 483 ASMELVVCAAVSGDPTMRDLLNQGRDLHAYTARYAFKVGLDLDDKAFKEQYKDYRQKAKV 542 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + AL Y G + FE + ++ + + E Sbjct: 543 VNFALIYGGT-----EFTLIKNFGFSEEEAKQLIQGYFEAYPVVKTWMEEVYRELEEKGF 597 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + DL + + ++ + Sbjct: 598 VE--------YPIYGYIKR--------MDLPQALRKLPKDKWPLVLN------------- 628 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 P +R+ Y+ ++ ++Q S ++ + + Sbjct: 629 ------NDPDARKQYYASLRSCQ---------------------NALIQGFSAFVVKDAI 661 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666 + +++ VHDEIV + V + M + G+ LKAE Sbjct: 662 VQMQRAFEAEGLDAQVIIQVHDEIVVLAKEEHAERVAQIMVEKMEREV---NGVLLKAE 717 >gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 865 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 87/658 (13%), Positives = 171/658 (25%), Gaps = 134/658 (20%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK--TL 84 A + A + + + + P+ LQYL + V ++ F Sbjct: 327 DATLYGFALS-KENKNEYITLEDARKDPA-FLQYLATKNDKAV-----YDAKNFYHACHK 379 Query: 85 GIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSE-HLTKMEEGKALIARFCKGSIDS 142 I + A S + +F + + GK + + S Sbjct: 380 NNLIAVDVNFDIMLAAFLVDQTISDYEKLAEKYHFDQSIHKEDIYGKKGKPKLIDFAQQS 439 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + +QA L+ D K L E L + + G D Sbjct: 440 ------KYAMLQAENLYSIVALLDETLQEMEMKDLFDTI--EMPLTRVLYAMEKEGVYCD 491 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 ++ K+ + + L I ++ + L L+ G+ T Sbjct: 492 KAVLQKIADETEAKINALSLQIYEIAGMEF-NINSPKQLASVLYDELGLKAGKKR-STAA 549 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L L+L L++ + +DG++ ++TGR S Sbjct: 550 DVLEKLVHVHPIIPLLLEHRKYQKIYSTYAIGLAKHILADGKIHTLFNQIQ-TQTGRLSS 608 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+ +R +AS G L+ AD + Sbjct: 609 SEPNLQNI------------------------SVRNEEGKGIRKAFVASEGHVLLSADYS 644 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A E+ I AF + DI+ T + F+ D+V R K + Sbjct: 645 QIELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIFDVAHDEVDANMRRSAKTVN------ 698 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G S+ + Sbjct: 699 --------FGIVYGQSDFGLSEQ------------------------------LGISRKE 720 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + A + + + Sbjct: 721 AHTFIEKYFASYPKIKTFMDATIAYCEEHGYVKTLYN----------------------- 757 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR ++ + + +Q + D++ M + + Sbjct: 758 ---RRRYIKEIADKNYMMREFGKRA---------AMNAPIQGSAADLIKMAMIHIYQKMQ 805 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L +HDE++ + + + + M +PL A+ K + Sbjct: 806 EEKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNVMK--LKVPLIAQANIGKSW 861 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 256 bits (654), Expect = 1e-65, Method: Composition-based stats. Identities = 71/505 (14%), Positives = 143/505 (28%), Gaps = 118/505 (23%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D + L + + G +D D + +L E +L I+++ + Sbjct: 474 YFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPK 532 Query: 240 ALRMYLFLITGIDLVDM---SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + G+ + T ++L + L+L + ++ L Sbjct: 533 QLAHILFEVLGLRTLRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTYIDALP 592 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ + + TGR S QN+P Sbjct: 593 RMRADDGRVHTSFN-ETVTTTGRLSSSEPNLQNIP------------------------V 627 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R C + G + AD + IE R+LA ++ ++ + AF +G D + T ++ Sbjct: 628 RTEFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F P++ VS E R+ Sbjct: 688 VFGLPVEDVSPELRSRA------------------------------------------- 704 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + Q + + + + + + + GV Sbjct: 705 -KAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAE 763 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 R+ ++K + T R Sbjct: 764 TMF--------------------------GRKRHIPELKAANA---TQRGFGERTAM--- 791 Query: 596 KLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + +Q + DI+ M + ++L VHDE+ P+ + + Sbjct: 792 ---NHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVK 848 Query: 650 -LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PL + A + Sbjct: 849 DVMEHIVD--LRVPLDVDVSYADNW 871 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 87/635 (13%), Positives = 175/635 (27%), Gaps = 151/635 (23%) Query: 62 RDETVMCVA-HNSLFERILFKKT-----LGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 D + +A +N LFK +D + T ++A P S+++ Sbjct: 414 EDAPKLKIASYNIKRIWHLFKNNTELDLYDLDTNKFLFYDTELMAYLLEPTEAPHSIEDM 473 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + + + D + L + Sbjct: 474 ------------------MNRYYGQFDLTPYGQDWQAVC-ERGAILLDLISPLEDILQER 514 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L E L + + RG ++D ++ +++ I ++ I ++ Sbjct: 515 NQWQLYKNI--ELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKIFEIAGEEF 572 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + +V ++ T L + L+L+ Sbjct: 573 -NLNSPKQLGYILFEKLQLPVVKKTKTGYSTDAKTLETLSHDYEICKLLLDYRQLHKLKT 631 Query: 290 LKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L L + +S G++ T + TGR S QN+P Sbjct: 632 TYLVGLKDLISKTTGKIHTTYNQT-ITATGRLSSTDPNLQNIP----------------- 673 Query: 349 RGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I ++ + + AD + IE R+LA ++ + I+AF +D Sbjct: 674 -------IKLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQD 726 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 I+ T A+ F +V++E R+ K + + Y GL Sbjct: 727 IHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGIS---------DYGLS--------- 768 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + GV + + Sbjct: 769 --------------------------RQLGISRKQAKTYIDNYLTRFSGVKEYMDQIVNQ 802 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR D+ + +A Sbjct: 803 AKMNGYVETLYN--------------------------RRRNLPDISHRNFNIRSAA--- 833 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD--------IVLTVHDEIVSETPDT 639 R +Q + DI+ + M K ++L VHDE++ E Sbjct: 834 ERTAI------NTPIQGTAADIIKDAMVKVEKELEKQDLLDKAALLLQVHDELILEINKE 887 Query: 640 PYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V + +M +PL + + Sbjct: 888 VLSDVATKVKEIMENIIE--LKVPLTVDLKTGPNW 920 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 89/666 (13%), Positives = 174/666 (26%), Gaps = 141/666 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + + +E T +L + H+ K G + Sbjct: 362 DVHGIGLS-SEESAAFIPLTGLDEAAEQVLASWLKGSAPKAVHDLK---SALKALSGRGL 417 Query: 89 PSKRW-ICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 TS+ A L + L E + K Sbjct: 418 DLDGVVDDTSISAYLIQPERRNYDLADLS--LYHLETPMTVSASKDAGQLDLG----LEG 471 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 D + ++A+ ++L+ E L + + G + + Sbjct: 472 DDGAQEAVLRAFATQKLSSFFAPILLERNAEQLLTGL--ELPLARVLSGMELAGVAVSKE 529 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + L + + + + + + L+ LF G+ + T Sbjct: 530 TLDTLMADFGKTIETAQTEAYAIIGHEV-NLGSPKQLQTVLFDELGMPKTKKIKTGFSTD 588 Query: 262 KSILSHS--NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 L+ + ++ + L +++ SD R+ T A TGR Sbjct: 589 AEALADLTTKHPHPFLLQLQAYRDATKLRQT-VEGLIKSIGSDTRVHTTYAQNVA-ATGR 646 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-----ASNGK 374 S QN+P +R + + + Sbjct: 647 LSSNNPNLQNIP------------------------IRSEEGRRIRGAFVVGQKSTKSYE 682 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R++A ++G++ I+AF +GED++ + FN +V+ R+ K Sbjct: 683 TLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGSHIFNVEPQEVTSAMRSKVKA 742 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 M L Y + L+ Sbjct: 743 MSYGLVYG-----LSSFGLSKQLN------------------------------------ 761 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + K + + V + + E Sbjct: 762 ---ISVDEARTLMKDYFDRFGAVRDYLRGVVEQAR------------------------- 793 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 D SRR ++ D L + + +Q + DI+ M Sbjct: 794 -LDGFTETIESRRRYLPELTSDNRQLREMSERA---------ALNAPIQGSAADIIKRAM 843 Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 ++L VHDE+V E + V L + M + +PL + Sbjct: 844 LGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQM--AVAANLTVPLDVQV 901 Query: 668 YEAKRY 673 K + Sbjct: 902 GIGKSW 907 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 108/665 (16%), Positives = 182/665 (27%), Gaps = 142/665 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAM-PSDLLQY---LRDETVMCVAHNSLFERILFKKTLGI 86 L A A D M P D+ L D V H + + + Sbjct: 355 WLVAIAGADGHGAAI---RTETMTPEDVRALDGWLADPAVPKAFHEAKWATHALRGGGFA 411 Query: 87 DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 +I T + A +L + L + + K L D Sbjct: 412 EIAGVT-TDTGLAAYIARPGQRSFNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGED-- 468 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + +A + D + L+ E L + + + G +D Sbjct: 469 --KEADDSITEAAAIRELGGALDDVLDKAGSADLLRT--MELPLTFVLARMEEAGIAVDQ 524 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------- 256 D + L A K+ E + I + L++ LF G+ Sbjct: 525 DGLAGLHADFAARVKQAAESAYSVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTKTGHTT 583 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 L+ + + L +L ++ L +A+ DGR+ T + A Sbjct: 584 DADALQWLFEKTEHPFLL--YLLEHRDATRLMTT-AQGLIKAIGPDGRIHTTFRQDVA-A 639 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P + +R + G + Sbjct: 640 TGRLSSTDPNLQNIP------------------------VRTDEARRIRGVFVVGEGHEA 675 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G+D I+AF GED++ ++AF PID+V E R K M Sbjct: 676 LMTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAM 735 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 GL A + Sbjct: 736 SYG--------------LAYGLS------------------------------AFGLASQ 751 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + G + A+ A+ GV + E Sbjct: 752 LGVSGEEAKAQMDAYFARFGGVRDYLHAVVEEARRKGYTETLF----------------- 794 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ D + +Q + DI+ M Sbjct: 795 ---------GRRRYLPDLTSDNQQQRAVAERA---------ALNAPIQGSAADIIKVAMI 836 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + + ++L VHDE+V E D + L M +P+ Sbjct: 837 HVAEALAEREMRSRMLLQVHDELVLEVADGEREELAALVSEQMGSAIELL--VPMDVSVG 894 Query: 669 EAKRY 673 + Sbjct: 895 FGANW 899 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 88/600 (14%), Positives = 160/600 (26%), Gaps = 137/600 (22%) Query: 94 ICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 V A ++ L S GK D D Sbjct: 424 FDLQVAAYLLDPLSSSYPTEDIARDQLALSIPSYSEFFGKKK--------ADQIWEDPEE 475 Query: 150 ANHVQAWQLFGEY------CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 H + + Y K + + L + E L + G ++ Sbjct: 476 VEHRMHYACYQAYVASRAPQKLLKRLEEQGMRALYE--EVELPLVYTLYDMETAGIAVEK 533 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGT 260 + + + + +L+E I + G + L LF G+ T Sbjct: 534 EALKSYGDQLVGRINELEEGIYREA-GETFNINSPKQLGEVLFGQLGLPGARKTKTGYST 592 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + +L + + L++ ++ DGR+ + Q + TGR Sbjct: 593 AADVLDPLAVNYQIVRDVLEFRQLTKLKSTYADGLAKVIADDGRIHSSFQQTV-TATGRL 651 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R A G V +D Sbjct: 652 SSTEPNLQNIP------------------------IRMELGKEIRRVFPAMEGCVFVDSD 687 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA ++ + I+A+ G+DI+ T + F+TP ++V+ +QR+ K + Sbjct: 688 YSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNF--- 744 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ A + Sbjct: 745 -----------GIVYGIS------------------------------AFGLAKDLGISR 763 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + A + + L E Sbjct: 764 EEAQEYIDGYFAAYPRLHDYLDGLVEFARKEGY--------------------------A 797 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 V RR ++K R VQ + DI+ M Sbjct: 798 VTLFGRRRPVPELKNSNFMQRQFG---ERVAMNAP------VQGTAADIIKIAMVRVHDR 848 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++LTVHDE++ ET + V + M + L+ + + + + Sbjct: 849 LAKEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMRGAAQ--LSVELEIDTHSGRNW 906 >gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 352 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 115/380 (30%), Positives = 168/380 (44%), Gaps = 61/380 (16%) Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 K+ + R S S++ K + + +D R G LQFYGA+RTGRW+G + Q QNLPR Sbjct: 16 EVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPR 75 Query: 333 QERSEEILTQTIQALNRGET----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + +++ GET + S +R+ I S G + +VAD + IEARV Sbjct: 76 NYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPSKGHRFIVADYSAIEARV 135 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAK 446 LAW+AGE+ + AF NGED+Y T + F P++K + E R GK+ LA GY G Sbjct: 136 LAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVG 195 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A+K L + + Sbjct: 196 ALKAMG----------------------------------------ALKMGLSEDELQPI 215 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWRA + ++QLW D+ + G ++ L + + I LPS R Sbjct: 216 VDAWRAANPNIVQLWHDVDNAATRAISTGRPVTL------GNLGFEKKSGMLFINLPSGR 269 Query: 567 RLVYSDVKGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RL Y + + + + TYGGKL ENIVQA +RD+L E + Sbjct: 270 RLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEAITRI 329 Query: 618 TKNGYDIVLTVHDEIVSETP 637 G+ IV+ +HDE+V + P Sbjct: 330 ENAGHRIVMHIHDEVVIDEP 349 >gi|327198385|ref|YP_004306959.1| DNA polymerase I [Streptococcus phage Dp-1] gi|314912687|gb|ADT64078.1| DNA polymerase I [Streptococcus phage Dp-1] Length = 779 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 109/740 (14%), Positives = 214/740 (28%), Gaps = 125/740 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------P 54 ID+ET + + + S M P Sbjct: 87 SIDVETDGLDTI----------HDELAGVCLYSPSQKGIYAPVNHVSNMTKMRIKNQISP 136 Query: 55 SDLLQYLR---DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSL 109 + + L+ D + + HNS F+ LG+ + W T + A SL Sbjct: 137 EFMKKMLQRIVDSGIPVIYHNSKFDMKSIYWRLGVKMNEPAW-DTYLAAMLLNENESHSL 195 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K+ +E + K PP Q F Y ++ Sbjct: 196 KSLHSKYVRNEENAE--VAKFNDLFKGIPFSLIPPDVAYMYAAYDPLQTFELYEFQEQYL 253 Query: 170 T--------RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 T L K L + E L + + G +D D + +++E + + Sbjct: 254 TPGTEQCEEYNLEKVSWVLHNIEMPLIKVLFDMEVYGVDLDQDKLAEIREQFTANMNEAE 313 Query: 222 EDIVKLTDGIIR--------------------------SSRQTYALRMYLFLITGIDLVD 255 ++ +L S L + + I G+ + Sbjct: 314 QEFQQLVSEWQPEIEELRQTNFQSYQKLEMDARGRVTVSISSPTQLAILFYDIMGLKSPE 373 Query: 256 MSE--GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 + GT +SI+ H + +L + D R+ T + YG Sbjct: 374 RDKPRGTGESIVEHFDND--ISKALLKYRKYAKLVSTYTTLDQHLAKPDNRIHTTFKQYG 431 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A +TGR S QN+P + VR AS G Sbjct: 432 A-KTGRMSSENPNLQNIPSRG-------------------------EGAVVRQIFAASEG 465 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 ++ +D + E R LA ++G++ A+ D+Y +K + P ++ + Sbjct: 466 HYIIGSDYSQQEPRSLAELSGDESMRHAYEQNLDLYSVIGSKLYGVPYEECLEFYPDGTT 525 Query: 434 VME------------LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 E L L Y GA +++ N F ++ + + Sbjct: 526 NKEGKLRRNSVKSVLLGLMYGRGANSIAE-----QMNVSVKEANKVIEDFFTEFPKVADY 580 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++Q Q + G L + + + + + + + A Sbjct: 581 IIFVQQQAQDLGYVQTATGRRRRLPDMS-------LPEYEFEYIDASKNEDFDPFNFDAD 633 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTEN 600 + + K + + ++K + + + Sbjct: 634 QQMDDTVPEHIIEKYWAQLDRAWGFK-KKQEIKDQAKAEGILIKDNGGKIADAQRQCLNS 692 Query: 601 IVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETP-DTPYFSVGTLCSLMTK 653 ++Q + D+ M + G+ +++ VHDE++ E P L +M + Sbjct: 693 VIQGTAADMTKYAMIKVHNDAELKELGFHLMIPVHDELLGEVPIKNAKRGAERLTEVMIE 752 Query: 654 NPSWAKGLPLKAEGYEAKRY 673 LP+K + +R+ Sbjct: 753 AAKDIISLPMKCDPSIVERW 772 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 89/677 (13%), Positives = 192/677 (28%), Gaps = 149/677 (22%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66 D E+ S + KV + + I + +++ +E + Sbjct: 335 DEESYSRNYIDKVFISLNEKNFQI----------HINEIYNEDKNKAVELFKLLFENEGI 384 Query: 67 MCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V ++ + +GI + + A S Sbjct: 385 SKVG----YDVKVPCSILYKMGIRFLKLEF-DIKIAAYLIDSSRS--------------- 424 Query: 124 KMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 E K +I + D + + Y + + + L L Sbjct: 425 -DYELKDIIRQYTGVEISE----DDEKFFSKETVLFSKVYSELTKKIEEAHMEEL--LYK 477 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E+ L + ++ G+++D D +++ + E K+ ++I L++ + L Sbjct: 478 VEQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLSEEEF-NINSPKQLG 536 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ ++ T +L + I+ + + L + Sbjct: 537 KILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQLTKLYSTYIEGLKAVI 596 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 D ++ + + TGR S QN+P Sbjct: 597 QEDDKIHSSFNQTV-TTTGRLSSTEPNLQNIP------------------------IKYE 631 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + ++ AD + IE RVLA IA ++ I AF N DI+ T ++ F Sbjct: 632 MGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVFK 691 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 PID+V+ QR+ K + + Y G + L + + + + FE + + Sbjct: 692 VPIDEVTSAQRSNAKAVNFGIVYGIG-----DFSLAKNLKISRKEAKLYIDTYFERYPKV 746 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGS 537 + + + + + L+ R + K + + Sbjct: 747 KLYMDDIVKEAKVNSYVTTLMNR---------RRFIPEIKSSNKIVRSFGERLAMNTPIQ 797 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 SA + + + + RRL + +K Sbjct: 798 GSAADIIKIAMVNVY-------------RRLEENKLKSKL-------------------- 824 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 + E++ +V ++ M K Sbjct: 825 ----------------ILQVHD-----------ELILNVYKEEIDNVKSVVKEEMEKVLQ 857 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL+ + + Sbjct: 858 --LKVPLEVDISVGSNW 872 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 96/654 (14%), Positives = 195/654 (29%), Gaps = 125/654 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A DD+ V D + + L + R E +N + K GI + Sbjct: 328 LMGVALASDDD-VYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNA-GIHV 385 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + ++ + + L ++ + GK + SP Sbjct: 386 HNIAL-DLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKE-WGQLSLPIAKSP---AN 440 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A + + K+ + ++ + E L + TI G +D++ + + Sbjct: 441 PAQYFGGFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQE 500 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L+ ++++E L +DI L + + L L+ G+ +D + T +L Sbjct: 501 LERILSEELAMLTDDIYTLAGAPF-NIKSPKQLSEVLYNKLGLKPIDKARSTKAEVLEAL 559 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + IL A + L V R+ T G + TGR + Sbjct: 560 SGEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQMG-TVTGRLACQDPNL 618 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEA 386 QN+P +R + AD + IE Sbjct: 619 QNIP------------------------IRSERGRLLRKAFCNTHQNNYFLSADYSQIEL 654 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA ++ ++ AF + EDI+ T ++ F+ P+++V+K+QR K + + Sbjct: 655 RFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII------ 708 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 Q + K+ + + + Sbjct: 709 --------------------------------------YGQQAYGLSKILKISVSEAQKL 730 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 A+ ++ V + + ++ + R Sbjct: 731 IDAYFDRYPEVARFINETVSQA--------------------------CENLRVKTLLGR 764 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKN 620 + N R + G +Q + +++ M K Sbjct: 765 ---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLSDALEKRKL 814 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L +HDE++ E P+ + TL +M +PL K + Sbjct: 815 KSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 170/657 (25%), Gaps = 133/657 (20%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + D L R + L + L V N+ + + + LGID+ + + Sbjct: 341 GFVIGDGKTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAKAQIVGLHR-LGIDLRNVDF 399 Query: 94 ICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + + + + + GK Sbjct: 400 -DLLLASYLLNTNDNSNDLGQVALEHDYHEVATDEEVYGKGAKR-------------AIP 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDL 203 A+ + + + + LFK+L +D E L + + G +++ Sbjct: 446 ADDQVFYTHLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNA 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + + + ++ I + T L LF + ++ ++ T Sbjct: 506 QTLKDMGSKLTERLADIESQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYST 564 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +L + IL + + L + + S D ++ ++TGR Sbjct: 565 AVDVLEKLADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRYLQT-LTQTGR 623 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P +R + G ++ Sbjct: 624 LSSVDPNLQNIP------------------------VRLPEGRLIRKAFVPSHAGWQIFS 659 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMEL 437 +D + +E RVLA I G+ + F NGEDI+ +T + F+ P D ++ + R K + Sbjct: 660 SDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNF 719 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y + + + + + F+++ + + E + Sbjct: 720 GIVYG-----ISDYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVET 774 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + R + + Sbjct: 775 ITHR---------RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADI------------- 812 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 +K + Q + + Sbjct: 813 ---------------IKIAMIRMKEEIKQRQLQA--------------------RMLLQI 837 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P + L +M +PLK E + Sbjct: 838 HD-----------ELVFEAPAEEIPVLQKLVPQVMDSAVQ--LNVPLKVESKVGDTW 881 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 102/667 (15%), Positives = 181/667 (27%), Gaps = 141/667 (21%) Query: 27 QAVITLCAYAWDDEPVKL--WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 Q A A + V D T L +L D T V H + Sbjct: 355 QGDAWGIALAAGGQGVAYDLADITPDDE--QALATWLADPTAPKVLHGAKTAWHALA-AR 411 Query: 85 GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 GI + T + A L + E ++ + + G+ Sbjct: 412 GIGLDGV-VFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDDDAQGALDLDLGGAGT 470 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + TRA V D A L +D E L + + G Sbjct: 471 QGVREATRAAAVADLAQALAGQLDDRGAASLL-------TDVELPLSAVLARVEATGIAT 523 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256 D + L+ A + + + + + L+ LF + Sbjct: 524 DTAYLTGLERGFADQVAQAAAEAYDAIGHEV-NLGSPKQLQEVLFGELDMPKTKKTKTGY 582 Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L + + + L +L ++ + + L ++V DGR+ T Q A Sbjct: 583 TTDAAALAELYAKTGHPFLEH--LLAHRDAAKLRVT-VEGLLKSVHPDGRIHTTFQQTIA 639 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P A +R G Sbjct: 640 -ATGRLSSTEPNLQNIP------------------------IRTEAGRQIRRAFRVGEGF 674 Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + L+ AD + IE R++A ++G++ I+AF GED++ ++ F V+ E R+ K Sbjct: 675 ESLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVK 734 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M L GL + Sbjct: 735 AMSYGL--------------AYGLS------------------------------AFGLS 750 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + + + A+ GV + + E + Sbjct: 751 QQLGIATGEAQGLMDDYFARFGGVREYLDGVVEEARATGYTATVL--------------- 795 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ D ++ +Q + DI+ Sbjct: 796 -----------GRRRYLPDLTSDNRQRRQMAERM---------ALNAPIQGSAADIIKLA 835 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666 M + ++L VHDE+V E + + M + +PL Sbjct: 836 MLGVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGAA--YTLDVPLDVS 893 Query: 667 GYEAKRY 673 + + Sbjct: 894 VGSGETW 900 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 91/576 (15%), Positives = 165/576 (28%), Gaps = 120/576 (20%) Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L+ + L RF SI S D + V+A E Sbjct: 405 HDMSLLAYLLDPTRTNYGYL---YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACES 461 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE L E L + G ID + + + +E ++ ++I Sbjct: 462 AR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELAQVQQEIYD 517 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + G + L + LF + ++ ++ T +L + IL + Sbjct: 518 IA-GETFNINSPKQLGVILFEKMNLPIIKKTKTGYSTDAEVLDMLRHESPIVEKILAYRS 576 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L+ ++ R+ T + TGR S QN+P Sbjct: 577 VAKLVSTYCEGLAVLINDKTKRIHTTFNQMV-TATGRLSSSDPNLQNIP----------- 624 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401 +R+ G LV AD + IE R+LA ++G++ IKA Sbjct: 625 -------------VRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKA 671 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G+DI+ T A+ + V+ E+R+ K + + Y L + + Sbjct: 672 FVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKAINFGIIYG-----ISDFGLSRDLGITR 726 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 F + + + + M + E + G EL + Sbjct: 727 GEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQREL---------PDINSRN 777 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + +N Sbjct: 778 FNRRSFAER-----------------------------------------------TAMN 790 Query: 582 TATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638 T KL N V Q + + ++L VHDE+V E + Sbjct: 791 TPIQG---TAADIIKLAMNQVEQ------------KLEEGNFTSRLLLQVHDELVLEVVN 835 Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + +V L M + L + + A+ + Sbjct: 836 SELEAVEELLRTTMQSVVE--LQVHLIVDVHHAENW 869 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 97/648 (14%), Positives = 167/648 (25%), Gaps = 138/648 (21%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D T+ ++ D V HN+ +F + G + T++ A Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L +A + + Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPA--AASDGQLAFGADDRAEQDALMAQARAVLDLGDA 486 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F K A L D E +L + G D + +++ A + Sbjct: 487 FTTRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQ 538 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273 + ++ + L+ LF G+ ++ + Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHE 597 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 598 LPVLMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE RV+A + Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF +GED++ T ++ F D V E R K M L Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGL------------- 738 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GL SQ + ++ + Sbjct: 739 -AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYFE 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV + E + RR D Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626 + D A ++ +Q + DI+ M K ++L Sbjct: 802 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLL 852 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 VHDEIV E V + M PL K + Sbjct: 853 QVHDEIVLEIAKGERQQVEEILRHEMANAVELRA--PLDVSVGVGKDW 898 >gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] Length = 944 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 86/653 (13%), Positives = 178/653 (27%), Gaps = 150/653 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I + ++ D+ + D+ + + L V+ V ++ K + D+ Sbjct: 424 IDSVSLSYKDDILLYIDKDHVTDALELIKPVLGLNYVLKVI----YDVKTLLKVIP-DVE 478 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + +++ + S I K + + T Sbjct: 479 IVAFDDIMIMSYILSPS--------VHDHSLQEI--------INYNVKQDVVNVKTAITL 522 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + + + +++R+ E+ L + ++ G ID+D++ L Sbjct: 523 LLLHKLLKKNLFVNQL-----YTIYERV------EKPLIRVLDSMEKVGMLIDIDILKTL 571 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 +++ L+ +I +L + + L LF GI T +L Sbjct: 572 SSTFSEKVSVLENEIYRLAGTEF-NIASSKQLGTVLFDKMGIKKSKKLSSGSYSTDAEVL 630 Query: 266 SHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 + D IL + + L + ++S+ GR+ ++ TGR S Sbjct: 631 NDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFYSMI-STATGRLSSS 689 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R +A G KLV AD + Sbjct: 690 NPNLQNIP------------------------IRSEEGNAIRRAFVARKGYKLVSADYSQ 725 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A IAG AF +DI+ T + F T Sbjct: 726 IELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIFCT------------------------ 761 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 ++ + + A + + + Sbjct: 762 ----------------------QSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEA 799 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + ++ Sbjct: 800 NAYIDNYFKSYPEIQSYMNNIKIYAKTYGYTRTIF------------------------- 834 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 R+ D+ + + R Q S DI+ M + Sbjct: 835 -GRKCFIRDINSSNAAARNFS---ERAAINAPL------QGTSADIIKMSMIHLFDKITH 884 Query: 624 --IVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + +V + +M +PLK + + Sbjct: 885 GSLILQVHDELLFEILEEYVDYAVEVITKVMEGIVK--LSVPLKVDIRIGTNW 935 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 205/697 (29%), Gaps = 156/697 (22%) Query: 1 MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDL 57 M + ID ET PL + I L A PV + D + S L Sbjct: 32 MKARVIGIDTETTGLDPLTE----------RIRLIQIAAPQHPVIIVDLAALADSELSPL 81 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L + + + V N F+ + + G+ PS + + ++ + Sbjct: 82 KALL-NSSALKVFQNGKFDWQVLEMA-GLR-PSGPFFDVMLASQVLRSG-----LKKDHD 133 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + K + + A L + + L Sbjct: 134 LQSLTFEFLGIKLDKSLQSSNFAGKLSASQLEYAALDAAVLLKLRARLHSKLRSA---GL 190 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----------- 226 + + E + G +D++ + E + +++ ++VK Sbjct: 191 LETAKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVKAGLKPAPSAQL 250 Query: 227 ---LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + R + + L I + S+ L I L+LN Sbjct: 251 SLFPDMVETINPRSSVQVLSAL-QALNIPIKSTSKSELIPIARQ----YPVIQLLLNYRK 305 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L + + GR+ + + GA R+GR+S QN+PR Sbjct: 306 LASLCSNFAEALPKHIHQITGRIHPSYRQCGA-RSGRFSCKQPNLQNVPRNCT------- 357 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+C IA G +++ AD + IE R++A I+G+ + A+ Sbjct: 358 ------------------VKGMRACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAY 399 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T + +++V+ E R I K + L Y GA + A Sbjct: 400 VKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYAEEK------- 452 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 L + +K + + GV + Sbjct: 453 -------------------------------YDVLLTLEEAKEFRKRFFQAYSGVKRWHD 481 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V ++ ++ +R P RL Sbjct: 482 SIRRTV-------------YVKDIKQIRTIGGRRRRWAKKP---RLSE------------ 513 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 L + VQ S D+L + K G ++ VHDEI+ E P Sbjct: 514 --------------LLNHPVQGTSADMLKVAIARLFKLLPKTGAKLIAVVHDEILLECPQ 559 Query: 639 TPYFSVG-TLCSLMTKNPSWAK-GLPLKAEGYEAKRY 673 T L +M + +P++ E A + Sbjct: 560 TTLKRTSCILKKVMVEAGELYLQQVPVEVEVKIASSW 596 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 130/472 (27%), Gaps = 73/472 (15%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQS----------AMPSDLLQYLRDETVMCVAHNSLF 75 A + A A + + + + + L D + V H+ F Sbjct: 80 MSAHVCGVALACEPGQAVYVPLGHRYLGAPAQLSMSDIDAVMGPLLADPELPKVGHDVKF 139 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLA-LNFSEHLTKMEEGKALI 132 ++ + I + + T + + L L K Sbjct: 140 CEVILLRHR-IGLVGVSF-DTMLASYLLDPEGKNQLHELAERELGAKMQTLDEVAPKRRG 197 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------D 182 RA Y + L RL P Sbjct: 198 Q-------------AQRALDEIELGEASSYGAAFADVALSLTDRLRPRLRVEKLEDLLVQ 244 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G +D + +L + E L++ ++ I + L Sbjct: 245 IELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDI-NLASPKQLE 303 Query: 243 MYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + T +L + ++L A + ++ L V Sbjct: 304 AVLFDELKLRSQRKTKTGRSTDADVLEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLV 363 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ A TGR S QN+P Sbjct: 364 NPGTGRIHTRWGQAVA-ATGRLSSQDPNLQNIP------------------------IRT 398 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G +V AD + IE RVLA ++ + + AF G+D++V T + F Sbjct: 399 ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFG 458 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 V+ E R K + + Y G LD+ + + Sbjct: 459 VDQAGVTAEMRRRSKTINFGVIYGMGESAL-----AKRLDISRAEAARFIDA 505 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 92/678 (13%), Positives = 192/678 (28%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +N+ R + +K LGID ++ ++ A + + F Sbjct: 382 EIKKITYNAKNPRTILRK-LGIDFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K N + E +D + L+ Sbjct: 440 NREDEFLK-----------------IKEVNIMPNLYKVLEEKIKDQDMEELLY------- 475 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 476 KVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEKF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R+ K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELERIKALVKKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 97/648 (14%), Positives = 167/648 (25%), Gaps = 138/648 (21%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D T+ ++ D V HN+ +F + G + T++ A Sbjct: 371 WLDPTQLEEADERAFAAWVSDPARPKVLHNAKNVMRVFPEH-GWRLEGVTM-DTALAAYL 428 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L +A + + Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPA--AASDGQLAFGADDRAEQDALMAQARAVLDLGDA 486 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F K A L D E +L + G D + +++ A + Sbjct: 487 FTTRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQ 538 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273 + ++ + L+ LF G+ ++ + Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHE 597 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 598 LPVLMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE RV+A + Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF +GED++ T ++ F D V E R K M L Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGL------------- 738 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GL SQ + ++ + Sbjct: 739 -AYGLSAFGLSQQLNIDPA------------------------------EARVLMDTYFE 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV + E + RR D Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626 + D A ++ +Q + DI+ M K ++L Sbjct: 802 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLL 852 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 VHDEIV E V + M PL K + Sbjct: 853 QVHDEIVLEIAKGERKQVEEILRHEMANAVELRA--PLDVSVGVGKDW 898 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 97/693 (13%), Positives = 169/693 (24%), Gaps = 155/693 (22%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPSDL---------LQYLR 62 G+ + A A + P + + Sbjct: 377 GLHLHRGDAGAIGLGIAVEPGRAVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALME 436 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119 D V + H+ + LG +I +++ L Sbjct: 437 DAGVRKIVHDLKGTAKAAGR-LGFEIAGA--DDVGLMSYALESGLTGHGLPELAARH--- 490 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 L A + + +A L+ L P Sbjct: 491 -----------LGNAAPDPDALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAP 539 Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E + + + G RID ++ +L +L+ +I +L Sbjct: 540 RLEGTPTQAVYEELELPMVPVLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGG 599 Query: 230 GIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSN--ITQLAKDLILNRLA 283 G + + LF G+ T +IL L L+ R Sbjct: 600 GPFQ-IGSPKQIGDVLFGRLGLPGGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRT 658 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + + L A T A+ TGR S N+P Sbjct: 659 SKLKST-YADALLSAADRGTDRVHTTFSLAATTTGRLSSSDPGLHNIP------------ 705 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R+ +A+ G +++ AD + +E R+LA IA +AFA Sbjct: 706 ------------IRTEEGRRIRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFA 753 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ T + F P+ V E R K + + Y L + + Sbjct: 754 EGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYG-----ISAFGLADRLGIGRQE 808 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 FE + + + E L G C + G+ Sbjct: 809 AAEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCH---------YPGITSGNVS 859 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 G A++ R M R + + S+R L Sbjct: 860 ERMGVERQAVNAPIQGTA--ADIIRRAMIRMEGALADSGLSARML--------------- 902 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP-YF 642 E+V E + Sbjct: 903 -------------------------------LQVHD-----------ELVFEVAEAECAD 920 Query: 643 SVGTLCSLM--TKNPSWAKGLPLKAEGYEAKRY 673 + + +M P +PL E A+ + Sbjct: 921 TARVVSDVMAGAAAPDIDLAVPLVVEARSAENW 953 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 92/667 (13%), Positives = 181/667 (27%), Gaps = 143/667 (21%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85 + A D +D E +L D H++ G Sbjct: 372 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALAG-RG 430 Query: 86 IDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141 ++ T + + +A LN + + +A++ S + Sbjct: 431 WEVAGLTC-DTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAMLDFGNDSSAE 489 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S +A + + E L L D E + ++ G + Sbjct: 490 SM---------ERAVAVTKLADVMEKEVEARGGSEL--LHDVEMGVQRCLISMERVGIAV 538 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259 D D++ L+ + + + G + L+ LF + ++ Sbjct: 539 DTDILEGLRSEFDERVTRAQGAAWEAA-GEKINLSSPKQLQGVLFEKLDMPKTRRTKSGY 597 Query: 260 -----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L + + LA L+ +R A ++ L + + DGR+ T A Sbjct: 598 TTDADALAGLYEKTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIA 654 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P +R + G Sbjct: 655 -ATGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVVGEGY 689 Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K Sbjct: 690 ESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIK 749 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M GL + Sbjct: 750 AMNYG--------------LAYGLS------------------------------AYGLS 765 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + K+ + + + ++ V + +++ + + Sbjct: 766 NQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVDQARRQGYTETLL--------------- 810 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ + +Q + D++ Sbjct: 811 -----------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADLIKLA 850 Query: 614 MK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + G ++L VHDE++ E V + M +PL Sbjct: 851 MVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVS 908 Query: 667 GYEAKRY 673 + + Sbjct: 909 IGVGRSW 915 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 91/625 (14%), Positives = 165/625 (26%), Gaps = 137/625 (21%) Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSEH 121 + HN+ +F + G + T++ A L L+ Sbjct: 379 RPKILHNAKGAMRVFAEH-GWSVEGVTM-DTALAAYLVKPGRRSFDLDALSLEYLHRELA 436 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 +G +A ++ + + F + A L Sbjct: 437 PAAEADG--QLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADL--------LR 486 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + G D + ++++ A ++ ++ + L Sbjct: 487 DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQL 545 Query: 242 RMYLFLITGIDLVDMSEG---TLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLS 296 + LF + ++ T L+ ++L + + + L Sbjct: 546 QEVLFGELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVT-VEGLI 604 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + +++DGR+ T A TGR S QN+P Sbjct: 605 KTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP------------------------V 639 Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T ++ Sbjct: 640 RTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAASQ 699 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F V E R K M L GL SQ + + Sbjct: 700 VFAVEPTAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIEAA---- 741 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + A+ + GV + + Sbjct: 742 --------------------------EARALMDAYFERFGGVRDYLRRAVDEARATGYTA 775 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 RR D+ D R Sbjct: 776 TLF--------------------------GRRRYLPDLNSDNR---------QRREAAER 800 Query: 596 KLTENIVQAISRDILCEGMKNATKNG------YDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M N ++L VHDEIV E + L Sbjct: 801 MALNAPIQGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERATAEELVR 860 Query: 650 L-MTKNPSWAKGLPLKAEGYEAKRY 673 M +PL + Sbjct: 861 REMANAVQ--LRVPLGVSVGSGPDW 883 >gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500] Length = 1411 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 99/757 (13%), Positives = 184/757 (24%), Gaps = 162/757 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLWDR--TEQSAMPSD 56 D E L K I + + D + + + Sbjct: 707 ACDTE-VVDLDLKKQSP---IGHGRIICFSVYCGPDIDFGTGSRLWVDTMGEQGNEILEV 762 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLK 110 Y E++ V HN F+R +F ID+ T +AR SL+ Sbjct: 763 FRPYFESESIYKVWHNYGFDRHIFYNH-NIDVKGFG-GDTLHMARLWDAARNGRGGYSLE 820 Query: 111 NACLAL--NFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDV 167 L N K GK I D P H + + + EY D Sbjct: 821 GLSKELLDNHKT-SIKDLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETWIEYSSLDA 879 Query: 168 EATRELFKRLIPLSD--------GERDLW--------LLDQTINDRGYRIDLDLVLKLQE 211 E T L + L D + L + RG ++D++ + ++ Sbjct: 880 ELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDIEHLKTVEG 939 Query: 212 LIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---------LITGIDL---- 253 + ++ + + + + + ++ LF ++ Sbjct: 940 VATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEMPLEREFET 999 Query: 254 ----------VDMSEGTLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTL 295 + +LS + A D R + + K + Sbjct: 1000 ENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNPSKGKYGKI 1059 Query: 296 SEAVSSDGRLRGTLQFYGA-------------SRTGRWSGCVFQPQNL------PRQERS 336 + + G S S + Q L + Sbjct: 1060 FNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPLQKLCDSNHRVHTSVN 1119 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 T + + L +R G LVVAD +E R+LA I Sbjct: 1120 VNTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELRLLAHITNCR 1179 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I AF G D + T + + V + + G Sbjct: 1180 SMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDV---------------------LLEWDG 1218 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 S + + + + + + W + Sbjct: 1219 DGEPPKPLLKDSFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPE 1278 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 VL + + R + D+ Sbjct: 1279 VLLWQRKTIQIA--------------------------NTHKWTRTLMGRYRMLPDIDNP 1312 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVLTVHD 630 + + R +Q + DI+ + M + G+ +++ +HD Sbjct: 1313 AKGMKGHS---ERASI------NTPLQGGAADIVMKAMLMIEEDKRLKELGFQLIMQIHD 1363 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 E++ E P+ + LM+ PL E Sbjct: 1364 ELILEGPEQHAKEAREIVMRLMSNP----LNTPLLVE 1396 >gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] Length = 1126 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 77/606 (12%), Positives = 156/606 (25%), Gaps = 137/606 (22%) Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLAL-------NFSEHLTKMEEGKALIARFCKGSI 140 + T + A ++ + L ++ + + ++ Sbjct: 634 VAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKAL 693 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 +QA ++ + + E L + + G Sbjct: 694 SEMLACAKAQRVLQAPLMYALMLDESYDVYCGI----------ELPLICVLLDMERTGLH 743 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--DMSE 258 +D D++ + I +E + + G + L LF + + ++ Sbjct: 744 VDTDILHEQSMAINREINHMLATLH-TDIGETINIDSPMQLSHVLFDVWQLPTKGLKKTK 802 Query: 259 ----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 T L + LIL+ + L+ L + DGR+ T A Sbjct: 803 RGYFSTNAKTLETLSKQDDRVQLILDYRERAKLKSTYLDALPAQIKPDGRIHTTFNQTVA 862 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P VR ++ Sbjct: 863 -ATGRLSSSDPNLQNIP------------------------TRSQLGHRVRKAFTVADDS 897 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 + D + IE R+LA ++ + I AF +G D + T ++ F D V+ + R+ Sbjct: 898 VFLTCDYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRIFGIEQDAVTPQLRSRA-- 955 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 +A + + Q A Sbjct: 956 ------------------------------------------KAVNFGIVYGQQAFGLAS 973 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 K+ + + + + V + + +R + Sbjct: 974 SLKISRATAKEMIDKYFEVYPCVREFLDESVAFARAHGYVPTMYGRKRHIEHINASNFQL 1033 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 + + + + +Q + DI+ M Sbjct: 1034 -----------------RSFAERTAM------------------NHPMQGSAADIIKLAM 1058 Query: 615 KNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEG 667 K +VL +HDE+ E ++ L M S +PL A+ Sbjct: 1059 IEVEKRLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHVVS--LRVPLIADI 1116 Query: 668 YEAKRY 673 A + Sbjct: 1117 SYASNW 1122 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 91/653 (13%), Positives = 180/653 (27%), Gaps = 117/653 (17%) Query: 22 WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 E A D VK E L + + DE V + ++ + I+ Sbjct: 331 GKIYEDVKPIYLAVKVKDSEVKFISYEEIDF--DFLKKIMEDEKVEKLGYSLKEDIIILM 388 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNFSEHLTKMEEGKALIARFCK 137 LGIDI + + S + + GK + Sbjct: 389 -DLGIDIKNYS-HDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYA 446 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + ++ + + E L D E L + ++ Sbjct: 447 DLDKDDLF---KYFAFVLNTIYRLEDLQKEKIDEEEMTSLY--QDMELPLVEVLASMEYV 501 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G D ++ ++ + I ++ K L+E+I + L + LF ++ + Sbjct: 502 GINTDEAVLDEIDKQIIEKLKTLEEEIYDEAGEKF-NINSPKQLGVILFDKMDFPVIKKT 560 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L D IL+ S ++ L ++ + + Sbjct: 561 KTGYSTSADVLEKLRGKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIHSRFMQTV 620 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P +R +AS G Sbjct: 621 TATGRISSTDPNLQNIP------------------------IKTEEGRLIRKAFLASEGG 656 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE RVLA ++ + + AF +G DI+ T ++ F+ D+V QR K Sbjct: 657 VLVDADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDRQRYEAKA 716 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L++ + + + + + + + Sbjct: 717 VNFGIVYG-----ISDYGLSQNLNIPRKAAKEYIDNYLGHFVGIKDYMAEEIKNGKDKGY 771 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + R + ++ + + Sbjct: 772 VETIFKR---------RRYIPELNAKNFNIRSFGERIALNTPIQGSAADII--------- 813 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 ++ V + N + I+Q Sbjct: 814 ------------KIAMVKVYNELKKRNLKSKL--------------IIQ----------- 836 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666 +HDE+V +T + V L LM + + L + Sbjct: 837 -------------IHDELVVDTAEDEIEEVKELMKDLMENSVD--LNVKLSVD 874 >gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b] gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b] Length = 864 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 83/651 (12%), Positives = 183/651 (28%), Gaps = 120/651 (18%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A + V + D T + +++ DET + ++ I K+ + Sbjct: 324 DVIGVAIASERG-VTIGDVTLLED--ERVKEWIEDETKTTICLDAKQTIIQLKRH---QL 377 Query: 89 PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + V L SL + + + GK + + ++ Sbjct: 378 ALRGYEDLLVAGYLLNLSGGTSLSSIAAHFTYPLEEDETVYGKGAKIKVPEENVFHAHLA 437 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 ++ K + + L++ L E+ L + + G ++++ + Sbjct: 438 EKAYAIYTLFERVVSELKENEQTE--LYEAL------EKPLVSVLAEMEWAGIHVNVETL 489 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++ + + L+ I +L + L + LF + V ++ T Sbjct: 490 QHMETDLRERLNALEITIHELAGEPF-NINSPKQLGVVLFEKLSLPPVKKTKTGYSTAAD 548 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L + I++ + L + V DG++ ++TGR S Sbjct: 549 VLEKLAPLHPIIEKIMHYRELGKLQSTYVEGLQKVVKDDGKIHTRYTQT-LTQTGRLSSV 607 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLA 382 QN+P +R A G L D + Sbjct: 608 NPNLQNIP------------------------IRLEEGRRIRKAFTASEPGWVLYAVDYS 643 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++ ++ + AF + EDI+ +T A F ++V+ R K + + Y Sbjct: 644 QIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVNFGIIYG 703 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L + + + FE + ++ ++ E + ++ Sbjct: 704 -----ISDYGLSQNLGITRKEAQTFIDTYFEQFPGVKTFMDAAIERAREHGFVETMLKR- 757 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + +L + + ++ L Sbjct: 758 --------RRNIPDIHSRNFNLRGFAERTAINTPIQGTAADI-IKKAMIDVDHALNASKL 808 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 S L D M+ K Sbjct: 809 QSKLLLQVHDELIFEGPTEE-------------------------------MEALEK--- 834 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V+E M + + +PL+A+G + Sbjct: 835 ---------LVTEA--------------MEQTVT--LDVPLRADGAVGTTW 860 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 97/656 (14%), Positives = 175/656 (26%), Gaps = 149/656 (22%) Query: 33 CAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI--D 87 A A+ + V + A+ + L R +F+ KK L + Sbjct: 346 IALAYGKDQVYSIACSMDTDMDALFAQLSDVARSAGRFV-----MFD---LKKYLPVLGA 397 Query: 88 IPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + K +V A + ++ L E K+ Sbjct: 398 VCQKNCFDATVAAYLLNPLKNDYTYEDVAREQLGLMMDDKADEWTKSCYE---------- 447 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 T + K E LF + E L + G RI+ Sbjct: 448 --AYTAYAASE-----KLMEKLKEEQMDRLF------LEIEMPLVFTLFDMEQAGVRIEA 494 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + K E + ++ +L+ +I ++ G + L + LF + ++ T Sbjct: 495 EELKKYGEQLGEQIVQLESEIYEMA-GENFNINSPKQLGVILFEKLQMPHAKKTKTGYST 553 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L D IL + + L+ + DGR+ GT + TGR Sbjct: 554 AADVLEKLAPEFPIVDKILEYRQLTKLKSTYADGLANYIGPDGRIHGTFNQT-ITATGRI 612 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R + G + AD Sbjct: 613 SSTEPNLQNIP------------------------VRMELGRLIRKVFVPQEGYVFIDAD 648 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA +G+ I+A+ +DI+ T ++ F TP D+V+ QR K + + Sbjct: 649 YSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTDLQRRNAKAVNFGIV 708 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + L + + + S FE + + E L G Sbjct: 709 YG-----ISSFGLSQDLSITRKEASQYIESYFETYPGIKKFLDDSVTHAKEEGYAVTLFG 763 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + V Sbjct: 764 RRRPI---------PELKSSNFMQRNFGERVAMNAPIQGTAADI---------------- 798 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-NATK 619 ++ V + + M Sbjct: 799 -----MKIAMIGVNRELKEKR----------------------------MKSRMILQVHD 825 Query: 620 NGYDIVLTVH-DEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ H DEI +V + M S +PL A+ K + Sbjct: 826 E---LLIETHPDEI---------ETVKEILKRQMETAAS--LDVPLIADMQVGKNW 867 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 101/630 (16%), Positives = 178/630 (28%), Gaps = 148/630 (23%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNGLPS-SL 109 P L+ LR E V+ H + + G+++ ++A + Sbjct: 372 PERALELLRSEEVL---HAA--DAKALAVYAQRCGLEVRPG--DDPLLMAYVLDPSAADP 424 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + + + + A Sbjct: 425 ETLTRRYG--------------------TPAWGATAVARAVATAELSRTLRP---KLAGA 461 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R L++ + ER + + + G R+D + E +A++ L+ ++ +L Sbjct: 462 LRRLYE------EIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAG 515 Query: 230 GIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF G T S L LIL + Sbjct: 516 NPNLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVSALEPLKDAHPVVPLILEYRELA 575 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L+ L ++ GRL T A+ TGR S QN+P Sbjct: 576 KLKSTYLDPLPRLINPHTGRLHTTFNQT-ATATGRLSSANPNLQNIP------------- 621 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +A G L+VAD + IE R+LA I GE+ ++ F Sbjct: 622 -----------VRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRR 670 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GEDI+ T A+ F P + V+ E R + KV+ + Y A L + Sbjct: 671 GEDIHRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRL-----ARELSIPYAEA 725 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + S FE + + ++ + + L G + + ++ Sbjct: 726 DAFIRSYFEGYPKVRAYIDETLAFARDKGYVETLFGRRRPI---------PDIRSSNRNA 776 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + +L + Sbjct: 777 REYAERTAYNMPIQGTQADIV---------------------KLAMVRL----------- 804 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS-ETPDTPYFS 643 L R + +G KL +L VHDE+V Sbjct: 805 --LPRLKAHGAKL---------------------------LLQVHDELVLEAPEGAAEAV 835 Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + ++M +A +PL AE + + Sbjct: 836 AAEVKAVMEGA--FAMRVPLVAEVGRGRNW 863 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 81/610 (13%), Positives = 148/610 (24%), Gaps = 159/610 (26%) Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 D+ +R +V A + Sbjct: 445 DVDHRRVFDVAVAGYLLDS----DAAS-------------------------FSVADLVS 475 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTIND 196 + D L L + E L + + Sbjct: 476 REMDMSLPEPTDELPQAALDAVGAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMER 535 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL--- 253 G D + + + E + I D + L LF + G+ Sbjct: 536 TGLHADAGRLAEQSRELGSEIDCMVATIKADADEDF-NMDSPQQLSHVLFDVWGLPTFGL 594 Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T L +IL+ + L+ L + DGR+ TL Sbjct: 595 KRTKKGFYSTNAKTLEDLAQQDGRVRMILDYRERAKIKSTYLDALPADIRRDGRIHTTLN 654 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P VR+ Sbjct: 655 QTVA-ATGRLSSSAPNLQNIP------------------------TRSELGHRVRTAFTV 689 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + D + IE R+LA ++ + + AF +G D + T A+ F P+++V+ + R+ Sbjct: 690 PEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAARVFGVPVEEVTPQLRS 749 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 +A + + Q Sbjct: 750 RA--------------------------------------------KAVNFGIVYGQQAF 765 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A ++ + + + + GV + +R Sbjct: 766 GLASSLRIGRAEAQEMIDRYFEAYPGVRAYLDQSVDFARKRGYAVTMYGRKR-------- 817 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 HI ++R + + + + +Q + DI+ Sbjct: 818 --------HIRDINARNFQL-RSFAERTAM------------------NHPMQGTAADII 850 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 M + +VL +HDE+ E P + L M +PL Sbjct: 851 KLAMVRVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVCE--LRVPL 908 Query: 664 KAEGYEAKRY 673 A+ + Sbjct: 909 LADVSYGANW 918 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 96/597 (16%), Positives = 177/597 (29%), Gaps = 133/597 (22%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + E + L +D + Sbjct: 414 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQLSLLDDMEGVDD---QAVQTA 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 ++A + D E R L+ D E + + + G +DL L+ +LQ Sbjct: 471 ILRARAVADLAEALDAELARIDSTALLA--DMELPVQRVLADMERAGIAVDLRLLAELQS 528 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSI 264 A + + + G + L++ LF G+ ++ ++ + Sbjct: 529 QFADQIRDA-AEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAVQGL 587 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + L +L + + ++ L +V++DGR+ T A TGR S Sbjct: 588 FEKTGHPFLQH--LLAHRDVTRLKVT-VDGLLNSVAADGRIHTTFNQTIA-ATGRLSSTE 643 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P A +R + G +L+ AD + Sbjct: 644 PNLQNIP------------------------IRTDAGRQIRDAFVVGAGYSELMTADYSQ 679 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 680 IEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG----- 734 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL + + K+ Sbjct: 735 ---------LAYGLS------------------------------AYGLSTQLKISTEEA 755 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 ++ + A+ GV + E + Sbjct: 756 KVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVL------------------------- 790 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RR ++ R +Q + DI+ M K Sbjct: 791 -GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIEVDKALTE 840 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E V L M +PL+ + + Sbjct: 841 AGLASRMLLQVHDELLFEIAPGERERVEALVREKMGGAYP--LDVPLEVSVGFGRSW 895 >gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ] gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ] Length = 853 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 97/666 (14%), Positives = 188/666 (28%), Gaps = 155/666 (23%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFER 77 +G++ EQ I+ A D+ E+ + + L ++V+ V ++ Sbjct: 324 LGLYIEVEQGFISTIFAACDETRSFTVSSPEKVQKFVAAVTPILHSDSVLKVV----YDA 379 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIAR 134 + + + +++ + + + + G LI Sbjct: 380 KSMMQFFP---ELRAFDDIMIMSYSLDTGHHDHGFDSMSQR--HLGQIFGITNGCILIRL 434 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 ++ Y ++ L ER L + + Sbjct: 435 HRV--------------IMRKLFSAKLY---------TVYYTL------ERPLVPVIYEL 465 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----G 250 G +ID +L+ +L + + L+E+I L + + L LF Sbjct: 466 EKTGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCKF-NIASSQQLGKVLFEHMRIGGA 524 Query: 251 IDLVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGT 308 + S T +L+ + D IL + + L V ++ GR+ Sbjct: 525 KKMPSGSYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTK 584 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P + +RS Sbjct: 585 YSMT-ATATGRLSSSNPNLQNIP------------------------IRSKDGEKIRSAF 619 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G KL+ AD + +E ++LA IA +AFA G DI+V T + F ++ E Sbjct: 620 IAEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFG-EYYEIDYEL 678 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y G + + + + + F+ + + + + + Sbjct: 679 RRRAKSINFGIIYGMG-----SYGLARNIGISRREASEYVEQYFQYYPEIKRYMETTKAY 733 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + G C + G+ + L+ Sbjct: 734 AKKHGYTITAFGRKCFIE---------GINSPKRALSSVAERAAINAPIQGTAADIVKKA 784 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 +V + + Q Sbjct: 785 MVRLQD---------------------------------------------RLTQGT--- 796 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667 ++L VHDE++ E P+ SV L +M + LPL Sbjct: 797 ---------------MLLQVHDELLVEVPEEHVLSVARLMKEVMESAVVF--SLPLDVNI 839 Query: 668 YEAKRY 673 + Sbjct: 840 SVGDNW 845 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 84/624 (13%), Positives = 180/624 (28%), Gaps = 135/624 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ ++ + V +N + + GI + + + ++A + +N Sbjct: 390 KEIQEFFDNYNGEIVTYNLK---NILNR--GISVKNCKLD--MMIAYHLISSQTKENV-- 440 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFGEYCKRDVEAT 170 E + G L K + P + + + L Y E Sbjct: 441 -----ELPIEHLTGIELDNYADKFGKEKPENISAKEYGKYLCQRTMGLLECYDILKEELE 495 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L++ E L + ++ +G +ID + ++ + +KL E I + Sbjct: 496 DR--NLMKVLNEIEMPLIEILSSMEIKGIKIDPEYFSNYEKELGDLIEKLQEKIYEEAGE 553 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQ-LAKDLILNRLASSG 286 + L LF + V ++ T + +L + IL + Sbjct: 554 EF-NINSPKQLAEILFFKLNLPPVKKTKTGLSTDEEVLEKLKVDGAEIAKAILEYRKLAK 612 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ + + R+ T G + TGR S QN+P Sbjct: 613 LKNTYVDAIPKLRDEKDRVHTTFNQIG-TTTGRLSSSDPNLQNIP--------------- 656 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A L+ D + IE RVLA ++G++ +A+ N Sbjct: 657 ---------VKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLREAYQNSM 707 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T K F + S Sbjct: 708 DLHSLTARKIF-------------------------------------------ELSDEE 724 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + A + + + ++ V K++ E Sbjct: 725 EVSREERIIAKTINFSIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFEKEIVE 784 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR+ + + K SQ Sbjct: 785 FTEKHGYTETFFGRRRLIDGINSKNKNIK-----------------------------SQ 815 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK-----NGYDIVLTVHDEIVSETPDTPY 641 R +++Q + +I+ + M K +G ++L VHDE++ E Sbjct: 816 AERMA------VNSVIQGTAAEIIKKVMIEIYKYIKDRDGISLLLQVHDELIFEIEKEKL 869 Query: 642 FSVGT-LCSLMTKNPSWAKGLPLK 664 + +M ++ + +PL+ Sbjct: 870 EMYREDIEKIMRESVKF-DSVPLE 892 >gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] Length = 880 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 89/610 (14%), Positives = 168/610 (27%), Gaps = 131/610 (21%) Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLT-KMEEGKALIA 133 +F K LG + + + A ++ ++ + GK Sbjct: 384 KVFLKKLGTEFNHVTY-DLLLAAYLIQSSIGKQDFTFIAQQFQITDIQYDEEVYGKGAKK 442 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 D + +A + + + T L+ D E L + Sbjct: 443 ALPLIPSDYEGHIAKKA-----YIIHKLMQQTLDVLTERNQLSLLN--DVELPLSDVLAD 495 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + +G +DL + + ++ KL +I+ L + L LF G+ Sbjct: 496 MEYQGLTVDLKELENQTKDMSLRIDKLRTEILLLAGVDF-NVDSPKQLGDVLFDTLGLPN 554 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ T +L++ +LI+ + L + E+V D R+ Sbjct: 555 GKKTKTGYSTGIEVLNNLIDHHPIINLIIEYRQLTKLYSTYLIGIKESVFEDNRVHTIYN 614 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R I Sbjct: 615 QA-LTLTGRLSSLEPNLQNIP------------------------IRTEEGRQIRKLFIP 649 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 V AD + IE RVLA +A +AF +DI+ T K F+ D V EQR Sbjct: 650 EPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQKVFHV--DTVDSEQRR 707 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + G+ S+++ Sbjct: 708 RAKAVNFGII--------------YGIGPWSLSEDI------------------------ 729 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + E + + + ++ E ++ Sbjct: 730 ------GVTVKEAENFISRYLEVYPEIKDYMTNIVEFAKTHGYVETLLN----------- 772 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR ++ L + +Q + DI+ Sbjct: 773 ---------------RRRYIPELSSKVFNLREFGKRTS---------LNAPIQGTAADII 808 Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 M + K ++L VHDE++ E + + ++M K + G+ L Sbjct: 809 KLAMIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIPNIMEKA--FNLGVRL 866 Query: 664 KAEGYEAKRY 673 K + Sbjct: 867 KTSCDVGNNW 876 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 119/699 (17%), Positives = 201/699 (28%), Gaps = 176/699 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQY 60 L ID ET P + L + PV + D +P L + Sbjct: 99 LAIDTETTGLDP----------HSDRLRLIQISAPGIPVLVIDCAAF--LPDGFACLKEL 146 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-----PSSLKNAC-L 114 L + + HN+ F+ +GI I T + A+ + L Sbjct: 147 LNTPS-EKIFHNARFDLQFL---MGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADH 202 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L T+ + S + AW L Y + R Sbjct: 203 YLGIKLDKTE---------QTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLLAR--- 250 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR- 233 L + E G +DL+ +L+ ++ E + + Sbjct: 251 HGLGRTASIEFACVSAIARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTYSGTPSCQ 310 Query: 234 ------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + + L GI + S L+ + L + L R Sbjct: 311 LTLWGGEEALDVNFESNPYVLKLL-NRYGIPVTSTSR----RSLAPYHSQPLVQALTEYR 365 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L+ + + RL GA +GR S Q +PR+ Sbjct: 366 RHSKSLSS-FLHPIPAQIHPVTHRLHPKYMQIGA-WSGRMSCYNPNIQQIPREAD----- 418 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 RSC A +G+KL++AD + IE RV A I+G+ Sbjct: 419 -----------------------FRSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKS 455 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A GED++ T + + P+ +V+K QR K + L + GA+ K A Sbjct: 456 ACQKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYA-------- 507 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + ++ E + A+ ++G+ Sbjct: 508 ------------------------------GQSYGVEMTLEEAEQFRSAFFQSYRGINWW 537 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 DL E + + R+ ++S Sbjct: 538 HHDLRE----------------------------SHPLEGRTLTGRKFLFS--------- 560 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSET 636 T L VQ + DIL + + IV VHDEI+ E Sbjct: 561 ---------PNTGLADLANTPVQGTAADILKHALGLLASRIRGSDKKIVAIVHDEILMEV 611 Query: 637 P-DTPYFSVGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 P + +V L + M + + +P +A+ A + Sbjct: 612 PVEEADDTVVLLKTAMEEAAQAILPDVPCEADAKAADSW 650 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 92/667 (13%), Positives = 181/667 (27%), Gaps = 143/667 (21%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85 + A D +D E +L D H++ G Sbjct: 344 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALAG-RG 402 Query: 86 IDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141 ++ T + + +A LN + + +A++ S + Sbjct: 403 WEVAGLTC-DTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAMLDFGNDSSAE 461 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S +A + + E L L D E + ++ G + Sbjct: 462 SM---------ERAVAVTKLADVMEKEVEARGGSEL--LHDVEMGVQRCLISMERVGIAV 510 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259 D D++ L+ + + + G + L+ LF + ++ Sbjct: 511 DTDILEGLRSEFDERVTRAQGAAWEAA-GEKINLSSPKQLQGVLFEKLDMPKTRRTKSGY 569 Query: 260 -----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L + + LA L+ +R A ++ L + + DGR+ T A Sbjct: 570 TTDADALAGLYEKTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIA 626 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P +R + G Sbjct: 627 -ATGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVVGEGY 661 Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K Sbjct: 662 ESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIK 721 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M GL + Sbjct: 722 AMNYG--------------LAYGLS------------------------------AYGLS 737 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + K+ + + + ++ V + +++ + + Sbjct: 738 NQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVDQARRQGYTETLL--------------- 782 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ + +Q + D++ Sbjct: 783 -----------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADLIKLA 822 Query: 614 MK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + G ++L VHDE++ E V + M +PL Sbjct: 823 MVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVS 880 Query: 667 GYEAKRY 673 + + Sbjct: 881 IGVGRSW 887 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 88/590 (14%), Positives = 160/590 (27%), Gaps = 121/590 (20%) Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 R T V A S + + +A + D Sbjct: 436 RIFDTVVAAYLLDSDRS----------EFDEAYLADTYLQMALPAACGAEGAGEDAPAPA 485 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 A RE + E L + + G +D D + L E Sbjct: 486 ARTAALTLALVAPLRECMARENAANVFDGI--EMPLVPVLAKMERAGMLVDPDRLHSLSE 543 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--DMSE----GTLKSIL 265 +A + +++ I L + L LF + G+ ++ T +L Sbjct: 544 GLATQITEVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVL 603 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 S LIL+ S L+TL DGR+ T + TGR S Sbjct: 604 SDLARDHEIVRLILDWREKSKIKSTYLDTLGPLRRGDGRVHTTYNQT-ITATGRLSSSDP 662 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P V++ A G + D + IE Sbjct: 663 NLQNIP------------------------TRSELGRTVKTAFSAGEGSVFLAVDYSQIE 698 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA ++G++ ++AF GED + T A+ F P+ +V+ + R+ K + + Y Sbjct: 699 LRLLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVYGQ-- 756 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + L + +E + + + + + + + G Sbjct: 757 ---QAYGLSQSLHISMAEARDMIDRYYEAYPGVRTFLDNVVARAKQTGYAETMYGR---- 809 Query: 506 VKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + L + +A + + Sbjct: 810 -----RRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIKI------------------ 846 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + + +L E + ++ Sbjct: 847 --------------AMARVSRRLEEE-------------GFAAHMI-------------- 865 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDE+ E P + + +M +PL AE + Sbjct: 866 -LQVHDELDFECPVDEVERLTAMVRDVMEHVVD--LRVPLIAEASTGITW 912 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 92/667 (13%), Positives = 181/667 (27%), Gaps = 143/667 (21%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLG 85 + A D +D E +L D H++ G Sbjct: 335 SGDVEAVALGCVDGHAVWFDAAELDPEDEKSFAAWLADNECPKAMHSAKGPVEALAG-RG 393 Query: 86 IDIPSKRWICTSVLARTNGL---PSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSID 141 ++ T + + +A LN + + +A++ S + Sbjct: 394 WEVAGLTC-DTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAMLDFGNDSSAE 452 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S +A + + E L L D E + ++ G + Sbjct: 453 SM---------ERAVAVTKLADVMEKEVEARGGSEL--LHDVEMGVQRCLISMERVGIAV 501 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259 D D++ L+ + + + G + L+ LF + ++ Sbjct: 502 DTDILEGLRSEFDERVTRAQGAAWEAA-GEKINLSSPKQLQGVLFEKLDMPKTRRTKSGY 560 Query: 260 -----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L + + LA L+ +R A ++ L + + DGR+ T A Sbjct: 561 TTDADALAGLYEKTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYMQTIA 617 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P +R + G Sbjct: 618 -ATGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVVGEGY 652 Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K Sbjct: 653 ESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHTVTASHVFGVAPEDVSVAQRSKIK 712 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M GL + Sbjct: 713 AMNYG--------------LAYGLS------------------------------AYGLS 728 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + K+ + + + ++ V + +++ + + Sbjct: 729 NQLKVSVGEAKELMAGYFSRFGKVHEYLEEVVDQARRQGYTETLL--------------- 773 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 RR D+ + +Q + D++ Sbjct: 774 -----------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADLIKLA 813 Query: 614 MK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 M + G ++L VHDE++ E V + M +PL Sbjct: 814 MVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHAME--LSVPLTVS 871 Query: 667 GYEAKRY 673 + + Sbjct: 872 IGVGRSW 878 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 90/658 (13%), Positives = 177/658 (26%), Gaps = 135/658 (20%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKK 82 +A QA I + + V + S LL+ L V ++F+ + Sbjct: 337 FAGQAGIDGIGLCFSKKDVYCIRAGQG-IELSWLLEQLE--GVAKDAGRFAMFDIKEALE 393 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 + I +V A S + + + ++ Sbjct: 394 HIRIA-RQDNCFDVTVAAYLLNPLKS-----------NYTYEDVA---------REQLNL 432 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYR 200 D A ++ + Y + L + L+ D E L + G R Sbjct: 433 IIEDKLDAWMKACYEAYTAYAA-SGILWKRLKECLMDRLFMDVEMPLVFTLYDMEVNGVR 491 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 ++ + + + + + +L++DI + G + L + LF I ++ Sbjct: 492 VEAEALKYYGDQLGAKIVELEKDIYEEA-GENFNINSPKQLGVVLFENMKIPGGKKTKTG 550 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L IL + + L+ + DGR+ + T Sbjct: 551 YSTAADVLEKLAPDYPIIAKILEYRQYTKLKSTYADGLANYIREDGRIHSKFNQT-ITAT 609 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R I +G V Sbjct: 610 GRLSSTEPNLQNIP------------------------IRVELGRLIRKVFIPEDGFVFV 645 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +G+ I+A+ +DI+ T ++ F+ P D+V+ +QR K + Sbjct: 646 DADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFDEVTDQQRRNAKAVNF 705 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y + L + + + F + + E Sbjct: 706 GIVYG-----ISSFGLSQDLSITRKEASKYIEDYFTAYPGIKIFLDDTVKHAKEMGYVVT 760 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556 L G + + + +A + + + Sbjct: 761 LFGRRRPV---------PELSSSNYMQRSFGERVAMNAPIQGTAADIIKIAMTGV----- 806 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RRL +K Sbjct: 807 --------GRRLKEQKMKSRLV------------------------------------LQ 822 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E V + M + S +PL+ + + + + Sbjct: 823 VHDE-----------LLVEAYKPELDQVKKILKEEMEQAAS--LDVPLEIDMHTGENW 867 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 96/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 27 QAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 + + A + + + D E A S L LR + + H+S + + ++LG Sbjct: 341 HGDVRILAVSGAPDEAWVVDLAEAGEADVSKLSSALRSK--TLILHSSKTQIKAW-RSLG 397 Query: 86 IDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSID 141 +D+ T++ A L+ + + G+ + + Sbjct: 398 LDVDDVA-GDTALAAYLLVPDQRSYELQQIALERAGIELSDAESDSGQLALDLESDQTAQ 456 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + V + R++ E L + + G + Sbjct: 457 THGHRAAALLEVHDILAAKIDEANMSQVYRDI----------ELPLVPVLARMELAGIAV 506 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259 D + L + ++ E + + + L+ LF + ++ Sbjct: 507 DEAGLSGLIDEFTKQANASAELAYEAIGHEV-NLGSPKQLQTVLFDELDMPKTKRTKTGY 565 Query: 260 -TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T L+ + L+ R ++ + L + V+ DGR+ T Q A Sbjct: 566 TTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQT--VVGLLKTVAEDGRIHTTYQQTVA- 622 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN--- 372 TGR S QN+P + +R IA Sbjct: 623 ATGRLSSLDPNLQNIP------------------------VRTESGRRIREIFIADPHVD 658 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 +L+ AD + IE R++A ++G+ I+AF +GED++ +K F ID+V R+ Sbjct: 659 DARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKV 718 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K M L GL Sbjct: 719 KAMSYGLV--------------YGLS------------------------------AYGL 734 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + + + + + V ++ E + Sbjct: 735 SRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTETIM-------------- 780 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR + D L + +Q + DI+ Sbjct: 781 ------------GRRRYLPALHSDRRQLRDMAERA---------ALNAPIQGSAADIMKI 819 Query: 613 GMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 M + ++L VHDEI+ + SV + M +PL Sbjct: 820 AMLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSAFE--LDVPLDVNV 877 Query: 668 YEAKRY 673 + Sbjct: 878 GTGTSW 883 >gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 645 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 111/729 (15%), Positives = 208/729 (28%), Gaps = 178/729 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQ---------AVITLCAYAWDDEPVKLWDRTEQ---- 50 + D ET Y A I +++ + + Sbjct: 22 IAFDFET--------APREKYRRDEKAALDAHKADIAGVSFSVSEGTAVYVPLKHKTGKN 73 Query: 51 ----SAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + L + + V+ +AHN FE + LG+ + T + A L Sbjct: 74 AGSPDKIMQWLSENVFANRKVVKIAHNLSFEAMFL-YALGVVLQP-PCYDT-IAAALMTL 130 Query: 106 PSSLK--NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 S+ + + G L + + Q + Y Sbjct: 131 KSNTAFRTLADS-GLKTLTQE-LFGVDLPSFETVTA-----GRYFDELDPQDEETVR-YA 182 Query: 164 KRDVEATRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 D + T L+ E + + G D +L+LK Q Sbjct: 183 CADSDYTLRLYHLFNNWFNRYLPKHRFIVEKLESPAAVYCGLMKYNGLLADEELMLKKQA 242 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVDMSEG-----TLKSIL 265 + +L +I L + + T A + YL+ + + + ++++ Sbjct: 243 EAEGKLAELRGNIAFLIGDVNIGANASTSAFKKYLYDDLKLPVFKTTAKYQEAMDDEAMI 302 Query: 266 SHSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 S + + +L+ ++ E ++S GR+ + G + T Sbjct: 303 LLSEWCRENRPELAELFELVQEYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLG-TET 361 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR++ QN PR++ VR+ IA GK L+ Sbjct: 362 GRFAARNPNLQNCPRKDNDPVG------------------------VRNFFIAPKGKALL 397 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRA 430 D + IE RV A+ ++ ++ + G DI+ T + + P + + KE+RA Sbjct: 398 SLDFSQIELRVGAFYCRDERMLETYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRA 457 Query: 431 IGKVMELALGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 I K + Y K + + GLD Sbjct: 458 IAKNCNFGVFYGLFPKGLHRNLKFKAGLDTPLS--------------------------- 490 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 CE + +A + ++Q + + + Sbjct: 491 ------------ECERIIANLKAGYPRLVQWQ---EKTKKRAASRRYTETWL-------- 527 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ A+S ++ +Q + DI Sbjct: 528 ---------------GRRRYLPDI---------ASSDWGKKSFAERCALNTPIQGTAADI 563 Query: 610 LCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663 L + + VL +HDE+V E P+ + S M + P +P+ Sbjct: 564 LKLALGRIIEGLPQRMRLRPVLQIHDELVFEVPEDKVHEAAVFIKSCMEERPFEEFDVPI 623 Query: 664 KAEGYEAKR 672 AE R Sbjct: 624 VAEAAFGVR 632 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 90/678 (13%), Positives = 192/678 (28%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEIFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ ++ ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K N + E +D + L+ Sbjct: 440 NREDEFLK-----------------IKEVNIMPNLYKVLEEKIKDQDMEELLY------- 475 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 476 KVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R+ K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVYKDELEKIKALVEKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191] gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191] Length = 862 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 83/639 (12%), Positives = 165/639 (25%), Gaps = 146/639 (22%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNG 104 D Q + + + ++ ++ + ++ + L + + A + Sbjct: 351 DNLTQEELLK-IEELANNKQILKI----SYDVKFTLRALDVTPKEIINCFDVRLAAYSLN 405 Query: 105 LPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + K E K + ++ F + Sbjct: 406 PGADIGFKALAAQY-LDVI----IEPKDEKEFLTLQNQYIWSLKEVLERDLKEKDQFKIF 460 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + E L + + + G +D + + + E + Sbjct: 461 N------------------ELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQN 502 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 DI K I + L LF + V ++ T + +L IL Sbjct: 503 DINKDAQREI-NVNSPKQLGALLFDQLKLPSVKKTKTGYSTDEEVLQQLVNLHPIVKKIL 561 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 +++ ++ L + R+ L G + TGR S QN+P Sbjct: 562 EYRSNAKLKSTYVDNLIMLADGNSRVHTYLDQTG-TVTGRLSSSSPNLQNIP-------- 612 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GK L+ D + I+ R+LA + + + Sbjct: 613 ----------------IRTPKGRMLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLV 656 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF G DI+ T A+ F + VS E R+ K + + Sbjct: 657 NAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAKAINFGII------------------- 697 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + A ++GV + Sbjct: 698 -------------------------YGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVRE 732 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + R ++ Sbjct: 733 WIDKNIALARERGYVKTLLGHIRYLPEFKMGS---------------------------- 764 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSE 635 S R IVQ S D++ + M + + ++L VHDE++ E Sbjct: 765 -GHMASFAQRAAI------NTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFE 817 Query: 636 TPD-TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P+ + + M +PL AE + Sbjct: 818 LPEKNLLKEAAVIKNKMEHTIE--LKVPLLAEAKTGVNW 854 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 99/661 (14%), Positives = 192/661 (29%), Gaps = 142/661 (21%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + A E V + S + L ++L ++ + + G Sbjct: 357 PSLVGFGLASATETV-YVPWEDGSHHGAALTEWLASPAR-KCFFHAKPQFKTLLRA-GFA 413 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + T + + S+ ++ + G+ L D Sbjct: 414 VDGLAF-DTRIASWLVKPGSAPQSLAEQVW-------EVLGETL------PVSDPNQLVP 459 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLV 206 A + + D +AT L +R + D E L + + G ID + Sbjct: 460 LADAVSPATEAWFVRRVADGQAT-ALDERTRAVLDEIELPLVAVLAEMELNGVAIDAVAL 518 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKS 263 +L++ + + L I + L+ LF G+ T + Sbjct: 519 TRLRDRLTGKASDLAARAYAEIGHEI-NLGSPKQLQQVLFEELGMPKTRSTKTGYSTDAA 577 Query: 264 ILSHSNITQLAK---DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ L+ +R A+ I + TL +V+ DGR+ T G + TGR Sbjct: 578 SLADLQEKSPHPFLGLLLQHRDATKLKQI--VETLERSVTGDGRIHTTYDQTG-TSTGRI 634 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +RS ++ + L+ A Sbjct: 635 SSNDPNLQNIP------------------------IRTEEGREIRSSFVSGGEDETLLTA 670 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF GED++ ++ F P ++V+ R K M L Sbjct: 671 DYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTKVKAMSYGL 730 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL S+ ++ ++ Sbjct: 731 --------------AYGLSAFGLSKQLRIETS---------------------------- 748 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + + V +++ E D Sbjct: 749 --EARELMNGYFERFGAVRDYLRNVVEQAR--------------------------LDGF 780 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-- 617 RR ++D+ L + +Q + DI+ M Sbjct: 781 TETIFGRRRPFADLTSTNRVLRENAERQ---------ALNAPIQGSAADIMKIAMLGIAG 831 Query: 618 ----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 + G ++L VHDE++ E ++ T+ M +PL + Sbjct: 832 DMSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVRARMVGAAD--LRVPLDVQIGRGST 889 Query: 673 Y 673 + Sbjct: 890 W 890 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 93/652 (14%), Positives = 167/652 (25%), Gaps = 124/652 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A P +D E +L D V H++ +F + G I Sbjct: 365 VALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVFAEH-GWSIEGV 423 Query: 92 RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A L L E +A ++ Sbjct: 424 TM-DTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAVA-DGQLAFGADEGAEAEALMVQ 481 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + FG + A L D E L + G D + Sbjct: 482 ARAILDLGEAFGSRLEEVGAADL--------LRDMELPTSALLARMERHGIAADRAHLEA 533 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSIL 265 ++++ A ++ ++ + L+ LF + ++ T L Sbjct: 534 MEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKRTKTGYTTDADAL 592 Query: 266 SHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + ++L + + + L + +++DGR+ T A TGR S Sbjct: 593 AWLATQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSST 650 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382 QN+P +R + G + L+ AD + Sbjct: 651 DPNLQNIP------------------------VRTDEGRAIRRGFVVGEGFESLLTADYS 686 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RV+A ++ ++ I+AF +GED++ T A+ F V E R K M L Y Sbjct: 687 QIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAYG 746 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 L+++ + FE + + + D+ L G Sbjct: 747 -----LSAFGLSQQLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATLFGR- 800 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + E + Sbjct: 801 --------RRYLPDLSSDNRQRREAAERMALNAPIQGTAADIV----------------- 835 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 ++ V G D+ + Sbjct: 836 ----KIAMLKVDGALRET---------------------------DLASRMLLQVHD--- 861 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 EIV E +V L M +PL + Sbjct: 862 --------EIVLEVAPGERPAVEELVRREMADAVR--LRVPLGVSVGVGPNW 903 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 175/644 (27%), Gaps = 126/644 (19%) Query: 44 LWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D T + +L D + H++ G + T + A Sbjct: 355 WVDLTALDPAGEAAVGAWLEDASRPKAMHDAKGPIEALA-ARGWILRGLT-SDTQLAAYL 412 Query: 103 NGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L + L T G+ ++ + + RA V+ Sbjct: 413 VKPDQRTYHLDDLVLRHLRRELSATTDTHGQGMLDFAGDADEKAALKEMVRATAVRDLA- 471 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 D + L+ D E L + + G +D+D + L+E A + Sbjct: 472 ----AVLDEQVAATGGTELLS--DIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVT 525 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-------LVDMSEGTLKSILSHSNIT 271 + +D G + L++ LF G+ L + + + Sbjct: 526 QAQQDCWDAIGGDQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHP 585 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L + +L ++ + + L ++VS DGR+ T A TGR S QN+P Sbjct: 586 FL--EALLRHRDAAKLRVT-VEGLQKSVSDDGRIHTTYLQTIA-ATGRLSSTEPNLQNVP 641 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 +R + +G L+ AD + IE RV+A Sbjct: 642 ------------------------IRTEEGRRIRELFVVGDGYDALMSADYSQIEMRVMA 677 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G+ I+AF +GED++ ++ F + V+ R+ K M L Y Sbjct: 678 HLSGDSGLIEAFRSGEDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYG-----LSA 732 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + F + ++ + + + G Sbjct: 733 YGLSKQLAISTEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMFGR--------- 783 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + E + L Sbjct: 784 RRYLPDLTSDNRQRREMAERMA-----------------------------------LNA 808 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + A + R T G T ++Q VHD Sbjct: 809 PIQGSAADIMKVAMIGVDRTLTEAGARTRILLQ------------------------VHD 844 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E V + M +PL + + Sbjct: 845 ELVLEVAADEQADVERIVREQMGHAAE--MDVPLDVNIGVGRSW 886 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 100/658 (15%), Positives = 184/658 (27%), Gaps = 156/658 (23%) Query: 39 DEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 ++ D T+ + L ++ T VAH+ + + + T Sbjct: 340 NDSAIWVDLTDLDENSFNALDTFI--STKKVVAHDVK--PQVHAWVERGFTQPRPIMDTE 395 Query: 98 VLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + A SL + L D + Sbjct: 396 LAAYLLAPDARGYSLADMASDLGV-----------------VLEEDRDLLTDVGEQLGHR 438 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 AW Y + + R L + DG E + + G ID ++ +L Sbjct: 439 AWVTVALYPRLRQDLER---NHLQDVLDGIEIPTQEILARMEIAGIAIDQSVLNELITEF 495 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILS 266 ++ + + + L+ LF + ++ +L +L Sbjct: 496 EAAAQQSASEAYASIGHEV-NLNSPKQLQTVLFDELNMPKTKRTKTGYTTDADSLADLLV 554 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + L L+ +R + + L + V+ DGR+ T A TGR S Sbjct: 555 KTQHPFLEH-LLAHRDRTKLKQT--VVGLQKVVADDGRIHTTYLQTVA-ATGRLSSKDPN 610 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKK-LVVADLAG 383 QN+P A +RS A +G + L+ D + Sbjct: 611 LQNIP------------------------VRTDAGRRIRSVFQAAQDDGYESLMSVDYSQ 646 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G++ I+AF +GED++ + F PI+ V+ +QR+ K M L Sbjct: 647 IEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVTDQQRSKVKAMSYGLV--- 703 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 GL + + + Sbjct: 704 -----------YGLS------------------------------AYGLSRQLGIPTGEA 722 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + A+ V + + E + Sbjct: 723 SALMDDYFARFGAVKEYLDQVVEEAR--------------------------GRGYTETM 756 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RR ++ D L + +Q + DI+ MK Sbjct: 757 YGRRRYLPQLRSDRRQLREMAERA---------ALNAPIQGSAADIMKIAMKRVDDALRE 807 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDEI+ E V L M++ +PL ++ Sbjct: 808 AELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQAAD--LSVPLDVNVGVGPNWQ 863 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 91/601 (15%), Positives = 168/601 (27%), Gaps = 142/601 (23%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205 + Q + ++ L L + + E + + + G +DL + Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262 + +LQ + + + G + L++ LF G+ ++ T Sbjct: 527 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585 Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L +L + + ++ L +AV++DGR+ T A TGR Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P A +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL + + K+ Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A+ A+ GV + + E + Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR ++ R +Q + DI+ M K Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E V L M +PL+ + Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898 Query: 673 Y 673 + Sbjct: 899 W 899 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 97/632 (15%), Positives = 169/632 (26%), Gaps = 140/632 (22%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 +L D V HN+ +F + G + T++ A +L Sbjct: 389 FATWLADPAKPKVLHNAKGVMRVFAEH-GWTVEGVSM-DTALAAYLVKPGRRSFALDALS 446 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L +G +A ++ + + FGE K A Sbjct: 447 LEYLGRELEPAATADG--QLAFGADEGAEADALMVQARAILDLGEAFGERLKEVGSADL- 503 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L D E L + G D + ++++ A ++ ++ Sbjct: 504 -------LRDMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQQAVKEAHAAAGHEF 556 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASSGS 287 + L+ LF G+ ++ + ++L + Sbjct: 557 -NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKL 615 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + + L + +++DGR+ T A TGR S QN+P Sbjct: 616 RVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP---------------- 657 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GE Sbjct: 658 --------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGE 709 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T ++ F V E R K M L GL SQ + Sbjct: 710 DLHTTVASQVFGVERSAVDAEMRRKIKAMSYGL--------------AYGLSAFGLSQQL 755 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + GV + + Sbjct: 756 NIDAG------------------------------EARALMDTYFERFGGVRDYLRRAVD 785 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR D+ D Sbjct: 786 EARATGYTETLF--------------------------GRRRYLPDLNSDNR-------- 811 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 R T +Q + DI+ M N + ++L VHDEIV E Sbjct: 812 -QRRETAERMALNAPIQGTAADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGE 870 Query: 641 YFSVGTLCSL-MTKNPSWAKGLPLKA---EGY 668 L M PL +G Sbjct: 871 RAKTEELVRREMASAVQLRA--PLDVSVGDGG 900 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 250 bits (638), Expect = 7e-64, Method: Composition-based stats. Identities = 96/656 (14%), Positives = 195/656 (29%), Gaps = 129/656 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A D++ V D Q + + L + + + +N + K GI I Sbjct: 328 LMGVALACDEQ-VYYVDIEHAQDDVITPLKDFFKRKDTEFYGYNIKRDHHALKNA-GIHI 385 Query: 89 PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + ++ + S + + E K GK + + SP Sbjct: 386 DNITL-DLALAEHLINGGAKISYQTLLVDHGLMESAGKY--GKE-WGQLSLPILKSP--- 438 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A + + K+ + ++ + E L + TI G +D++ + Sbjct: 439 AKPAEYFGEFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLENVLFTIERNGMPLDVEDL 498 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L+ +++E L +DI G + + L L+ G+ +D + T +L Sbjct: 499 QELERTLSEELAILTDDIY-TLAGASFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLE 557 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + IL A + L + R+ T G + TGR + Sbjct: 558 ALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDP 616 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGI 384 QN+P +R + AD + I Sbjct: 617 NLQNIP------------------------IRSERGRLLRKAFRDTRQNNYFLSADYSQI 652 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R LA ++ ++ AF + ED++ T ++ F+ P+++V+K+QR K + + Sbjct: 653 ELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII---- 708 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 Q + K+ + + Sbjct: 709 ----------------------------------------YGQQAYGLSKILKISVSEAQ 728 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + A+ ++ V + + ++ + Sbjct: 729 KLIDAYFDRYPAVARFIDETISQA--------------------------CENLRVKTLL 762 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 R + N R + G +Q + +++ M Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLADALEKR 812 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L +HDE++ E P+ V TL +M +PL K + Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 250 bits (638), Expect = 7e-64, Method: Composition-based stats. Identities = 82/588 (13%), Positives = 155/588 (26%), Gaps = 132/588 (22%) Query: 94 ICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 V A ++ L LI + S + T Sbjct: 404 FDVIVAAYLLNPLKSDYDYEDVAREQLGL------------LIDEKTEESTKACYEAYTA 451 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 V+ + +L + E L + G ++ + + Sbjct: 452 YMAVEPLNR---------KMEETGMTKLFR--EIEMPLVFTLYEMEQAGIHVEGEALKAY 500 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 + + +L+++I + G + L + LF + ++ T +L Sbjct: 501 GDQLGNRIVELEKEIYDMA-GETFNINSPKQLGVILFEKLEMPHAKKTKTGYSTAADVLD 559 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 IL + + L+ + DGR+ G + TGR S Sbjct: 560 KLAPEYPIVAKILEYRQLTKLKSTYADGLATFIGPDGRIHGKFNQT-ITATGRISSTEPN 618 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R + G V AD + IE Sbjct: 619 LQNIP------------------------VRMELGRLIRKVFVPKEGCVFVDADYSQIEL 654 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA +G++ I+A+ DI+ T ++ F+ P D+V+ QR K + + Y Sbjct: 655 RILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNFGIVYG---- 710 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + L + + FE + ++ E L G + Sbjct: 711 -ISSFGLSQDLSITRKEAARYIEHYFETYPGIKTFLDQCVADAKEKGYAVTLFGRRRPV- 768 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + Sbjct: 769 --------PELKSSNFMQRS---------------------------------------- 780 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 G+ +N K+ V D + + ++L Sbjct: 781 -------FGERVAMNAPIQG---TAADIIKIAMIRV----SDEMKK-----QNMKSRMIL 821 Query: 627 TVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E + V + M S +PL A+ + K + Sbjct: 822 QVHDELLIEAAEEEVDEVKKILKEEMEHAAS--LSVPLLADMHTGKNW 867 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 91/601 (15%), Positives = 168/601 (27%), Gaps = 142/601 (23%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205 + Q + ++ L L + + E + + + G +DL + Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262 + +LQ + + + G + L++ LF G+ ++ T Sbjct: 527 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585 Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L +L + + ++ L +AV++DGR+ T A TGR Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P A +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL + + K+ Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A+ A+ GV + + E + Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR ++ R +Q + DI+ M K Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E V L M +PL+ + Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898 Query: 673 Y 673 + Sbjct: 899 W 899 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 91/601 (15%), Positives = 168/601 (27%), Gaps = 142/601 (23%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + Sbjct: 418 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 465 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205 + Q + ++ L L + + E + + + G +DL + Sbjct: 466 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 525 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262 + +LQ + + + G + L++ LF G+ ++ T Sbjct: 526 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 584 Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L +L + + ++ L +AV++DGR+ T A TGR Sbjct: 585 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 642 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P A +R + +G +L+ A Sbjct: 643 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 678 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 679 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 737 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL + + K+ Sbjct: 738 -------------LAYGLS------------------------------AYGLSQQLKIS 754 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A+ A+ GV + + E + Sbjct: 755 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 793 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR ++ R +Q + DI+ M K Sbjct: 794 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 839 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E V L M +PL+ + Sbjct: 840 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 897 Query: 673 Y 673 + Sbjct: 898 W 898 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 250 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 89/628 (14%), Positives = 165/628 (26%), Gaps = 142/628 (22%) Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LALNFSE 120 + V HN+ +F + G + T++ A +L L+ Sbjct: 397 SKPKVVHNAKGLMRVFPEH-GWSLAGVAM-DTALAAYLVKPGRRSFALDVLSMEYLHREL 454 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +A + ++ + F A L Sbjct: 455 QPA---AQDGQLAFGSDDTAEAEALMAQARAVLDLGDAFTGRLAEVGAAEL--------L 503 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E L + G D D + +++ A ++ ++ + Sbjct: 504 HEMELPTSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPKQ 562 Query: 241 LRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L+ F + L + + ++ ++L + + + Sbjct: 563 LQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPV--IMLRHREQAKLRVT-VE 619 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + + +DGR+ + A TGR S QN+P Sbjct: 620 GLVKTIGADGRVHTSFSQIVA-ATGRLSSTDPNLQNVP---------------------- 656 Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T Sbjct: 657 --VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTV 714 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 ++ F +V E R K M L GL SQ + Sbjct: 715 ASQVFGVERGEVDPEMRRKIKAMSYGL--------------AYGLSAFGLSQQLNIDPG- 759 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + + + + GV + + E Sbjct: 760 -----------------------------EARGLMETFFERFGGVRDYLQRVVEEARATG 790 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + RR D+ D A ++ Sbjct: 791 YTQTVL--------------------------GRRRYLPDLNSDNRMRREAAERM----- 819 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 +Q + DI+ M K ++L VHDEIV E V Sbjct: 820 ----ALNAPIQGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIAPGERKKVEE 875 Query: 647 LCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 L M PL + Sbjct: 876 LVRREMGAAVELRA--PLDVSVGVGPDW 901 >gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] Length = 512 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 76/619 (12%), Positives = 167/619 (26%), Gaps = 137/619 (22%) Query: 75 FERILFKKTLGIDIPSKRWI----CTSVLARTNGLPSSLKNAC----LALNFSEHLTKME 126 F+ + +G+ + + ++ + F ++ Sbjct: 7 FDLK--RNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEII 64 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 GK + T+ + + + + + ++L + E Sbjct: 65 YGKGKKQ-HSVDVDTLYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIP 116 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 + ++ + G ++ ++K++ + L I +L + L + LF Sbjct: 117 IAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILF 175 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ T +L IL+ S +N L + + +DG Sbjct: 176 EKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADG 235 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 ++ + TGR S QN+P Sbjct: 236 KIHTRFLQT-LTTTGRLSSVEPNLQNIP------------------------VKLEEGKQ 270 Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI- 421 +R + L D + +E RVLA ++ E ++AF G DI+ T K F Sbjct: 271 IRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNL 330 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D+V+ R K + G+ ++N Sbjct: 331 DEVTPLMRRHAKAVNF--------------GIVYGISDYGLAKN---------------- 360 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + + ++ + K + + Sbjct: 361 --------------LGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH-- 404 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 RR + D+ + + R + Sbjct: 405 ------------------------RRRLLPDIHNKNFNIRSFA---ERTAI------NSP 431 Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K ++L +HDE++ + P + TL +M + Sbjct: 432 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPEIMQQA 491 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL A+ + Sbjct: 492 AQ--LDVPLIADANWGHNW 508 >gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1] gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1] Length = 925 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 104/766 (13%), Positives = 210/766 (27%), Gaps = 198/766 (25%) Query: 2 SKLFIDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA- 52 S++ ID+ET P + K + AY ++Q I + + Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266 Query: 53 --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L E + +AHN F+ + +L I + + W T ++ Sbjct: 267 MPGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDTLIW-DTMLIHYLCI 325 Query: 105 L----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 LK+ + + P + + W + Sbjct: 326 TEEKGTHGLKDLAW---LETD---------MGGYDDALDGEKPKGEDEGNYDLIPWDILK 373 Query: 161 EYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L ++ IPL + + I G +D + + L Sbjct: 374 VYLADDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVL 433 Query: 210 QELIAQERKKLDEDIVKLTD---------------------------------------- 229 + +E +L++ + + + Sbjct: 434 RVSYEKEISRLEDKMREFPEVVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKY 493 Query: 230 -----GIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILN 280 G + T L LF G++ + T L +++ Sbjct: 494 DPSKGGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLME 553 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ ++ LS + D + + +G + TGR S Q PR+ + + Sbjct: 554 FRKANHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLF 612 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + + +G +V D + +E R+LA I + I Sbjct: 613 QYNFEIKKMFNSRFG----------------DGGVIVQFDYSQLELRILAVITQDPTLID 656 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 + +G D++ + AF I++VSK+QR K ++ + YQ A+ G+ Sbjct: 657 LYRSGADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI--- 713 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + CE+ K + + V + Sbjct: 714 ------------------------------------TMSEDECEIFIKKYFKRFPKVSKW 737 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 +D + R D+ Sbjct: 738 IRDTKKHVKRHKYVKTLT--------------------------GRTRNLPDIDSIDQSK 771 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVS 634 ++ R+ +Q D + + I +TVHD IV Sbjct: 772 ---ANEAERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVL 822 Query: 635 ETPDTPY-FSVGTLCSLMTKNPSWAK------GLPLKAEGYEAKRY 673 + P + +M + + +P+ +E + Y Sbjct: 823 DCPKDEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNY 868 >gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] Length = 642 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 97/724 (13%), Positives = 195/724 (26%), Gaps = 161/724 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQS------- 51 + DIE ++ A I + + + ++ Sbjct: 23 KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82 Query: 52 -AMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 M + L + +E+++ VAHN FE GI I + T G + Sbjct: 83 HRMIAWLKGFVFHNESLIKVAHNIAFESSFL-YEYGIVIK-EPVFDTM-----LGSMLTF 135 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K+ E K+ K + H + + Y D + Sbjct: 136 KSFGEFRTLRECGLKLLA-KEIFNEDLPSFSHVVNGTHFDNLHSEHKETVR-YACADSDY 193 Query: 170 TRELFKRLIPLSDGERDLWLLDQ------------TINDRGYRIDLDLVLKLQELIAQER 217 L+ + + L + G ++ +L+ + +E Sbjct: 194 ALRLYNWCLEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEEL 253 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMY---LFLITGID--------LVDMSEGTL----K 262 + +I+ + + + + + LF + + + +L + Sbjct: 254 EFCKREILSFANREV-NLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDE 312 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 L + + I S + L + + G++ F + TGR+S Sbjct: 313 WCLRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDF-FSMGTETGRFS 371 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QNLPR++ +R I S + D Sbjct: 372 SRNPNLQNLPRKDNDHLG------------------------IRKLFIPSPNHVFLDFDF 407 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKV 434 + IE RV A+ + I AF DI+ T + +N P+++ + K++R I K Sbjct: 408 SQIELRVGAYYCRDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKN 467 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + K + + G Sbjct: 468 CNFGVFFGLFPKGLQKTLMYKG-------------------------------------- 489 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + CE + + + + + KD + A Sbjct: 490 GINISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRT---------------- 533 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+K + + +Q + DI+ M Sbjct: 534 ----------GRRRYLKDIK---------SKDWNKRAVSERCALNTPIQGTAADIIKIAM 574 Query: 615 KNA-----TKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGY 668 + +L +HDE++ E + ++ + M + P +PLK E Sbjct: 575 ARILRELPEREYIKPLLQIHDELLFEVREDKVNEAIAFIKDCMERTPFKDFNIPLKVEYS 634 Query: 669 EAKR 672 Sbjct: 635 VGYN 638 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 131/717 (18%), Positives = 216/717 (30%), Gaps = 177/717 (24%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW---DRTEQSAMPSDLLQYLR 62 +DIET P I+L A + PV L T + + L +++ Sbjct: 71 LDIETTGLDPHTS----------EISLIQIAAPNRPVILIEFRSITHKES----LRRFIE 116 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA--CLALNF 118 + V HN FE K LGI+ WI T ++A+ GLP +L++ L Sbjct: 117 HHKIPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPI 176 Query: 119 SEHLTKMEEGKALIARF----------CKGSIDSPPYDCTRANHVQAW-----QLFGEYC 163 ++ K L + + Y ++ V W Q +Y Sbjct: 177 PNLNQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQLQYA 236 Query: 164 KRDVEATREL---------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D L +L E + G +DLD +L + I Sbjct: 237 ANDAAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIE 296 Query: 215 QERKKLDEDIVK-----------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 R+ + + + + L GI S+ TL Sbjct: 297 TRREDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTNSTSKDTLDK 355 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + + I+ S + L V+ R+ + A +GR+S Sbjct: 356 LSENHPEVF----TIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRA-ASGRFSF 410 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 Q +PR+ RSC + ++G KL++AD + Sbjct: 411 SNPNLQQIPRE----------------------------RQYRSCFVPASGYKLIIADYS 442 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+ A IA + I A+ N +D++ T A P+D+V+K++R +GK + L Y Sbjct: 443 QIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYG 502 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GA + A E K+ Sbjct: 503 MGATKLRIYA--------------------------------------ETNYGVKMSIEE 524 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + G+ Q +D + + + I Sbjct: 525 AQRFRDNFFKGYPGLHQWHQD------TAFKLRTT------------------KVKDIRT 560 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----AT 618 S R + D S L VQ S DI + Sbjct: 561 LSGRLRRWKDEPPLTS------------------LLNTPVQGTSADITKLALHKLNTDLD 602 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS-WAKGLPLKAEGYEAKRY 673 + G ++ VHDEIV E P+ T L M + K +P+ E A + Sbjct: 603 ELGGFPIVVVHDEIVLEVPEVHVAEGSTMLEEAMISAGKRFLKSVPVVVEATIADTW 659 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 94/668 (14%), Positives = 177/668 (26%), Gaps = 156/668 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A + + L +L D V H + + +G+++ R Sbjct: 341 VAVGAPGGKAWV---RQWKDDAEALGAFLADPGRPKVLHGAKGAGHAL-RNIGVELDGVR 396 Query: 93 WICTSVLARTNGLP---SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T + A L + L K + +D Sbjct: 397 -RDTLLQAYLLHPDQRVYDLDDLVIRYLGREIEGRK---------------SPATLFDDV 440 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 ++ A ++ L D E + + D G +D L+ + Sbjct: 441 DSDDGAAAAAALVELADAFDSELAERGEDGALLDLEMAVSRTLGEMEDAGIAVDEGLLEQ 500 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSIL 265 L++ G + + L+ LF G+ + T L Sbjct: 501 LRQDFDGRVFAAARSAYDAIGGEV-NLSSPKQLQEVLFDQLGLPPTRKMKSGHTTNADAL 559 Query: 266 SHSN-------------ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ Q L+ +R A + L +V DGR+ T Q Sbjct: 560 ANLAVSIAGREDDKALAGQQFLASLLEHRDAIKLRQS--VVGLQRSV-RDGRIHTTFQQT 616 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A TGR S QN+ +R+ + Sbjct: 617 AA-ATGRLSSTDPNLQNI------------------------HARTAEGRSIRAAFVPGE 651 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + ++ AD + IE R++A ++G+ I+AF G D++ ++ + P +KV+ + R+ Sbjct: 652 GYESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSH 711 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K M L GL Sbjct: 712 IKAMSYGL--------------AYGLS------------------------------AYG 727 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + ++ + + + ++ V L + + Sbjct: 728 LSKQLRISVAQAQALMDDYFSRFGRVRTYLDSLVQEARKEGYTQTIL------------- 774 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 RR D+ A R +Q + D++ Sbjct: 775 -------------GRRRYLPDLNSTN---RQAREAAERMA------LNAPIQGSAADVIK 812 Query: 612 EGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666 M + ++L VHDE+V E +V + M A +PL Sbjct: 813 LAMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAVVRREMENAVELA--VPLSVG 870 Query: 667 GYEAKRYR 674 +R Sbjct: 871 IGVGSSWR 878 >gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] Length = 857 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 96/658 (14%), Positives = 171/658 (25%), Gaps = 150/658 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A A D V A L Q A + K L Sbjct: 334 PQIRDMAVAVD-GQVVHLSAPHIPAYLERLPQA---------AQIITADGKRLYKVLRTG 383 Query: 88 IPSKRW-ICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + + A +L Sbjct: 384 KRPAPFPADVVLGAYLLDPTRTSYALSYLATRF-------------------------EV 418 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P A V A LF EA + F E L + G+ +D Sbjct: 419 PLPEGAAPSVCAEALFAAQVWEKEEAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDT 478 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + ++ + + L+ +I + + L LF + + + ++ T Sbjct: 479 ARLQAMKTALTAQAAALENEIYEAAGAAF-NINSPKQLGHMLFEVLHLPVRKKTKTGYST 537 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +L A + I+ A L+ L + GR+ + + TGR Sbjct: 538 DAEVLESLRDAHPAVEKIVRFRALKKLISTYLDGLEPLIVPATGRVYTSFHQTV-TATGR 596 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378 S QN+P +RS + G ++ Sbjct: 597 LSSSDPNLQNIP------------------------IRTEQGKKIRSLFVPGKGYDYILS 632 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA ++ + I F +DI+ T ++ F+ P ++V+ E+R+ K + Sbjct: 633 GDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKAVNFG 692 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y + + + S F + + + Q E + + Sbjct: 693 IIYG-----ISDFGLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKETGITRTM 747 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G L + + Sbjct: 748 FGRMRTLT---------DINSKNFTRRSLAERM--------------------------- 771 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +NT KL N VQ + Sbjct: 772 --------------------AMNTPIQG---SAADIIKLAMNAVQ-----------RELE 797 Query: 619 KN--GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +++ VHDE+V E P V T L M + + +PL A+ + K + Sbjct: 798 QRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEAVT--LSVPLIADLHYGKNW 853 >gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 842 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 83/669 (12%), Positives = 176/669 (26%), Gaps = 157/669 (23%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 K+ + + E + + + ++ + D++ + + L V+ + H+ R Sbjct: 315 KIAIHCHFENNRLNKISLSCSEDNIFYIDQSCLQDALTIINSTLFSNGVLKIVHDI---R 371 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 + + I+ +++ + L Sbjct: 372 KIREIFPTIERVLDSIDDLMIMSYSLDTG----------KHDH-SIPNIIAHNLSK---- 416 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTIND 196 +V+ + + R ++L + + +R L + + Sbjct: 417 --------------NVETFSAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFDMEQ 462 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD- 255 G +++ + +L + Q L+ DI L + L LF + Sbjct: 463 NGILLNIQKLQELSDKFEQLIAVLENDIHNLAGEKF-NIASPKQLSDVLFNKMELSKKKK 521 Query: 256 -------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRG 307 + L+++ ILN S + L + V DGR+ Sbjct: 522 SKSGSYSTNYEVLEALEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHT 578 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P + +R Sbjct: 579 SFS-TTVTATGRLSSSNPNLQNIP------------------------IRSEEGNFIRQA 613 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA G K++ AD + IE ++LA +A +AFAN +DI+ T + F Sbjct: 614 FIAPKGCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFGV-------- 665 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 + + + + Sbjct: 666 --------------------------------------QEIDEQLRRKAKTINFGIIYGI 687 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 A + + + + + + + Sbjct: 688 SPFGLAKRLGITFQEAAEYINYYFSCYPEIKVYMEKAVSIARNHGY-------------- 733 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + RR D+ YL R Q + Sbjct: 734 ------------VETLFGRRCFVRDINNKIPYLRQFA---ERAAINAPL------QGTAA 772 Query: 608 DILCEGMKNA-TKNGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLK 664 DI+ M + I+L VHDE++ E ++ + + +M +PL+ Sbjct: 773 DIIKRAMIRLFDQLKSGKIILQVHDELLVEVEESRVQETAKLMKDIMENAVE--ISIPLE 830 Query: 665 AEGYEAKRY 673 E + + Sbjct: 831 VEIKISDNW 839 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 93/668 (13%), Positives = 185/668 (27%), Gaps = 153/668 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A DD V D + L + + +N + K GI + Sbjct: 328 LMGVALACDD-SVYYVDVENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNA-GIHV 385 Query: 89 PSKRWICTSVLARTNGLPSS------LKNA-----CLALNFSEHLTKMEEGK---ALIAR 134 + ++ + L + + K Sbjct: 386 NNIAL-DLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQY 444 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 F + P T + D+ + E L + TI Sbjct: 445 FGEFVSHLPTIKET------LLKELKSKNIEDI------------FFNMEMPLEKVLFTI 486 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +D++ + L++++++E L +DI L + + L L+ G+ V Sbjct: 487 ERNGMPLDVEDLQNLEKILSEELAILADDIYALAGSPF-NIKSPKQLAEVLYNKLGLTPV 545 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 D + T +L + IL + + L + V R+ T G Sbjct: 546 DKARSTKAEVLEAMTGEHDVIEKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG 605 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASN 372 + TGR + QN+P +R Sbjct: 606 -TVTGRLACQDPNLQNIP------------------------IRSERGRLLRKAFCDTHQ 640 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 + AD + IE R LA ++ ++ AF + ED++ T ++ F+ P++KV+K+QR Sbjct: 641 NTYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQA 700 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Q Sbjct: 701 KTVNFGII--------------------------------------------YGQQAYGL 716 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + K+ + + + A+ ++ V + + Sbjct: 717 SKILKISVSEAQKLIDAYFDRYPDVARFINETVSQA------------------------ 752 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 ++ + R + N R + G +Q + +++ Sbjct: 753 --CENLRVKTLLGR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKL 800 Query: 613 GMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKA 665 M K ++L +HDE++ E P+ + TL +M +PL Sbjct: 801 AMLQLSDALEKRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM--ILSVPLVV 858 Query: 666 EGYEAKRY 673 K + Sbjct: 859 NILIGKNW 866 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 92/601 (15%), Positives = 169/601 (28%), Gaps = 142/601 (23%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205 + Q + ++ L L + + E + + + G +DL + Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262 + +LQ + + + G + L++ LF G+ ++ T Sbjct: 527 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585 Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L +L + + ++ L +AV++DGR+ T A TGR Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P AS +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP------------------------IRTDASRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL + + K+ Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A+ A+ GV + + E + Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR ++ R +Q + DI+ M K Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E V L M +PL+ + Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898 Query: 673 Y 673 + Sbjct: 899 W 899 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 97/694 (13%), Positives = 198/694 (28%), Gaps = 149/694 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57 L ID E S K + Y + A I + +D+ + + ++ Sbjct: 342 LIIDSE--SSLNEQKEYLANYKKIASIYYESLGIIISTEDKD-FYFPLNHGGLLAKNIDK 398 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---N 111 + ++ + +++N LGI ++ + + + Sbjct: 399 NLVVNFISQLDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPIIA 452 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 K GK D ++ + + Y + + + Sbjct: 453 ITEYSKLEPKDFKATFGK-------VNVELITTQDFSKYLSDISIGILAIYDELNYLLKK 505 Query: 172 E-LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E L+K L + E L + + +G ID+ + +E ++++ I + Sbjct: 506 EDLYKVL---MENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAGE 562 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSG 286 + L LF+ + ++ T +L L+L+ + Sbjct: 563 EF-NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNK 621 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++TL V + R+ + G + TGR S QN+P Sbjct: 622 LKTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSDPNLQNIP--------------- 665 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA GK L+ D + +E RVL ++ ++ I+A+ + Sbjct: 666 ---------VKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEK 716 Query: 407 DIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D++ T + FN + VS+EQR I Sbjct: 717 DLHDLTARRIFNLADSETVSREQRTIA--------------------------------- 743 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + A + K+ K + ++ V K++ Sbjct: 744 -----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVI 792 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E R+ S + T S Sbjct: 793 EFGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKS 823 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTP 640 Q R ++Q + ++L + M K ++L VHDE++ E + Sbjct: 824 QAERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEKSS 877 Query: 641 YFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 878 VEKYSEILADIMKNTVQL-EDVKLNININIGKNW 910 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 86/678 (12%), Positives = 185/678 (27%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCKEIFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ ++ ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K + + Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAIEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 86/678 (12%), Positives = 186/678 (27%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCREMFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ ++ ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLINPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K + + Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R+ K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 87/593 (14%), Positives = 155/593 (26%), Gaps = 127/593 (21%) Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 D+ + + ++ A S +FS EG Sbjct: 410 DLFAMNFFDVTLAAYVLDSSVS------RYDFSYLAETYLEG--------------ALAP 449 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDL 205 + Q D + + + D + L + + G +D D Sbjct: 450 VEDDDDRLVMQAACLRALIDPMSQALVADGTKGVYDTIDLPLVPVLAHMERIGALLDTDT 509 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLK 262 + L AQ + E I +L + + LF + G+ T Sbjct: 510 LQALGSRTAQNIADISERIYELAGEKF-NIDSPQQVSHILFDVIGLPPRKRTSRGYSTDA 568 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L + LIL + ++ L + +DGRL + + TGR S Sbjct: 569 KVLEDLSSEHQLPGLILEYRELAKIMGTYIDALPKLRGADGRLHTSFN-ETVTTTGRLSS 627 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R C I S V AD Sbjct: 628 SNPNLQNIP------------------------VRTEFGRHIRECFIPLSPEHLFVSADY 663 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA ++G+ I AF +G D + T A+ F P+++V+ E R+ K + + Y Sbjct: 664 SQIELRLLAHLSGDAHLIDAFRSGADFHSATAARVFGVPVEEVTPELRSRAKAVNFGIVY 723 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + L + F + ++ + Q E + G Sbjct: 724 GQ-----QAFGLSQSLRIPFGEAQAMIDRYFTAYPVVRAYLDNIVAQAHEKGYALTMFGR 778 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + A++ + M + Sbjct: 779 KRHI---------PELRAHNAQQRAFGERIAMNHPMQGTA--ADIIKKAMVEVDARLRHE 827 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 P+ + M Sbjct: 828 FPN----------------------------------------------AKMMIQV---- 837 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+ P V L +M +PL + AK + Sbjct: 838 -------HDELDLSVPADQVGEVSALLKEVMENVVE--LDVPLIVDVQSAKNW 881 >gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] Length = 975 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 78/648 (12%), Positives = 164/648 (25%), Gaps = 136/648 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKT--LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L D + H+ + + GI + R +L+ Sbjct: 431 LRDALEDAALPKDLHDLK---AVLRALEPHGITLAGVR-DDVMLLSYLVNPTHGSHTLPD 486 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDS-------PPYDCTRANHVQAWQLFGEYCKRDV 167 + + K +++ + + ++ + Sbjct: 487 VVARFTNRALTPVVKGVVSPTLLPESANAIHRVAPILRKQVEEAGLVVHEIPKDDPALGG 546 Query: 168 EATRELFKR-------------LIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 T E+ L+ + + + L + + + G RID ++ ++ + Sbjct: 547 AVTHEMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSSRL 606 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-DMSE----GTLKSILSHS 268 A E L E I + + L LF + + T + +L Sbjct: 607 AVEIDNLAEKIYADSGHRF-NINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEEL 665 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L++ L+ L +GR+ T G + TGR S Q Sbjct: 666 AENHPIAALVIEHRQLQKLKSTYLDQLPSLSDREGRIHTTFNQVG-TATGRLSSTNPNLQ 724 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R+ IA+ G L+ AD + IE R+ Sbjct: 725 NIP------------------------TRTAIGREIRAAFIAAPGNLLMSADYSQIELRL 760 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A + + + A+ G+DI+ T A+ F + + KE RA K + + Y Sbjct: 761 MAHFSQDPLLLNAYRTGQDIHTLTAAEVFGVDAETMDKETRARAKAVNFGIVYGISP--- 817 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 L + Q + ++ ++ + + G + Sbjct: 818 --FGLAAQLGIDQKVARTYIETYYDRYKGIKRFIDETLETVRLAGAVSTHFGRVRPI--- 872 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + ++ +L Sbjct: 873 ------PDIQSRNPNMRGFAERTAINTPLQGTAADLI---------------------KL 905 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNATKNGYDIVLT 627 + + L M Sbjct: 906 AMISLDREIRARG----------------------------LKSRMTLQVHD-------- 929 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 E++ + + + TL M + +P+ A+ +R Sbjct: 930 ---ELLFDVVPSEAEEMQTLVQHEMENVAEF--SIPIVADIGLGDNWR 972 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 99/650 (15%), Positives = 193/650 (29%), Gaps = 119/650 (18%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDI 88 + A ++ E + D L YL+DE ++N + + GIDI Sbjct: 329 VLGYAL-YNKEQAFYISFEDALN-DQDFLNYLKDEKYSKYSYNIK--AQILSARWNGIDI 384 Query: 89 PSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + +K+ C ++ + E L + + Sbjct: 385 KGMNF-DLQLASYILNPSLKDEMKSICDYYDYDSVQYEEEVFGKLAKKHIPEIDLLARHT 443 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 ++A + + +D E +L++ L E + + + G +ID+ ++ Sbjct: 444 VSKAKAIYDLKDEAIQRLKDEE-QFDLYQNL------ELPVTYILADMEYVGAKIDIHVL 496 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 +++ Q+ K+++EDI L D + L LF G+ ++ T + Sbjct: 497 KEMEMDFEQQIKQIEEDIYMLADKEF-NISSPKQLGEVLFERLGLPNGKKTKTGYSTSQD 555 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL LI + + + L E V +DG++ ++TGR S Sbjct: 556 ILEKIEGLHPIIPLIQKYRMLTKLSSTYVKGLQEQVFADGKIHTIYNQA-LTQTGRLSSI 614 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R I S+ LV D + Sbjct: 615 EPNLQNIP------------------------VRQEEGKLIRKAFIPSHDY-LVTFDYSQ 649 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA +AG I+AF +DI+ T A F ++V+ R K + + Y Sbjct: 650 IELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKAVNFGIIYGM 709 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G + + FE++ + + + + + ++ Sbjct: 710 G-----EFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYVSTVLNRKR 764 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + E I + +M+ ++ L Sbjct: 765 YI---------PTINDKNFMVREQARRFAMN-SPIQGSGADILKLAMMKVNQLMKDKHLK 814 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 S L D Y Sbjct: 815 SEMILQVHDELIFDVYK------------------------------------------- 831 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+ + + S M + +PLK +G A + Sbjct: 832 ------DEL--------DEMMKLIKSAMVEAFQ--MDVPLKVDGAYASNW 865 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 91/669 (13%), Positives = 191/669 (28%), Gaps = 159/669 (23%) Query: 32 LCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A + D V + ++ + L ++ E + +N + + I Sbjct: 339 GIALS-DGNRVVYVELKQRPEELLEILCKFFSREDLSFYGYNIKRDLHALRNA---GIVI 394 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNF---SEHLTKMEEGKALIARFCKGSIDSPPYDC 147 C L + + + Y Sbjct: 395 YNVSCDL-------------ALAEHLIHGGARTSFQSLLVSHG-------WAAVAARYVK 434 Query: 148 TRANHVQAWQLF----GEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQT 193 +H +Y V ++ + L+ E L + + Sbjct: 435 EWGHHALPLVQLPENPEKYFGELVALLPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFS 494 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G +D ++ L+ + Q+ L E+I L + + L L+ GI Sbjct: 495 MERNGMPLDSKKLVSLEHSLEQDLAILTEEIYTLAGEPF-NIKSPKQLANILYNKLGITP 553 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFY 312 +D ++ T +L + +L A + L V+ R+ T + Sbjct: 554 LDKAKSTRAEVLEALREEHKIIEKLLMFRALEKLLSTYVKALPRQVAPQTQRIHATFEQM 613 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IAS 371 G + TGR + QN+P+ +R + Sbjct: 614 G-TATGRLACRDPNLQNIPK------------------------RSSRGLSLREAFLVPC 648 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + AD + IE R+LA ++ ++ + AF GEDI+ T ++ F+ P+D+V+K+QR Sbjct: 649 ETVSFLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRM- 707 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 + + + + Q Sbjct: 708 -------------------------------------------YAKTVNFGIIYGQQAYG 724 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + K+ + + + +A+ ++ GV + ++ + ++ + RV + Sbjct: 725 LSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAASHDLKVTTMLGRERVID------ 778 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 I S R +Q + +++ Sbjct: 779 -NWDEHPGIRASSGR-----------------------------LAVNTRIQGSAAELIK 808 Query: 612 EGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 M K ++L +HDE++ E PD + L M + +PL Sbjct: 809 CAMLEISKEIQDRKLQSRMLLQIHDELIFEVPDGEMQEMCALVQEKMEAAMT--LTVPLV 866 Query: 665 AEGYEAKRY 673 K + Sbjct: 867 VNILIGKNW 875 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 95/644 (14%), Positives = 172/644 (26%), Gaps = 130/644 (20%) Query: 44 LWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D +E L L D V HN+ +F + G I T++ A Sbjct: 356 WFDPSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 413 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L L+ +G +A ++ + + Sbjct: 414 VKPGRRSFDLDALSLEYLHRELAPAAAPDG--QLAFGADDGAEAEALMVQARAILDLGEA 471 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F A L D E L + G D + + ++++ A + Sbjct: 472 FEGRLAEVGAADL--------LRDMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQ 523 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271 + ++ + L+ LF + L + + ++ Sbjct: 524 QAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTD-- 580 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 581 NELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP 638 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390 +R + G + L+ AD + IE RV+A Sbjct: 639 ------------------------VRTDEGRAIRRGFVVGEGFESLLTADYSQIELRVMA 674 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ + +AF +GED++ T A+ F+ V E R K M L Y Sbjct: 675 HLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYG-----LSA 729 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L+++ + FE + + + D+ L G Sbjct: 730 FGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGR--------- 780 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + E + +L R L Sbjct: 781 RRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI------------AMLNVDRALRE 828 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 +D++ M L VHD Sbjct: 829 ADLRSR-------------------------------------ML----------LQVHD 841 Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 EIV E +V L M+ +PL + Sbjct: 842 EIVLELAPGERAAVEELVRREMSTAVE--LRVPLGVSVGAGPDW 883 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 107/680 (15%), Positives = 193/680 (28%), Gaps = 149/680 (21%) Query: 31 TLCAYAWDDEPVKLWDR---TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---- 83 A + T A+ + + L + + H+ Sbjct: 365 VGVAL-VGEHAGLHVSLDGDTPDPALVAAVRDALGEGGLAKAVHDLKRTLKALTAPTEGD 423 Query: 84 -LGIDIPSKRWICTSVLARTNGLP----SSLKNACLALNFSEH--LTKMEEGKALIARFC 136 LG D + +L+ P +SL+ A + + + +A Sbjct: 424 GLGPDAALDGVVDDVLLSAYLIQPDRRDTSLEALAEAHLHTPLTAPREPAQQRAQGTFDL 483 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIN 195 G + A+ V+A + + + +RL L + E L L + Sbjct: 484 DGGQAAAERAARAADAVRAAWVVRRLSTQFTPQVLDRGAQRL--LQELEIPLSRLLARME 541 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI----IRSSRQTYALRMYLFLITGI 251 G +D+D + L+E E + L+ LF + Sbjct: 542 LTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNM 601 Query: 252 DLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 ++ +L+ +L + L ++L+ +R A+ + L E V+ DGR Sbjct: 602 PRTRKTKTGYSTDVDSLQDLLEQTQHPFL-ENLMAHRDATKLRQT--VEGLLETVAPDGR 658 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T A TGR S QN+P A + Sbjct: 659 IHTTYSQTAA-ATGRLSSLHPNLQNIP------------------------VRTEAGRRI 693 Query: 365 RSCIIASN----GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 R +A L+ AD + IE R++A ++ ++ I+AF GED++ ++ F Sbjct: 694 RGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVD 753 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 D+V+ EQRA K M L Y + L Sbjct: 754 PDEVTAEQRAKVKAMSYGLAYG-----LSSFGLSKQL----------------------- 785 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 K+ + K + + GV +D+ Sbjct: 786 ----------------KISVDEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIE-- 827 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RR D+ D L + Sbjct: 828 ------------------------GRRRYLPDLSSDNRQLRDMAERA---------ALNA 854 Query: 601 IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTK 653 +Q + DI+ M + ++L VHDE++ E P L M + Sbjct: 855 PIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKERMGR 914 Query: 654 NPSWAKGLPLKAEGYEAKRY 673 +PL + + + Sbjct: 915 AAE--LSVPLDVHVGQGRSW 932 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 77/501 (15%), Positives = 143/501 (28%), Gaps = 110/501 (21%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D + L + + G RID+D + ++ +A+E + + +L + Sbjct: 504 YYDIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEF-NLDSPK 562 Query: 240 ALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF G+ + T LS IL + + L Sbjct: 563 QLSVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYRELAKMESTYIEALP 622 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DG + + TGR S QN+P Sbjct: 623 RMRAGDGLVHTHFNQTV-TTTGRLSSSDPNLQNIP------------------------V 657 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R C + G + AD + IE R+LA ++ ++ + AF +G D + +T A+ Sbjct: 658 RTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAAR 717 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F P+++V+ R+ K + + Y + L + FE + Sbjct: 718 VFGVPLEEVTPSMRSRAKAVNFGIVYGQ-----QAFGLAQNLGIGFKEAQEMIDRYFEAY 772 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + ++ + G R + Sbjct: 773 PGVRAFLDGTVEEVRACGYATTMFGR---------RRHIPELKAKNPAQRGF-------- 815 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 G+ + +N Sbjct: 816 ---------------------------------------GERTAMNHPMQG---SAADIV 833 Query: 596 KLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 K+ N VQ + G +++ VHDE+ P + +VG L MT Sbjct: 834 KMAMNEVQ-----------RRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVRDAMT 882 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + +PL + AK + Sbjct: 883 NVVT--LEVPLIVDVQSAKTW 901 >gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic] gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic] Length = 875 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 92/631 (14%), Positives = 168/631 (26%), Gaps = 148/631 (23%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L D+++ + ++ L K ++ S KN Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---- 429 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 K + I S T + T L+ Sbjct: 430 ------FKEVLKETWIENIIIESAKIVINFITLYKQTI--------WELKDNKTFRLYSN 475 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + + + + G +D + + +L E KL+E+I L+ + Sbjct: 476 I------DLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIG 528 Query: 237 QTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAIL 290 L LF + S T IL + DL+L + Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++L + + + T ++ TGR S QN+P Sbjct: 589 YTDSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQNVP------------------- 629 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ Sbjct: 630 -----IRSSEGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHT 684 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + FN +++ E R K + G+ Sbjct: 685 QTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 718 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A + + K + A+++GV + + + Sbjct: 719 ------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASS 760 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 R+ + R Sbjct: 761 NGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAERA 789 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M N K +VL +HDE++ E P + Sbjct: 790 AINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEII 843 Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + +M S +P+ E + Sbjct: 844 TPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1] gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 516 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 119/461 (25%), Positives = 190/461 (41%), Gaps = 82/461 (17%) Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + + + A+ + R ++ ++ KL + + DGR RG Sbjct: 102 LPAAHTKAAVRQMLAGDIEG--AARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHL 159 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IADPLGLASDCVRS 366 YGA TGRW+G + Q QNLPR + L + + PL + S +R Sbjct: 160 VYGAG-TGRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRG 218 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA---------- 416 C+I + G + +D + IE R+ AW+A E+WKI+AF + + Sbjct: 219 CLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLK 278 Query: 417 --FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + P+++ S+E+ GKV ELALG+ GG F++MA+ G Sbjct: 279 VPYAHPLNENSQERTPYGKVPELALGFGGGVGAFQSMAAIYG------------------ 320 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 K+ + +K AWR H V+ LW+++ + + Sbjct: 321 ---------------------MKVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISN 359 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS---------------- 578 G + + R+ + +VLPS R L Y+ + + Sbjct: 360 PGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDT 416 Query: 579 ----YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +N+ T + R TYGG L EN +QAI+RD+L + GY +V+ VHDE ++ Sbjct: 417 ITFMSVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALA 476 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E SV S+M P+WA GLP+ A G+ RYRK Sbjct: 477 EIRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516 >gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ] Length = 883 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 89/664 (13%), Positives = 173/664 (26%), Gaps = 145/664 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGID 87 I + + + + + +L + V + + L + Sbjct: 342 DIHSLSISKNKNEAFYIKEEQAKPLLEKILT----TDTLKV---ATADYKSLLYYSLRNE 394 Query: 88 IPSKR-WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 I V A+ P ++ + K L + P Sbjct: 395 IEISAEVFDV-VQAQFVANPG-----------EKNTIESLSEKFLGSSIPAFEKKKPLPS 442 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----LSDGERDLWLLDQTINDRGYRID 202 + VQ + V D + L + + G I+ Sbjct: 443 ENEEDLVQEISTARAHSCFRVSEFLLEELERKELLNVFHDIDNKLTPVLAAMEYEGVHIN 502 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + ++ + + +L + K + + + + + LF + + ++ Sbjct: 503 KAFFSEYEKELQTKLDELQASVDKFSKEPV-NLNSPKQVGVLLFEELELPVGKKTKTGYS 561 Query: 260 TLKSILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 T S+L LIL + + E ++ G++ A Sbjct: 562 TDSSVLEDLAAKGLSEVPALILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVA-A 620 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P VR IA GK L Sbjct: 621 TGRLSSNHPNLQNIP------------------------IRSELGRRVRKGFIAGPGKIL 656 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + +E R+LA + + I AF G DI+ T ++ P+++V R+ K + Sbjct: 657 LAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTASEIMGVPVEEVGSNDRSKAKAVN 716 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G + +K Sbjct: 717 FG--------------LMYGQSSFGLAAALK----------------------------- 733 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + + V L E Sbjct: 734 -IPRKEAKEYITNYFERFSSVKGYLDHLKEECEKTGYAITLK------------------ 774 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 R+ +D+ T + R + +Q + DI+ M N Sbjct: 775 --------GRKRYLADIHSTN---RTIKANAERVAI------NSPIQGTAADIIKLAMIN 817 Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYE 669 K ++L VHDE++ E ++ + T+ M K S +PL + Sbjct: 818 IQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILKDGMEKVVS--LSVPLDVDMGV 875 Query: 670 AKRY 673 + Sbjct: 876 GVNW 879 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 86/678 (12%), Positives = 186/678 (27%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ ++ ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K + + Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R+ K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/527 (16%), Positives = 141/527 (26%), Gaps = 127/527 (24%) Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E+ L + + RG R+D + + L A Sbjct: 503 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQ 272 L+ +I + S R L L+ G+ ++ T + L Sbjct: 563 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 621 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L L+ L V+ GRL T A TGR S QN+P Sbjct: 622 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQT-AVATGRLSSLNPNLQNIP 680 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G L+ AD + IE R+LA Sbjct: 681 ------------------------IRSEMGREIRKGFIADKGYCLISADYSQIELRLLAH 716 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA + +AF G DI+ T A+ V+ QR K + Sbjct: 717 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVN--------------F 762 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ + + + + + Sbjct: 763 GVLYGMS------------------------------AHRLSNELGISYVEAAGFIETYF 792 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ E RR Sbjct: 793 NTYPGIRGYIDRTLEFGRTQGYVETMY--------------------------GRRRYVP 826 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627 + + N + Y +Q + DI+ M + G ++L Sbjct: 827 ----ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRELEALGGRLLLQ 877 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ V L +M +PL E + Sbjct: 878 VHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 922 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/527 (16%), Positives = 141/527 (26%), Gaps = 127/527 (24%) Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E+ L + + RG R+D + + L A Sbjct: 500 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 559 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQ 272 L+ +I + S R L L+ G+ ++ T + L Sbjct: 560 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 618 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+L L+ L V+ GRL T A TGR S QN+P Sbjct: 619 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQT-AVATGRLSSLNPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +R IA G L+ AD + IE R+LA Sbjct: 678 ------------------------IRSEMGREIRKGFIADKGYCLISADYSQIELRLLAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA + +AF G DI+ T A+ V+ QR K + Sbjct: 714 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVN--------------F 759 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G+ + + + + + Sbjct: 760 GVLYGMS------------------------------AHRLSNELGISYVEAAGFIETYF 789 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + G+ E RR Sbjct: 790 NTYPGIRGYIDRTLEFGRTQGYVETMY--------------------------GRRRYVP 823 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLT 627 + + N + Y +Q + DI+ M + G ++L Sbjct: 824 ----ELAATNRNVREAGERLAY-----NMPIQGTAADIIKHAMIRLDRELEALGGRLLLQ 874 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ V L +M +PL E + Sbjct: 875 VHDELLIEAPENRAEDVARLTREVMEGAAK--LSVPLAVEVGTGPNW 919 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 358 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 417 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 418 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 475 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 476 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 524 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 525 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 583 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 584 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 640 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 641 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 675 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 676 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 735 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 736 SKIKAMNYG--------------LAYGLS------------------------------A 751 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 752 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 800 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 801 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 836 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 837 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 894 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 895 LTVSIGVGRSW 905 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 363 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 422 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 423 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 480 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 481 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 529 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 530 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 588 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 589 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 645 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 646 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 680 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 681 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 740 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 741 SKIKAMNYG--------------LAYGLS------------------------------A 756 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 757 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 805 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 806 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 841 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 842 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 899 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 900 LTVSIGVGRSW 910 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 93/601 (15%), Positives = 169/601 (28%), Gaps = 142/601 (23%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + Sbjct: 419 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 466 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205 + Q + ++ L L + + E + + + G +DL + Sbjct: 467 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 526 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262 + +LQ + + D G + L++ LF G+ ++ T Sbjct: 527 LTELQSQFGDQIRDA-ADAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 585 Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L +L + + ++ L +AV++DGR+ T A TGR Sbjct: 586 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P AS +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP------------------------IRTDASRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYG- 738 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 GL + + K+ Sbjct: 739 -------------LAYGLS------------------------------AYGLSQQLKIS 755 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A+ A+ GV + + E + Sbjct: 756 TEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL--------------------- 794 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 RR ++ R +Q + DI+ M K Sbjct: 795 -----GRRRYLPELDSSN---RQVREAAERAA------LNAPIQGSAADIIKVAMIQVDK 840 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 ++L VHDE++ E V L M +PL+ + Sbjct: 841 ALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYP--LDVPLEVSVGYGRS 898 Query: 673 Y 673 + Sbjct: 899 W 899 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 86/599 (14%), Positives = 156/599 (26%), Gaps = 129/599 (21%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLK----NACLALNFSEHLTKMEEGKALIARFCKGSID 141 +D R T V A S + + D Sbjct: 448 LDADPARLFDTVVAAYLLDSVRS-DFADAHLAETYLHAALP-------------AAAGED 493 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P D A AW + + + + E L + ++ G + Sbjct: 494 GAPADAPSAAARSAWLARILREPLAAALEAQGAEDIF--TKIEMPLVRVLASMERAGMYV 551 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMS- 257 D + E ++ + +L + I +L G + L LF G+ Sbjct: 552 DPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQR 611 Query: 258 --EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L LIL + L+TL +DGR+ T + Sbjct: 612 GYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTYLDTLGALRETDGRVHTTYNQT-IT 670 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P V+ G Sbjct: 671 ATGRLSSSNPNLQNIP------------------------TRSELGHAVKKAFSVEEGSV 706 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 V D + IE R+LA ++G++ + AF GED + T A+ F P+++V+ + R+ K + Sbjct: 707 FVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAETAARVFGVPVEEVTPQLRSRAKAV 766 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y + LD+ + F + ++ + Sbjct: 767 NFGIVYGQ-----QAYGLSQALDIPMAEAREMIDAYFRAYPGVRTYLDETVAFAKQTGYA 821 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + G + + + G + SA + + Sbjct: 822 ETMYGRRRPIPEL----RVPAQRMF------GERTAMNHPMQGSAADIIKI--------- 862 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R RT + ++ Sbjct: 863 --------------------------AMVRVAERLRTE----------GFAAKMI----L 882 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 DE+ E P + V + M +PL A+ + + Sbjct: 883 QVH-----------DELDFECPVGEVDALVAMVREEMEGVAQ--LRVPLIADASVGETW 928 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 92/639 (14%), Positives = 173/639 (27%), Gaps = 151/639 (23%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 + L D+++ + ++ L K ++ S Sbjct: 369 NNDWFSDIIFNLLADKSIKKITYSLK---PLLKFYANQSHKITAIEDLELMQYALSAGLS 425 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 KN E I K + ++ + F Y D Sbjct: 426 QKNLFEE-ALKEDNI--------INESAKIVANFISLYKQTILALKDNKAFRLYSDID-- 474 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + + + G ++D + + +L E L+E+I L+ Sbjct: 475 ----------------LPICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALS 518 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNIT-QLAKDLILNRL 282 + L LF + + T IL + DL+L Sbjct: 519 GTKF-NIGSPKQLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWR 577 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + ++L + + + R T ++ TGR S QN+P Sbjct: 578 QLTKFKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIP----------- 626 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + +R IA G KL+ AD + IE R+L+ IA D +AF Sbjct: 627 -------------IRSREGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAF 673 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 N +DI+ T + FN +++ E R K + G+ Sbjct: 674 INKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---- 715 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A + + + K + A+++GV + + Sbjct: 716 --------------------------AFGLAKQLNVSNSEASEYIKKYFAEYKGVQEYME 749 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + +++ R+ + Sbjct: 750 QTKAFA--------------------------SSNGYVINFFGRKCFIPLIHDKK----- 778 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSET 636 R +Q + DI+ M N K +VL +HDE++ E Sbjct: 779 LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEV 832 Query: 637 PDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 P+ V + +M S +P+ E + Sbjct: 833 PEDEVELVTPIIKKIMEN--STNMDVPIITEIRAGNNWM 869 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 247 bits (631), Expect = 5e-63, Method: Composition-based stats. Identities = 100/636 (15%), Positives = 175/636 (27%), Gaps = 155/636 (24%) Query: 57 LLQYLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPSSLK 110 L +L+ + VA + + L + R + A S Sbjct: 419 LCAWLQSARRLVVA-----DLKALLTAAPCWRNLPLGETPPRCFDLGLAAYLLNPEES-- 471 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + P A A E + + Sbjct: 472 ----DYGWP-------------RLAARWGAALKPEGGGPARLALAMAEALE-DRLVRDGL 513 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 REL+ L E L + + RG ID + E +L ++ G Sbjct: 514 RELYNTL------ELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYAAA-G 566 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286 + R L LF + ++ T + L D IL Sbjct: 567 TTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKLAGRHAVVDSILQFRKLEK 626 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L+ L V GR+ T A+ TGR S QN+P Sbjct: 627 MRSTYLDPLPRLVDGQGRIHTTFNQ-KATATGRLSSSNPNLQNIP--------------- 670 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 G +R+C IA G+ LV AD + +E RVLA ++ + + AF GE Sbjct: 671 ---------VRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGE 721 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T A ++ +VS +QR K + G+ Sbjct: 722 DIHARTAALIYDLQAGEVSPDQRRNAKTINFG--------------LIYGMG-------- 759 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + K+ + + + G+ ++++ Sbjct: 760 ----------------------AQKLGQELKISTAEAKEFITRYFERLTGLKAFYENVEA 797 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR + D+ A + Sbjct: 798 TAKRQGYVTTLG--------------------------GRRRLLPDILSAN---GQAFAL 828 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDT- 639 R+ ++Q + DI+ M + ++L VHDE++ ETP+ Sbjct: 829 ARRQAI------NTVIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEAT 882 Query: 640 PYFSVGTLCSLMTKNPSW--AKGLPLKAEGYEAKRY 673 + + +LM+ +PL + + Sbjct: 883 AEAAGARVAALMSSVAPGGETLSVPLVVDWGVGHDW 918 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 99/697 (14%), Positives = 191/697 (27%), Gaps = 175/697 (25%) Query: 18 KVGVWAYAEQAVITLC------AYAWDD--------EPVKLWDR-------------TEQ 50 K+ + +A++A I Y D+ + T Sbjct: 311 KIELENFAKEAEIVGIFGIYLLQYKGDNLALILSLQNKSYIIKISNTTNDLFSYNTKTNN 370 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 S + L D+++ + ++ L K Sbjct: 371 SWFSDIISNLLTDKSIKKITYSLK---PLLKFYANQSHAITAIED--------------- 412 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + G + F + ++ + + Y ++ +E Sbjct: 413 -------LELIQYALSAGLSQKNLFEEAQKETVIENIINESAKIVINFISLYKQKILELK 465 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 RL D + + + G ++D + + +L E +L+E+I L+ Sbjct: 466 DNKAFRLYSNID--LPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGT 523 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDLILNRLAS 284 + L LF + S T ++ + S DL+L Sbjct: 524 KF-NIGAPKQLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQL 582 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++L + + + R T ++ TGR S QN+P Sbjct: 583 TKLKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVP------------- 629 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +R I G KL+ AD + IE R+L+ IA D +AF N Sbjct: 630 -----------IRSSEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTN 678 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 +DI+ T + FN P DK++ + R K + G+ Sbjct: 679 KDDIHTQTACQIFNLPKDKLTSKHRRKAKAIN--------------FGIIYGIS------ 718 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A + + + K + A+++GV + + Sbjct: 719 ------------------------AFGLAQQLNVTNSEAAEYIKKYFAEYKGVQEYIEQT 754 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + ++ R+ + Sbjct: 755 KAFV--------------------------SSNGYVTNFFGRKCFLPSIHNKK-----LK 783 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPD 638 R +Q + DI+ M N K +VL +HDE++ E P Sbjct: 784 QFAERAAINAP------IQGTNADIIKIAMINLDQEIEKLKLKTRLVLQIHDELLFEAPT 837 Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 V + +M S +P+ E + Sbjct: 838 DEIELVIPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 90/559 (16%), Positives = 146/559 (26%), Gaps = 123/559 (22%) Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----LSDGER 185 L A + + P R + REL L + E+ Sbjct: 501 LYAYLLDPANTNMPVVAKRYLDREWPADAPTRAAITGHLLRELPPLLDDARRKMYDEMEK 560 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + RG ++D D + L L+ I + R L L Sbjct: 561 PLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEFH-IRSPKQLETVL 619 Query: 246 FLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 + + ++ T S L L+L L+ + V+ Sbjct: 620 YDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPNLVN 679 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GRL T A TGR S QN+P Sbjct: 680 PHTGRLHTTFAQT-AVATGRLSSLNPNLQNIP------------------------IRSE 714 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 715 LGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGL 774 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V QR K + G+ + S + Sbjct: 775 DEATVDANQRRAAKTVN--------------FGVLYGMSAHRLSND-------------- 806 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + A + G+ + Sbjct: 807 ----------------LGIPYAEAATFIEIYFATYPGIRRY------------------- 831 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + + ++ RR + A +L Sbjct: 832 -------INHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERL---------AYN 875 Query: 600 NIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 +Q + DI+ M G ++L VHDE++ E P V L +M Sbjct: 876 MPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV 935 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL E + Sbjct: 936 VQ--LKVPLAVEVGTGPNW 952 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 88/678 (12%), Positives = 189/678 (27%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCKEIFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ + ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIEF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E N + E ++ + L+ Sbjct: 440 NREDEF-----------------LRIKEVNIMPNLYKVLEEKIKEQDMEELLY------- 475 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 476 KVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAIEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46] Length = 330 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 152/335 (45%), Gaps = 20/335 (5%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SDLL 58 IDIE S + K G + Y AE I + AY+ D PV D T+ P Sbjct: 3 IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + + + + WQ F +YC RDVE + Sbjct: 123 --QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMAIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q + +L + + + Sbjct: 181 NKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQ--ITDL 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYLKEATGK--AKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 N + + + SD R+RG QFYGA TGRW+G Q Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQL 330 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 91/664 (13%), Positives = 175/664 (26%), Gaps = 149/664 (22%) Query: 15 PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74 L A A ++ V+ D E + Sbjct: 318 DLFSTPEVAVIHDFERV---IAINEGYVE-VDFKEIEEFL---------PEKGKI---YT 361 Query: 75 FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134 F+ +G + + +I SV L K K ++ + Sbjct: 362 FDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP----------------LQKDYSSKDILKK 405 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D ++ E K +E E E L + + Sbjct: 406 RLGVVSLEEVKDYVHYTLDIGKEILNELKKEGLENLYE---------SIEHPLTFVLYKM 456 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 RG D + + + + ++ K++++ I ++ + L LF + + Sbjct: 457 EKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKF-NLNSPKQLSKILFEKLKLKPL 515 Query: 255 ----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++++ + + +L+L + + + + + DGR+R T Sbjct: 516 KKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKHMDEDGRVRTTFI 575 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 G + TGR S QNLP S +R + A Sbjct: 576 QTG-TATGRLSSAEPNLQNLP------------------------VSDEISKKIRYAVTA 610 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G LV AD + IE R+LA ++ ++ ++A+ G DI+ T + F ++V + R Sbjct: 611 PAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLRR 670 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 I K + + Y L + FE + + + + + Sbjct: 671 IAKTVNFGIIYGMSPHGLSE-----RLGISVEEAEKYIDRYFEKFPKVKEYIENTLREAY 725 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 E + G L + K++ Sbjct: 726 EKGYVKTIFGRKRPL---------PELKSSNKNIRSFGERAAVNATIQGTAADI------ 770 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 +L + L Sbjct: 771 ---------------MKLAMVKLYKKLEKLGAY--------------------------- 788 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 M L VHDEIV E + + + M + +PL + Sbjct: 789 ---MV----------LQVHDEIVIEALEEKTEEIMKIVKETMENVVEF--SVPLTVDVKV 833 Query: 670 AKRY 673 K + Sbjct: 834 GKHW 837 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 86/649 (13%), Positives = 178/649 (27%), Gaps = 149/649 (22%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91 A+ + T +L L+D + + + K + G ++ Sbjct: 359 LAFAGKHYVFCPETAGK---EAVLSLLQDPAISK----AAADPKELYKYMMGQGKNLQGI 411 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 ++ +S + + T A Sbjct: 412 T-DDPALAGYLYEPGAS------GYGIQALGEEFL-----------PAASGEGAQDTAAL 453 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + E L++ D E L + G +D ++ ++ Sbjct: 454 VPVLREKLEERGLT------RLYE------DIELPLTENLAEMEFTGIAVDQAMLDEVTG 501 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268 + ++ + L++ G + L + LF G+ ++ ++ T S+L Sbjct: 502 EMTKKVQALEQQAWDQA-GEQFNLNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEAL 560 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + +++ S L L ++ GR+ A+ TGR S Sbjct: 561 QGEHPLIETLISYRQLSKLLSTYLLGLHPLINPATGRIHTHFNQ-MATVTGRLSSTEPNL 619 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386 QN+P +R + G L+ D + +E Sbjct: 620 QNIP------------------------TRTEVGKRMREMFVPGEGYDLLMSCDYSQVEL 655 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RV+A IA ++ + +F +G+D++ T ++ F P+D+V+ R+ K + + Y Sbjct: 656 RVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYG---- 711 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L + + S F + +++ + + E + L G Sbjct: 712 -ISDFGLARQLGVPRGEAAQYIESYFARYTGVKAYMEREKQKAREMGYVETLFGR----- 765 Query: 507 KKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 R + + + +A + V L + Sbjct: 766 ----RRYLPDINAKNFNRRSFAERTAINTPIQGTAADIIKVAMLKVA------------- 808 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 R L + VK + +V Sbjct: 809 RNLKEARVKSRV------------------------------------LLQVHDE---LV 829 Query: 626 LTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L E P +VG + M A +PL A+ K + Sbjct: 830 L--------EIPAAEQETVGKIVKETMEHAVDLA--VPLVADVAVGKNW 868 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 98/641 (15%), Positives = 177/641 (27%), Gaps = 133/641 (20%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 + + L +L DET V H+S + F G + T + A Sbjct: 370 DESDEAALAGWLADETRPKVLHDSKPAVLAFAAH-GWTLAGIA-RDTQIAAYLARPDQRS 427 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + L E + G + + + A D Sbjct: 428 YDLTDLALRYLHRELRV-DVPDDGQLTLDGLGGD----GEAEQNLMLHARATLDLADAID 482 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E +R+ + ++ E L + + G D D + +L+ A E K + Sbjct: 483 AELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAYA 542 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L+ LF + T L L Sbjct: 543 VIGREF-NLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHLLRH 601 Query: 284 ---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + ++ L ++VS DGR+ T A TGR S QN+P Sbjct: 602 RDVARLKST--VDGLLKSVSDDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP--------- 649 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399 +R + G L+ AD + IE R++A ++G++ I Sbjct: 650 ---------------IRTEEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALI 694 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF +G D + T + F + +V+ +QR K M GL Sbjct: 695 EAFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNY--------------GLAYGLS- 739 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + + + A GV Sbjct: 740 -----------------------------AFGLSQQLGITAEEARGLMEVYFAGFGGVRD 770 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 +++ + RR D+ D Sbjct: 771 YLQEVVARARQDGYTSTIL--------------------------GRRRYLPDLVSDNRQ 804 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDEIV 633 ++ +Q + DI+ M + G ++L VHDE+V Sbjct: 805 RREMAERM---------ALNAPIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELV 855 Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E ++ L M +PL+ E + + Sbjct: 856 FEVAPGERATLEELVRREMGGAYP--LSVPLEVSVGEGRDW 894 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 86/678 (12%), Positives = 186/678 (27%), Gaps = 149/678 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCKEIFESK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ ++ ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K + + Sbjct: 440 NREDEILKIKEVNMMPKLYKVLEEKIKEQDMEELLYKV---------------------- 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRGNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 + + + ++ E + ++ R + V K + + Sbjct: 745 VKLYLENIVEEAVEKGYVNTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + + + + R+L + K Sbjct: 796 QGSAADIIKLAMVNVH-------------RKLKEDNFKSS-------------------- 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 I+ ++ + L M + Sbjct: 823 ------------II----LQVHDE-----------LILNVYKDELEKIKALVKKEMEQVL 855 Query: 656 SWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 856 ELKVG--LDVDINIGNNW 871 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 207/716 (28%), Gaps = 156/716 (21%) Query: 4 LFIDIETRSPQPLPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTEQ--------SAMP 54 + D ET K A A +A IT +++ + + A+ Sbjct: 23 VAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALW 82 Query: 55 SDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L + V+C+AHN FE + K GI + + T A+ ++K+ Sbjct: 83 AFLKESIFESHDVICIAHNLSFEAMFLYKQ-GIVVQ-EPCYDTIAAAQL-----TMKSKW 135 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + K+ +L + Q ++ Y D + T L Sbjct: 136 EFRGLHDSGLKLLA-TSLFGADMPSFSSVTDGRHFDEMNPQEYETVR-YACADSDYTLCL 193 Query: 174 FKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + + D E ++ + G +D +L+ Q + L Sbjct: 194 YYKFNNWFDRFLPAHRIITEQLESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALK 253 Query: 222 EDIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVDMSEGTLK-------SILSHSNITQL 273 +I +LT G+ + T A + YL+ G+ ++ +E + +L Sbjct: 254 AEINELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQHR 313 Query: 274 AKDLIL-----NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + L ++ + V+S GR+ L G + TGRW+ Sbjct: 314 PELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLG-TDTGRWAARNPNM 372 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN PR+ +R+ I+A G+ ++ D + IE R Sbjct: 373 QNAPRKTNDPIG------------------------IRNFIVAPPGQIIMSLDFSQIELR 408 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRAIGKVMELALG 440 V A+ + ++ + +G DI+ T + F P + KE R I K + Sbjct: 409 VGAFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVF 468 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + + + F Sbjct: 469 YGLFPRGLQ--------------------------------------KTLRFKAGLDTSF 490 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 C+ + ++ + G+ ++ A Sbjct: 491 ERCKEIIDNLKSGYSGLTTWQEETKARAAKTCY--------------------------A 524 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--- 617 RR + +S + VQ + DIL Sbjct: 525 ETWMGRRRYLPHM---------LSSDWGKHSFAERCALNTPVQGTAADILKAACARIVAG 575 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670 + +L +HDE+V P+ + M + P +P+ AE Sbjct: 576 FPERPWLKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPIVAEASAG 631 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 104/660 (15%), Positives = 189/660 (28%), Gaps = 145/660 (21%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART 102 A+ + + + L + + H+ LG D + +L+ Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443 Query: 103 NGLP----SSLKNACLALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 P +SL+ A + + + +A G + A+ V+A Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503 Query: 157 QLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 + + + +RL L + E L L + G +D+D + L+E Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRL--LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTA 561 Query: 216 ERKKLDEDIVKLTDGI----IRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSI 264 E + L+ LF + ++ +L+ + Sbjct: 562 AADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDL 621 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + L ++L+ +R A+ + L E V+ D R+ T A TGR S Sbjct: 622 LEQTRHPFL-ENLMAHRDATKLRQT--VEGLLETVAPDDRIHTTYSQTAA-ATGRLSSLH 677 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN----GKKLVVAD 380 QN+P A +R +A L+ AD Sbjct: 678 PNLQNIP------------------------VRTEAGRRIREVFVADEVAGEQAVLLSAD 713 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ ++ I+AF GED++ ++ F D+V+ EQRA K M L Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + L K+ Sbjct: 774 YG-----LSSFGLSKQL---------------------------------------KISV 789 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + K + + GV +D+ Sbjct: 790 DEARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIE---------------------- 827 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK- 619 RR D+ D L + +Q + DI+ M + Sbjct: 828 ----GRRRYLPDLSSDNRQLRDMAERA---------ALNAPIQGSAADIIKRAMLDVQAG 874 Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P L M + +PL + + Sbjct: 875 LEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAAE--LSVPLDVHVGRGRSW 932 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 99/691 (14%), Positives = 201/691 (29%), Gaps = 147/691 (21%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSD----- 56 ID ET K + Y + A I + +++ + + + Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDLYF-PLNHGGLLSKNIDKNT 402 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113 L++++ + V +++N L LG ++ + + + Sbjct: 403 LIKFISELDVKFISYNFK---TLL--NLGFTFK-SMYMDMMIAYHLISSQTKMDVIIPIT 456 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 N K GKA I G + ++ E + EL Sbjct: 457 EYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKI----GLGILAIYDEINHILHK--EEL 510 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L E L + + +G +ID+ + +E K+++ I + Sbjct: 511 YDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAGEEF- 566 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGSAI 289 + L LF+ + ++ T +L L+L+ + Sbjct: 567 NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 626 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++TL V S+ R+ + G + TGR S QN+P Sbjct: 627 TYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIP------------------ 667 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D++ Sbjct: 668 ------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLH 721 Query: 410 VTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 T + FN D V++EQR I Sbjct: 722 DLTARRIFNLSDSDDVTREQRTIA------------------------------------ 745 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + A + K+ K + ++ V K++ E Sbjct: 746 --------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFG 797 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 R+ S + T +Q Sbjct: 798 EEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKAQAE 828 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFS 643 R ++Q + ++L + M K+ ++L VHDE++ E ++ Sbjct: 829 RMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEESSVEK 882 Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 883 YSEILADIMKNTVKL-EDVNLNININIGKNW 912 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 99/691 (14%), Positives = 201/691 (29%), Gaps = 147/691 (21%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSD----- 56 ID ET K + Y + A I + +++ + + + Sbjct: 346 IDNET--LLNEQKEYLNNYKKIASIYYEELGIILSTEEKDLYF-PLNHGGLLSKNIDKNT 402 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---AC 113 L++++ + V +++N L LG ++ + + + Sbjct: 403 LIKFIAELDVKFISYNFK---TLL--NLGFTFK-SMYMDMMIAYHLISSQTKMDVFIPIT 456 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 N K GKA I G + ++ E + EL Sbjct: 457 EYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKI----GLGILAIYDEINHILHK--EEL 510 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L E L + + +G +ID+ + +E K+++ I + Sbjct: 511 YDIL---IQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAGEEF- 566 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGSAI 289 + L LF+ + ++ T +L L+L+ + Sbjct: 567 NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 626 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++TL V S+ R+ + G + TGR S QN+P Sbjct: 627 TYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIP------------------ 667 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D++ Sbjct: 668 ------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLH 721 Query: 410 VTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 T + FN D V++EQR I Sbjct: 722 DLTARRIFNLSDSDDVTREQRTIA------------------------------------ 745 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + A + K+ K + ++ V K++ E Sbjct: 746 --------KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFG 797 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 R+ S + T +Q Sbjct: 798 EEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKAQAE 828 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFS 643 R ++Q + ++L + M K+ ++L VHDE++ E ++ Sbjct: 829 RMA------VNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEESSVEK 882 Query: 644 VGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 883 YSEILADIMKNTVKL-EDVNLNININIGKNW 912 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 83/511 (16%), Positives = 147/511 (28%), Gaps = 120/511 (23%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E+ L + Q IN G +D + L + E L+ I + Sbjct: 390 YVKIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAGREF-NINSPK 448 Query: 240 ALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + LF G+ + + T +S L IL ++ Sbjct: 449 QMGEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYRELQKLVSTYID 508 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L VS+DGRLR T GA TGR + QN+P Sbjct: 509 NLPPLVSADGRLRTTFVQTGA-ATGRMASQNPNLQNIP---------------------- 545 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R +AS G +V D + IE R+ A ++ ++ ++ FA GED++ Sbjct: 546 --IRTEESKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVA 603 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + F ++V++E R KV+ + Y G + Sbjct: 604 VRVFGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNL--------------------- 642 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + A+ + + ++ Sbjct: 643 ---------------------GEGTSREEAQEFFNAYFNTFTRLAEYLEETKAFARKNGY 681 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 RR + ++ ++ +Q R Sbjct: 682 TETLF--------------------------GRRRHFPGMQSTAPFIR---AQAERMAIN 712 Query: 594 GGKLTENIVQAISRDILCEGMKNATK--------NGYDIVLTVHDEIVSETPDTPYF-SV 644 VQ + D + M + + I+L VHDE++ E + + Sbjct: 713 AP------VQGTAADAMRVAMNLVYQYIQTEKKTDDVHILLQVHDELLFEIKNNVLETEI 766 Query: 645 GTLCSLMTKNPSWAK--GLPLKAEGYEAKRY 673 L LM G+P+KA+ + Sbjct: 767 PKLVELMQGVLEGYDTSGVPIKADVAVGPNW 797 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 94/637 (14%), Positives = 171/637 (26%), Gaps = 132/637 (20%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111 + L + D T V H+ G + T++ A L + Sbjct: 375 AALAAWFADPTPTKVGHDLKTAVNALT-ARGWPVGGVAC-DTALAAYLALPGQQTFDLGD 432 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + + + + + + + Sbjct: 433 LVQRYLHRTLDPEHSTNAGQ-QLSLIPEENEGAQTEQDSRDMVRARAIIDLAEA---LEQ 488 Query: 172 ELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L D E + + + G +D+D + LQ A E + Sbjct: 489 HLDSLGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIG 548 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDL--ILNRLAS 284 + + L++ LF G+ ++ T L + L +L Sbjct: 549 REV-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRDV 607 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + + L ++V DGR+ T Q A TGR S QN+P Sbjct: 608 TRLKVT-VEGLRKSVGDDGRIHTTFQQTVA-ATGRLSSTEPNLQNIP------------- 652 Query: 345 QALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + L+ AD + IE R++A ++ ++ I+AF Sbjct: 653 -----------IRTDEGRLIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIEAFR 701 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +GED++ KAF P ++V+ E R K M L GL Sbjct: 702 SGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGL--------------AYGLS----- 742 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + K+ + +A+ ++ GV +D Sbjct: 743 -------------------------AYGLSGQLKISVDEAKEQMEAYFSRFGGVRDYLRD 777 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 RR D+ D Sbjct: 778 TVARARKDGYTETIF--------------------------GRRRYVPDLNSDNRQKRAM 811 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 R +Q + D++ M N + ++L VHDE+V E Sbjct: 812 A---ERIA------LNAPIQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHDELVCEVV 862 Query: 638 DTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M A +PL+ + Sbjct: 863 ADELAVMTELLKQEMGGAYPLA--VPLEVSVGSGANW 897 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 87/572 (15%), Positives = 165/572 (28%), Gaps = 116/572 (20%) Query: 108 SLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 +LK+ + L A + + + D Sbjct: 379 NLKDDAAICGYLLNTSASDYAIEKLCAEYGVHYYSENGEFADLLSIELLIK--KLRSVID 436 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E EL +++ E L + ++ D G ID V + + ++ + +V Sbjct: 437 KEGMTELLEKI------ELPLTEVLASMEDIGICIDKQGVEDFGTYLTEMIEE-TQQMVY 489 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLA 283 G + L LF G+ ++ T +L D +L Sbjct: 490 DDAGHSFNIASPKQLGTVLFEEMGLPAKKKTKSGYSTNAEVLEELRNDAPIVDNVLKFRQ 549 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + ++ DGR+ + +RTGR S QN+P Sbjct: 550 YTKLNSTYVVGLLDKIADDGRIHTWFRQTE-TRTGRISSTEPNMQNIP------------ 596 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G+KLV AD + IE RV+A + G+ I+AF Sbjct: 597 ------------VRTELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFN 644 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +GEDI+ +T A+ F+ P V+ E R+ K + + Y G + + Sbjct: 645 SGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIG-----AFSLAKDIGTSVAK 699 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 +E+ D + + G + + K Sbjct: 700 AKKYINDYLAKYEKVNEFMETTVDNAFKDGYVTTMFGRK---------RRIPELSSSNKM 750 Query: 524 LTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + +A + + + + Y+ +K + Sbjct: 751 MQAAGKRIAMNTPVQGTAADLIKIAMINV------------------YNRLKAE------ 786 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 DI ++L VHDE++ E ++ Sbjct: 787 -------------------------DI-----------DAKLILQVHDELILEASESDAE 810 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L M +PL + + + Sbjct: 811 HAAQLLKEEMQNVYE--MKVPLSVDVHTGDSW 840 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 100/661 (15%), Positives = 194/661 (29%), Gaps = 140/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A + + V + + + + L + D T + + + K GID+ Sbjct: 327 RLHGVALS-GGDEVFYIEISGDQEI-ALLKAFFADATTKFFGYRTKRDNHALKNH-GIDV 383 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 VLA+ +F L + + + S P Sbjct: 384 HVTA--D-LVLAQHLVNGG-----AKI-SFQTLLVESGHIQEAAFFAKEWGASSLPVQNL 434 Query: 149 RANHVQAWQLF-------GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 N Q + +F Y +E + L + E+ L + + G + Sbjct: 435 PQNPAQYFGIFVSRLPSIKNYLFEKLE-EKGLKSIFKNV---EQPLEEILFAMECAGMPL 490 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D + +L L +++E + ++I L + + L L+ GI VD ++ T Sbjct: 491 DSEGLLVLDRDLSKELETYTQEIYDLAGCEF-NIKSPKQLSDVLYHRLGIKPVDKAKSTK 549 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRW 320 +L + IL A+ + L + R+ T G + TGR Sbjct: 550 AEVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVG-TVTGRL 608 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVA 379 S QN+P +R + A Sbjct: 609 SCQDPNLQNIP------------------------VRYERGKSLREAFRFTKENDYFLAA 644 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + +E R LA ++ ++ +AF +GEDI+ T ++ FN P+D+V++ QR K + L Sbjct: 645 DYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGL 704 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Q + K+ Sbjct: 705 --------------------------------------------AYGQQAYGLSKNLKIS 720 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + A+ A++ + E + + + R+ + Sbjct: 721 VNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESS--------- 771 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 P +R G +Q + +++ M N ++ Sbjct: 772 ---PGAR------------------------AASGRLAVNTRIQGSAAELIKLAMLNISR 804 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKR 672 ++L +HDE++ E P + L M S +PL K Sbjct: 805 ELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESAMS--LSVPLVVNVLIGKN 862 Query: 673 Y 673 + Sbjct: 863 W 863 >gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] Length = 875 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 87/679 (12%), Positives = 191/679 (28%), Gaps = 151/679 (22%) Query: 17 PKVGVWAYAEQAVITLCA--------YAWDDEPVKLWDRTE-----QSAMPSDLLQYLRD 63 + ++ Y E I L + ++ D V D + + Sbjct: 322 KENKLYLYFELEDIVLFSKSRIKILYVSFKD-EVYRIDFETLLKNTKEEFIEVCKEIFES 380 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSE 120 + + + ++S R + +K LG++ + ++ A + + F Sbjct: 381 KEIKKITYDSKNPRTVLRK-LGMEFNGINF-DINLAAYLIDPVRKEYEISSLASEYLFKN 438 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + E+ K N + E +D + L+ Sbjct: 439 INREDEDLK-----------------IKEVNIMPKLYKVLEEKIKDQDIEELLY------ 475 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E+ L + G+++D +++L+L++ E + +I +++ + Sbjct: 476 -KIEQPLTETLSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMSEEEF-NINSPKQ 533 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L LF + ++ ++ T +L D I + + L Sbjct: 534 LGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKA 593 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 A+ DG++ + TGR S QN+P Sbjct: 594 AIDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IK 628 Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R I + ++ AD + IE RVLA I+ + I AF +DI+ T ++ Sbjct: 629 YEMGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASEV 688 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F PID+V+ R+ K + + Y G + L++ + + E + Sbjct: 689 FKVPIDEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYP 743 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEG 535 + + + ++ + ++ R + V K + + Sbjct: 744 NVKIYLENIVEEAIQKGYVTTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSP 794 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 SA + + + + R+L + K Sbjct: 795 IQGSAADIIKLAMVNVH-------------RKLKEDNFKSS------------------- 822 Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 I+ ++ + L M + Sbjct: 823 -------------II----LQVHDE-----------LILNVYKDELEKIKALVKREMEQV 854 Query: 655 PSWAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 855 LELKVG--LDVDINIGNNW 871 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 104/666 (15%), Positives = 186/666 (27%), Gaps = 129/666 (19%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERIL 79 E A D D Q A ++L +LRD V H Sbjct: 398 PGRIGEDAAALAI---VRDGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFKAALKA 454 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + G+++ TS+ L + L F Sbjct: 455 LT-SRGLELEGV-VDDTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQLELSFD 512 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + A VQA + E ++ A EL L E + + + Sbjct: 513 GEDEAAADALVQSAAVVQALSRYFEGELKERRAE-ELLSTL------ELPVSRVLADMEL 565 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ID+ + +A+ + E + + L+ LF + Sbjct: 566 AGIGIDMARMDDQLADLARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKK 624 Query: 257 SEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + +LK++L + L L+ +R A+ L +L ++V+ DGR+ T Sbjct: 625 IKSGYTTDAASLKNLLEKTGHEFLV-QLMAHREAAKLRQ--MLESLKKSVAEDGRIHTTY 681 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P VR + Sbjct: 682 AQNVA-ATGRISSNNPNLQNIP------------------------IRSEEGRRVRGIFV 716 Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 G L+ AD + IE R++A ++G+ I+A+ +GED++ + F+ P ++V+ Sbjct: 717 VGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAM 776 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R+ K M L Y + L++ F+ + + + DQ Sbjct: 777 RSKVKAMSYGLAYG-----LTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQ 831 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + G R + + L E + + Sbjct: 832 ARVDGYTATIEGR---------RRYLPDLTSTDRQLRENAERIALNSPIQGSAADII--- 879 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + V + Q ++ Sbjct: 880 ------------------KRAMLGVHAELKA-----------------------QGLA-- 896 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 ++L VHDE+V E +V L M +PL+ + Sbjct: 897 -------------SRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAAD--LSVPLEVQI 941 Query: 668 YEAKRY 673 + Sbjct: 942 GVGPSW 947 >gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 899 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 96/677 (14%), Positives = 177/677 (26%), Gaps = 143/677 (21%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWD----RTEQSAMPSDLLQYLRDETVMCVAHNSLF 75 + A + + D + D + L L D V ++ Sbjct: 340 TLAPGRGDAQVVAVS---DGARSLVVDMTLLLAQDEEALDQL---LSDPDHPKVVADAKG 393 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKAL 131 + GI + ++ A + L E Sbjct: 394 SWHAL-RGRGIGLDGV-VADPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQAE--PQ 449 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 A + D P A+ +A L + + L ++ E + Sbjct: 450 TAFDLESLADGTPPRTLLASARRAACLLPLQEVLGEQMAQRGAVTLY--TELEMPVAACL 507 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + D G +D ++ + + E + + L+ +F + Sbjct: 508 AQMEDAGIAVDDSVLAAREVELDARVTHAAEAAFAAAGHEL-NLSSPKQLQAVIFDELKM 566 Query: 252 DLVDMSE---GTLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 ++ T L+ + L+ +R A + L +AV +DGR+ Sbjct: 567 PKTRRTKRGYTTDAEALAALYAKTGHPFLEHLLEHRDAIKLRQT--VEGLRKAVLADGRI 624 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T Q A TGR S QN+P +R Sbjct: 625 HTTFQQTVA-ATGRLSSTDPNLQNIP------------------------ARTEEGMRIR 659 Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 G+ L+ AD + IE R++A ++G+ I AF +GED++ A + V Sbjct: 660 EAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVAAMVHGIDVADV 719 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + EQR+ K M L Y T Sbjct: 720 TAEQRSHVKAMSYGLAYG-----LSTYGL------------------------------- 743 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 A + + ++ A+ A+ V + + Sbjct: 744 --------ARQLGIDNAEASALRDAYFARFGAVHDYLESVVAQARRDGWTQTMF------ 789 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 RR D+ D + +Q Sbjct: 790 --------------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQG 820 Query: 605 ISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657 + DI+ + M + ++L +HDE++ E +V L M+ Sbjct: 821 SAADIVKKAMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMSGAAQ- 879 Query: 658 AKGLPLKAEGYEAKRYR 674 +PL +R Sbjct: 880 -LSVPLDVSVGRGATWR 895 >gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4] gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4] Length = 1054 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 110/793 (13%), Positives = 194/793 (24%), Gaps = 203/793 (25%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA-YA-----WDDEPVKLWD-RTEQSAMPSDL 57 D E + + VG V+T + Y+ + + P D Sbjct: 341 ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 396 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLKN 111 ++L + + V HN F+R + GI++ T +AR SL++ Sbjct: 397 KEFLESKNYLKVWHNYSFDRHVLFNH-GINVQGLG-GDTMHMARLWNTARFQNGGYSLES 454 Query: 112 ACLALNFS-EHLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + K G L KG P + + + Y D E+ Sbjct: 455 LTADLLLQRKKPMKELFGIPKLKKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 514 Query: 170 TRELFKRLIPLSDG----------------ERDLW--------LLDQTINDRGYRIDLDL 205 T L + L D + + I RG +DL+ Sbjct: 515 TWFLHRVLQDKLDQTFWFEKPNGGESQVGSMYEFYREYIVPFGECLTDIERRGMHVDLEY 574 Query: 206 VLKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYL----FLI-------- 248 + +++ ++R +L++ + + + + L F Sbjct: 575 LAGVEKQALEDRARLEKLVLQWASRYCEESERINLYSAAQKQQLLFAPYFNKKKKEQVLP 634 Query: 249 -------------------------------TGIDLVDMSEG----TLKSILSHSNITQL 273 GI + +L Sbjct: 635 AERSFEVENTEGFIEEGKQKAKKKRNITIRGLGIPPTHFTASGLPAASAEVLKDLAGHPE 694 Query: 274 AKDLILNRLA---------------SSGS---------AILKLNTLSEAVSSDGRLRGTL 309 A R + L E S+ R+ +L Sbjct: 695 ANPPQYGRAYGHFEDKEEGAAACVALKALFDISSINTMLNNFILPLQELADSNSRVHCSL 754 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN P + +R Sbjct: 755 NLN--TDTGRLSSRKPNLQNQPAMGKDRY------------------------KIRDAFT 788 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A GKKL+VAD + +E R++A I I+AF G D + T Sbjct: 789 APPGKKLIVADYSQLELRLMAHITQCKAMIEAFKAGGDFHSRTAMGM--------YPYVA 840 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + E L + + + + Sbjct: 841 KAVENGEALLEWDHTTGK-----------EPPAPLLKDKYGDERKNAKVLNFSIAYGKTA 889 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A + + W + V K E + Sbjct: 890 FGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIETARTFGYTRTLLGRY-------- 941 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RRL + ++ D A R +Q + D+ Sbjct: 942 ----------------RRLPDAMLRDDSMTSKKARGHAERAAI------NTPIQGAAADV 979 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLP 662 + + M + G+ +V +HDEI+ E P+ L LM + Sbjct: 980 VMQAMLQVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPFQKPLSVA 1039 Query: 663 LKAEGYEAKRYRK 675 L+ + + K Sbjct: 1040 LEVDANVDDSWFK 1052 >gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO] Length = 838 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 75/615 (12%), Positives = 177/615 (28%), Gaps = 121/615 (19%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D T + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--RAFHSWITDPTRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A K E + + L E L ++ + G ++D Sbjct: 450 AHLARKVAAINALT-----PKLSQELAEKNQEDLFR--KMELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + +++ + +++++ I + + L + LF G+ ++ ++ T Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYST 561 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L + IL + + L + + SDG++ ++TGR Sbjct: 562 AVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQT-LTQTGRL 620 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVA 379 S QN+P +R + + + Sbjct: 621 SSVDPNLQNIP------------------------IRLDEGRKIRQAFVPREKDWLIYSS 656 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R K + Sbjct: 657 DYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + + FE + + + + + + + L Sbjct: 717 IVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETL 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 L R + + + SA + + + + + Sbjct: 772 YHRRRYLPDINSRNYN--IRSF------AERTAINTPIQGSAADILKIAMIELDK----- 818 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 +L E +QA Sbjct: 819 -------------------------------------RLKETGLQAT------------- 828 Query: 619 KNGYDIVLTVHDEIV 633 ++L VHDE+V Sbjct: 829 -----MLLQVHDELV 838 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 85/677 (12%), Positives = 183/677 (27%), Gaps = 147/677 (21%) Query: 17 PKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLLQYLRDE 64 + ++ Y E I L + YA + V D + + + Sbjct: 322 KENDLYLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCKEMFEGK 381 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 + + +++ R + +K LGI+ ++ ++ A + + F Sbjct: 382 EIKKITYDAKNPRTILRK-LGIEFNGIKF-DINLAAYLIDPVRKEYEISSLASEYLFKNI 439 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K + + Sbjct: 440 NREDEFLKIKEVNIMPNLYKVLEEKIKEQDMEELLYKV---------------------- 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + G+++D D++L+L++ E + +I +++ + L Sbjct: 478 --EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L D I + + L A Sbjct: 535 GKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAA 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + TGR S QN+P Sbjct: 595 IDEDGKIHSNFNQTV-TATGRLSSTEPNLQNIP------------------------IKY 629 Query: 359 LASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 630 EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PI++V+ R+ K + + Y G + L++ + + E + Sbjct: 690 KVPIEEVTPLMRSNAKAVNFGIVYGIG-----DFSLSQDLNITRKEAKQYIDAYLERYPN 744 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + + + ++ E ++ R + V K + + Sbjct: 745 VKLYLENIVEEAVEKGYVSTILNR---------RRYIKEVKSSNKIVKAAGERLAMNSPI 795 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + +L +V N +S Sbjct: 796 QGSAADII---------------------KLAMVNVHKKLKEDNFKSS------------ 822 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 I+ ++ + L M + Sbjct: 823 -----------II----LQVHDE-----------LILNVHKDELEKIKALVKKEMEQVLE 856 Query: 657 WAKGLPLKAEGYEAKRY 673 G L + + Sbjct: 857 LKVG--LDVDINIGNNW 871 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 95/592 (16%), Positives = 170/592 (28%), Gaps = 122/592 (20%) Query: 94 ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + SL+ + + E+G+A+ F ++ + Sbjct: 403 FDIYLGGYVLNPSDERYSLEVMSKKYL--DIDLEEEKGEAVQQSFLDIEDNNKYNMQMKK 460 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 K E +L++ + E L + + G+++DL+ + +L Sbjct: 461 AKSIYSLAGIFKEKIKEEEMEDLYQNI------EHKLMYVLGDMELEGFKVDLNTLEELG 514 Query: 211 ELIAQERKKLDEDIVKLTDG-IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 + + L +I + + T L LF G+ + ++ T +L Sbjct: 515 VDFDKRVEDLTRNIREAAGEDEDFNVNSTKQLGHVLFDKMGLPALKKTKTGYSTNIEVLE 574 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVF 325 +I++ S + L + D ++ T + TGR S Sbjct: 575 KLRDHHPIIPMIIDLRQISKLNSTYVKGLVSLIDKDTNKIHSTFNQT-ITTTGRISSSNP 633 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGI 384 QN+P +R I +S LV AD + I Sbjct: 634 NLQNIP------------------------VRTEEGRIIRKVFISSSENNVLVDADYSQI 669 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA I+ ++ I +F N EDI+ T ++ FN PID+V+ E R+ K + + Y Sbjct: 670 ELRVLAHISKDEKLINSFKNNEDIHTRTASEVFNVPIDEVTSEMRSSAKAVNFGIVYG-- 727 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 GL + + + + + + E + Sbjct: 728 ---ISDFGLAKGLSIARKDAKEYIDTYLSKYPGVCKYMEDIVVTAKEQGYVTTMFNR--- 781 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + ++ Sbjct: 782 ------RRYINEIYSKNFNVRSF------------------------------------- 798 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY 622 G+ + LNT KL VQ K Sbjct: 799 ----------GERTALNTPIQG---SAADIIKLAMVNVQ-----------NELNKRKLKA 834 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ +TP V L M PLKA+ K + Sbjct: 835 KLILQVHDELIIDTPMEEVEEVKALLKDKMENVVD--MSCPLKADISVGKTW 884 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 92/540 (17%), Positives = 154/540 (28%), Gaps = 118/540 (21%) Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 Y A H + + + VE + L + + E L + + G IDL Sbjct: 408 YAPEIAVHRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPLVPVLCRMESAGIGIDLA 467 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGT 260 + + L I L + R T LF G+ + T Sbjct: 468 AFDNFLRQVKKSLDDLTASIYSLAGKEF-NIRSTQQTAQVLFDELGLKARRKTPKGAYST 526 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L DLIL L L V GRL T A+ TGR Sbjct: 527 SNVVLESMRRDHDIVDLILQYRTLEKLRSTYLEPLPRKVDVGGRLHTTFNQL-ATATGRL 585 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P G +R+C S GK LV AD Sbjct: 586 SSSNPNLQNIP------------------------IKGEFGPRMRACFKPSKGKLLVAAD 621 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA ++ + ++AF EDI+ T F+ I +VS+++R K + Sbjct: 622 YSQIELRILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTIN---- 677 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ + + + + Sbjct: 678 ----------FGLLYGMGP------------------------------QKLSRELSISM 697 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + +K V ++ + E Sbjct: 698 EEAKEFISVYFSKLDRVRDFYQQIEEKAQEQGYVTTM----------------------- 734 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618 + RR + D+ + + + ++Q + D++ + M Sbjct: 735 ---AGRRRLLPDINSRNTNMAQQARRT---------AVNTVIQGSAADVIKKAMLAVDSD 782 Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 G +VL VHDE++ E L +M S +PL E + + Sbjct: 783 SELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARVMAGVES--LEVPLLVEWGTGENW 840 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 95/648 (14%), Positives = 169/648 (26%), Gaps = 138/648 (21%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D E L ++ D V HN+ +F + G + T++ A Sbjct: 371 WLDPAELDEADEQALAAWIADPRRPKVMHNAKNALRVFPEQ-GWRLEGVSM-DTALAAYL 428 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L +G +A ++ + + Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPAPSADG--QLAFGADDRAEADALMAQARAVLDLGEA 486 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F + V AT L D E +L + G D + +++ A + Sbjct: 487 FAVRLEE-VGATGLLH-------DMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQ 538 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273 + ++ + L+ LF + ++ + Sbjct: 539 QAVKEAHAAVGREF-NLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHE 597 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + + L + + DGR+ T A TGR S QN+P Sbjct: 598 LPVIMLRHREQAKLRVT-VEGLIKTIGQDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 653 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392 +R + G L+ AD + IE RV+A + Sbjct: 654 ----------------------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHL 691 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF +GED++ T ++ F V E R K M L Sbjct: 692 SEDAGLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGL------------- 738 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GL SQ + + + + Sbjct: 739 -AYGLSAFGLSQQLNIDAG------------------------------EARGLMDTYFQ 767 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV + E + RR D Sbjct: 768 RFGGVRDYLHRVVEEARATGYTETIL--------------------------GRRRYLPD 801 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626 + D R +Q + DI+ M + + ++L Sbjct: 802 LNSDNR---------QRREAAERMALNAPIQGTAADIVKVAMLHVDRALTEARLTSRMLL 852 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDEIV E V + M+ PL + + Sbjct: 853 QVHDEIVLEIAAGEREQVEEILRREMSTAVELRA--PLDVSVGVGRDW 898 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 379 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 438 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 439 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 496 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 497 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 545 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 546 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 604 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 605 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 661 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 662 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 696 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 697 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 756 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 757 SKIKAMNYG--------------LAYGLS------------------------------A 772 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 773 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 821 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 822 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 857 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 858 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 915 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 916 LTVSIGVGRSW 926 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 83/571 (14%), Positives = 142/571 (24%), Gaps = 113/571 (19%) Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L E + F + + +A + E Sbjct: 405 ELADYLLHPEESRRDIA--RAAFAFLGTATSAEGLSSEAYAVREALLGARLQPVMETELA 462 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L E L + + G +D + + + + L +I L Sbjct: 463 AQGLMQLYRTV--ELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHTLAGA 520 Query: 231 IIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF G+ T L D +L + Sbjct: 521 EF-NISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTYRMWT 579 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L+ + + GR+ + + TGR S QN+P Sbjct: 580 KLRSTYLDGIGALIRPATGRVHTSFNQTV-TATGRLSSSDPNLQNIP------------- 625 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR+ G L+ AD + IE R+LA ++G+ I AF Sbjct: 626 -----------VRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFR 674 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +G+DI+ T A+ F P+D V+ EQR K + + Y L + + Sbjct: 675 HGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYG-----LSDFGLARDLGIGRRE 729 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 FE + + + L G R + Sbjct: 730 AGGYIDRYFERYHGVRTFLDKIVADAHTNGYVTTLYGR---------RRALPALASRNYM 780 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + +V Sbjct: 781 QRSFAERMAMNTPIQGTAADLIKIAMVRAYDALQ-------------------------- 814 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 + D+ I+L VHDE+V E + Sbjct: 815 ----------------------AADV-----------KSRILLQVHDELVMEVTAEETET 841 Query: 644 VGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V L M+ A +PL + + K + Sbjct: 842 VTELLRTAMSGAAELA--VPLAVDVHVGKNW 870 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis] Length = 875 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 92/631 (14%), Positives = 171/631 (27%), Gaps = 148/631 (23%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L D+++ + ++ L K ++ S KN Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNL---- 429 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 K + LI S + + T L+ Sbjct: 430 ------FKEVLKETLIDNIIIESAKIVINFISLYKQTIL--------ELKDNKTFRLYSN 475 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + + + + G +D + + +L E KL+E+I L+ + Sbjct: 476 I------DLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIG 528 Query: 237 QTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAIL 290 L LF + S T IL + DL+L + Sbjct: 529 SPKQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNT 588 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++L + + + T ++ TGR S QN+P Sbjct: 589 YTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP------------------- 629 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ Sbjct: 630 -----IRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHT 684 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + FN +++ E R K + G+ Sbjct: 685 QTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 718 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A + + K + A+++GV + + Sbjct: 719 ------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA-- 758 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ R+ + R Sbjct: 759 ------------------------SSNGYVTNFFGRKCFVPLIHDKK-----LKQLAERA 789 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M N K +VL +HDE++ E P + Sbjct: 790 AINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEII 843 Query: 645 GT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + +M S +P+ E + Sbjct: 844 TPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 94/640 (14%), Positives = 172/640 (26%), Gaps = 148/640 (23%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 T + + L D+++ + ++ L K ++ Sbjct: 368 TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGL 424 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S KN K + LI S + + Sbjct: 425 SQKNL----------FKEVLKETLIENIIIESAKIVINFISLYKQTIL--------ELKD 466 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T L+ D + + + + G +D + + +L E KL+E+I L Sbjct: 467 NKTFRLYS------DIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFAL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281 + + L LF + S T IL + DL+L Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 579 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++L + + + T ++ TGR S QN+P Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIP---------- 629 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + +R IA G KL+ AD + IE R+L+ IA D +A Sbjct: 630 --------------IRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F N +DI+ T + FN +++ E R K + G+ Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + K + A+++GV + Sbjct: 719 ---------------------------AFGLAKQLNATNGEASEYIKKYFAEYKGVQEYM 751 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + ++ R+ + Sbjct: 752 EQTKAFA--------------------------SSNGYVTNFFGRKCFVPLIHDKK---- 781 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635 R +Q + DI+ M N K +VL +HDE++ E Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 P + + +M S +P+ E + Sbjct: 835 APIDEVEIITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSLEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 179/652 (27%), Gaps = 156/652 (23%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILF-KKTLGIDIPSKR 92 YA D V +E +L+ L D V V F+ + + Sbjct: 347 YAVQDTTVY--PLSE-----EELVSLLDDPKVTLDV-----FDSAPLYARAMAAGSWGSS 394 Query: 93 WI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + + A +S + T A A C+ Sbjct: 395 IVWDGKLAAYLLDASAS------HYLLTTLATSY---HARSAFSCEE------------- 432 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + A L + K E T L + L + + G +D + + Sbjct: 433 YPDAGFLADLFAKMKAEITENGEDDLYNNIEF--PLAQVLADMTRTGILVDREGIEAFGV 490 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268 + QE ++ I + L LF G+ ++ T L Sbjct: 491 QLRQELDQVLTRIEMEAGTSDFNPNSPKQLGTLLFDTMGLPHGKKTKNGWSTDAETLEKL 550 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L +D IL A + L + + DGR+ A RTGR S Q Sbjct: 551 RDIPLVED-ILQYRACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQ 608 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R+ +A G LV AD + IE R+ Sbjct: 609 NIP------------------------IRTEMGSKLRAYFVAKPGCVLVDADYSQIELRI 644 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA + G+ +AF +G DI+ +T AK +N + V+ R+ Sbjct: 645 LAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSA---------------- 688 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 +A + + + + E + Sbjct: 689 ----------------------------KAINFGIMYGKGAYSLSKDIGVSVKEAEAFLQ 720 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A + + + RR Sbjct: 721 TYLATFPNIDGYMEKTIADARQCGY--------------------------VSTLFGRRR 754 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622 ++ + + + ++ R +Q + D++ M K Sbjct: 755 ALPELNSNNHNIRASGERMAR---------NTPIQGTAADVIKLAMVRVWRRLRNEKMES 805 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++LTVHDE++ E P+ + M +A +PL + + K + Sbjct: 806 RLILTVHDELIVEAPEAEAEKAAQILREEMEGCVHYA--VPLSTDVHTGKNW 855 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 90/559 (16%), Positives = 147/559 (26%), Gaps = 123/559 (22%) Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----LSDGER 185 L A + + P R + REL L + E+ Sbjct: 466 LYAYLLDPANTNMPVVAKRYLDREWPADAPTRAAITGHLVRELPPLLDDARRKMYDEMEK 525 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + RG ++D D + L L+ I + R L L Sbjct: 526 PLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEFH-IRSPKQLETVL 584 Query: 246 FLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 + + ++ T S L L+L L+ + V+ Sbjct: 585 YDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIPNLVN 644 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GRL T A TGR S QN+P Sbjct: 645 PHTGRLHTTFAQT-AVATGRLSSLNPNLQNIP------------------------IRSE 679 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 680 LGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGL 739 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V QR K + G+ + S ++ Sbjct: 740 DEATVDANQRRAAKTVN--------------FGVLYGMSAHRLSNDL------------- 772 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + A + G+ + Sbjct: 773 -----------------GIPYAEAATFIEIYFATYPGIRRY------------------- 796 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + + ++ RR + A +L Sbjct: 797 -------INHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERL---------AYN 840 Query: 600 NIVQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 +Q + DI+ M G ++L VHDE++ E P V L +M Sbjct: 841 MPIQGTAADIMKLAMVQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV 900 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL E + Sbjct: 901 VQ--LKVPLAVEVGTGPNW 917 >gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9] Length = 960 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 173/659 (26%), Gaps = 140/659 (21%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D + D L + L H + + + +P T++ Sbjct: 415 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 471 Query: 99 LARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL++ + + D + Sbjct: 472 AGYLIDPDFQGGSLQDCADHFLHRH--AEEVTETEQGTLDIGMDDERAERDRKVVRNAAI 529 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 L + + L+ D E + + G +D + +L E+ Sbjct: 530 VSLLAR--TLARQLEQRCQYSLLR--DIELPTSVALFHMEHTGASVDRARLDELLEMFTD 585 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSI 264 E ++++ + + + + L + LF G++ ++ TL + Sbjct: 586 ESNRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTKRGSYSTNAKALTTLYAT 644 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +L + + TL +A++ DGR+ T A TGR S Sbjct: 645 SEEGSRPNEFLGALLRHREVNKLR-QIVQTLIDAINPRDGRIHTTFTQTVA-ATGRLSSV 702 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382 QN+P +RS + G L+ AD + Sbjct: 703 DPNLQNIP------------------------NRNATGRDIRSAFVPGEGFADLLSADYS 738 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 +E R++A ++G++ IKAF +G D + + + P+D+V+ +QR K M L Y Sbjct: 739 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG 798 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 T L + Sbjct: 799 -----LSTYGLSQQL---------------------------------------GIPSKE 814 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 ++ + V + L Sbjct: 815 AAALRSRYFQTFGKVHDYLESLVSNARNTGYTQTMF------------------------ 850 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR + + A + +Q + DI+ M + Sbjct: 851 --GRRRYFPALTSANRVARDAAERG---------ALNAPIQGTAADIMKIAMIRVDRALR 899 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 IVL +HDE+V E V L M + A +PL ++ Sbjct: 900 DGNLNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHAVNIA--VPLDVSTGVGSDWQ 956 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 90/658 (13%), Positives = 180/658 (27%), Gaps = 135/658 (20%) Query: 32 LCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + + ++ + ++ R+ + + +N GI Sbjct: 365 GFAVSSLKDDFYIPLGHTPLFHKNLDLDKVKEFFRNSDSIFITYNFK----PLLN-EGIK 419 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + E + G + K ++P Sbjct: 420 IKNMDM-DLMI-AYHLISSQTKEGV-------EIPLEQLSGIDIAPYSEKFGKEAPGNLS 470 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDL 205 T + + A E+ + L L + E L + + +G +ID Sbjct: 471 TEEYGKFLVERSKGIMETYGIAMEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDPVY 530 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 K ++ + L + I ++ + L LF +D V ++ T + Sbjct: 531 FAKYEKELEILLNNLQKKIFEIAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDE 589 Query: 263 SILSHS-NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L N IL + ++ L + S RL T G + TGR S Sbjct: 590 EVLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSRDRLHTTFNQIG-TTTGRLS 648 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA NG L+ D Sbjct: 649 SSNPNLQNIP------------------------VKTDEGMKIRQGFIADNGNVLMGIDY 684 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++ ++ I A+ N ED++ T K F Sbjct: 685 SQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF------------------------ 720 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + + + + + + + Sbjct: 721 -------------------ELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQK 761 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + ++ V K + RR+ + K Sbjct: 762 EATDYINRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKN----- 816 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA---- 617 Q R +++Q + +IL + M Sbjct: 817 ------------------------QAERMA------VNSVIQGTAAEILKKVMIEIFKVI 846 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E + T+ ++M + + + L K + Sbjct: 847 ENKEDISLLLQVHDELIFEIKEEKVEEYRTTIENIMRNSVKF-DDVVLDINTNIGKNW 903 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 114/677 (16%), Positives = 207/677 (30%), Gaps = 140/677 (20%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLF 75 +VGV + + A+A + L +L + H++ Sbjct: 327 ARVGVASRESDGEVEGLAFAV-GGEGGYVRLAALTPDDETALADWLASDA-PKAVHDAK- 383 Query: 76 ERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKAL 131 L + + T++ A SL + L E + G Sbjct: 384 --PLLHRLRARGLRLGGLTSDTALAAYLVRPGQRSFSLDDLVLRHLQRELRAEEPGG-GQ 440 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 ++ + +S A V+A + D E R + L+D E L L Sbjct: 441 LSLLDEEEDESG--KAATAAIVRASAVAELADVLDTELHRTGQE--GLLADLELPLLALL 496 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G +D + + L+ A K+ +D + I + L++ LF G+ Sbjct: 497 AEIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEI-NLGSPKQLQVVLFDELGM 555 Query: 252 DLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 L+S+ + L +L + ++ L +AV+ DGR Sbjct: 556 PKTKKTKTGYTTDADALQSLFESTQHPFLQH--LLAHRDVTRLKTT-VDGLLKAVADDGR 612 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T A TGR S QN+P + Sbjct: 613 IHTTFHQTIA-ATGRLSSTDPNLQNIP------------------------IRTDEGRRI 647 Query: 365 RSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R + G +L+ AD + IE R++A ++G++ I+AF +GED++ +KAF+ P + Sbjct: 648 REGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGE 707 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ EQR K M L GL +Q ++ + Sbjct: 708 VTAEQRRRVKAMSYGL--------------AYGLSEYGLAQQLRIPAA------------ 741 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 +A+ ++ GV + + E + Sbjct: 742 ------------------EAREQMEAYFSRFGGVRDYLQSIVEEARKKGYTETIL----- 778 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 RR D+ D ++ +Q Sbjct: 779 ---------------------GRRRYLPDLNSDNRQRREMAERM---------ALNAPIQ 808 Query: 604 AISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 + DI+ M ++ ++L VHDE+V E D +V +L M Sbjct: 809 GSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAAVESLVREHMGNA-- 866 Query: 657 WAKGLPLKAEGYEAKRY 673 + +PL+ + + Sbjct: 867 FQLSVPLEVSVGVGRSW 883 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 183/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ V H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKVMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R ++ Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGVVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 507 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 244 bits (623), Expect = 4e-62, Method: Composition-based stats. Identities = 91/671 (13%), Positives = 181/671 (26%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 338 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 397 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 398 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGED 455 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 456 HFAESMERAVAVTRLADVME---------KEVEARGGAEL--LHDVEMGVQRCLISMERA 504 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D D+ L+ + + ++ G + L+ LF + + Sbjct: 505 GIAVDTDIFEGLRSEFDERVTRA-QEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRT 563 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 564 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 620 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 621 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 655 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 656 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 715 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 716 SKIKAMNYG--------------LAYGLS------------------------------A 731 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 732 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 780 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 781 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 816 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 817 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 874 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 875 LTVSIGVGRSW 885 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 87/662 (13%), Positives = 188/662 (28%), Gaps = 141/662 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85 + +D+ + + ++ + ++ + + +++N + LG Sbjct: 84 LGIIISTEDKD-FYFPLNHGGLLAKNIDKNLVVNFISELNIKFISYNFK----VLLN-LG 137 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142 I+ ++ + + + K GK I + D Sbjct: 138 INFK-SMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGK--INIELITAQDF 194 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y + + A Y + + + L + E L + + +G ID Sbjct: 195 SKYLSATSIGILAIYDELNYLLKKEDLYKILM-------ENEMPLIQVLSLMERKGIEID 247 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + + +E ++++ I + + L LF+ + ++ Sbjct: 248 IQYFKNYSLELDKELLRIEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 306 Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L L+L+ + ++TL V + R+ T G + TG Sbjct: 307 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TATG 365 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R +A GK L+ Sbjct: 366 RLSSSDPNLQNIP------------------------VKTDDGIKIREGFVAGAGKVLMS 401 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437 D + +E RVL ++ ++ I+A+ +D++ T + FN + VS+EQR I Sbjct: 402 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIA----- 456 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + + + A + K Sbjct: 457 ---------------------------------------KIINFSIIYGKTPFGLAKELK 477 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + ++ V +++ E Sbjct: 478 IPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLF------------------- 518 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R+ S + T SQ R ++Q + ++L + M Sbjct: 519 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 562 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E + + +M + + L K Sbjct: 563 YDVLKDKEDITLLLQVHDELIFEVEENSVEKYSEILADIMKNTVQL-EDVKLNININIGK 621 Query: 672 RY 673 + Sbjct: 622 NW 623 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 97/654 (14%), Positives = 177/654 (27%), Gaps = 137/654 (20%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67 T + G+ + I L A +D PV ++D + ++ + L + L++E V+ Sbjct: 1309 THCGLDIETTGLEVF--DEKIRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + N F+ T + ++ ++ + + K Sbjct: 1367 KIIQNGKFDAKFLMHN---KFEVANIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLN 1419 Query: 128 GK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + + + L Y K E RE + ++D E Sbjct: 1420 VTLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICREN---MGTVNDIENK 1476 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + G +DL+ + K I E + + + + L Sbjct: 1477 CILPICDMELNGITVDLESLSKSTNEILSELNEETSKLKAELKDEEINVNSQQQVLKALQ 1536 Query: 247 LITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304 D+ + E T S L + + L R L + ++ + Sbjct: 1537 NKNVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRR-LYKLYSAFYLKLPQHINKKTNK 1595 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T + +GR+S Q +PRQ + Sbjct: 1596 IHTTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNI 1626 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R I ++AD IE ++ A I +D +KA+ N D++ T + I V Sbjct: 1627 REIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIADV 1686 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE R I K + L Y K A+ Sbjct: 1687 NKEDRHIAKAINFGLIYGMNYVNLKNYANTY----------------------------- 1717 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + C ++ ++G+ + + + S + R Sbjct: 1718 ---------YNLNMNLDQCLYFYNSFFEHYKGIYRWHNQI----KQMRALEYSTLSNRKV 1764 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 P K VQ Sbjct: 1765 IFPYFSFT-------------------------------------------KALNYPVQG 1781 Query: 605 ISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTK 653 DIL + KN I+L VHDEI+ E ++ L M Sbjct: 1782 TCADILKLSLVELYKNLRPINGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1835 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 68/497 (13%), Positives = 141/497 (28%), Gaps = 107/497 (21%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + + G+++D+ V E++ E +++ ++I + T L Sbjct: 491 DIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEF-NINSTREL 549 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF G+ ++ T +L L+L + + + L + Sbjct: 550 GAILFDKLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYRKLTKLSSTYVTGLLKV 609 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 D R+ + +RTGR S QN+P Sbjct: 610 TGPDQRVHSVFRQTE-TRTGRISSTEPNMQNIP------------------------IRT 644 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G L+ AD + IE R+LA I+ + I AF G DI+ T ++ F Sbjct: 645 ELGSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFG 704 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P + + E R K + + Y G + +++ + + Sbjct: 705 VPAEVLPAELRRRAKAINFGIVYGIG-----AYSLSQDINVSVAEAKEYIENYLHTYSGV 759 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGS 537 + + + + + G L + + + Sbjct: 760 RQYMNDIVESSAKSGYVKTMFGRVRHL---------PEITSSNHNTKAFGERVALNTPIQ 810 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 +A + + + + Y +K + Sbjct: 811 GTAADIIKIAMVKV------------------YRRLKEE--------------------- 831 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPS 656 +S ++ DE++ E + M Sbjct: 832 ------GLSAQLI----LQVH-----------DELLIEVSKADAPRAKVILKEEMEHAAD 870 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL + E + + Sbjct: 871 --LSVPLSVDVSEGENW 885 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 84/577 (14%), Positives = 160/577 (27%), Gaps = 128/577 (22%) Query: 116 LNFSEHLTK-----MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + E K E K + DS + ++ + + Sbjct: 317 YDLKEIKKKVELDIDENLKDIKVISWINDPDSGGIKKHKDEQIEVFVKRVSSLAKSEFKK 376 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + K + + E + + + G +I+ V ++ + + + K+++ I Sbjct: 377 LKENKLVKLYKEIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYCKE 436 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS----NITQLAKDLILNRLA 283 + L LF G++ ++ T + L D IL Sbjct: 437 EF-NLNSPKQLSFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRE 495 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S L ++ D R+ T + G + TGR S QN+P Sbjct: 496 LSKLKSTYTLNLLNYMADDKRIHTTFKQTG-TATGRISSINPNLQNIP------------ 542 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + +R C A G + V D + IE R+LA ++ ++ I AF Sbjct: 543 ------------VGSIYGKRIRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFI 590 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 N EDI+ T + F ++V + R + K + GL Sbjct: 591 NDEDIHNKTAKEIFGV--EEVDPKHRRLAKAVNF--------------GIIYGLSPY--- 631 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A + + ++ + + + GV Sbjct: 632 ---------------------------GLARDTGITQSEAKVFIERYFNLYPGVKNYIDS 664 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + + R+ D+ L Sbjct: 665 IIKEAKEKGYTETIL--------------------------GRKRFIKDINSANRMLKQ- 697 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637 + R +Q + DI+ M N K ++L +HDE++ E Sbjct: 698 --RAERIAINAP------IQGSAADIIKLAMINIYKYLQKTQIDVKMILQIHDELLFEVK 749 Query: 638 DTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M +PLK K + Sbjct: 750 EDIVEDFVQEFKNRMENVIK--LKVPLKVNYSTGKNW 784 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 92/650 (14%), Positives = 185/650 (28%), Gaps = 158/650 (24%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D V +WD+ + +++L L D + + N E F + G+ + S+ Sbjct: 363 DHKVYVWDKALLND--ANMLALLCDGAIKKIVPNPK-ELYKFMQGKGVSLQGV-IGDPSL 418 Query: 99 LARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 A +K+ T + Sbjct: 419 AAYLYEPGETHYDVKSLAETYLP------------------------ASCGGTAQDVEAL 454 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 + D E L + + G +D ++ ++ + + + Sbjct: 455 MPVLEGLMAERGLTEL--------YRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTK 506 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQ 272 + L++ + + L + LF G+ ++ ++ T S+L Sbjct: 507 QVADLEQKAKEEAGEDF-NVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEH 565 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + I+ S L L ++ + GR+ A+ TGR S QN+P Sbjct: 566 PIIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFNQ-MATVTGRLSSTDPNLQNIP 624 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 +R + G L+ D + +E RV+A Sbjct: 625 ------------------------TRTEVGKQMRRMFVPGKGYDLLMSCDYSQVELRVMA 660 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 IAG++ I AF +G+DI+ T ++ F PI+ V+ R+ K + + Sbjct: 661 SIAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGII---------- 710 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ + + + ++ Sbjct: 711 ----YGISDF------------------------------GLGRQLGVPRSEAAQYIDSY 736 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A++ GV + + + + + RR Sbjct: 737 FARYTGVKEYMEGEKKKAREMGY--------------------------VETLFGRRRYL 770 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624 D+ + R +Q + DI+ M + K + Sbjct: 771 PDIHAKNFNRRSFA---ERTAI------NTPIQGTAADIIKIAMLHVAKELKEAGVKSRV 821 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE+V E + V + M + + +PL A+ K + Sbjct: 822 LLQVHDELVLEVVEEEKDKVSAIVKNAMERAVT--LKVPLVADIAFGKTW 869 >gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36] gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative [Streptococcus sanguinis SK36] Length = 880 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 88/659 (13%), Positives = 178/659 (27%), Gaps = 147/659 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 + A+ + + L Q +T + ++ + G Sbjct: 337 EVVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDIKRAKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L + + + + FE + +++ + + Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREA 761 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 + + + R + ++ + SA + V Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + R L + K Sbjct: 813 INLD-------------RALTEKNFKS--------------------------------- 826 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + IVL E P+ +V L M A +PL A+ Sbjct: 827 ---RMLLQVHDE---IVL--------EVPNDELTAVRKLVKETMETAIELA--VPLVAD 869 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 100/682 (14%), Positives = 187/682 (27%), Gaps = 132/682 (19%) Query: 8 IETRSPQPLPKVGVWAYA-EQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDET 65 +E+ PL V +A ++ A A P +D ++ +++ D Sbjct: 350 LESHRDAPLGLATVDTWALGSGSVSEIALATGSGPAAFFDPSQLDEADERTFAEWIADPD 409 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNAC-LALNFSEH 121 V HN+ +F + G + T++ A L L E Sbjct: 410 RPKVLHNAKGIMRVFAEH-GWSVAGVTM-DTALAAYLVKPGRRSFELDALSVEYLG-REL 466 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + +A + + + FG K DV A L Sbjct: 467 SPAVAADSGQLAFGADDEAERDALMIKARTILDLGEAFGGRLK-DVGAAGLLH------- 518 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E + L + G D + ++++ A + ++ + L Sbjct: 519 DMELPVSELLARMERSGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGHEF-NLGSPKQL 577 Query: 242 RMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + LF G+ L + ++ L +R + + + Sbjct: 578 QEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIML-RHREQARLRST--VEG 634 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + ++ R+ T A TGR S QN+P Sbjct: 635 LIKTIAPGSRIHTTFNQTVA-ATGRLSSTDPNLQNIP----------------------- 670 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + +G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T Sbjct: 671 -VRTDEGRAIRRGFVVGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVA 729 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F+ V E R K M L Y L + + FE Sbjct: 730 SQVFSVDKSAVDPEMRRKIKAMSYGLAYG-----LSAFGLSQQLGITPDEARKLMENFFE 784 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + + ++ + ++G R + + E + Sbjct: 785 RFGGVRDYLQRVVEEARATGYTETMLGR---------RRYLPDLTSDNRQRREMAERMAL 835 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 A++ ++ M + + SSR L Sbjct: 836 NAPIQGTA--ADIVKIAMLKVDAALTGEKLSSRML------------------------- 868 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 EIV E V L + Sbjct: 869 ---------------------LQVHD-----------EIVLEIAPGERERVEELVR---R 893 Query: 654 NPSWAKGL--PLKAEGYEAKRY 673 + A GL PL + Sbjct: 894 EMTGAFGLSAPLDVSVGSGSDW 915 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 95/622 (15%), Positives = 183/622 (29%), Gaps = 149/622 (23%) Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKR-WICTSVLARTNGLPSSLKNACLALNFSEH 121 ++ + +N+ KK + + ++A N E Sbjct: 351 SSEILKIIYNAK---EALKKLKNSGLKLSPPYFDLMIVAYLINPNRG------KYNIDEL 401 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 GK F + + + + +F Y K + E + + L Sbjct: 402 -ILEYTGK-----FYENAEN------------INFYMFELYEKLNKELKEKELENLY--F 441 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + + G +++++ + L + I+ E K+ E I + + L Sbjct: 442 DIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEF-NINSPKQL 500 Query: 242 RMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 L+ G+ + T +L I ++N + L L + Sbjct: 501 AEVLYDRLGLKTRKRGKKARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPLRDY 560 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ R+ A TGR QN+P Sbjct: 561 INPETKRIHTKWSQTVAG-TGRIVSSEPNLQNIP------------------------VK 595 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G ++ +R I NG + AD + IE R+LA ++ + IKAF +G+DI+ T ++ F Sbjct: 596 GEWAEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASEIF 655 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + P + V+ E R I K + + G+ S+++K Sbjct: 656 SIPENAVTDEHRRIAKTVNFGI--------------SYGISPFGLSESIK---------- 691 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + E + + + ++ V + ++ Sbjct: 692 --------------------IPYEKAEELIELYFLRYPMVRKFIEETISFAQKNGYVRTL 731 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 R ++ +L Q R Sbjct: 732 F--------------------------GRIRPLPEINSPNQFLR---MQSERMA------ 756 Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-L 650 VQ + DI+ M K I+L +HDEIV E V + Sbjct: 757 VNARVQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIEKVSEIVQNE 816 Query: 651 MTKNPSWAKGLPLKAEGYEAKR 672 M ++ +PL+ + Sbjct: 817 MK---DFSLSVPLEVNVFSGNS 835 >gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5] gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5] Length = 875 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 92/640 (14%), Positives = 173/640 (27%), Gaps = 148/640 (23%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 T + + L D+++ + ++ L K ++ Sbjct: 368 TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGL 424 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S + L K + LI S + + Sbjct: 425 S----------QKILFKEVLKETLIENIIIESAKIVINFISLYKQTIL--------ELKD 466 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T L+ D + + + + G ++ + + +L E KL+E+I L Sbjct: 467 NKTFRLYS------DIDLPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIFAL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281 + + L LF + S T IL + DL+L Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 579 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++L + + + T ++ TGR S QN+P Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIP---------- 629 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + +R IA G KL+ AD + IE R+L+ IA D +A Sbjct: 630 --------------TRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F N +DI+ T + FN +++ E R K + G+ Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + + K + A+++GV + Sbjct: 719 ---------------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYM 751 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + ++ R+ + Sbjct: 752 EQTKAFA--------------------------SSNGYVTNFFGRKCFVPLIHDKK---- 781 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635 R +Q + DI+ M N K +VL +HDE++ E Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 P + + +M S +P+ E + Sbjct: 835 APIDEVEIITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 112/696 (16%), Positives = 194/696 (27%), Gaps = 166/696 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-PSDLLQY 60 S LF+D ET S I L ++E V + D E + L Sbjct: 23 SYLFLDTETVSE---------------KIRLVQLG-NNEDVFIVDLFETGSYGVDFLKDL 66 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSS-----LKNAC 113 L D+ + V HN ++ + I T + ++ G S + Sbjct: 67 LVDKGI--VGHNLKYDLKFLYRY---GIEPYAVFDTMIASQLLGELDRHSLQKVAMHYLG 121 Query: 114 LALNFSEHLTKM---EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ S ++ K + + + + E T Sbjct: 122 EVLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDKLNSTAHQEE--TLLKTRT 179 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +F P++ E + G +D+ + L + L++ +++ Sbjct: 180 SRVFGLKNPVAIIEMAFVQEVAKLELNGIGVDIKELEDLIREYKK---NLNKKVMEFMMH 236 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 L L G+DL + T ILS + + ++ R+ Sbjct: 237 YRIDPLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIHHKPVQMILEIRMTKKLL 296 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 KL+ + V DG + + GA TGR S QN+PR Sbjct: 297 --DKLDEIRSFV-KDGSVYPEFKQIGA-ITGRMSSLNPNVQNIPRD-------------- 338 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R A GK LV++D + IE R+ + G++ IKAF G+D Sbjct: 339 ----------------LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKD 382 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ T + + +SKE+R + K + L Y A+ A G+D Sbjct: 383 LHRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGID--------- 433 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 L + ++ + + + + + Sbjct: 434 ------------------------------LSVDDAQKIRDRFFEYFRSFKEWHERVKRE 463 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + G R Sbjct: 464 LKQLGGSRGYTLLGRSYVAHTF-------------------------------------- 485 Query: 588 MRERTYGGKLTENIVQAISRDILCEG--M----KNATKNGYDIVLTVHDEIVSETPDTPY 641 +Q D+L M K +V VHDEIV E Sbjct: 486 -------PDAVNYPIQGTGADLLKLSVLMFDAEIKREKIEAHVVNLVHDEIVVECQMEKA 538 Query: 642 FSVGTLCSL-MTKNPSWAKG-LPLKAEGYEAKRYRK 675 V L M +P++ E +R+ K Sbjct: 539 QLVRDLLERAMKHAGRVVLKQVPVEVESTINERWLK 574 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 98/649 (15%), Positives = 175/649 (26%), Gaps = 139/649 (21%) Query: 43 KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 A ++ D V HN+ +F + G I T++ A Sbjct: 384 WFEPSALDEADERAWAAWIADPDRPKVLHNAKGAMRVFPEH-GWSIAGVTM-DTALAAYL 441 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L+ +G +A + ++ + Sbjct: 442 VKPGRRSFALDALSVEYLHRELAPAAAADG--QLAFGADDTAEAEALMTQARAVLDLGDA 499 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F E K D REL E L + G D D + +++ A + Sbjct: 500 FAE--KLDEVGARELLH------QVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQ 551 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN------ITQ 272 + ++ + L+ F + ++ + + Sbjct: 552 QAVKEAHASVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHE 610 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L ++ +R + + + L + + +DGR+ T A TGR S QN+P Sbjct: 611 LPVIMLRHREQARLRST--VEGLIKTIGADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP- 666 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAW 391 +R + G + L+ AD + IE RV+A Sbjct: 667 -----------------------VRTDEGRAIRHGFVVGEGFEALMTADYSQIELRVMAH 703 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + I+AF +GED++ T ++ F V E R K M L Sbjct: 704 LSEDAGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGL------------ 751 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 GL SQ + + + Sbjct: 752 --AYGLSAFGLSQQLNIDPG------------------------------EARGLMDTYF 779 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + GV + + + + RR Sbjct: 780 ERFGGVRDYLRRVVDEARATGYTETML--------------------------GRRRYLP 813 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 D+ D A ++ +Q + DI+ M N + ++ Sbjct: 814 DLNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLNVDRALTEAGLASRML 864 Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L VHDEIV E V TL M+ PL + + Sbjct: 865 LQVHDEIVLELAPGERDRVETLVRAQMSAAADLRA--PLDVSVGVGQNW 911 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 93/635 (14%), Positives = 167/635 (26%), Gaps = 141/635 (22%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107 A + +L D V HN+ +F + + T++ A Sbjct: 169 DEADERAWVAWLADAERPKVLHNAKGAMRVFAEH-DWSVAGVSM-DTALAAYLVKPGRRS 226 Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 L L +G +A ++ + F Sbjct: 227 FDLDALSLEYLGRELAPPAAADG--QLAFGADDGAEAEALMVQARAVLDLGSAFEGRLAE 284 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 A L D E L + G D + ++++ A ++ ++ Sbjct: 285 VGAADL--------LRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAH 336 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLI 278 + L+ LF G+ L + + ++ ++ Sbjct: 337 GAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTD--NELPVIM 393 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 394 LRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP------- 444 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDW 397 +R + G + L+ AD + IE RV+A ++ + Sbjct: 445 -----------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAG 487 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF +GED++ T ++ F V E R K M L GL Sbjct: 488 LIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGL--------------AYGL 533 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 SQ + + + A+ + GV Sbjct: 534 SAFGLSQQLNIEAG------------------------------EARALMDAYFERFGGV 563 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + RR D+ D Sbjct: 564 RDYLRRAVDEARATGYTATLF--------------------------GRRRYLPDLNSDN 597 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG--YDIVLTVHDE 631 A ++ +Q + DI+ M G ++L VHDE Sbjct: 598 RQRREAAERM---------ALNAPIQGTAADIVKIAMLKVDGALRDAGLASRMLLQVHDE 648 Query: 632 IVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 IV E + M+ +PL Sbjct: 649 IVLEVAPGERGVAEEIVRREMSDAVD--LRVPLGV 681 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 87/629 (13%), Positives = 152/629 (24%), Gaps = 127/629 (20%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 L YL+ H++ + GI + T++ A LK Sbjct: 369 KALADYLQSTQ-PKFLHDAKTTYHMLAG-RGITLGGIA-HDTALAAYLLNPGQRTYDLKT 425 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + D T N + + Sbjct: 426 TYQRHLHRTLEI-------------TETGQLSLLDITNTNTLITAAAAILELAATLPTKL 472 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L D E L + + G +D+ + + + + + + Sbjct: 473 ATINELELYLDLELPLTTILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDP 532 Query: 232 IRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN--ITQLAKDLILNRLASSG 286 L++ LF G+ T + + +L Sbjct: 533 NLLLTSPKQLQVVLFETLGLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQK 592 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L L +AV DGR+ T Q + TGR S QN+P Sbjct: 593 MKTT-LEGLIKAVGDDGRIHTTFQQTM-TSTGRLSSTDPNLQNIP--------------- 635 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 A +RS L+ AD + IE RV+A ++ + I A+ NG Sbjct: 636 ---------IRTPAGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNG 686 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 ED++ AK F+ P V+ E R K + L Y L++ Sbjct: 687 EDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLVYG-----LSAFGLSQQLNIPAGEAK 741 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + F + + + + Q + L R + + Sbjct: 742 QIMENYFHRFGGVKHYLDTVVTQARKDGYTATLFDR---------RRYLPELTSTNRATR 792 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E ++ + + N Sbjct: 793 ENAERAALNAPIQGTAADII---------------------KIAMLRIHHELKKTN---- 827 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 ++L VHDE+V E +V Sbjct: 828 ----------------------------------AKSRVLLQVHDELVVEIAPGELTTVK 853 Query: 646 TLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L M + +PL+ + Sbjct: 854 KLIEHEMDNAIT--LKVPLEVSTGHGPNW 880 >gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] Length = 875 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 94/640 (14%), Positives = 173/640 (27%), Gaps = 148/640 (23%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 T + + L D+++ + ++ L K K ++ Sbjct: 368 TNNNWFSDIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDIKAIEDLELMQYALSAGL 424 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S KN K + I S T + Sbjct: 425 SQKNL----------FKEVLKETWIENIIIESAKIVINFITLYKQTI--------WELKD 466 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T L+ + + + + + G +D + + +L E KL+E+I L Sbjct: 467 NKTFRLYSNI------DLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFAL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281 + + L LF + S T IL + DL+L Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRW 579 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++L + + + T ++ TGR S QN+P Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP---------- 629 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + +R IA G KL+ AD + IE R+L+ IA D +A Sbjct: 630 --------------IRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F N +DI+ T + FN +++ E R K + G+ Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + + K + A+++GV + Sbjct: 719 ---------------------------AFGLAKQLNVTHGEASAYIKKYFAEYKGVQEYM 751 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + ++ R+ + Sbjct: 752 EQTKAFA--------------------------SSNGYVTNCFGRKCFVPLIHDKK---- 781 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635 R +Q + DI+ M N K +VL +HDE++ E Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 P + + +M S +P+ E + Sbjct: 835 APIDEVEIITPIIKKIMEN--STNMDVPIITEIRAGNNWM 872 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 88/503 (17%), Positives = 151/503 (30%), Gaps = 118/503 (23%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + ++ G +DLD + ++ + +L I++ + R + L Sbjct: 488 DLEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHAGEPF-NIRSSQQL 546 Query: 242 RMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 LF I + + T +L + IL L L + Sbjct: 547 AAILFDKLDIKEGNKTATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRSTYLEPLPK 606 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V D RL A+ TGR S QN+P Sbjct: 607 LVGEDSRLHTHFNQL-ATATGRLSSSQPNLQNIP------------------------IR 641 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G +R+C IA G L AD + IE RVLA +G+ I AF N EDI+ T A Sbjct: 642 GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLT 701 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + V ++R K + G+ Sbjct: 702 DKQPQDVLADERRNAKTINF--------------GLIYGMGP------------------ 729 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + A + + + + + K + + + + Sbjct: 730 ------------QKLARELDITVNQAKEFIERYFDKLATLKAYYDTIVKDAESHG----- 772 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + + RR + ++ + SQ R+ Sbjct: 773 ---------------------FVTTLAGRRRLLPELHSRNT---QLVSQARRQA------ 802 Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 ++Q + DI+ M A K G ++L VHDE++ E P+ L ++ Sbjct: 803 VNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRPAGERLKTI 862 Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673 M A +PLK + + + Sbjct: 863 MQSVADLA--VPLKVDLGLGRTW 883 >gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica] gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] Length = 875 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 91/633 (14%), Positives = 170/633 (26%), Gaps = 148/633 (23%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K ++ S Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLS------ 425 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 F + ++ + A+ Y + E Sbjct: 426 ----------------QKNLFKEVLKETWIENIIIASAKIVINFIALYKQTIWELKDNKT 469 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 RL D + + + G +D + + +L E KL+E+I L+ + Sbjct: 470 FRLYSNID--LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-N 526 Query: 235 SRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSA 288 L LF + S T IL + DL+L + Sbjct: 527 IGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLK 586 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++L + + + T ++ TGR S QN+P Sbjct: 587 NTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP----------------- 629 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI Sbjct: 630 -------IRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDI 682 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T + FN +++ E R K + G+ Sbjct: 683 HTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---------- 718 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 A + + K + A+++GV + + Sbjct: 719 --------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA 758 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + R+ + Sbjct: 759 SSNGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAE 787 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642 R +Q + DI+ M N K +VL +HDE++ E P Sbjct: 788 RAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVE 841 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + +M + + A +P+ E + Sbjct: 842 IITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 109/666 (16%), Positives = 186/666 (27%), Gaps = 129/666 (19%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERIL 79 E A D D + Q A ++L LRD V H Sbjct: 401 PGRIGEDAAALAI---VRDGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFKAALKA 457 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFC 136 G+++ TS+ L E T + + L F Sbjct: 458 LS-ARGLELEGV-VDDTSISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFD 515 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + A V A + E ++ +A EL L E + + + Sbjct: 516 GDDSAAAGELVHAAAVVHALSRYFEAELKERKAE-ELLSTL------ELPVSQVLADMEL 568 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ID+ + + +A+ E + + L+ LF + Sbjct: 569 AGIAIDMQRMDEQLADLAKVIDNAQELAFAAIGHEV-NLGSPKQLQTVLFDELQLPKTKK 627 Query: 257 SEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + +LK++L + L L+ +R +S L +L ++V+ DGR+ T Sbjct: 628 IKSGYTTDAASLKNLLEKTGHEFLV-QLMAHRESSKLRQ--MLESLKKSVAEDGRIHTTY 684 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A TGR S QN+P VR + Sbjct: 685 AQNVA-ATGRISSNNPNLQNIP------------------------IRSEEGRRVRGIFV 719 Query: 370 ASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 S G L+ AD + IE R++A ++G+ I+A+ +GED++ + F+ P D+V+ Sbjct: 720 VSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVTSAM 779 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R+ K M L Y + L++ F+ + + + DQ Sbjct: 780 RSKVKAMSYGLAYG-----LTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQ 834 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + G R + + L E + + Sbjct: 835 ARIDGFTATIEGR---------RRYLPDLTSTDRQLRENAERIALNSPIQGSAADII--- 882 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + V + Q Sbjct: 883 ------------------KRAMLGVHAELKA-----------------------QG---- 897 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 L M L VHDE+V E +V L M +PL + Sbjct: 898 -LKSRML----------LQVHDELVLEVAAGEREAVEKLVTEQMGSAAD--LSVPLDVQI 944 Query: 668 YEAKRY 673 + Sbjct: 945 GVGPSW 950 >gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] Length = 950 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 96/622 (15%), Positives = 192/622 (30%), Gaps = 144/622 (23%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA---LNFSEHLTKMEEGKALIA 133 +++GI + T + SL+ A L+F E ++ +G + Sbjct: 442 LLESVGITL-PTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGT--LD 498 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + D + + L + L+ E + + Sbjct: 499 LDDMDGSSNTQADELQRHAAIVDMLA---NVLADLLDQRAQFGLLKSI--ELPVSKVLYG 553 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ++D+ + ++++ A + ++ ++I + G + + L+ LF G+ Sbjct: 554 MEHAGAQVDMIRLTEMRDQFAADARQA-QEIAWESAGERVNLQSPKQLQKILFEDMGLKP 612 Query: 254 VDMSEG----TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS 301 ++ T + L L D L+ +R + I + TL +A + Sbjct: 613 TKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNP 670 Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T + A TGR S QN+P A Sbjct: 671 RDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAA 705 Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +RS + G + L+ +D + +E R++A ++G++ I+AF +G D + + + Sbjct: 706 GREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGI 765 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+++++ +QR+ K M L Y T Sbjct: 766 PVEEITSDQRSHVKAMSYGLAY-----GLSTYGL-------------------------- 794 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 A + K+ E ++ + A V + + L Sbjct: 795 -------------AQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIY- 840 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR + +K + A + Sbjct: 841 -------------------------GRRRYFPGLKSPNRAVRDAAERA---------ALN 866 Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 +Q + DI+ M A+ I+L +HDE+V E L M Sbjct: 867 APIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAME 926 Query: 653 KNPSWAKGLPLKAEGYEAKRYR 674 + A +PL A ++ Sbjct: 927 HAVTMA--VPLDASTGIGSDWQ 946 >gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] Length = 879 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 79/597 (13%), Positives = 155/597 (25%), Gaps = 129/597 (21%) Query: 91 KRWICTSVLARTNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + S K L + GK + + Sbjct: 394 GDVFDIKIANYLIDVTSKSEIDKIVFNYLGEIISSNEEIYGKGAKRSLPTQEVLNS---- 449 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A + E L E + + + G + + Sbjct: 450 --YIAKIAASILEVKPLMIKSLEEENMLDLYKNI--EIKVARVLANMEFEGIHVSKKALD 505 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ + K L+ I L + L + LF G+ +V ++ T + Sbjct: 506 EMSHEFDERIKVLEGSIYTLAGSEF-NIASPKQLGVVLFEDLGLPVVKKTKTGYSTAVEV 564 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L LI+ + L + ++ +G++ + ++TGR S Sbjct: 565 LEQLQYKHDIIPLIMEYRTLTKLNSTYAKGLVKDITREGKIHTRYEQT-LTQTGRLSSVN 623 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P +R I SN + ++ D + Sbjct: 624 PNLQNIP------------------------TRIEEGKKIRKAFIPASNDRVILSIDYSQ 659 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA IA + I AF + DI+ T + P+D+V+ R K + + Y Sbjct: 660 IELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYG- 718 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + Sbjct: 719 ----ISDFGLSNNL---------------------------------------GITRKRA 735 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + +GV + D+ + + Sbjct: 736 KEFIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYN------------------------ 771 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----- 618 RR ++ + +Q + DI+ M +A Sbjct: 772 --RRRSLPEINAKNKII---------ANLNARIAMNTPIQGTAADIIKIAMISAYNYIEE 820 Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ + + ++M + + + LKAE + Sbjct: 821 SKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAAN--LDVKLKAEASSGPSW 875 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 112/707 (15%), Positives = 208/707 (29%), Gaps = 189/707 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET P + L A +D PV + D +L+ + Sbjct: 28 KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 77 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----SLKNAC-LA 115 + + V N+ F+ + +DI T + ++ +LK Sbjct: 78 LSTSGVKVFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN + T + + Y RD E L K Sbjct: 135 LNEDLDKEE----------------------QTSNWQGELTESQILYAARDAEILLRLRK 172 Query: 176 RLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +IP + E + RG +D +L E ERK +++ Sbjct: 173 VMIPQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYT 232 Query: 227 LTDGIIR-------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + + + L GI + ++ L + + Sbjct: 233 YVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEH-GIPVAATAKQDL-----YPHRRHP 286 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L+ ++ S L + + GRL A +GR S Q +PR Sbjct: 287 LVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPR 345 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 R+C A G+KL++AD + IE RV A I Sbjct: 346 DS----------------------------EFRACFAAPPGRKLILADYSQIELRVAAQI 377 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I A+ GED+++ T + + PI+++S ++R K + L + GA + A Sbjct: 378 SGDTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYA 437 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ ++ + Sbjct: 438 QQN--------------------------------------YGVEMSLEQATEFRERFFK 459 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + G+ + + + + R+ VY + Sbjct: 460 AYTGIHRWHQSIKAHLPKEG----------------------------RTLAGRKFVYYE 491 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNATKN---GYDIVLTV 628 G Y NT VQ + DI+ + + + IV V Sbjct: 492 KAGLPGYYNT------------------PVQGTAADIVKKALGLLIERLAGTDTYIVGIV 533 Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 HDEI+ E+P ++ L S M + + +P K + ++ + Sbjct: 534 HDEILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 580 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 182/633 (28%), Gaps = 141/633 (22%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LAL 116 L D H++ + F LG + T + A L + L Sbjct: 385 LADPQQPKALHDAKGPLLGFL-ELGWTLAGLT-SDTQLSAYLARPDQRSYDLADLTVRYL 442 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + G D A ++A + D E ++ Sbjct: 443 RRELRNEEADNG-------QLSFDDVEGGPAADATMLRARAIADLADTLDAELAKQAGTA 495 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L+ D E L + + G +D + KL+E A + ++ I + Sbjct: 496 LLA--DVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKEI-NLG 552 Query: 237 QTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF + ++ +L+++ + LA L+ +R A+ Sbjct: 553 SPKQLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAY-LLAHRDATRLRQT 611 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + +S D R+ T A TGR S QN+P Sbjct: 612 --VEGLLKTISPRDARIHTTFNQTIA-ATGRLSSTDPNLQNIP----------------- 651 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + G + L+ AD + IE R++A ++ ++ I AF +GED Sbjct: 652 -------IRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSGED 704 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + T A+ F+ +V++E RA K M L GL Sbjct: 705 FHSVTAARVFSVQPGEVTQEMRAKIKAMNYGL--------------AYGLS--------- 741 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + K+ + + + + GV + + Sbjct: 742 ---------------------AYGLSQQLKIGVDEAKGLMDEYFERFGGVRDYLRSIVIE 780 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + RR D+ D ++ Sbjct: 781 AGKSGYTETIL--------------------------GRRRYLPDLTSDNRQRREMAERM 814 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY 641 +Q + D++ M ++L VHDE+V E Sbjct: 815 ---------ALNAPIQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGER 865 Query: 642 FSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++ L M A +PL + + Sbjct: 866 EALEELVRRDMGSAVEMA--VPLDVSVGVGRTW 896 >gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] Length = 642 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 97/724 (13%), Positives = 192/724 (26%), Gaps = 161/724 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQS------- 51 + DIE ++ A I + + + ++ Sbjct: 23 KVVAFDIECAPKNEWFRLNEKKAALDPNKGHIVGISLSVKEGTGIYIPLRHRNGKNVEDV 82 Query: 52 -AMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 M + L + +E+++ VAHN FE + GI I + T G + Sbjct: 83 HRMIAWLKGFVFHNESLIKVAHNISFESSFLCEY-GIVIK-EPVFDTM-----LGSMLTF 135 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K+ + K+ K + H + + Y D + Sbjct: 136 KSFGEFRTLRDSGLKLLA-KEIFNEDLPSFSHVVNGTHFDNLHSEHKETVR-YACADSDY 193 Query: 170 TRELFKRLIPLSDGERDLWLLDQ------------TINDRGYRIDLDLVLKLQELIAQER 217 L+ + + L + G ++ +L+ + +E Sbjct: 194 ALRLYNWCMEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEEL 253 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMY---LFLITGID----LVDMSEGTLKSILSHSNI 270 + +I+ + + + + + LF + L Sbjct: 254 EFCKREILSFANREV-NLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEE 312 Query: 271 --------TQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 + I S + L + + G++ GA TGR+S Sbjct: 313 WCIRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGAE-TGRFS 371 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QNLPR++ +R I S + D Sbjct: 372 SRNPNLQNLPRKDNDHLG------------------------IRKLFIPSPNHVFLDFDF 407 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKV 434 + IE RV A+ + I AF DI+ T + +N P+++ + K++R I K Sbjct: 408 SQIELRVGAYYCKDRKMINAFMKDFDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKN 467 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + K + + G Sbjct: 468 CNFGVFFGLFPKGLQKTLMYKG-------------------------------------- 489 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + CE + + + + + KD + A Sbjct: 490 GINISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRT---------------- 533 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 RR D+K + + +Q + DI+ M Sbjct: 534 ----------GRRRYLKDMK---------SKDWNKRAVSERCALNTPIQGTAADIIKIAM 574 Query: 615 KNA----TKNGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGY 668 + GY +L +HDE++ E + ++ + M + P +P+K E Sbjct: 575 ARILRELPERGYIKPLLQIHDELLFEVREDKVNEAIVFIKDCMERTPFKDFNIPIKVEYS 634 Query: 669 EAKR 672 Sbjct: 635 VGYN 638 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 91/648 (14%), Positives = 172/648 (26%), Gaps = 151/648 (23%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107 +L D V H++ +F + G+ + T++ A Sbjct: 389 DEDDERAFADWLGDPERPKVMHDAKGLMRVFGEH-GMTVAGVAM-DTALGAYLVKPGRRT 446 Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +L L + +S A+ + + Sbjct: 447 FALDALSLEYLGRE----------------LVPAQESDGQLAFGADDETQARTLMVEART 490 Query: 166 DVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 ++ L RL + +D E L + G D + + +++ A ++ Sbjct: 491 ILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQ 550 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI---TQL 273 + + L+ LF + ++ T L+ +L Sbjct: 551 AVREAHAAVGHEF-NLGSPKQLQEVLFGGLNLPKTRKTKTGYTTDADSLAWLAGQTEHEL 609 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ +R + + + L ++++ DGR+ T A TGR S QN+P Sbjct: 610 PVLMLRHREQAKLRST--VEGLIKSIAPDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 664 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392 +R + G + L+ AD + IE RV+A + Sbjct: 665 ----------------------VRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHL 702 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ I AF +GED++ T FN V E R K M + Sbjct: 703 SEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAM--------------SYG 748 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GL + + + + + Sbjct: 749 LAYGLS------------------------------AFGLSQQLGIEAGEARALMDTYFE 778 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + GV + E + RR D Sbjct: 779 RFGGVRDYLHRVVEEARATGYTATML--------------------------GRRRYLPD 812 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVL 626 + D A ++ +Q + DI+ M + ++L Sbjct: 813 LNSDNRQRREAAERM---------ALNAPIQGTAADIVKIAMLGVDRALREAELTSRMLL 863 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 VHDEIV E V + M PL + + Sbjct: 864 QVHDEIVLELAPGEREPVEEILRREMAAAAQLRA--PLTVSVGVGRDW 909 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 95/693 (13%), Positives = 197/693 (28%), Gaps = 147/693 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57 L ID E + K + Y + A I + +D+ + + ++ Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDLYF-PLNHGGLLAKNIDK 396 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112 + ++ + + +++N LGI ++ + + + Sbjct: 397 NLVVNFISELDIKFISYNFK----SLLN-LGIKFK-SMYMDMMIAYHLISSQTKIDPIIP 450 Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 K GK I + D Y + + A Y + + + Sbjct: 451 ITEYSTLEPKDFKTAFGK--INVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYK 508 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + + +G ID+ + +E ++++ I + Sbjct: 509 ILM-------ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287 + L LF+ + ++ T +L L+L+ + Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIP---------------- 663 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 664 --------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 IYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 ++ T + FN + VS+EQR I Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIA---------------------------------- 741 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + A + K+ K + ++ V +++ E Sbjct: 742 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIE 791 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ S + T SQ Sbjct: 792 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 822 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641 R ++Q + ++L + M K ++L VHDE++ E + Sbjct: 823 AERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSV 876 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 877 EKYSEILADIMKNTVQL-EDVKLNININIGKNW 908 >gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1] gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1] Length = 949 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 96/622 (15%), Positives = 191/622 (30%), Gaps = 144/622 (23%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA---LNFSEHLTKMEEGKALIA 133 +++GI + T + SL+ A L+F E ++ +G + Sbjct: 441 LLESVGITL-PTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGT--LD 497 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + D + + L + L+ E + + Sbjct: 498 LDDMDGSSNTQADELQRHAAIVDMLA---NVLADLLDQRAQFGLLKSI--ELPVSKVLYG 552 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ++D+ + ++++ A + ++ ++I + G + + L+ LF G+ Sbjct: 553 MEHAGAQVDMIRLTEMRDQFAADARQA-QEIAWESAGERVNLQSPKQLQKILFEDMGLKP 611 Query: 254 VDMSEG----TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS 301 ++ T + L L D L+ +R + I + TL +A + Sbjct: 612 TKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNP 669 Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T + A TGR S QN+P A Sbjct: 670 RDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAA 704 Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +RS + G + L+ +D + +E R++A ++G++ I+AF +G D + + + Sbjct: 705 GREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGI 764 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+++++ +QR+ K M L Y T Sbjct: 765 PVEEITSDQRSHVKAMSYGLAY-----GLSTYGL-------------------------- 793 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 A + K+ E ++ + A V + + L Sbjct: 794 -------------AQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIY- 839 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR + +K + A + Sbjct: 840 -------------------------GRRRYFPGLKSPNRAVRDAAERA---------ALN 865 Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 +Q + DI+ M A I+L +HDE+V E L M Sbjct: 866 APIQGSAADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAME 925 Query: 653 KNPSWAKGLPLKAEGYEAKRYR 674 + A +PL A ++ Sbjct: 926 HAVTMA--VPLDASTGIGSDWQ 945 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 102/661 (15%), Positives = 192/661 (29%), Gaps = 143/661 (21%) Query: 39 DEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D+ + D E S + L + L + + V H++ R + G + + T Sbjct: 362 DKEALVIDPVELSPKQEEALGEVLATASSLIV-HDAKGARHALS-SRGWTLGGVEF-DTM 418 Query: 98 VLARTNGL---PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + A L++ L + + EG + A F G + + P Sbjct: 419 LAAYLAHPDQRSHKLEDVLSRVLGV---VIEEGEGDSE-ALFDLGDMGAGPSAAQVRAGK 474 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 A L L L+D E L +L + D G D ++ L + + Sbjct: 475 LAAYLHPLASTLRSRLEESSEAAL--LTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDEL 532 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILS 266 + E + + L+ LF G+ + L + + Sbjct: 533 GKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTNADALADLHA 591 Query: 267 HS-----NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 + L+ +R +++LS V+SDGR+ T A+ TGR + Sbjct: 592 KTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ-VAAATGRLA 648 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P +R +A G + L+ AD Sbjct: 649 SSDPNLQNIP------------------------ARSADGMRIRGAFVAGEGFESLMSAD 684 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G++ I+AF +GED++ T + F TP+ +VS E+R+ K L Sbjct: 685 YSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLA 744 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y + L + Sbjct: 745 YG-----LSSYGLAAQL---------------------------------------GIPV 760 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 ++ + + V + L Sbjct: 761 PEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMF---------------------- 798 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 RR D++ + +Q + DI+ M N Sbjct: 799 ----GRRRYLPDLRSSNRQRREMAERA---------ALNAPIQGSAADIVKIAMINVVDA 845 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +++ +HDE++ E +V + M +PL + + Sbjct: 846 LSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDRMATPVE--LSVPLDVAVGVGRSW 903 Query: 674 R 674 + Sbjct: 904 Q 904 >gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] Length = 886 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 83/652 (12%), Positives = 172/652 (26%), Gaps = 119/652 (18%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L + D L R + L + L D V N+ + + + LG+D+ Sbjct: 339 LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR-LGVDLAGV 397 Query: 92 RWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + + + GK + Sbjct: 398 DF-DLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEVFFTHLA 456 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +A ++ + Y + L++ D ER L + + G +D + Sbjct: 457 KKARAIRDLKE-PLYQQLTDNEQLPLYE------DIERPLSAVLAHMEITGIHVDAATLK 509 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 ++ + + +L++ I + + L + LF + ++ ++ T + Sbjct: 510 EMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDV 568 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L IL S + L + + D + T + TGR S Sbjct: 569 LEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVD 628 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R S G K+ +D + Sbjct: 629 PNLQNIP------------------------VRLEEGRQIRRAFTPSAPGWKIFSSDYSQ 664 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA + G+ F G+DI+ T + F+ D+V+ R K + + Y Sbjct: 665 VELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYG 724 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + S F+++ E + + + + + L Sbjct: 725 -----ISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR- 778 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + I + Sbjct: 779 --------RRYLPEIHAKSFTQRSFAERMAMNTPIQG---------------SAADIIKI 815 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 R +G + + + Sbjct: 816 AMIRMEKALKERGLRARM---------------------------------LLQIHD--- 839 Query: 623 DIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E P + + S+M +PLK E + Sbjct: 840 --------ELVFEAPEEEIAILEELVPSIMDSAVK--LDVPLKVESKSGATW 881 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 99/652 (15%), Positives = 177/652 (27%), Gaps = 157/652 (24%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSK 91 YA D V L L L + + V F+ L +D I Sbjct: 326 YAVQDGQVFL-------PGTDRLAALLDSDADLWV-----FDAKPL-YHLALDRGGIGKA 372 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + A +S K L + + + Sbjct: 373 IHFDGKLAAYLLNPSAS----------------GYAVKNLAGEYDVPAAFTCEAAPDAGV 416 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 ++L + E L + + G+ +D D + + Sbjct: 417 LAALLDKLAAALDESG------QRKLHD--EMELPLARVLADMERIGFAVDADGIRAFGD 468 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHS 268 + E + + I + + L LF G+ + T + L Sbjct: 469 SLRGELDGILQSIYEEVGYEF-NVNSPKQLGEALFDKLGLPPRKKTSRGYSTDAATLESL 527 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D IL + + L A ++DGR+ T A RTGR S Q Sbjct: 528 RPYSPVIDQILKYRTYAKLLSTYVEGLLSAQAADGRVHSTFIQTEA-RTGRISSTEPNLQ 586 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R +A GK+LV AD + IE R+ Sbjct: 587 NIP------------------------IRTELGSRLRGFFVAGAGKELVDADYSQIELRI 622 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I G++ +AF +G DI+ +T AK ++ P +V+ + R+ K + + Sbjct: 623 LAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFGIM-------- 674 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + + K Sbjct: 675 ------------------------------------YGKGAFSLSKDLDVSVKEADAFLK 698 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + A V +D + RR Sbjct: 699 TYLATFPKVDGYMQDCIAHAKEKGY--------------------------VETLFGRRR 732 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622 ++ + + ++ R +Q + DI+ M + K Sbjct: 733 ALPELASSNFQVRASGERMAR---------NTPIQGTAADIIKLAMVHVWQRLRDEKLEA 783 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P+ V + M + + +PL + K + Sbjct: 784 RLLLQVHDELIVEAPEAEVEEVKRVLREEMEQVVQY--SVPLTTDVGTGKTW 833 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 183/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+D+ L+ + + +E + I + L+ LF + + Sbjct: 507 GIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 183/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+D+ L+ + + +E + I + L+ LF + + Sbjct: 507 GIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 100/644 (15%), Positives = 172/644 (26%), Gaps = 129/644 (20%) Query: 44 LWD---RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D T ++ L +L D H+ + + G + T++ A Sbjct: 378 WIDPTQLTAGDSVA--LGDWLADPDRAKAGHDLKGPMLALAEA-GFTLAGVT-SDTALAA 433 Query: 101 RTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 L + L E + S D A+ ++A Sbjct: 434 YLALPGQRSFDLADLALRYLHRELK-SDAPSNGQLTLDG-----SGEADEAEADAIRARA 487 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 D + R RL+ + E L + T+ G D D +L+LQ+ E Sbjct: 488 ALELADALDGDLERRSAARLLR--EMELPLVTILATMERAGIAADEDHLLELQKHYGGEV 545 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTLKSILSHSN---IT 271 + G + L+ LF + T L+ Sbjct: 546 SDVAAQAH-GIVGRTFNLGSPKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDH 604 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L+ +R + +++L + GR+ T A TGR S QN+P Sbjct: 605 PLIPVLLHHRDVARLK--TVVDSLIPMIDDAGRIHTTFNQMIA-ATGRLSSTDPNLQNIP 661 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 +R + G L+ AD + IE R++A Sbjct: 662 ------------------------IRTPQGRQIRQAFVVGQGYETLLTADYSQIEMRLMA 697 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G+ I+AFA+GED++ A+AF P+ +V E R K M L Y Sbjct: 698 HLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLAYG-----LSA 752 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + + F + + DQ + ++G Sbjct: 753 FGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGR--------- 803 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + + + +L R L Sbjct: 804 RRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKI------------AMLGVGRALR- 850 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 SRD+ + D Sbjct: 851 -----------------------------------SRDLSSRLLLQVH-----------D 864 Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E V L M +PL+ + + Sbjct: 865 ELVLEIAPGERAEVEALVRAEMGSAYE--MSVPLEVSVGAGRTW 906 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 88/658 (13%), Positives = 182/658 (27%), Gaps = 135/658 (20%) Query: 32 LCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + L ++ + + ++ R+ + +N G++ Sbjct: 366 GFAVSSLKDDFYLPLGHTPLFHKNLDFNKIKEFFRNSDSKFITYNFK----PLLN-EGVE 420 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 I + + A + + E + G + K ++P Sbjct: 421 IKNMDV-DLMI-AYHLISSQTKEGV-------EIPLEQLSGIDIAPYSEKFGKEAPGNLS 471 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDG-ERDLWLLDQTINDRGYRIDLDL 205 T + + A E+ + L+ + + E L + + +G +ID Sbjct: 472 TEEYGKFLTERSKGIMETYGIAMEEIKGKDLLEVLEKTEMPLIKVLSAMERKGIKIDPVY 531 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 K ++ + L + I ++ + L LF +D V ++ T + Sbjct: 532 FAKYEKELEILLSDLQKKIFEIAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGLSTDE 590 Query: 263 SILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 +L IL + ++ L + V S RL T G + TGR S Sbjct: 591 EVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLVDSKDRLHTTFNQIG-TTTGRLS 649 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R IA +G L+ D Sbjct: 650 SSNPNLQNIP------------------------VKTDEGMKIRQGFIADSGNVLMGIDY 685 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++ ++ I A+ N ED++ T K F Sbjct: 686 SQIELRVLAELSKDENLIAAYKNNEDLHRVTAKKIF------------------------ 721 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G + + + + + + + + Sbjct: 722 ------------ELGEGEEVSREQRII-------AKTINFSIIYGKTAFGLSKELGIPQK 762 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + ++ V + + + RR+ + K Sbjct: 763 EATDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEGIISKNKNIKN----- 817 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619 Q R +++Q + +IL + M K Sbjct: 818 ------------------------QAERMA------VNSVIQGTAAEILKKVMIEIFKVI 847 Query: 620 ---NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + T+ +M + + + L K + Sbjct: 848 DGKEDISLLLQVHDELIFEIKEEKVEEYRTIIENIMRNSVKF-NDVVLDINTNIGKNW 904 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 95/693 (13%), Positives = 196/693 (28%), Gaps = 147/693 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57 L ID E K + Y + A I + +D + + ++ Sbjct: 340 LIIDSE--DALNEQKEYLSNYKKIASIYYESLGIILSTED-KNLYFPLNHGGLLAKNIDK 396 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112 + ++ + + +++N LGI ++ + + + Sbjct: 397 NLVVNFISELDIKFISYNFK----SLLN-LGIKFK-SMYMDMMIAYHLISSQTKIDPIIP 450 Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 K GK I + D Y + + A Y + + + Sbjct: 451 ITEYSTLEPKDFKTAFGK--INVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYK 508 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + + +G ID+ + +E ++++ I + Sbjct: 509 ILM-------ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287 + L LF+ + ++ T +L L+L+ + Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIP---------------- 663 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 664 --------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 IYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 ++ T + FN + VS+EQR I Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIA---------------------------------- 741 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + A + K+ K + ++ V +++ E Sbjct: 742 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIE 791 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ S + T SQ Sbjct: 792 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 822 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641 R ++Q + ++L + M K ++L VHDE++ E ++ Sbjct: 823 AERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEESSV 876 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 877 EKYSRILADIMKNTVQL-EDVKLNININIGKNW 908 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 102/632 (16%), Positives = 179/632 (28%), Gaps = 149/632 (23%) Query: 55 SDLLQYLRDETVMC-VAHNSLFERILF-KKTLGIDIPSKRWI-CTSVLARTNGLPSSLKN 111 DLL+ L ++ V V F+ + + + + A +S Sbjct: 362 EDLLRLLDNKDVTLDV-----FDSAPLYARAMAAGGWGSSIVWDGKLAAYLLDASAS--- 413 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 N SE + T A L + K E T Sbjct: 414 ---KYNLSELIISYRA----------------DAAFTCEKWPDAGALADLFAKMKTEITA 454 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L D E L + + G +D + + K + E + + I T Sbjct: 455 LEEDSLYN--DIEFPLAQVLADMTRIGILVDKEGIEKFGVKMRSELEDVLTRIHMETGSA 512 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ + T L L +D IL A Sbjct: 513 SFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLEALRDYPLVED-ILQYRAYQKLN 571 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + ++ DGR+ A RTGR S QN+P Sbjct: 572 STYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP----------------- 613 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ +A G LV AD + IE R+LA + G++ +AF GEDI Sbjct: 614 -------IRTELGSQLRAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQAFLTGEDI 666 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + +T AK + P+++V+ R+ Sbjct: 667 HRSTAAKIYGLPLEQVTPRLRSSA------------------------------------ 690 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 +A + + + + + K + A V Sbjct: 691 --------KAINFGIMYGKGAYSLSKDIGVSVKEADAFLKNYLATFPKVSGYMDKTISDA 742 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + RR ++ + + + ++ Sbjct: 743 RSCGY--------------------------VSTLFGRRRSLPELASNNHNIRASGERMA 776 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 R +Q + D++ M K ++LTVHDE++ E P+ Sbjct: 777 R---------NTPIQGTAADVIKLAMVRVWRRLRDEKMESRLILTVHDELIVEAPEAEAA 827 Query: 643 SVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + M ++A +PL E ++ K + Sbjct: 828 KAAAILQEEMEGCVNYA--VPLSTEVHQGKNW 857 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 95/693 (13%), Positives = 197/693 (28%), Gaps = 147/693 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57 L ID E + K + Y + A I + +D+ + + ++ Sbjct: 340 LIIDSE--NGLNEQKEYLSNYKKIASIYYESLGIILSTEDKDLYF-PLNHGGLLAKNIDK 396 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112 + ++ + + +++N LGI ++ + + + Sbjct: 397 NLVVNFISELDIKFISYNFK----SLLN-LGIKFK-SMYMDMMIAYHLISSQTKIDPIIP 450 Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 K GK I + D Y + + A Y + + + Sbjct: 451 ITEYSTLEPKDFKTAFGK--INVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYK 508 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + E L + + +G ID+ + +E ++++ I + Sbjct: 509 ILM-------ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287 + L LF+ + ++ T +L L+L+ + Sbjct: 562 F-NINSPKQLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIP---------------- 663 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 664 --------VKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 IYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 ++ T + FN + VS+EQR I Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIA---------------------------------- 741 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + A + K+ K + ++ V +++ E Sbjct: 742 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTSFEREVIE 791 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ S + T SQ Sbjct: 792 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 822 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641 R ++Q + ++L + M K ++L VHDE++ E + Sbjct: 823 AERMA------VNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEENSV 876 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 877 EKYSEILADIMKNTVQL-EDVKLNININIGKNW 908 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 98/645 (15%), Positives = 171/645 (26%), Gaps = 127/645 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A D + D + + L +L DE + H + +F G + Sbjct: 403 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 459 Query: 92 RW-ICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A + L G + G + Sbjct: 460 GIEHDTAIAAYLLRPGQRTYELADVYQRHLQRQLNPSNNGSNQLTLLDAGDSQVLVDEAV 519 Query: 149 RANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +L GE + E EL++ L E L + + G +D+ + Sbjct: 520 A-----ILELAGELTSQLQEINGFELYRDL------EIPLLSILARMEATGIAVDVATLE 568 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLK 262 + E + + +E +L + L+ LF G+ ++ + Sbjct: 569 EQLETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAE 628 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + D +L L L +V SDGR+ T AS TGR S Sbjct: 629 IEALAAKNPHPFLDHLLAHRQYQKMKTT-LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSS 686 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P A +RS + G L+ AD Sbjct: 687 TDPNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADY 722 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RV+A ++ + I+A+ GED++ +K F+ PID V+ E R K M L Y Sbjct: 723 SQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 782 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + S FE + + + + +Q + + L G Sbjct: 783 G-----LSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRYLAEVVEQARKSGYTETLFGR 837 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 R + + E Sbjct: 838 ---------RRYLPELNSDNRVARENAERAALNAPIQGTAADII---------------- 872 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 ++ V + + + Sbjct: 873 -----KVAMIRVDRELRATGVKSRV---------------------------LLQVHD-- 898 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 E+V E V + M + +PL+ Sbjct: 899 ---------ELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEV 932 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 89/639 (13%), Positives = 165/639 (25%), Gaps = 143/639 (22%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + L ++L + H+S + G+ + TS+ A Sbjct: 348 DVAPKDE--KALAEWLANPQATKWLHDSKKAYHTLQNQ-GLTLDGVE-HDTSLAAYLLRP 403 Query: 106 ---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 SL + G L + +A + Sbjct: 404 DVRTLSLADVVQRH----------VGHELSEGATGPERAQAVAELVKALTPEIEAAGQAE 453 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 D+E L + + G +D + +L + + Sbjct: 454 LYFDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARLNEEIA 497 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG------TLKSILSHSNITQLAKD 276 +L + L+ LF + ++ L+ + Sbjct: 498 AARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGH 557 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L+ +R + ++ L EAV DGR+ T GA TGR S QN+P Sbjct: 558 LMAHREYQKMKST--IDGLIEAVGDDGRIHTTFNQKGA-ATGRLSSSDPNLQNIP----- 609 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395 A +R+ G L+ AD + IE RV+A ++ + Sbjct: 610 -------------------VRTDAGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSED 650 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I+A+A+GED++ ++ F+ P+D+V+ E R K + L Y Sbjct: 651 AGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYG-----LSAFGLSQ 705 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L + + + FE + + + + + E + L G R Sbjct: 706 QLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGR---------RRYLP 756 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + E +L V Sbjct: 757 ELNSSNRVARENAERAALNAPIQGTAADII---------------------KLAMLRVDR 795 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + A+ + DE+V E Sbjct: 796 EITRQQLASRV---------------------------LLQVH-----------DELVVE 817 Query: 636 TPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + L M +PL + Sbjct: 818 VAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDNW 854 >gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5] gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5] Length = 875 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 93/633 (14%), Positives = 173/633 (27%), Gaps = 148/633 (23%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K ++ S KN Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQKNLFK 431 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + K + +I K I+ ++ + F Y D Sbjct: 432 E------VLKEPWIENIIIESAKIVINFIALYKQTIWELKDNKTFRLYSNID-------- 477 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + + + G +D + + +L E KL+E+I L+ + Sbjct: 478 ----------LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-N 526 Query: 235 SRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSA 288 L LF + S T IL + DL+L + Sbjct: 527 IGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLK 586 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++L + + + T ++ TGR S QN+P Sbjct: 587 NTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQNVP----------------- 629 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI Sbjct: 630 -------IRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDI 682 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T + FN +++ E R K + G+ Sbjct: 683 HTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---------- 718 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 A + + K + A+++GV + + Sbjct: 719 --------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQKYMEQTKAFA 758 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + R+ + Sbjct: 759 SSNGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAE 787 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642 R +Q + DI+ M N K +VL +HDE++ E P Sbjct: 788 RAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVE 841 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + +M + + A +P+ E + Sbjct: 842 IITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 84/635 (13%), Positives = 178/635 (28%), Gaps = 149/635 (23%) Query: 50 QSAMPSDLLQYLRDETVMCVA--HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + + + L V + H +L+ G+ + ++ S+ A Sbjct: 401 DKNVLAKWHELLGSPRVFKIMADHKTLY--SALAN-EGVRLDGLKY-DLSLAAYLMNPTR 456 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S A L+ F + ++ N + + G Sbjct: 457 SSYQAAELLSGQAD-----------ELFFSAAREAGLLAHEFENSRKKLEELGLSSLL-- 503 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L ++ + +G +D +++ ++ + ++ ++EDI ++ Sbjct: 504 -------------HELEEPLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQI 550 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 G+ + L LF + + T L + IL Sbjct: 551 A-GVSFNINSPQQLGKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEKILEFRHL 609 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + DG++ T Q + TGR S QN+P Sbjct: 610 VKLNSTYVKGLLGQL-RDGKVHTTFQQMV-TATGRLSSTEPNLQNIP------------- 654 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G +L AD + IE RVLA + + ++F Sbjct: 655 -----------IRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQ 703 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 GED++ T ++ F P+++V+ + R K + GL Sbjct: 704 TGEDVHARTASEVFGVPLEQVTPDMRRKAKAVNF--------------GLMYGLTDF--- 746 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A ++ + + + ++ GV + D Sbjct: 747 ---------------------------GLARDIRIPRKEAKFYIERYFQRYSGVKKYLND 779 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + ++ R + ++ N Sbjct: 780 SVVNAMETGETRTLLNRLRQT------------------------------PELNHQNRT 809 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT 639 Q + + +Q + DI+ M + +++L VHDE++ E Sbjct: 810 VRQFGQ-----RIAMNSPIQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSAR 864 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M +PL+ + + Sbjct: 865 ALPEVAQIVKTEMESA--LLLTVPLQVDCKTGVNW 897 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 87/662 (13%), Positives = 188/662 (28%), Gaps = 141/662 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85 + +++ + + ++ + ++ + + +++N LG Sbjct: 369 LGIIISTEEKDLYF-PLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142 I+ ++ + + + K GK I + D Sbjct: 423 INFK-SMYMDMMIAYHLISSQTKIDPIIPIVEYSKLEPKDFKTAFGK--INVELITAQDF 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y + + A Y + + + L + E L + + +G ID Sbjct: 480 SKYLSAISIGILAIYDELNYLLKKEDLYKILM-------ENEMPLIPVLSLMERKGIEID 532 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + + +E K+++ I + + L LF+ + ++ Sbjct: 533 VQYFKNYSLELDKELLKIEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 591 Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L L+L+ + ++TL V + R+ T G + TG Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TATG 650 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R +A GK L+ Sbjct: 651 RLSSSDPNLQNIP------------------------VKTDDGIKIREGFVAGAGKVLMS 686 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437 D + +E RVL ++ ++ I+A+ +D++ T + FN + VS+EQR I Sbjct: 687 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIA----- 741 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + + + A + K Sbjct: 742 ---------------------------------------KIINFSIIYGKTPFGLAKELK 762 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + ++ V +++ E Sbjct: 763 IPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLF------------------- 803 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R+ S + T SQ R ++Q + ++L + M Sbjct: 804 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 847 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E ++ + +M + + L K Sbjct: 848 YDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNININIGK 906 Query: 672 RY 673 + Sbjct: 907 NW 908 >gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG'] Length = 872 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 178/656 (27%), Gaps = 172/656 (26%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK------TLGIDIPSK 91 D + +++ A+ + + RDE F++ + LGI Sbjct: 363 DGDQAIFHPFSDEEAVFKKMSAW-RDEGKAVWC----FDQTRLYRECPRFFALGIPF--- 414 Query: 92 RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 ++ A L+N +E Sbjct: 415 -VFDATIAAYLLDPGHRDYLLENLAARYFLTEIS-------------------------- 447 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + + D L + E L + + G RID + Sbjct: 448 --DRPRLVRNILSRLWDDAVKE----GLLELVQSIEIPLGRILYQMEVLGVRIDRQALES 501 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 +E I ++L+E+I +L + L+ G+ T + L Sbjct: 502 ARESIEALSRELEEEIYRLAGSRFTIL-SPKQVGEILYGKLGLPTARKGKTGYSTDEETL 560 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + + IL ++ ++ + + GRL G + TGR S Sbjct: 561 TRLSALHPLPEKILAYRQMKKLLSTYVDPIARGIDAQGRLHGQFNQTV-TATGRLSSSNP 619 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P A +R C IA + L+ AD + IE Sbjct: 620 NLQNIP------------------------MRSPAGREIRKCFIAGENRVLLSADYSQIE 655 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA + + + F EDI+ T F D V+ E R K + Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFG---DPVTPETRRKAKTIN--------- 703 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ + + + Sbjct: 704 -----FGILYGMS------------------------------AFSLSQDLGVESQEAQA 728 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + V L+ + E + + Sbjct: 729 FIDRYFGAFPKVGPLFDSILEEAKKTGEVRTIL--------------------------G 762 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGK-LTENIVQAISRDILCEGMKN---ATK-- 619 R+ ++ R R YG + ++Q + D++ + M + K Sbjct: 763 RKRRIPELFASDR----------RSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812 Query: 620 -NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 D+++ VHDE++ E + T+ SLM +PL + + K + Sbjct: 813 PEIGDLLVQVHDELLFEVREDNLDEASGTIRSLMEGA--LRLKVPLVVQVGQGKNW 866 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 98/645 (15%), Positives = 171/645 (26%), Gaps = 127/645 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A D + D + + L +L DE + H + +F G + Sbjct: 362 IAIVDTDRRAVVADLADITPEAEKALAGWLADEASPKLLHGAK---AVFHMLAGRGFELR 418 Query: 92 RW-ICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T++ A + L G + G + Sbjct: 419 GIEHDTAIAAYLLRPGQRTYELADVYQRHLQRQLNPSNNGSNQLTLLDAGDSQVLVDEAV 478 Query: 149 RANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +L GE + E EL++ L E L + + G +D+ + Sbjct: 479 A-----ILELAGELTSQLQEINGFELYRDL------EIPLLSILARMEATGIAVDVATLE 527 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLK 262 + E + + +E +L + L+ LF G+ ++ + Sbjct: 528 EQLETFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAE 587 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + D +L L L +V SDGR+ T AS TGR S Sbjct: 588 IEALAAKNPHPFLDHLLAHRQYQKMKTT-LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSS 645 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P A +RS + G L+ AD Sbjct: 646 TDPNLQNIP------------------------VRTEAGRKIRSGFVVGEGYETLLTADY 681 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RV+A ++ + I+A+ GED++ +K F+ PID V+ E R K M L Y Sbjct: 682 SQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 741 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L + S FE + + + + +Q + + L G Sbjct: 742 G-----LSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRYLAEVVEQARKSGYTETLFGR 796 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 R + + E Sbjct: 797 ---------RRYLPELNSDNRVARENAERAALNAPIQGTAADII---------------- 831 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 ++ V + + + Sbjct: 832 -----KVAMIRVDRELRATGVKSRV---------------------------LLQVHD-- 857 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 E+V E V + M + +PL+ Sbjct: 858 ---------ELVVEIAPGELEQVQGILEREMDNAIT--LRVPLEV 891 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 90/638 (14%), Positives = 172/638 (26%), Gaps = 151/638 (23%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC-LA 115 +L D + H++ +F + G+ + T++ A +L Sbjct: 403 WLGDPERPKIMHDAKGLMRVFGEH-GMSVAGVSM-DTALGAYLVKPGRRTFALGALSLEY 460 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + +S A+ + + ++ L Sbjct: 461 LGRE----------------LVPAQESDGQLAFGADDESQARTLMVEARTILDLGTALTA 504 Query: 176 RLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 RL + +D E L + G + D + +++ A ++ + Sbjct: 505 RLPEVGAEGLLTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVG 564 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLA 283 + L+ LF + ++ T L+ +L ++ +R Sbjct: 565 HEF-NLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQ 623 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + + L ++++ DGR+ T A TGR S QN+P Sbjct: 624 AKLRST--VEGLIKSIAPDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP------------ 668 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G + L+ AD + IE RV+A ++ ++ I AF Sbjct: 669 ------------VRTDEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAF 716 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +GED++ T F V E R K M + GL Sbjct: 717 TSGEDLHRTVAGYVFGVEPAAVDAEMRRKIKAM--------------SYGLAYGLS---- 758 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + + + + GV Sbjct: 759 --------------------------AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLH 792 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + E + RR D+ D Sbjct: 793 RVVEEARATGYTATML--------------------------GRRRYLPDLNSDNRQRRE 826 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG------YDIVLTVHDEIVSET 636 A ++ +Q + DI+ M N + ++L VHDEIV E Sbjct: 827 AAERM---------ALNAPIQGTAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLEL 877 Query: 637 PDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M PL + + Sbjct: 878 APGERAPVEEILRREMAAAAELRA--PLTVSVGVGRDW 913 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 93/630 (14%), Positives = 173/630 (27%), Gaps = 128/630 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L +L DE+ H++ + G+++ T++ A Sbjct: 382 LRAWLGDESRPKAVHDAKGPMLAL-WAQGMELRGLTC-DTALAAYLAMP----------- 428 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 L + L + + G E L Sbjct: 429 GQRTFLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALAVRELADALEAF 488 Query: 177 LIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L P + + E L + + G D D L+ K+ E G Sbjct: 489 LEPRGGTHLMREVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAHAAV-G 547 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASS 285 + L+ LF+ + ++ + ++L + Sbjct: 548 EQFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLRHRDQA 607 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + L + ++ DGR+ T A TGR S QN+P Sbjct: 608 KLKVT-VEGLVKEIADDGRIHTTFNQIVA-ATGRLSSEKPNLQNIP-------------- 651 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +R + G L+ AD + IE R++A ++G++ I AF + Sbjct: 652 ----------IRTVEGRRIRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFES 701 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D + TT A+ F+ ++V+ E RA K M L Y L++ Sbjct: 702 GHDFHKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYG-----LSDFGLAGQLNIPVQEA 756 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 FE++ + Q + + ++G R + + Sbjct: 757 KALKEEYFEEFGGVRDFLNAIVAQARQDGYTETIMGR---------RRYLPDLNSDNRQR 807 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + LN Sbjct: 808 REMAERM-----------------------------------------------ALNAPI 820 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 K+ VQ + + E G ++L VHDE+V E ++ Sbjct: 821 QG---SAADIIKVAMLNVQ-SA---VKEA-----ALGSRMLLQVHDELVFEVAPGELETL 868 Query: 645 GTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L M ++ +PL+ + + Sbjct: 869 RELVTDRMNAA--YSLRVPLEVSVGVGRTW 896 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 84/499 (16%), Positives = 154/499 (30%), Gaps = 120/499 (24%) Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + RG RID ++ E +L I + + R + L L Sbjct: 467 PLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQAGEEF-NIRSSQQLAEVL 525 Query: 246 FLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 F G+ + T S+L +L L + + Sbjct: 526 FSRLGLACKQKTPGGAQSTSSSVLEGLAAEHPIVADVLEFRMYEKLRSTYLEPMPQLADK 585 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 +GR+ T A+ TGR S QN+P G Sbjct: 586 NGRIHTTFNQL-ATATGRLSSSNPNLQNIP------------------------IRGALG 620 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +RSC +AS G +LV AD + IE RVLA ++G+ +AFA G+DI+ T F+T Sbjct: 621 PRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILFDTT- 679 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 +VS ++R K + G+ Sbjct: 680 -EVSADERRKAKTINF--------------GLLYGMGP---------------------- 702 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + + + + +K V + ++++ G + Sbjct: 703 --------QKLGRELGISLKEAKEFIAVYFSKLSRVREFYEEIEAGAKSLGYVTTL---- 750 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 + RR + ++ + + ++ + Sbjct: 751 ----------------------AGRRRMLPEINSRNTNMAQQARRM---------AINTV 779 Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 VQ + DI+ + M K G ++L +HDE++ E P V + +M Sbjct: 780 VQGSAADIIKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAGIMASV 839 Query: 655 PSWAKGLPLKAEGYEAKRY 673 ++ +PL + + Sbjct: 840 --YSLSVPLVVDWGVGDDW 856 >gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010] gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010] Length = 944 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 188/643 (29%), Gaps = 144/643 (22%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---- 112 L ++L V H + + +LG+D+ + W T + + Sbjct: 417 LQRFLDGHADRIVVHGYKEQSHILA-SLGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 474 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L L D H+ + + ++ RE Sbjct: 475 SHFLQLQLDNADDVAQGQLDLSGDVDPADQ----RKDLLHMAMVRALADMLAAKID-ERE 529 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 F+ L + E + + + G +D + ++++ A + + ++ G Sbjct: 530 QFRLLQSI---ELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDA-QETAWQFAGSR 585 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ--------LAKDLILN 280 + + L+ LF G+ ++ T S L + L+ + Sbjct: 586 VNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRH 645 Query: 281 RLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R + I + +L +AV+ D GR+ T + A TGR S QN+P Sbjct: 646 RETNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP-------- 694 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398 +RS + G + L+ +D + +E R++A ++G+D Sbjct: 695 ----------------NRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 738 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G D + + + P+D ++ +QR K M L Y T Sbjct: 739 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY-----GLSTYGL----- 788 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + K+ + +K + A V Sbjct: 789 ----------------------------------AQQLKISPGEADRLKSQYFATFGKVH 814 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + L G RR + ++ Sbjct: 815 EYLESLVAGAREKGYTETMF--------------------------GRRRYFPGLQSPNR 848 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEI 632 + A + +Q + DI+ M K I+L +HDE+ Sbjct: 849 NIRDAAERG---------ALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDEL 899 Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 V E V L M A +PL ++ Sbjct: 900 VVEIAPGEVEQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 940 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 85/632 (13%), Positives = 154/632 (24%), Gaps = 147/632 (23%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---P 106 A P L + +AH + + ++P+ T + A Sbjct: 388 GDAGPEVLAAAI--GERPALAH----DAKALR-----EVPATLAHDTLIAAYLLEPARRS 436 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + A A + + Sbjct: 437 YPLDELTEERGIGTDV-------------------------EDAAAADAILVHALTAAQR 471 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + L D E L + + + G R+D +L+ ++ + E L+ +I + Sbjct: 472 PQLEERELLPLFD--DVELPLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWE 529 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLA 283 LT L LF G+ T +L + I Sbjct: 530 LTGEEFM-IGSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIERWRE 588 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + A L+ L +S D RL T A TGR S QN+P Sbjct: 589 LTKLASTYLDALPLLISPEDHRLHTTFNQVTA-ATGRLSSTNPNLQNIP----------- 636 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+C +A G L+ AD + +E RVLA IAGE+ + F Sbjct: 637 -------------IRTPLGREIRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIF 683 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T A +++ R+ K++ + Y L + + Sbjct: 684 RRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVYG-----LSAFGLADRLQIPRE 738 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + ++ +Q + L+G R + + Sbjct: 739 EAQEFIDRYLDGFPAVQAFIRTTIEQATDQGYVTTLMGR---------RRQIPELRARNY 789 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + + +L + Sbjct: 790 QMRQLGERLAVNTVIQGTAADVI---------------------KLAMVNADRALHASGL 828 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 T + ++ E P Sbjct: 829 RTRLI---------------------------LQIHDE-----------LLFEGPAEEAE 850 Query: 643 SVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 L M PL + + Sbjct: 851 QARDLVVPQMVDALELDP--PLVVDAGIGPNW 880 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 98/670 (14%), Positives = 188/670 (28%), Gaps = 161/670 (24%) Query: 39 DEPVKLWDRT-----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 D + D ++ A+ L L + H++ R + G + + Sbjct: 343 DNEALVIDPVELSPQQEEALGEVLATALS-----LIVHDAKGARHALS-SRGWTLGGVEF 396 Query: 94 ICTSVLARTNGL---PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPY 145 T + A L++ L + + EEG + + Sbjct: 397 -DTMLAAYLAHPDQRSHKLEDVLSRVLGV---VIEEEEGDSEALFDLGDMGAGPSAAQVR 452 Query: 146 DCTRANHVQAWQ-LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 A H+ + EA L+D E L +L + D G D Sbjct: 453 AGKLAAHLHPLASTLRSRLEESSEAAL--------LTDMEMPLSVLLGQMEDIGIAADTS 504 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---L 261 ++ L + + + E + + L+ LF G+ ++ Sbjct: 505 VLDGLSDELGKAVDAAREGAWAAAGREV-NLSSPKQLQELLFDHFGLPKTKKTKTGYTTN 563 Query: 262 KSILSHSN---------ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 L+ + L+ +R +++LS V+SDGR+ T Sbjct: 564 AEALADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ--MVDSLSATVASDGRIHTTFSQ- 620 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A+ TGR + QN+P +R +A Sbjct: 621 VAAATGRLASSDPNLQNIP------------------------ARSADGMRIRGAFVAGE 656 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + L+ AD + IE R++A ++G++ I+AF +GED++ T + F TP+ +VS E+R+ Sbjct: 657 GFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSR 716 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K L Y + L Sbjct: 717 IKATSYGLAYG-----LSSYGLAAQL---------------------------------- 737 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + ++ + + V + L Sbjct: 738 -----GIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMF------------- 779 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 RR D++ + +Q + DI+ Sbjct: 780 -------------GRRRYLPDLRSSNRQRREMAERA---------ALNAPIQGSAADIVK 817 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664 M N +++ +HDE++ E +V + M +PL Sbjct: 818 IAMINVVDALSEAGLKSRLLVQIHDELLVEVAPGEAAAVEAIVRDKMATPVE--LSVPLD 875 Query: 665 AEGYEAKRYR 674 + ++ Sbjct: 876 VAVGVGRSWQ 885 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 96/654 (14%), Positives = 178/654 (27%), Gaps = 137/654 (20%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67 T + G+ + I L A ++ PV ++D + ++ + L + L++E V+ Sbjct: 1310 THCGLDIETTGLEVF--DEKIRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + N F+ + T + ++ ++ + + K Sbjct: 1368 KIIQNGKFDAKFLMHN---NFQVDNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLN 1420 Query: 128 GK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + + + L Y K E +E + ++D E Sbjct: 1421 VTLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKEN---METVNDIENK 1477 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + G +DL+ + K I E + + + L Sbjct: 1478 CILPICDMELNGITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQVLKALQ 1537 Query: 247 LITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGR 304 D+ + E T S L + + L R L + ++ + Sbjct: 1538 NNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRR-LYKLYSAFYLKLPQHINKKTNK 1596 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T + +GR+S Q +PRQ + Sbjct: 1597 IHTTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNI 1627 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R I ++AD IE ++ A I +D +KA+ N D++ T + PI V Sbjct: 1628 REIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKPIADV 1687 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE R I K + L Y K A+ Sbjct: 1688 NKEDRHIAKAINFGLIYGMNYVNLKNYANTY----------------------------- 1718 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + C ++ ++G+ + + + S + R Sbjct: 1719 ---------YNLNMNLDQCLYFYNSFFEHYKGIYRWHNQI----KQIRGLEYSTLSNRKV 1765 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 P K VQ Sbjct: 1766 IFPYFSFT-------------------------------------------KALNYPVQG 1782 Query: 605 ISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTK 653 DIL + KN I+L VHDEI+ E ++ L M Sbjct: 1783 TCADILKLSLVELYKNLKPIHGKIILCVHDEIIIEVDKKYQEDALKILVESMEN 1836 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 116/693 (16%), Positives = 205/693 (29%), Gaps = 179/693 (25%) Query: 1 MS---KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 M F D ET S I L A++ V +++ L Sbjct: 1 MKNNEVFFFDTETDSLD----------FRTGKIKLIAFSKGLNEVVT-----TTSVDERL 45 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL 116 L D+ ++ V HN+ F+ F ++ G + + CT ++A+ G SLK Sbjct: 46 KSILNDKNIIKVFHNAKFDVGFF-QSKGYRVN--NYHCTLLMAQVLGEEKLSLKALAK-- 100 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 S + Q +Y +DVE TR L+ + Sbjct: 101 ----------------KYLDVDMDKSMQHSDNWQETEIT-QEHIDYAVKDVEHTRALYYK 143 Query: 177 LIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L+ L + ER + G ++ D + + +L+ I L Sbjct: 144 LLDLLVENNLLTVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKDL 203 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L + GI L S + +S+ ++ K + R + Sbjct: 204 LNRKELNLNSPKQLVEAIVE-YGIKLHSTS---DDELAKYSDEHEVIKLIRKYRRLQAKI 259 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L + + +DGR+R + G SR+GR S Q +P Sbjct: 260 KT-YGEKLKKFIDNDGRIRAHWRLIG-SRSGRMSCNNPPLQAMPGNS------------- 304 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R +A G KL+ +D + IE RVLA I+ ++ I F NG D Sbjct: 305 -----------------REFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNGID 347 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +++ T + F PID++SKE+R + K + + Y L Sbjct: 348 LHLGTASLIFKKPIDEISKEERQVAKSLNFGIVYG-----ITAYGIQKNLRKSGVDT--- 399 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 E + + + V +L L + Sbjct: 400 -------------------------------SLEEAEKYRIEFLNVYPKVKELQDSLLKA 428 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 +I RR Sbjct: 429 ------------------------------DYIKTLGGRR-------------------W 439 Query: 588 MRERTYGGKLTENIVQAISRDILCEGM-KNATKNG--YDIVLTVHDEIVSETPDTPYFSV 644 + +Q + + L E + + + +V +HDEI+ E P+ Sbjct: 440 QGGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEVPEDEAEEA 499 Query: 645 GTLCS-LMTKNPS-WAKGLPLKAEGYEAKRYRK 675 + M + K +P+ + + + K Sbjct: 500 KNILESCMVEGMKTIVKDIPIIVDSSVSNNWCK 532 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 96/693 (13%), Positives = 199/693 (28%), Gaps = 147/693 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVI----TLCAYAWDDEPVKLWDRTEQSAMPSDL-- 57 L ID E + K + Y + A I + +D+ + + ++ Sbjct: 339 LIIDNE--NSLNEQKEYLTNYKKIASIYYEGLGIILSTEDKD-FYFPLNHGGLLAKNIDR 395 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112 ++++ + + +++N LGI ++ + + + Sbjct: 396 NLVVKFISELDIKFISYNFK----ALLN-LGISFK-SMYMDMMIAYHLISSQTKIDPIIP 449 Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 K GK D ++ + + Y + + + Sbjct: 450 ITEYSKLEPKDFKTAFGK-------VNVELITAQDFSKYLSDISIGILAIYDELNYLLKK 502 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E ++ L + E L + + +G ID+ + +E K+++ I + Sbjct: 503 EDLYKI--LMENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEE 560 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGS 287 + L LF+ + ++ T +L L+L+ + Sbjct: 561 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 619 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ + G + TGR S QN+P Sbjct: 620 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIP---------------- 662 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R IA GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 663 --------VKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 714 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 ++ T + FN P + VS+EQR I Sbjct: 715 LHDLTARRIFNLPDSETVSREQRTIA---------------------------------- 740 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + A + K+ K + ++ V K++ E Sbjct: 741 ----------KIINFSIIYGKTPFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIE 790 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 R+ S + T SQ Sbjct: 791 FGEEHGYVKTLF--------------------------GRKRYISGIDSKN---KTIKSQ 821 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPY 641 R ++Q + ++L + M K ++L VHDE++ E Sbjct: 822 AERMA------VNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQVHDELIFEVEKNSV 875 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + + L K + Sbjct: 876 EKYSGILADIMKNTVQL-EDVKLNININIGKNW 907 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 87/662 (13%), Positives = 187/662 (28%), Gaps = 141/662 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85 + +++ + + ++ + ++ + + +++N LG Sbjct: 369 LGIIISTEEKDLYF-PLNHGGLLAKNIDKNLVVSFISELDIKFISYNFK----ALLN-LG 422 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142 I+ ++ + + + K GK I + D Sbjct: 423 INFK-SMYMDMMIAYHLISSQTKIDPIIPIVEYSKLEPKDFKTAFGK--INVELITAQDF 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y + + A Y + + + L E L + + +G ID Sbjct: 480 SKYLSAISIGILAIYDELNYLLKKEDLYKILM-------KNEMPLIPVLSLMERKGIEID 532 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + + +E K+++ I + + L LF+ + ++ Sbjct: 533 VQYFKNYSLELDKELLKIEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 591 Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L L+L+ + ++TL V + R+ T G + TG Sbjct: 592 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIG-TATG 650 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R +A GK L+ Sbjct: 651 RLSSSDPNLQNIP------------------------VKTDDGIKIREGFVAGAGKVLMS 686 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMEL 437 D + +E RVL ++ ++ I+A+ +D++ T + FN + VS+EQR I Sbjct: 687 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIA----- 741 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + + + A + K Sbjct: 742 ---------------------------------------KIINFSIIYGKTPFGLAKELK 762 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + ++ V +++ E Sbjct: 763 IPVKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLF------------------- 803 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R+ S + T SQ R ++Q + ++L + M Sbjct: 804 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 847 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E ++ + +M + + L K Sbjct: 848 YDVLKDKEEIALLLQVHDELIFEVEESSVEKYSEILADIMKNTVQL-EDVKLNININIGK 906 Query: 672 RY 673 + Sbjct: 907 NW 908 >gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] Length = 943 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 188/643 (29%), Gaps = 144/643 (22%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---- 112 L ++L V H + + +LG+D+ + W T + + Sbjct: 416 LQRFLDGHADRIVVHGYKEQSHILA-SLGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAA 473 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L L D H+ + + ++ RE Sbjct: 474 SHFLQLQLDNADDVAQGQLDLSGDVDPADQ----RKDLLHMAMVRALADMLAAKID-ERE 528 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 F+ L + E + + + G +D + ++++ A + + ++ G Sbjct: 529 QFRLLQSI---ELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDA-QETAWQFAGSR 584 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ--------LAKDLILN 280 + + L+ LF G+ ++ T S L + L+ + Sbjct: 585 VNLQSPKQLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRH 644 Query: 281 RLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R + I + +L +AV+ D GR+ T + A TGR S QN+P Sbjct: 645 RETNKLKQI--VQSLIDAVNPDDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP-------- 693 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398 +RS + G + L+ +D + +E R++A ++G+D Sbjct: 694 ----------------NRNAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDAL 737 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 I+AF +G D + + + P+D ++ +QR K M L Y T Sbjct: 738 IEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY-----GLSTYGL----- 787 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + K+ + +K + A V Sbjct: 788 ----------------------------------AQQLKISPGEADRLKSQYFATFGKVH 813 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + L G RR + ++ Sbjct: 814 EYLESLVAGAREKGYTETMF--------------------------GRRRYFPGLQSPNR 847 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEI 632 + A + +Q + DI+ M K I+L +HDE+ Sbjct: 848 NIRDAAERG---------ALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDEL 898 Query: 633 VSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 V E V L M A +PL ++ Sbjct: 899 VVEIAPGEAEQVTGLVRDAMEHAVDLA--VPLDVSTGIGSDWQ 939 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 90/653 (13%), Positives = 166/653 (25%), Gaps = 126/653 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A D +D TE +L D V HN+ + + G + Sbjct: 364 VALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVLAEH-GWSVAGV 422 Query: 92 RWICTSVLARTNGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 T++ A L L+ +G +A ++ Sbjct: 423 GM-DTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAAADG--QLAFGADEGAEAEVLMV 479 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + + F DV A L D E L + G D + + Sbjct: 480 QARAILDLGETFESRLA-DVGAADLLR-------DMELPTSALLARMERHGIAADREHLQ 531 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++++ A ++ ++ + L+ LF + ++ + Sbjct: 532 AMEQMFAGAVQQAVKEAHAAAGREF-NLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADA 590 Query: 268 SNI-----TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 ++L + + + L + +++DGR+ T A TGR S Sbjct: 591 LAWLAAQTDNELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSS 648 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADL 381 QN+P +R + G + L+ AD Sbjct: 649 TDPNLQNIP------------------------VRTDEGRAIRRGFVVGEGFESLMTADY 684 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RV+A ++ + +AF +GED++ T A+ F+ V E R K M L Y Sbjct: 685 SQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAY 744 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 L+++ + FE + + + D+ L G Sbjct: 745 G-----LSAFGLSQQLNIEAAEARGLMDAYFERFGGVRDYLRRVVDEARATGYTATLFGR 799 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 R + + E + Sbjct: 800 ---------RRYLPDLNSDNRQRREAAERMALNAPIQGTAADIV---------------- 834 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + LN + D+ + Sbjct: 835 --------------KIAMLNVDKALRE------------------ADLKSRMLLQVHD-- 860 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 EIV E + L M +PL + Sbjct: 861 ---------EIVLEIAPGERAAAEELVRREMANAVQ--LRVPLGVSVGAGPDW 902 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 90/632 (14%), Positives = 178/632 (28%), Gaps = 146/632 (23%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNA 112 + + L + +A NS +F+ + + ++ +++A + Sbjct: 354 EFKKQLL-KAKAIIAENSK---EIFESDFPYE--NLKFYDVTLIAYLLDPTHVTYNRSYV 407 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 ++ A L Y + Sbjct: 408 GELFKVPSIYIDENASFEQNG------------------NMIADFLLALYTSSYELLVKN 449 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L + E+ L + + G ID + K+++ + ++ +KL +I + Sbjct: 450 DIEKLFK--EVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEKEEKLLLEIYREAGEEF 507 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ T +L I IL + Sbjct: 508 -NVNSPKQLSHILFDKMGMPTGKKTKTGYSTAADVLESLAIDYPFVKNILEYRTLAKLIS 566 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L+ + V + + T + TGR S QN+P Sbjct: 567 TYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIP------------------ 608 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +RS + G + +D + +E RVLA ++G++ I+AF N EDI Sbjct: 609 ------VRTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDI 662 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T ++ F P ++V+ EQR+ K + + Y L Sbjct: 663 HRRTASEVFGVPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLSKQL----------- 706 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + K + ++ G+ + K +TE Sbjct: 707 ----------------------------GISRKKADEYIKTYLKRYPGIHEFMKKMTEEA 738 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + R D+ + + Sbjct: 739 RKTGKVKTLF--------------------------GRYRDLPDINSKNFQRRSFAERT- 771 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +Q + DI+ M + I+L VHDE+V E Sbjct: 772 --------AMNTPIQGSAADIMKIAMIQVYEKMKKGKYKSRILLQVHDELVVEAVKEEVE 823 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M S + L A+ + K + Sbjct: 824 EISKLLKETMESVVS--LKVKLVADVHVGKNW 853 >gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058] Length = 880 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 89/659 (13%), Positives = 178/659 (27%), Gaps = 147/659 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L + + + + FE + +++ + + Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREA 761 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 + + + R + ++ + SA + V Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + R L + K Sbjct: 813 INLD-------------RALTEKNFKS--------------------------------- 826 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + IVL E P+ +V L M A +PL A+ Sbjct: 827 ---RMLLQVHDE---IVL--------EVPNDELTAVRKLVKETMEAAIELA--VPLVAD 869 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 101/646 (15%), Positives = 183/646 (28%), Gaps = 128/646 (19%) Query: 42 VKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D T A + L +LRD V H G+++ TS+ Sbjct: 358 AVYLDLTALDADTENALATWLRDPESPKVLHGFKAALKALT-ARGLELEGV-VDDTSISG 415 Query: 101 RTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 L LN + G+ ++ + + A Sbjct: 416 YLIQPDRRTYELAELAQHHLNVGMPAATAKAGQLELSFDGNDTAAAEALVQAAAVVSALS 475 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + F K LS E + + + G IDLD + + +A+ Sbjct: 476 RFFETELKERRAEEL--------LSTLELPVSRVLADMELAGIGIDLDRMDEQLADLARV 527 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSN 269 + E + + L+ LF + + +LK++L + Sbjct: 528 IDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTG 586 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L L+ +R A+ + +L ++V+ DGR+ T A TGR S QN Sbjct: 587 HEFLV-QLMAHREAAKLRQ--MIESLKKSVAEDGRIHTTYAQNVA-ATGRISSNNPNLQN 642 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARV 388 +P VR + S+G L+ AD + IE R+ Sbjct: 643 IP------------------------IRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRI 678 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A ++G+ I+A+ +GED++ + F+ P D+V+ R+ K M L Y Sbjct: 679 MAHLSGDAGLIQAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYG-----L 733 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + L++ F+ + + + DQ + G Sbjct: 734 TSFGLSKQLEISVDEARTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGR------- 786 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R + + L E + + + Sbjct: 787 --RRYLPDLTSTDRQLRENAERIALNSPIQGSAADII---------------------KR 823 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 V + Q + ++L V Sbjct: 824 AMLGVHAELQA-----------------------QGL---------------KSRMLLQV 845 Query: 629 HDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 HDE+V E +V L M +PL+ + + Sbjct: 846 HDELVLEVAPGERAAVEALVTEQMAAAAD--LSVPLEVQIGVGPSW 889 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 188/662 (28%), Gaps = 141/662 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLG 85 + +D+ + + ++ ++++ + + +++N LG Sbjct: 368 LGIILSTEDKD-FYFPLNHGGLLAKNIDRNLVVKFISELDIKFISYNFK----ALLN-LG 421 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIARFCKGSIDS 142 I ++ + + + K GK Sbjct: 422 ISFK-SMYMDMMIAYHLISSQTKIDPIIPITEYSKLEPKDFKTAFGK-------VNVELI 473 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 D ++ + + Y + + +E ++ L + E L + + +G ID Sbjct: 474 TAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKI--LMENEMPLIPVLSLMERKGIEID 531 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 + + +E K+++ I + + L LF+ + ++ Sbjct: 532 VQYFKNYSLELEKELLKVEKAIYEEAGEEF-NINSPKQLGDILFVKLNLPSGKKTKTGYS 590 Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L L+L+ + ++TL V + R+ + G + TG Sbjct: 591 TDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTSFNQIG-TATG 649 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R IA GK L+ Sbjct: 650 RLSSSEPNLQNIP------------------------VKTDDGIKIREGFIAGEGKVLMS 685 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437 D + +E RVL ++ ++ I+A+ +D++ T + FN P + VS+EQR I Sbjct: 686 IDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIA----- 740 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + + + A + K Sbjct: 741 ---------------------------------------KIINFSIIYGKTPFGLAKELK 761 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + ++ V K++ E Sbjct: 762 IPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLF------------------- 802 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R+ S + T SQ R ++Q + ++L + M Sbjct: 803 -------GRKRYISGIDSKN---KTIKSQAERMA------VNTVIQGTAAEVLKKVMVKV 846 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE++ E + +M + + L K Sbjct: 847 YDILKDKEDIALLLQVHDELIFEVEKNSVEKYSGILADIMKNTVQL-EDVKLNININIGK 905 Query: 672 RY 673 + Sbjct: 906 NW 907 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 98/664 (14%), Positives = 178/664 (26%), Gaps = 151/664 (22%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 + L D+++ + ++ L K ++ S Sbjct: 369 NNDWFSDIIFNLLTDKSIRKITYSLK---PLLKFYAEQSHEITAIEDLELMQYALSAGLS 425 Query: 109 LKNACL-ALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-------- 149 KN AL + E E A A S Sbjct: 426 QKNLFEEALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDASTGSTSKLPLETKFGK 485 Query: 150 ------ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + Y + +E RL D + + + G ++D Sbjct: 486 MSNVINESARIVAEFTSLYKQNILELKDNKAFRLYSNID--LPICFILDKMEKIGIKVDA 543 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSE 258 + + +L E KL+E+I L+ + L LF + S Sbjct: 544 NYLNQLSAEFGAEILKLEEEIFALSGTKF-NIGSPKQLGEILFEKMQLPFGKASAKASSY 602 Query: 259 GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T IL + DL+L + ++L + + + T ++ T Sbjct: 603 STGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTT 662 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P + +R IA G KL+ Sbjct: 663 GRLSSQEPNLQNVP------------------------IRSSEGNKIRQAFIAEEGYKLI 698 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+L+ IA D +AF N +DI+ T + FN +++ E R K + Sbjct: 699 SADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN- 757 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ A + Sbjct: 758 -------------FGIIYGIS------------------------------AFGLAKQLN 774 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + K + A+++GV + + + Sbjct: 775 VSNGEASEYIKKYFAEYKGVQEYMEQTKAFA--------------------------SSN 808 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 +++ R+ + R +Q + DI+ M N Sbjct: 809 GYVINFFGRKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINL 857 Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEA 670 +VL +HDE++ E P+ V + +M S +P+ E Sbjct: 858 DQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMEN--STNMDVPIITEIRVG 915 Query: 671 KRYR 674 + Sbjct: 916 NNWM 919 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 80/667 (11%), Positives = 181/667 (27%), Gaps = 148/667 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKT 83 + A+ + ++ + ++L + + V ++ + Sbjct: 337 EMVGFAW----GNAQQIYASQDINLLQQPAFKEFLGNTA-LKV-----YDFKRSKVLLSR 386 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 LGI++ + +R L + ++ L + + Sbjct: 387 LGIELSQPSFD-----SR----------LAKYLLSTVDNNEIATIANLYGKTRLVEDEVV 431 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTI 194 + + L ++ +L L + E+ L + + Sbjct: 432 YGKGAKRALPEKAILLSHLARKVTVLVETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G +++ + + +Q + +L ++I L + L LF G+ Sbjct: 492 EIAGIKVERETLQTMQTENEEVLARLTQEIYDLAGEEF-NINSPKQLGGILFEKLGLPTS 550 Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 T +L + IL+ + + L + + +DG++ Sbjct: 551 FTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 611 LQ-DLTQTGRLSSVDPNLQNIP------------------------IRLEQGRLIRKAFV 645 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G++ I+AF +G DI+ +T + F + V+ Sbjct: 646 PEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPN 705 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y L + + + FE + +++ + Sbjct: 706 DRRNAKAVNFGVVYG-----ISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVR 760 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + L R + + ++ + Sbjct: 761 EARDKGYVETLFHR---------RREIPDINSRNFNVRGFAERTAINSPIQGSAADI--- 808 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + + N T Sbjct: 809 ------------------LKIAMIRLDQALTDGNFKTR---------------------- 828 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAE 666 + IVL E P+ ++ TL +M +PLKA+ Sbjct: 829 -----MLLQVHDE---IVL--------EVPENELTAIKTLVKDIMESAIELV--VPLKAD 870 Query: 667 GYEAKRY 673 K + Sbjct: 871 ESAGKTW 877 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 112/692 (16%), Positives = 192/692 (27%), Gaps = 162/692 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 LF+D ET + L + L D E L + L Sbjct: 25 LFLDTETTGD---------------RLRLVQLG-GQGEIFLLDLFELGERGVLFLKELLS 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSE 120 + V V HN F+ + I T V ++ SL++ + Sbjct: 69 QKGV--VGHNLKFDLKYLYRY---HIEPYAVFDTMVASQLLAELDRHSLQSVAMHYLGQV 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE------YCKRDVEATRELF 174 ++ K ++ D + L T +F Sbjct: 124 LDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLKTRTSRVF 183 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 P++ E + G +D + + + +K+ I+ Sbjct: 184 GLQNPVAIVEMAFVQEVAKLELNGLPVDTQELESV---FREYSRKVQRMIMDFISTHRVD 240 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L +L G+DL + T LS + + ++ R +S + K Sbjct: 241 PMSPKQLGEFLTRRLGLDLPKTEKGNVSTDDKALSEHAHHPVVRHILEIR--ASKKILDK 298 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + E + + R+ + GA TGR + QN+P+ Sbjct: 299 LEEIRENLRGN-RVYPEFKQIGA-VTGRMASSNPNVQNIPKD------------------ 338 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R A G V+AD + IE R+ A GE I+AF G D++ Sbjct: 339 ------------LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRY 386 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T + + ++KE+R + K + L Y AK A+ G+DL Sbjct: 387 TASILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPV---------- 436 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +++ + + +G + E Sbjct: 437 -----------------------------EEAQAIRERFFSYFEGFRDWHNRVKEELKKT 467 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 + G R Sbjct: 468 GKSSGHTLLGRSYVAHTF------------------------------------------ 485 Query: 592 TYGGKLTENIVQAISRDILCEG--MKN--ATKNG--YDIVLTVHDEIVSETPDTPYFSVG 645 +Q D+L M + K G +V VHDEIV E P V Sbjct: 486 ---PDAVNYPIQGTGADLLKLAVLMLDAELRKEGIPAKVVNLVHDEIVLECPQEVAQEVQ 542 Query: 646 TLCSL-MTKNPSWAKG-LPLKAEGYEAKRYRK 675 TL M + S +P++ E +R+ K Sbjct: 543 TLLERAMKRAGSIILKRVPVEVEVTVKERWEK 574 >gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] Length = 862 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 72/520 (13%), Positives = 146/520 (28%), Gaps = 121/520 (23%) Query: 167 VEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ +E + +L ++ D E L + + + +G R + ++ + E + ++L Sbjct: 447 IQVDQEYYPKLKEMNLISLYRDVELPLVTILKDMEQKGIRCEEKVLDHIAEGTLAKIQEL 506 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ I K+ + L + L+ I T L D IL Sbjct: 507 EKAIYKVVGHEF-NLNSPKQLAVVLYDELQILKGKKR-STAAGELEKIQGLYTVVDDILA 564 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S L + + +DG++ A++TGR S QN+ Sbjct: 565 YRKYSKLYSTYAEGLKKYIQADGKIHTVYNQA-ATQTGRLSSSEPNLQNI---------- 613 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + G LV +D +E R+LA +A IK Sbjct: 614 --------------SVRDEEGREIRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIK 659 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF N DI+ T F+ +++V+ QR K + G+ Sbjct: 660 AFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAKTVNFG--------------IVYGISDF 705 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + + + + Sbjct: 706 GLASQ------------------------------LGVSRFEARDFIEKYYRVYPEIKTY 735 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + RR ++ G+ + + Sbjct: 736 MESVIHFCKENGYVETLCHRRREIPEIHDKNKQ-----------------IQAFGERAAM 778 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q + D++ M + ++L VHDE++ Sbjct: 779 ------------------NAPIQGTAADLIKLAMIQVREMIDENHLKAKMILQVHDELIF 820 Query: 635 ETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 P + T+ M S +PL +E + + Sbjct: 821 NVPLEEVEIMKTIIQKGMETAMS--LDVPLTSEISIGQTW 858 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 358 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 417 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 418 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 475 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 476 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 524 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G D+D+ L+ + + +E + I + L+ LF + + Sbjct: 525 GIAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 583 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 584 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 640 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 641 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 675 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 676 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 735 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 736 SKIKAMNYG--------------LAYGLS------------------------------A 751 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 752 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 800 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 801 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 836 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 837 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 894 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 895 LTVSIGVGRSW 905 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 99/659 (15%), Positives = 184/659 (27%), Gaps = 126/659 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + +A + + L +L D T + H++ + G Sbjct: 345 GRVDGFGFATQERAAYAGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDAH-GWS 403 Query: 88 IPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + T++ A L + L E + + G + F + Sbjct: 404 LRGL-VTDTALSAYIVAPDQRSYDLADLTLRYLKRELKQEDDGG--QESLFGDDEVGGDG 460 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 T + +A + + D RL+ + E L L + G +D + Sbjct: 461 VATTSMLYARA--VLDLAAELDSAVEAAGGDRLLS--EVELPLLHLLARMEKTGIAVDTE 516 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TL 261 + L+ A + K+ ++ + I + L++ LF + ++ T Sbjct: 517 HLDALERHFAGQMKQAADEAYGVIGKEI-NLGSPKQLQVVLFDELDMPKTKRTKTGWTTD 575 Query: 262 KSILSHSNITQLAKDLI--LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 L + L+ L + + + L + V DGR+ T A TGR Sbjct: 576 ADALQQLYVKTEHPFLLALLRHRDVTRLRVT-IEGLLKTVQDDGRIHTTFNQTIA-ATGR 633 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P +R + G + L+ Sbjct: 634 LSSTEPNLQNIP------------------------VRTEEGRGIRKGFVVGGGFESLMT 669 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ ++ I+AF +G D + T A+ F D VS EQRA K M Sbjct: 670 ADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYG 729 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 L Y L ++ FE + + + ++ + + Sbjct: 730 LAYG-----LSAFGLSQQLGIEPSEARGLMEEYFETFGGIRDYLRSLVEEARRTGYTETI 784 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 +G R +L + E + Sbjct: 785 MGR---------RRYLPDLLSDNRQRRETAERM--------------------------- 808 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS---RDILCEGMK 615 LN K+ VQA + D+ + Sbjct: 809 --------------------ALNAPIQG---SAADLIKVAMLRVQA-AIDEADLSSRMLL 844 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 DE+V E ++ +L M +PL + Sbjct: 845 QVH-----------DELVFEVAPGEREALESLVRAQMGSAAD--LNVPLDVSVGTGLSW 890 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 106/648 (16%), Positives = 183/648 (28%), Gaps = 148/648 (22%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN-----SLFERILFKKTLGIDIP 89 YA D V + +DL++ L + V N + G Sbjct: 345 YAVQDTTVY--PLED-----ADLVRLLDNADVTLDVFNSAPLYAK------AMAAGGWGS 391 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 S W + A +S K I+ + + CT Sbjct: 392 SIVW-DGKLAAYLLDASAS--------------------KYQISELIPAYKAAAAFTCTD 430 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A +L + + E T L + E L + + G +D D + + Sbjct: 431 Y--PDAGRLADLFARMKAEITACGEDALYN--EIEFPLAQVLADMTRTGVLVDKDGIEQF 486 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILS 266 + +E +++ I T + L LF G+ + T L Sbjct: 487 GVKLREELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLE 546 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 L +D++ R A + L + + DGR+ T A RTGR S Sbjct: 547 SLREYPLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPN 604 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +R+ +A G LV AD + IE Sbjct: 605 LQNIP------------------------IRTELGSQLRAYFVAKPGCVLVDADYSQIEL 640 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA I G++ +AF NGEDI+ +T AK + P +V+ R+ K + + Y G Sbjct: 641 RILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKG-- 698 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + + + + + L G Sbjct: 699 ---AYSLSKDIGVTVKEADAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGR----- 750 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 R + ++ + + Sbjct: 751 ----RRTLPELASTNFNVRASGERMARNTPIQGTAADVI--------------------- 785 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +L V R R K+ ++ L Sbjct: 786 KLAMVRV-------------WKRLR--DEKMASRLI-----------------------L 807 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 TVHDE++ E P+ + M +A +PL + + K + Sbjct: 808 TVHDELIVEAPEAEAEQAARILREEMEGCVQYA--VPLSTDVHAGKNW 853 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 89/644 (13%), Positives = 165/644 (25%), Gaps = 142/644 (22%) Query: 42 VKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 + D + +L ++L + H+S + G+ + TS+ A Sbjct: 341 AIVQDLADVDPKDEKVLAEWLANPQATKWLHDSKQTYHTL-QDQGLKLDGVE-HDTSLAA 398 Query: 101 RTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 L + G L + RA + Sbjct: 399 YLLRPDVRTLGLADVVQRH----------VGHELSENATGPERAQAVAELVRALTPEIEA 448 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 D+E L + + G +D + +L + Sbjct: 449 AGQAELYFDLEVPLAL----------------ILAAMEHAGIAVDDAALQELSDDYGARL 492 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG------TLKSILSHSNIT 271 + +L + L+ LF + ++ L+ + Sbjct: 493 NEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNH 552 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L+ +R + ++ L EAV DGR+ T GA TGR S QN+P Sbjct: 553 PFLGHLMAHREYQKMKST--IDGLIEAVGDDGRIHTTFNQKGA-ATGRLSSSDPNLQNIP 609 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 A +R+ G L+ AD + IE RV+A Sbjct: 610 ------------------------VRTDAGRKIRAAFTVGEGYETLLTADYSQIEMRVMA 645 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ + I+A+A+GED++ ++ F+ P+D+V+ E R K + L Y Sbjct: 646 HLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYG-----LSA 700 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L + + FE + + + + + E + L G Sbjct: 701 FGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGR--------- 751 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + E +L Sbjct: 752 RRYLPELNSSNRVARENAERAALNAPIQGTAADII---------------------KLAM 790 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 V + + A+ + D Sbjct: 791 LRVDREITRQQLASRV---------------------------LLQVH-----------D 812 Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E+V E + L M +PL + Sbjct: 813 ELVVEVAPGELEQITELVEREMDAAAQ--LRVPLDVSAGTGDSW 854 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 110/707 (15%), Positives = 205/707 (28%), Gaps = 189/707 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET P + L A +D PV + D +L+ + Sbjct: 23 KVIAVDTETTGLDP----------HTCQLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 72 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-----SLKNAC-LA 115 + + + N+ F+ + +DI T + ++ +LK Sbjct: 73 LSTSGIKIFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN + T + + Y RD E L K Sbjct: 130 LNEDLDKEE----------------------QTSNWQGELTESQILYAARDAEILLRLRK 167 Query: 176 RLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +IP E + RG +D +L E ERK +++ Sbjct: 168 VMIPQILENHLTQIAGIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYT 227 Query: 227 LTDGIIR-------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + + + L GI + ++ L + Sbjct: 228 YVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEH-GIPVAATAKQDL-----YPYRRHP 281 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L+ ++ S L + + GRL A +GR S Q +PR Sbjct: 282 LVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPR 340 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 R+C A G+KL++AD + IE RV A I Sbjct: 341 DS----------------------------EFRACFAAPPGRKLILADYSQIELRVAAQI 372 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ I A+ GED+++ T + + PI +++ ++R K + L + GA + A Sbjct: 373 SGDTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYA 432 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ ++ + Sbjct: 433 QQN--------------------------------------YGVEMSLEQATEFRERFFK 454 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + G+ + + + + R+ VY + Sbjct: 455 AYTGIHRWHQSIKAHLPKEG----------------------------RTLAGRKFVYYE 486 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM-KNATKN---GYDIVLTV 628 G Y NT VQ + DI+ + + + IV V Sbjct: 487 KAGLPGYYNT------------------PVQGTAADIVKKALGLLIERLAGTDTYIVGIV 528 Query: 629 HDEIVSETPDTPYFSVGT-LCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 HDEI+ E+P ++ L S M + + +P K + ++ + Sbjct: 529 HDEILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESW 575 >gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] Length = 439 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 73/538 (13%), Positives = 151/538 (28%), Gaps = 119/538 (22%) Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 T H+ + K + + ++L + E + ++ + G ++ ++ Sbjct: 5 TLYAHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLV 64 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 K++ + L I +L + L + LF + ++ T + Sbjct: 65 KMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDV 123 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L IL+ S +N L + + +DG++ + TGR S Sbjct: 124 LEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGRLSSVE 182 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P +R + L D + Sbjct: 183 PNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQ 218 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ 442 +E RVLA ++ E ++AF G DI+ T K F D+V+ R K + Sbjct: 219 VELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF----- 273 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ ++N+ + Sbjct: 274 ---------GIVYGISDYGLAKNL------------------------------GISRQE 294 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + ++ + K + + Sbjct: 295 AQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMH----------------------- 331 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---- 618 RR + D+ + + R + +Q + DI+ M Sbjct: 332 ---RRRLLPDIHNKNFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKMQSELE 379 Query: 619 --KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L +HDE++ + P + TL +M + +PL A+ + Sbjct: 380 QRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAAQ--LDVPLIADANWGHNW 435 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 92/671 (13%), Positives = 182/671 (27%), Gaps = 143/671 (21%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK 81 + + A D +D E S D+ L D+ H++ Sbjct: 340 WGSGSGDVEAVALGGVDGNAVWFDAAELSPEDEDVFAAWLADKDRPKAMHSAKGPVEALA 399 Query: 82 KTLGIDIPSKRWICTSVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCK 137 G ++ T + + +A LN + + +A++ Sbjct: 400 -ERGWEVAGLTC-DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLDFGED 457 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 +S + E L L D E + ++ Sbjct: 458 HFAESMERAVAVTRLADVME---------KEVEARGGSEL--LHDVEMGVQRCLISMERA 506 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G D+D+ L+ + + +E + I + L+ LF + + Sbjct: 507 GIAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKI-NLSSPKQLQGVLFDKLDMPKTRRT 565 Query: 258 EG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + LA L+ +R A ++ L + + DGR+ T Sbjct: 566 KSGYTTDADALAGLYETTEHPFLAH-LLEHRDAIKLRQT--VDGLLKEIRDDGRVHTTYM 622 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 623 QTVA-VTGRLSSKDPNLQNIP------------------------MRTEEGRRIREGFVV 657 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + VS QR Sbjct: 658 GEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQR 717 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M GL Sbjct: 718 SKIKAMNYG--------------LAYGLS------------------------------A 733 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + K+ + + + ++ V + +++ + + Sbjct: 734 YGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLL----------- 782 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 RR D+ + +Q + D+ Sbjct: 783 ---------------GRRRYLPDLTSTNRQRRDMAERA---------ALNAPIQGSAADL 818 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + ++L VHDE++ E V + + M +P Sbjct: 819 IKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHAMD--LSVP 876 Query: 663 LKAEGYEAKRY 673 L + + Sbjct: 877 LTVSIGVGRSW 887 >gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14] Length = 855 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 106/793 (13%), Positives = 198/793 (24%), Gaps = 202/793 (25%) Query: 5 FIDIETRSPQPLPKVGV---WAYAEQAV-ITLCA---YAWDDEPVKLWD-RTEQSAMPSD 56 D E + + VG + Q I L + + P D Sbjct: 137 ACDTE-VADIDVKSVGPVGNGKVSLQFEDIALYDGPDVNYGNGPYIWVDNLDNAEGTLEY 195 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLK 110 +L D ++ V HN F+R + GI++ T +AR SL+ Sbjct: 196 FRAFLEDSSLKKVWHNYSFDRHVLFNH-GINVQGLH-GDTMHMARLWNTARFKRGGYSLQ 253 Query: 111 NACLALNFSEHL-TKMEEGKALIARFCKGSI-DSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L K G + + P + Y D E Sbjct: 254 ALTSDLLHQRKKNMKELFGTPKPRKDGSPGKEKTIPNVADLQRCADFRSRWIRYSVFDAE 313 Query: 169 ATRELFKRLIPLSDGER--------------------------DLWLLDQTINDRGYRID 202 +T L + L + I +G +D Sbjct: 314 STWFLHRVLQHKLELTHWIEDADVLTGQQVDRSMYEFYLKYLVPFGECLTDIERKGMNVD 373 Query: 203 LDLVLKLQELIAQERKKLDEDI------------------VKLTDGIIRSSRQTYALRMY 244 + ++++ +RK+L++ + ++ + + Sbjct: 374 RAYLRRVEKTALNDRKRLEQHVLTWAKRYCEEADRMNVYSAAQKQQLLFAPYSDAQGKAI 433 Query: 245 L-------------FLITGIDLVDM------------------------SEGTLKSIL-- 265 L + G + L+ + Sbjct: 434 LPAERSFEVENTEQHIEPGKQRPKKKRNITIRGFGLTPISFTASGLPSVTASVLEELAGN 493 Query: 266 ------------SHSNITQLAKDLILNRLASSGSAI------LKLNTLSEAVSSDGRLRG 307 H + A + + L E S GR+ Sbjct: 494 PEANPPKYGKAYDHFADKEEGAAACHALRALYEISSINTMLNNFILPLQELADSAGRVHC 553 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 +L + TGR S QN P E+ +R Sbjct: 554 SLNLN--TDTGRLSSRKPNLQNQPALEKDRY------------------------KIRDA 587 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A GKKL+VAD + +E R+LA I I+AF G D + T ++ Sbjct: 588 FVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYD--------N 639 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 + E+ L + + +T + + + Sbjct: 640 VAKAVESGEVLLEWDYTKGT-----------SPPVPLLKEKFATERKNAKILNFSIAYGK 688 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + W Q V + + + + Sbjct: 689 TPFGLSKDFGVRRVEASKILDKWYGGRQEVRKWQEQAIDTARKFGYTRTLMGRY------ 742 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RRL + +K + A S R +Q + Sbjct: 743 ------------------RRLPDAMLKSNSFISRKAQSHAERAA------VNTPIQGAAA 778 Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG 660 D++ + M K G+++V +HDEI+ E P+ + LM Sbjct: 779 DLVMQAMLRINKNSRLRSMGWEMVCQIHDEIILEGPEDNAEEAKAIVKDLMENPFEHPLS 838 Query: 661 LPLKAEGYEAKRY 673 + L+ + + + Sbjct: 839 VDLQVDAKIDRSW 851 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 87/623 (13%), Positives = 172/623 (27%), Gaps = 136/623 (21%) Query: 73 SLF----ERILFKKTLGIDIPSK-----RWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 F + + ++ + + + Sbjct: 2 IKFIAELDIKFISYNFKALLNLGFTFKSMYMDMMIAYHLISSQTKMDVL-----LPITEY 56 Query: 124 KMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATRE-LFKRLIPLS 181 E K F K I++ D R + Y + + +E L L Sbjct: 57 SKVEAKDFKTTFGKTHIETLLVDEFARYLSNIGLGILACYDEINHLLHKEELHNIL---I 113 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E L + + +G +ID+ + +E K ++ I + + L Sbjct: 114 QNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEF-NINSPKQL 172 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSE 297 LF+ + ++ T +L L+L+ + ++TL Sbjct: 173 GDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPN 232 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V S+ R+ + G + TGR S QN+P Sbjct: 233 LVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIP------------------------VK 267 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A GK L+ D + +E RVL ++ ++ IKA+ +D++ T + F Sbjct: 268 TDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYREEKDLHDLTARRIF 327 Query: 418 NT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 N D V++EQR I Sbjct: 328 NLSDSDDVTREQRTIA-------------------------------------------- 343 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + A + K+ K + ++ V K++ E Sbjct: 344 KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKT 403 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 R+ S + T +Q R Sbjct: 404 LF--------------------------GRKRYISGIDSKN---KTIKAQAERMA----- 429 Query: 597 LTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650 ++Q + ++L + M K+ ++L VHDE++ E + + + Sbjct: 430 -VNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQVHDELIFEVEENSVEKYSEILADI 488 Query: 651 MTKNPSWAKGLPLKAEGYEAKRY 673 M + + L K + Sbjct: 489 MKNTVKL-EDVNLNININTGKNW 510 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 91/568 (16%), Positives = 160/568 (28%), Gaps = 126/568 (22%) Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K L + P C + +A+ + EA E + L +G Sbjct: 338 KYPFDIKLASYLVNPDSKGNPRVCFENINDEAFAKLMNLSEE--EAILESYPFLREYIEG 395 Query: 184 ----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 E L + ++ RG +ID + + + +A + ++ I L Sbjct: 396 NNLNFLLSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALAGEEF- 454 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L+ LF GI + ++ T L LI+ A S Sbjct: 455 NINSTKELQRILFEKLGIKPIKKTKTGYSTDSESLQMLAQKYEIAQLIITYRAISKVIST 514 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + + + RL T + TGR S QNLP + Sbjct: 515 YIRPFLDKMDKSNRLHTTFNQT-LTSTGRLSSSNPNLQNLPAGD---------------- 557 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R ++A G KL+ +D + IE RVLA ++ + I+ F N EDI+ Sbjct: 558 -------DELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHT 610 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T K F V R + K + G+ Sbjct: 611 QTAVKIFGVHPSMVDHHLRRMAKTIN--------------FGIIYGMG------------ 644 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 Y + + + + + GV + Sbjct: 645 ------------------YVSLSKTLNISKDKARQFIEKYFERFAGVKSY---IENTTEK 683 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + G + RR + ++ + L + Sbjct: 684 ATKNG-----------------------FVETYFGRRRYFFNINSNNKRLAQFEKRA--- 717 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT 646 +Q + DI+ M + IVL VHDE++ E + +V Sbjct: 718 ------AVNATIQGTAADIIKIAMVKLYEKLKNLDAHIVLQVHDELLVEAKEDIAENVAG 771 Query: 647 LCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + M + +P+K A + Sbjct: 772 IVKDTMENAVKF--DIPIKTNTKIANNW 797 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 94/647 (14%), Positives = 177/647 (27%), Gaps = 140/647 (21%) Query: 38 DDEPVKL-WDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 D + V + D + + +L D H++ G+++ Sbjct: 342 DGDHVGVEMDLADLDPKDEKAIKTWLADPASPKWFHDAKRAFHALA-PQGLELDGVE-HD 399 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQ 154 S+ A + L + ++ +D +A + Sbjct: 400 ASIAAYLLRPDVRISGLGDIL--------------QSQAGRELPANADGFDRAQAVRDLV 445 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + E +L E L L+ + G +D + + +L A Sbjct: 446 KVLTEKLAAAKQEELYYDL----------EVPLCLILARMEHEGIAVDGEHLQELSNDYA 495 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSH 267 + + +L + L+ LF + ++ L+ + + Sbjct: 496 AKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQ 555 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 +N LA L+ +R ++ L EA+ DGR+ T GA TGR S Sbjct: 556 TNHPFLAH-LMAHREYQKMKTT--IDGLIEAIGDDGRIHTTFNQKGA-ATGRLSSSDPNL 611 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P A +R+ A G+ L+ AD + IE R Sbjct: 612 QNIP------------------------VRTDAGRRIRAAFHAGWGETLLTADYSQIEMR 647 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 V+A ++ ++ I+A+ +GED++ ++ F+ P+D+V+ E R K + L Y Sbjct: 648 VMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVYG----- 702 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 L + V + F + + + + Q E + L G Sbjct: 703 LSAFGLSQQLGISAGEAKVIMENYFTRFGGVKRYLDEVVHQAKETGYTETLYGR------ 756 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R + + E + Sbjct: 757 ---RRYLPELNSSNRVARENAERAALNAPIQGTAADII---------------------K 792 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 L V N + + Sbjct: 793 LAMLRVDRAIREQNLKSRV---------------------------LLQVHD-------- 817 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E V L M +PL+ K + Sbjct: 818 ---ELVVEVAKGELDKVSELVQREMDAAAR--LRVPLEISAGHGKNW 859 >gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 328 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 125/333 (37%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-----ED 407 +A + LAS +R CI+A GKKLVV+DL+ IE R+LAW+AGE WK+ AF D Sbjct: 1 MASVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPD 60 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +Y YA+AFN + V+K QR IGKVMEL LG+ GG F T A GLDL++ + Sbjct: 61 LYKLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAAL 120 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + +A+ + + + + +++ AC+ +K+ WR H W L Sbjct: 121 PNIPRDVQREAKGWYDESVKRKATYGLSERVFI-ACDSLKRLWRRAHPETCDFWYQLERT 179 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NT 582 + V R + I LPS R L Y KG+ +Y+ N+ Sbjct: 180 VRTAIATPAKTLYCGYLKVRR-----DGAWLRIQLPSGRALCYPSPTIEKGNITYMGINS 234 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE++ E PDT + Sbjct: 235 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDY 294 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L SL++ NP WA +PL A G+EA YRK Sbjct: 295 TDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327 >gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50] Length = 665 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 94/341 (27%), Gaps = 58/341 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE + V N ++R + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + GK + A + G Y D + Sbjct: 460 SLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADV 504 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ E + Sbjct: 505 TLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLA 564 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLA 274 +L++ ++ + T L+ LF GI + + T + +L + Sbjct: 565 ELEKKAHEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPL 623 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314 +IL + + L ++ GR+ + Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 >gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115] Length = 880 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 89/659 (13%), Positives = 179/659 (27%), Gaps = 147/659 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRTKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L + + + + FE + +++ + + Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREA 761 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 + + + R + ++ + SA + V Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + R L ++ K Sbjct: 813 INLD-------------RALTENNFKS--------------------------------- 826 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + IVL V P+ +V L M A +PL A+ Sbjct: 827 ---RMLLQVHDE---IVLEV--------PNDELTAVRQLVKETMEAAIELA--VPLVAD 869 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 88/642 (13%), Positives = 168/642 (26%), Gaps = 126/642 (19%) Query: 44 LWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D + +L D V H++ + + G + R T++ A Sbjct: 357 WFDPAQLDETDETAFAAWLADADRPKVFHDAKGAMRVLAEH-GWSVDGVRM-DTALAAYL 414 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L+ +A + ++ + + ++ Sbjct: 415 VKPGRRSFALDALSLEYLHRELAPA--AAADGQLAFGADEAAEAEMLMIQARSILDLGEV 472 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F + A L D E L + G D + ++++ A + Sbjct: 473 FEGRLEEVGAADL--------LRDMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQ 524 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273 + ++ + L+ LF + ++ + Sbjct: 525 QAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTDNE 583 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 584 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 639 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392 +R + G + L+ AD + IE RV+A + Sbjct: 640 ----------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHL 677 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF +GED++ T ++ F V E R K M L Y Sbjct: 678 SEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYG-----LSAFG 732 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L+++ + FE + + D+ L G R Sbjct: 733 LSQQLNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGR---------RR 783 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + E + +L R L +D Sbjct: 784 YLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI------------AMLNVDRALREAD 831 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 +K M L VHDEI Sbjct: 832 LKSR-------------------------------------ML----------LQVHDEI 844 Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V E + + M+ PL + Sbjct: 845 VLEIAPGERAATEEIVRREMSGAVQLRA--PLDVSVGVGPDW 884 >gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] Length = 903 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 190/662 (28%), Gaps = 146/662 (22%) Query: 32 LCAYAWDDEPVKLWDRTEQ----SAMPSDLLQYLRDETVMCVAHNSLF-ERILFKKTLGI 86 + + +LL+ + +++ F + + G Sbjct: 364 GISVTLKSGN-YYMPLSHDYIGSENNSIELLKKFLSADIEFISY--KFKDIL----NEGY 416 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 +I + + + + K + + +E L K GK Sbjct: 417 EIKNIHF-DVMIAYFLL--TAQTKESIEVVLHNETGDDFPLYKDIFGKE-------DPSK 466 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P + ++ L+ Y E L + E L L+ + G I Sbjct: 467 LPVEEYGEFMMKRSESLYDIYKDLKNRIELEDMHDLF--YNVEMKLILILSKMEQEGIAI 524 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + + ++ + ++L ++I K+++ + L LF+ I+ V ++ Sbjct: 525 DPEYFREFSLELSDKLQELKKNIFKISEEEF-NLNSPKQLAEILFMKLNIEPVSKTKTGF 583 Query: 259 GTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T +L + IL+ + ++ L + RL T GA T Sbjct: 584 STNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERNRLHTTFNQTGA-AT 642 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R I+ G L+ Sbjct: 643 GRLSSSNPNLQNIP------------------------VKSDEGIKIRRGFISDKGNTLL 678 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE RVLA ++ ++ IKA+++G D++ T K F+ D + Sbjct: 679 AIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDIDTDVTRSQ---------- 728 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + + + + + Sbjct: 729 -----------------------------------RTMAKIVNFSIIYGKTPFGLSKELG 753 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + K + ++ V +L + + + Sbjct: 754 ISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVKTYF------------------- 794 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R+ + + Q R ++Q + DIL + M Sbjct: 795 -------GRKRSVDGISSKNGNIK---KQADRMA------VNTVIQGTAADILKKVMIEI 838 Query: 618 TKNGYD-----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 K D + L VHDE++ E D + ++M + + K + L+A + K Sbjct: 839 DKKIKDKNDIKMNLQVHDELIFEVKDESVEKYADLIKNIMENSIKF-KNVKLEANVAQGK 897 Query: 672 RY 673 + Sbjct: 898 NW 899 >gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17] gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17] Length = 943 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 94/622 (15%), Positives = 180/622 (28%), Gaps = 144/622 (23%) Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIA 133 + +LG+D+ + W T + + L L Sbjct: 437 HILA-SLGLDLA-EPWFDTKLAGYLVQPDYHADSLEQAASHFLQLQLDNADDVAQGQLDL 494 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 D H+ + + ++ RE F+ L + E + + Sbjct: 495 SGDVDPADQ----RKDLLHMAMVRALADMLAAKID-EREQFRLLQSI---ELPVSHVLFG 546 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G +D + ++++ A + + ++ G + + L+ LF G+ Sbjct: 547 MEQVGASVDFMRLTEMRDRFAVDARDA-QETAWQFAGSRVNLQSPKQLQAVLFDDMGLKP 605 Query: 254 VDMSEG----TLKSILSHSNITQ--------LAKDLILNRLASSGSAILKLNTLSEAVSS 301 ++ T S L + L+ +R + I + +L +AV+ Sbjct: 606 TKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI--VQSLIDAVNP 663 Query: 302 D-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D GR+ T + A TGR S QN+P Sbjct: 664 DDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAE 698 Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +RS + G + L+ +D + +E R++A ++G+D I+AF +G D + + + Sbjct: 699 GREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGI 758 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+D ++ +QR K M L Y T Sbjct: 759 PVDDITPDQRTHVKAMSYGLAY-----GLSTYGL-------------------------- 787 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 A + K+ + +K + A V + + L Sbjct: 788 -------------AQQLKISPGEADRLKSQYFATFGKVHEYLESLVADAREKGYTETMF- 833 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 RR + ++ + A + Sbjct: 834 -------------------------GRRRYFPGLQSPNRNIRDAAERG---------ALN 859 Query: 600 NIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 +Q + DI+ M K I+L +HDE+V E V L M Sbjct: 860 APIQGSAADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVTGLVRDAME 919 Query: 653 KNPSWAKGLPLKAEGYEAKRYR 674 A +PL ++ Sbjct: 920 HAVDLA--VPLDVSTGIGSDWQ 939 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 91/652 (13%), Positives = 175/652 (26%), Gaps = 135/652 (20%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68 + G+ + E I L A ++ PV ++D + + L + L DE ++ Sbjct: 1263 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + N F+ + T + ++ ++ + + K Sbjct: 1321 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLSV 1373 Query: 129 K-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 + + + + L Y K + T E + ++D E Sbjct: 1374 YLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQITAENMQI---VNDIENKC 1430 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 L + G ++DL+ + K + I E + + K + + L Sbjct: 1431 ILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKKELKNDDINVNSQQQILKALQD 1490 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 DL + + I A L+ N L ++ ++ Sbjct: 1491 NNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAFYLKLPLHINKKTNKIH 1550 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + +GR+S Q +PRQ +R Sbjct: 1551 TTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNIRE 1581 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I + ++AD IE ++ A I ++ +KA+ N D++ T + I++++K Sbjct: 1582 IFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINK 1641 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 E R + K + L Y +T + + + Sbjct: 1642 EDRHVAKAINFGLLYGMNYVNLRT--------------------YANTYYNVKMNLDQ-- 1679 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 C ++ ++G+ + S + R Sbjct: 1680 ----------------CLYFYNSFFEHYKGLSRWH----NSVKQTKALEYSTLSNRKVVF 1719 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 P K VQ Sbjct: 1720 PYFSFT-------------------------------------------KALNYPVQGTC 1736 Query: 607 RDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653 DIL + KN I+L VHDEI+ E L M Sbjct: 1737 ADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVESMEN 1788 >gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 878 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 81/662 (12%), Positives = 165/662 (24%), Gaps = 141/662 (21%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LG+D+ + + + A + Sbjct: 377 SKVLLSHLGVDL-PAPAFDSRLAKYLL-STVDDNELSTIARL----YTDYVLDSDEAVYG 430 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCK---RDVEATRELFKRLIPLSDGERDLWLLDQT 193 KG + P +H+ + Y + D + L D E+ L + Sbjct: 431 KGVKRAVPKKAVLLSHLARKIVVLNYSEKVMLDKLTEHQQASLLF---DMEQPLANVLAK 487 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 + G + + +++ +L ++I L + L LF + Sbjct: 488 MEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPT 546 Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 T +L IL + + L + + DG++ Sbjct: 547 SYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTR 606 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P +R Sbjct: 607 YLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 641 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSK 426 + + L+ +D + IE RVLA I+ ++ I AF G DI+ +T + F + V+ Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L + + + FE + +++ + Sbjct: 702 NDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545 + + L EL + ++ + + SA + Sbjct: 757 RDAKDKGYVETLFHRRREL---------PDINSRNFNIRQFAERTAINSPIQGSAADILK 807 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + + + + D Sbjct: 808 IAMINLDKALVDGQFKT------------------------------------------- 824 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 + + I+L V P +V TL M +PL Sbjct: 825 ------KMLLQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--LSVPLI 865 Query: 665 AE 666 A+ Sbjct: 866 AD 867 >gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7] gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7] Length = 875 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 90/633 (14%), Positives = 169/633 (26%), Gaps = 148/633 (23%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K ++ S Sbjct: 375 DIIFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLS------ 425 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 F + ++ + + Y + E Sbjct: 426 ----------------QKNLFKEVLKETWIENIIIESAKIVINFIALYKQTIWELKDNKT 469 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 RL D + + + G +D + + +L E KL+E+I L+ + Sbjct: 470 FRLYSNID--LPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-N 526 Query: 235 SRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNRLASSGSA 288 L LF + S T IL + DL+L + Sbjct: 527 IGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLK 586 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++L + + + T ++ TGR S QN+P Sbjct: 587 NTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVP----------------- 629 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI Sbjct: 630 -------IRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDI 682 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T + FN +++ E R K + G+ Sbjct: 683 HTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS---------- 718 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 A + + K + A+++GV + + Sbjct: 719 --------------------AFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFA 758 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + R+ + Sbjct: 759 SSNGYVTNCF--------------------------GRKCFVPLIHDKK-----LKQFAE 787 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYF 642 R +Q + DI+ M N K +VL +HDE++ E P Sbjct: 788 RAAINAP------IQGTNTDIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVE 841 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + +M + + A +P+ E + Sbjct: 842 IITPIIKKIMENSTNMA--VPIITEIRAGNNWM 872 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 94/665 (14%), Positives = 187/665 (28%), Gaps = 145/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + A V E + + L + E + +N + GI Sbjct: 328 KLEGLALTQGSG-VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIV 385 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLT-KMEEGKALIA---RFCKGSID 141 I + L + + RF K + Sbjct: 386 IREI--------SYDL-------ALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEWGN 430 Query: 142 SPPYDCTRANHVQAW-QLFGEYC--KRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197 S + + F Y +D K L + D E L + ++ Sbjct: 431 SGLPIGRLPEQPEQYFGEFVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERA 490 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D++ + L+ L E L E+I L+ G + + L L+ G+ +D + Sbjct: 491 GVPLDVEELAILEALFETELAVLTEEIYDLSGGPF-NIKSPKQLSDILYNELGLRPIDKA 549 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 + T +L + +L + L + V R+ + GA Sbjct: 550 KSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-V 608 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKK 375 TGR + QN+P +R + Sbjct: 609 TGRLACRDPNLQNIP------------------------IRSERGILLRKAFRLSEKNSY 644 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ + AF +GEDI+ T ++ F+ P+++VSKEQR K + Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Q A Sbjct: 705 NFGIV--------------------------------------------YGQQAFGLAKV 720 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ + + +A+ +++ + ++ + A ++ + R+ + Sbjct: 721 LKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDS-------WN 773 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 S R +Q + +++ M Sbjct: 774 EFPGSRAASGRF-----------------------------AVNTRIQGSAAELIKLAML 804 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + + ++L +HDE++ E P+ + L M + +P+ Sbjct: 805 DISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNIL 862 Query: 669 EAKRY 673 K + Sbjct: 863 IGKNW 867 >gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 913 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 101/674 (14%), Positives = 179/674 (26%), Gaps = 150/674 (22%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 L + + D D T +P D L + L D + ++ + G+ + Sbjct: 355 LVSLS-DGVRAVAIDLT--KILPEDEAALAELLADVERPKLVADAKGSWHAL-RARGLTM 410 Query: 89 PSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPP 144 S+ + L G+ S Sbjct: 411 DGV-VADPSLAGYLCRPEQRSYDVDTLTQRWLGIDL----AVVGEGQNQADAGSSQSQSA 465 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTI 194 +D A A R L L D E + + Sbjct: 466 FD-LDALASDAVPAAHLASARRAAVLLPLQVVLDEQMADRDALGLFADLEMPVAATLTVM 524 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 D G +D ++ + + E + + L+ LF + Sbjct: 525 EDVGIAVDDAVLAVRETELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELKMPKT 583 Query: 255 DMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ T L+ ++L+ +R A + L +A+ SDGR+ T Sbjct: 584 RKTKTGYTTDAEALAGLYAKTSHPFLENLLEHRDAIKLRQT--VEGLRKAIQSDGRIHTT 641 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 Q A TGR S QN+P +R Sbjct: 642 FQQTIA-ATGRLSSTDPNLQNIP------------------------ARNEEGMRIRQAF 676 Query: 369 IASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 G L+ AD + IE R++A ++G+ I+AF +GED++ A +D V+ + Sbjct: 677 TVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIDVDDVTAQ 736 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR+ K M L GL Sbjct: 737 QRSHVKAMSYGL--------------AYGLSTF--------------------------- 755 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 A + + ++ A+ A+ V + + E Sbjct: 756 ---GLARQLGIGNAEAADLRNAYFARFGRVHDYLESVVEQARRDGYTQTMF--------- 803 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR D+ D + +Q + Sbjct: 804 -----------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQGSAA 837 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKG 660 DI+ + M + + ++L +HDE++ E +V T L M Sbjct: 838 DIVKKAMIDVDRALSEQGLSSRVLLQIHDELLVEVASAEVEAVETLLKEQMGGAAE--LS 895 Query: 661 LPLKAEGYEAKRYR 674 +PL + +R Sbjct: 896 VPLDVAVGRGRTWR 909 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 87/676 (12%), Positives = 183/676 (27%), Gaps = 152/676 (22%) Query: 27 QAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-- 76 I +AW + ++L +T + V ++ Sbjct: 325 HFEIFGDNYHTEPIIGFAWGTKGQLYVSTDTGLLQTPIFKEFLE-KTPLKV-----YDFK 378 Query: 77 -RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + LGI + + + +R L + ++ +L ++ Sbjct: 379 RAKVLLSHLGITLQNPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQI 423 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERD 186 + + + L ++ + +L L D E+ Sbjct: 424 TLPLDEVVYGKGAKKIIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQP 483 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + G +++ + +Q ++L ++I +L + L + LF Sbjct: 484 LAAVLAKMEIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILF 542 Query: 247 LITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + T +L IL + + L + + Sbjct: 543 EKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILE 602 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DG++ ++TGR S QN+P Sbjct: 603 DGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQG 637 Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN Sbjct: 638 RLIRKAFVPEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIE 697 Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V+ R K + + Y L + + + FE + + Sbjct: 698 KPEDVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIK 752 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSI 538 + + + + + L R + + ++ + Sbjct: 753 DYMERVVREARDKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQG 803 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 SA + + + + Q + Y K+ Sbjct: 804 SAADILKIAMIHLD---------------------------------QALEAGAYKTKM- 829 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + IVL V P ++ L M Sbjct: 830 ---------------LLQVHDE---IVLQV--------PTDELAAIKALVKETMESAIEL 863 Query: 658 AKGLPLKAEGYEAKRY 673 A +PL+A+ E K + Sbjct: 864 A--VPLEADENEGKTW 877 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 102/679 (15%), Positives = 199/679 (29%), Gaps = 152/679 (22%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + +E V + T + + L + E V +N+ R + G ++ Sbjct: 469 FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELSGT-VRDV 526 Query: 97 SVLARTNGLPSS-LKNAC---LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRA 150 ++L +S LK A L +S + GK +A + Sbjct: 527 NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586 Query: 151 NH----------------VQAWQLFGEYCKRDVE-----ATRELFKRLIPLSDGERDLWL 189 + +Y ++ + ++R+ L D E L Sbjct: 587 AASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVEYRRVGSLLDMELPLSR 646 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 L + + D G +D L+ + + ++ E K+ + + + + L+ LF Sbjct: 647 LLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDVLFNQL 705 Query: 250 GIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 G+ ++ T L + + L+ R S + + L + ++SDG Sbjct: 706 GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDRIASDG 763 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T A TGR S QN+P Sbjct: 764 RIHTTFGQTVA-ATGRLSSLDPNLQNIP------------------------ARTDDGAR 798 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA L+ AD + IE R++A ++G++ I AF +GED++ + A F + Sbjct: 799 IRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAPE 858 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 V+ QR K L GL Sbjct: 859 AVTATQRTHVKATSYGL--------------AYGLS------------------------ 880 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A + ++ + + + + ++ V + + V Sbjct: 881 ------AFGLAGQLRISQGEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMW---- 930 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 RR ++ + + + Sbjct: 931 ----------------------GRRRYLPGLRATNRVVAENARRA---------ALNAPI 959 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + D++ + M G I+L +HDE+V E ++ + MT Sbjct: 960 QGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAMTSVV 1019 Query: 656 SWAKGLPLKAEGYEAKRYR 674 +PL+ +R Sbjct: 1020 E--LRVPLEVSVGVGANWR 1036 >gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591] gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68] gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591] Length = 878 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 93/672 (13%), Positives = 180/672 (26%), Gaps = 147/672 (21%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77 I AW D+ + L +L ++T+ ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374 Query: 78 I---LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKAL 131 + I +P + + + +SL S + GK Sbjct: 375 KRGKVLLDRKEITLPPATF-DSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKG- 432 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLL 190 + A ++ + T E ++L L D E L + Sbjct: 433 --------AKLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANV 484 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +++ + + +Q +L ++I +L + L LF G Sbjct: 485 LAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEEMG 543 Query: 251 ID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + T +L IL + + L +A+ DG++ Sbjct: 544 LPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKI 603 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 ++TGR S QN+P +R Sbjct: 604 HTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLEQGRLIR 638 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DK 423 + S L+ +D + IE RVLA I+ + I+AF G DI+ +T + F + Sbjct: 639 KAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAED 698 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ R K + + Y L + + + FE + +++ Sbjct: 699 VTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYME 753 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARR 542 + + + + + EL + ++ + SA Sbjct: 754 TIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPIQGSAAD 804 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + V + + + T G T ++ Sbjct: 805 ILKVAMINLDK------------------------------------ALTEAGLATRMLL 828 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGL 661 Q IVL E P +V + M S + Sbjct: 829 Q-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAIS--LSV 862 Query: 662 PLKAEGYEAKRY 673 PL A+ E + Sbjct: 863 PLIADENEGSTW 874 >gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515] gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515] Length = 880 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 90/691 (13%), Positives = 186/691 (26%), Gaps = 156/691 (22%) Query: 9 ETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRD 63 E S +G + E L AW + T ++ + + L Sbjct: 316 EMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSDVSLLQEALFKKALSK 369 Query: 64 ETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL--N 117 + ++ + ID+P + T + +L + L N Sbjct: 370 P--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN 421 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 GK + + + K V++ + ++L Sbjct: 422 LPLDTDDAVYGKGAKR--------------AIPEKTRFLEHLAKKVKVLVDSEANIMQQL 467 Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E+ L + + RG ++ + + ++ + + L ++I +L Sbjct: 468 KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQE 527 Query: 232 IRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G+ T +L IL + Sbjct: 528 F-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITK 586 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + + DG++ ++TGR S QN+P Sbjct: 587 LQSTYIIGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP--------------- 630 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + S L+ +D + IE RVLA I+ ++ I AF G Sbjct: 631 ---------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEG 681 Query: 406 EDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DI+ +T + F + V+ R K + + Y L + + Sbjct: 682 ADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNLGIPRKLA 736 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + FE + +++ + + + + L R + ++ Sbjct: 737 KQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR---------RRSLPDINSRNFNI 787 Query: 525 TEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + SA + + + + R Y Sbjct: 788 RQFAERTAINSPIQGSAADILKIAMINLDR-----------------------VLYKGGY 824 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 S++ + IVL E P+ + Sbjct: 825 KSKM--------------------------LLQVHDE---IVL--------EVPNEEIGA 847 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + L M S +PL A+ + + Sbjct: 848 IKELVTKTMESAIS--LSVPLIADENAGETW 876 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 97/647 (14%), Positives = 180/647 (27%), Gaps = 119/647 (18%) Query: 37 WDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + + A L ++L+D V H G+ + Sbjct: 338 VRNNGAAYIELAGLDAAAESVLARWLQDPEEAKVLHEFKSALKALHN-RGLGLEGV-VDD 395 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 TS+ + ++ K+ A S D A + Sbjct: 396 TSISGYLIQPDRRSYDLAE---LAQVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQ 452 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 + E K L+ E + + + G + D + + + + Sbjct: 453 HAAVVHALSKHFEKELAEIKADALLTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTK 512 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHS 268 + E + + L+ LF G+ + +LK +L + Sbjct: 513 VIENAQEQAFAAIGHEV-NLGSPKQLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKT 571 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L L+ +R +S + + TL ++V+ D R+ T A TGR S Q Sbjct: 572 GHEFLV-QLMAHRESSKLAQ--MVETLKKSVADDARIHTTYAQNIA-ATGRISSNNPNLQ 627 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEAR 387 N+P VRS + S G L+ AD + IE R Sbjct: 628 NIP------------------------VRSEEGRRVRSIFMVSEGYECLLSADYSQIEMR 663 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 ++A ++G+ I+A+ +GED++ A+ FN +V+ R+ K M L Y Sbjct: 664 IMAHLSGDQALIQAYKDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMSYGLAYG----- 718 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + L++ ++ + ++ ++DQ + G Sbjct: 719 LTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDGVRDQARVDGYTATIEGR------ 772 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R + + E + Sbjct: 773 ---RRYLPDLTSTNRQAREAAERIA----------------------------------- 794 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + ++ + +R G E Q L M L Sbjct: 795 ---------LNSPIQGSAADIIKRAMLGVSAELASQG-----LKSRML----------LQ 830 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE+V E +V L M +PL + + Sbjct: 831 VHDELVLEVAPGEREAVEKLVIEQMGSAAE--LSVPLDVQIGVGSSW 875 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 102/679 (15%), Positives = 198/679 (29%), Gaps = 152/679 (22%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + +E V + T + + L + E V +N+ R + G ++ Sbjct: 469 FREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELSGT-VQDV 526 Query: 97 SVLARTNGLPSS-LKNAC---LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRA 150 ++L +S LK A L +S + GK +A + Sbjct: 527 NLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAV 586 Query: 151 NH----------------VQAWQLFGEYCKRDVE-----ATRELFKRLIPLSDGERDLWL 189 + +Y ++ + ++R+ L D E L Sbjct: 587 TASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDMELPLSR 646 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 L + + D G +D L+ + + ++ E K+ + + + + L+ LF Sbjct: 647 LLERMEDTGIAVDEGLLQRFDQELSSEVKRTETAAFEAIGREV-NLSSPKQLQDVLFNQL 705 Query: 250 GIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 G+ ++ T L + + L+ R S I + L + ++ DG Sbjct: 706 GLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQI--VRNLGDRIAPDG 763 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T A TGR S QN+P Sbjct: 764 RIHTTFGQTVA-ATGRLSSLDPNLQNIP------------------------ARTDDGAR 798 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA L+ AD + IE R++A ++G++ I AF +GED++ + A F + Sbjct: 799 IRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAPE 858 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 V+ QR K L GL Sbjct: 859 AVTATQRTHVKATSYGL--------------AYGLS------------------------ 880 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A + ++ + + + + ++ V + + V Sbjct: 881 ------AFGLAGQLRISQGEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMW---- 930 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 RR ++ + + + Sbjct: 931 ----------------------GRRRYLPGLRATNRVVAENARRA---------ALNAPI 959 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + D++ + M G I+L +HDE+V E ++ + MT Sbjct: 960 QGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEAMTSVV 1019 Query: 656 SWAKGLPLKAEGYEAKRYR 674 +PL+ +R Sbjct: 1020 E--LRVPLEVSVGVGANWR 1036 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 106/667 (15%), Positives = 178/667 (26%), Gaps = 141/667 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 A A +D T L +L D H + G + Sbjct: 354 WGVAVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALHAAKEASHALA---GRGLD 410 Query: 90 SKRW-ICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARF-CKGSIDSPP 144 + T + A L + + E A D Sbjct: 411 LEGVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSSAGQGALDLEVDGADEGR 470 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 RA V+ D AT L SD E L + + G ID Sbjct: 471 RAAVRAAAVRDLVDVLGGEVADRGATTLL-------SDLELPLQAVLARLERTGIAIDHA 523 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD---MSEGTL 261 + L+ + + D + + + L+ LF + T Sbjct: 524 YLSGLEREFDGQVQGAAADAYAVIGREV-NLGSPKQLQEVLFDQLRMPKTKRIKTGYTTD 582 Query: 262 KSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 + L+ + L+ +R A + L +V+ DGR+R T Q A TG Sbjct: 583 ANALTDLFARTGHPFLEHLLAHRDAIRLRQT--VEGLLRSVADDGRIRTTFQQTIA-ATG 639 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLV 377 R S QN+P A +R + G L+ Sbjct: 640 RLSSADPNLQNIP------------------------IRTDAGRQIRRAFVVGPGYATLL 675 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R++A ++G++ I AF +GED++ ++ F P D+V+ R+ K M Sbjct: 676 TADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSY 735 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 L Y + L ++ Sbjct: 736 GLAYG-----LSSYGLSQQLAIEVS----------------------------------- 755 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + GV + + + Sbjct: 756 ----EAAALMTDYFERFGGVRDYLTGVVDQARATGYTATVL------------------- 792 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RR D+ D A ++ +Q + D++ M Sbjct: 793 -------GRRRYLPDLTSDNRQRREAAERM---------ALNAPIQGSAADLIKVAMLGV 836 Query: 618 T----KNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN----PSWAKGLPLKAE 666 + G ++L VHDE+V E + V L M P +PL Sbjct: 837 DGELTRRGLRSRMLLQVHDELVLEVAEGEREEVEELVRTQMAAAGSGLPDGPLDVPLDVS 896 Query: 667 GYEAKRY 673 + + Sbjct: 897 VGVGESW 903 >gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3] gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3] Length = 878 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 89/678 (13%), Positives = 183/678 (26%), Gaps = 159/678 (23%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77 I AW D+ + L +L ++T+ ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374 Query: 78 I---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134 + I +P + +R L + + L + Sbjct: 375 KRGKVLLDRKEITLPPATFD-----SR----------LAKYLLSTVEDNSLTTIANLYGQ 419 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------E 184 ++ + + + ++F + R V+ E + ++ + E Sbjct: 420 TSLVPDEAIYGKGAKLDLPE-REIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDME 478 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + G +++ + + +Q +L ++I +L + L Sbjct: 479 LPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTI 537 Query: 245 LFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF G+ T +L IL + + L +A+ Sbjct: 538 LFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAI 597 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DG++ ++TGR S QN+P Sbjct: 598 LEDGKIHTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLE 632 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S L+ +D + IE RVLA I+ + I+AF G DI+ +T + F Sbjct: 633 QGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFG 692 Query: 419 TPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + V+ R K + + Y L + + + FE + Sbjct: 693 IEKAEDVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPG 747 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 +++ + + + + + EL + ++ + Sbjct: 748 IKNYMETIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPI 798 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + V + + + T G Sbjct: 799 QGSAADILKVAMINLDK------------------------------------ALTEAGL 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 T ++Q IVL E P +V + M Sbjct: 823 ATRMLLQ-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAI 858 Query: 656 SWAKGLPLKAEGYEAKRY 673 S +PL A+ E + Sbjct: 859 S--LSVPLIADENEGSTW 874 >gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14] Length = 878 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 92/672 (13%), Positives = 180/672 (26%), Gaps = 147/672 (21%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77 I AW D+ + L +L ++T+ ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLENQTIK------TYDF 374 Query: 78 I---LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKAL 131 + I +P + + + +SL S + GK Sbjct: 375 KRGKVLLDRKEITLPPATF-DSRLAKYLLSTVEDNSLTTIANLYGQISLVPDEAVYGKG- 432 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLL 190 + A ++ + T E ++L L D E L + Sbjct: 433 --------AKLDLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANV 484 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +++ + + +Q +L ++I +L + L + LF G Sbjct: 485 LAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGIILFEEMG 543 Query: 251 ID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + T +L IL + + L +A+ DG++ Sbjct: 544 LPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKI 603 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 ++TGR S QN+P +R Sbjct: 604 HTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLEQGRLIR 638 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DK 423 + S L+ +D + IE RVLA I+ + I+AF G DI+ +T + F + Sbjct: 639 KAFVPSLENSVLLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAED 698 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ R K + + Y L + + + FE + +++ Sbjct: 699 VTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYME 753 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARR 542 + + + + + EL + ++ + SA Sbjct: 754 TIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPIQGSAAD 804 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + V + + + T G T ++ Sbjct: 805 ILKVAMINLDK------------------------------------ALTEAGLATRMLL 828 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGL 661 Q IVL E P +V + M S + Sbjct: 829 Q-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAIS--LSV 862 Query: 662 PLKAEGYEAKRY 673 PL + E + Sbjct: 863 PLIVDENEGPTW 874 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 182/656 (27%), Gaps = 130/656 (19%) Query: 35 YAWDDEPVKLWDRT----EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A D+ A +L D T H + + + + G ++ Sbjct: 370 IAAPDDEGGYIALETLTPHDEAALG---AWLADATRPKAVHEAKWAMHGLE-SRGWEL-G 424 Query: 91 KRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 T++ A +L + + E + G D + Sbjct: 425 GLTSDTAIAAYLVRPGQRSFNLDDLSVRYLHRELRVESAAGDD-TQLSLLDDPDDSAAEK 483 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + ++A + D E ++ + L + E L + + G +D D + Sbjct: 484 AQQQILRARAVVDLAAALDEELE-KIESK-PLLEEMELPLLRVLGVMEATGIAVDTDHLE 541 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGT 260 L + + E G + L++ LF G+ Sbjct: 542 SLHSDFSDRI-RAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKTKTGYTTDAAA 600 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+++ L +L ++ + + L +AV+SDGR+ T A TGR Sbjct: 601 LEALYEKEPHPFL--QYLLEHRDATRLKVT-VEGLLKAVASDGRIHSTFNQTVA-ATGRL 656 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P A +R +A G L+ A Sbjct: 657 SSTDPNLQNIP------------------------VRTEAGRQIRHAFVAGEGYETLMTA 692 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ AKAF PID+V+ + R K M L Sbjct: 693 DYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAFGVPIDEVTPDMRRRVKAMSYGL 752 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + + + + F + + + + + + Sbjct: 753 AYG-----LSAFGLAAQLKISRDEAKDQMEAYFARFGGVRDYLQDVVTEATRNEYTETIF 807 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDV 558 G R + + E + SA + V + + + R Sbjct: 808 GR---------RRYLPDLTSTNRMRRESAERMALNAPIQGSAADIIKVAMINLDKQIR-- 856 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + + + Sbjct: 857 -----------------------------------------------AAGLTSRMLLQVH 869 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E + L M +PL+ + + Sbjct: 870 D-----------ELVLEVAAGERDELEKLVRDTMGTAAE--LSVPLEVSVGYGRSW 912 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 75/498 (15%), Positives = 131/498 (26%), Gaps = 107/498 (21%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E L + + G D + + + +KL I + + L Sbjct: 458 KIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYEAAGEEF-NVNSPKQL 516 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF G+ ++ T +L + IL S L L Sbjct: 517 GVILFEKMGMPAGKKTKNGYSTAADVLEMLAKSYPFVKDILEYRTISKLISTYLEALPLL 576 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + GR+ + + TGR S QN+P Sbjct: 577 IRPETGRIHTSFNQTV-TATGRLSSSDPNLQNIP------------------------VR 611 Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +RS + G + +D + +E RVLA ++G++ I+AF N EDI+ T A+ Sbjct: 612 TAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRTAAEV 671 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 P ++V+ EQR+ K + + Y L + + FE + Sbjct: 672 LGIPFEEVTSEQRSHAKAVNFGIIYG-----ISDFGLANQLGISRGEAGTYIKKYFERYP 726 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + M + E L G EL + + Sbjct: 727 YIHAFMKSMVEDAQESGRAKTLFGRYREL---------PDIRSSNFNRRSFAERTAMNTP 777 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 +L +V + Sbjct: 778 IQGTAADI---------------------MKLAMIEVSRRIKEEGYKSRV---------- 806 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 + E+V E ++ T L M Sbjct: 807 -----------------LLQVHD-----------ELVVEAVSEEKENLKTLLKETMESVV 838 Query: 656 SWAKGLPLKAEGYEAKRY 673 +PL A+ +E K + Sbjct: 839 E--LKVPLIADVHEGKNW 854 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 103/684 (15%), Positives = 201/684 (29%), Gaps = 153/684 (22%) Query: 33 CAYA-WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 + A + +E V + T + + L + E V +N+ R + G ++ Sbjct: 464 VSLALFREEAVLVTPSTLRPESENVLRDFFAAENRTVVVYNAKALRHAL-RAYGWELSGT 522 Query: 92 RWICTSVLARTNGLPSS-LKNAC---LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPY 145 ++L +S LK A L +S + GK +A + Sbjct: 523 -VQDVNLLDYLADPDASRLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAA 581 Query: 146 DCTRANH----------------VQAWQLFGEYCKRDVE-----ATRELFKRLIPLSDGE 184 + +Y ++ + ++R+ L D E Sbjct: 582 GAAAVTASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLPILTEQVKYRRVGSLLDME 641 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L L + + D G +D L+ + + ++ E K+ + + + + L+ Sbjct: 642 LPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREV-NLSSPKQLQDV 700 Query: 245 LFLITGIDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEA 298 LF G+ ++ T L + + L+ R S + + L + Sbjct: 701 LFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQALLYFRDRSKLLQV--VRNLGDR 758 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++SDGR+ T A TGR S QN+P Sbjct: 759 IASDGRIHTTFGQTVA-ATGRLSSLDPNLQNIP------------------------ART 793 Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA L+ AD + IE R++A ++G++ I AF +GED++ + A F Sbjct: 794 DDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVF 853 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + V+ QR K L GL Sbjct: 854 GVAPEAVTATQRTHVKATSYGL--------------AYGLS------------------- 880 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 A + ++ + + + + ++ V + + V Sbjct: 881 -----------AFGLAGQLRISQGEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETM 929 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 RR ++ + + Sbjct: 930 W--------------------------GRRRYLPGLRATNRVVAENARRA---------A 954 Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 +Q + D++ + M G I+L +HDE+V E ++ + Sbjct: 955 LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVTEA 1014 Query: 651 MTKNPSWAKGLPLKAEGYEAKRYR 674 MT +PL+ +R Sbjct: 1015 MTSVVE--LRVPLEVSVGVGANWR 1036 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 93/665 (13%), Positives = 186/665 (27%), Gaps = 145/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + A V E + + L + E + +N + GI Sbjct: 328 KLEGLALTQGSG-VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIV 385 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLT-KMEEGKALIA---RFCKGSID 141 I + L + + RF K + Sbjct: 386 IREI--------SYDL-------ALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEWGN 430 Query: 142 SPPYDCTRANHVQAW-QLFGEYC--KRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197 S + + F Y +D K L + D E L + ++ Sbjct: 431 SGLPIGRLPEQPEQYFGEFVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLFSMERA 490 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D++ + L+ L E L E+I L+ + + L L+ G+ +D + Sbjct: 491 GVPLDVEELAILEALFETELAVLTEEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKA 549 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 + T +L + +L + L + V R+ + GA Sbjct: 550 KSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTGA-V 608 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKK 375 TGR + QN+P +R + Sbjct: 609 TGRLACRDPNLQNIP------------------------IRSERGILLRKAFRLSEKNSY 644 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ + AF +GEDI+ T ++ F+ P+++VSKEQR K + Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Q A Sbjct: 705 NFGIV--------------------------------------------YGQQAFGLAKV 720 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ + + +A+ +++ + ++ + A ++ + R+ + Sbjct: 721 LKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDS-------WN 773 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 S R +Q + +++ M Sbjct: 774 EFPGSRAASGRF-----------------------------AVNTRIQGSAAELIKLAML 804 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + + ++L +HDE++ E P+ + L M + +P+ Sbjct: 805 DISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIVVNIL 862 Query: 669 EAKRY 673 K + Sbjct: 863 IGKNW 867 >gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] Length = 858 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 84/654 (12%), Positives = 169/654 (25%), Gaps = 156/654 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + ++ + + ++ + L V+ + HN R +F I+ Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + GK + + + + Sbjct: 384 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 421 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + E +++R L + + G +++ + +L + Sbjct: 422 TLIAIHEKLKQRLFQEKLLTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 475 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKS 263 Q L+++I L G + L LF G+ + L++ Sbjct: 476 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEA 534 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + ILN S + L + V DGR+ + A+ TGR S Sbjct: 535 LEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFS-TTATATGRLSS 590 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R IA G K++ AD + Sbjct: 591 SNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADYS 626 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A +AFANG+DI+ T + F Sbjct: 627 QIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV----------------------- 663 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + ++ + + A + + Sbjct: 664 -----------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + + + Sbjct: 701 AAEYINYYFSCYPEIKAYMEKAVSIARLHGY--------------------------VET 734 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNG 621 RR D+ Y+ R Q + DI+ + Sbjct: 735 LFGRRCFVRDINNTIPYIRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQLK 785 Query: 622 Y-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 I+L VHDE++ E D + + +M +PL+ E + Sbjct: 786 VGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNW 837 >gi|242080755|ref|XP_002445146.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor] gi|241941496|gb|EES14641.1| hypothetical protein SORBIDRAFT_07g004810 [Sorghum bicolor] Length = 1178 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 95/803 (11%), Positives = 191/803 (23%), Gaps = 194/803 (24%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA------------ 52 D E + + + + V+ D Sbjct: 432 ACDTE----VANIEAKEETPVGHGEVICFSIYSANSDVQAADFGNGKTCIWVDVLDGGRG 487 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---- 108 + + + D ++ V HN F+ + + GI + R T LAR Sbjct: 488 VLMEFAPFFEDPSIKKVWHNYSFDNHVIENY-GIKVAGFR-ADTMHLARLWDSSRKIDGG 545 Query: 109 ------------LKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + L + K G+ + + D + + Sbjct: 546 YSLEGLTNDRRVMDTVPEDLPKPGKISMKTIFGRKKVRKDGSEGK-VVSIDPVKELQRED 604 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD------------GERDLWL--------LDQTIN 195 +L+ Y D +T L++ L + D + L + Sbjct: 605 RELWICYSSLDSMSTLRLYESLKRKLETRRWVLDGCPRGTMYDFYEQYWCPFGALLVKME 664 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246 G +D + ++++ ER+ + K D + +R LF Sbjct: 665 TEGMLVDRGYLSEIEKAAIAERELAADKFRKWASKYCPDAKYMNVNSDTQIRQLLFGGIE 724 Query: 247 --LITGIDLV------------------DMSE-------GTLKSILSHSNIT--QLAKDL 277 +G S+ ++ + + + Sbjct: 725 NRHKSGETWPQSKTFKVLNEENVATEGKKTSKYRTIKLCSIVEDLKTDMFTPSGWPSASG 784 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR------------------ 319 R + + T+ + D G+ G S G Sbjct: 785 DALRSLAGKIPTEYIYTMGDIQEDDEDSSGSENPDGDSSYGTAYEAFGGGKNGKEACHAI 844 Query: 320 -WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC--------------- 363 + +L + A R + Sbjct: 845 AALCEICSIDSLISNFILPLQGDRISCAEGRIHCSLNINTETGRLSARTPNLQNQPALEK 904 Query: 364 ----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A+ G L+VAD +E R+LA + + AF G D + T + Sbjct: 905 DRYKIRQAFVAAPGNSLIVADYGQLELRILAHLTNCKSMLDAFKAGGDFHSRTAMNMYQH 964 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 D V + KV G + + + Sbjct: 965 IRDAVHE------------------KKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKML 1006 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + K+ K W + VL K + + + Sbjct: 1007 NFSIAYGKTALGLSRDWKVSVKEARDTLKLWYGDRKEVLAWQKSQKKLAREKCEVYTLL- 1065 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R + ++ + + R Sbjct: 1066 -------------------------GRSRHFPNL---TQFGPGQRGHIERAAINAP---- 1093 Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 VQ + D+ M + G+ ++L VHDE++ E P + M+ Sbjct: 1094 --VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPSESAEVAKAIVVECMS 1151 Query: 653 KNP--SWAKGLPLKAEGYEAKRY 673 K + + L + AK + Sbjct: 1152 KPFHGTNILKVDLAVDAKCAKSW 1174 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 101/678 (14%), Positives = 173/678 (25%), Gaps = 145/678 (21%) Query: 14 QPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQSAMPSD-LLQYLRD 63 L K + AV A D E D A L +L D Sbjct: 324 NWLKKNAAYQEGRDAVAEALAVDIDGETLGLLSAENKGLKLDLAALDAKDEQVLRTWLAD 383 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 H+S + G + TSV A L Sbjct: 384 RGAPKWFHDSKQSFHAL-RQQGFALDGVE-HDTSVAAYL---------------VRPDLR 426 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G L + ++ + + + E T L Sbjct: 427 SWSLGDVLQRHAGRDLPENSGSLERAQAVRELVGIMNQ------ELTDAGQAELY--FSM 478 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + RG +D + +L + +L + + L+ Sbjct: 479 EVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQK 538 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSN---ITQLAKDLILNRLASSGSAILKLNTLSE 297 LF G+ ++ T + L L+ +R + ++ L Sbjct: 539 VLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKST--IDGLIN 596 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 A+ DGR+R T GA TGR S QN+P Sbjct: 597 AIDGDGRIRTTFNQKGA-ATGRLSSSEPNLQNIP------------------------VR 631 Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 A +RS G L+ AD + IE RV+A ++ + I+A+ GED++ ++ Sbjct: 632 TEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYVGSRV 691 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F+ P+D+V+ E R K + L Y L + + F+ + Sbjct: 692 FDVPVDEVTPELRRRVKALSYGLVYG-----LSAFGLSQQLGISPGEAKGIMENYFDRFG 746 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + E + L G R + + E Sbjct: 747 GVKRYLDKVVEAAKETGYTETLYGR---------RRYLPELASSNRVARENAERAALNAP 797 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 +L R L +++K Sbjct: 798 IQGTAADIIKL------------AMLRVDRALRNANLKSRV------------------- 826 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNP 655 + E+V E + L M Sbjct: 827 -----------------LLQVHD-----------ELVLEIAPGELEQIQQLLEENMDSAA 858 Query: 656 SWAKGLPLKAEGYEAKRY 673 S +PL + + Sbjct: 859 S--LRVPLDVSAGHGENW 874 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 234 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 90/676 (13%), Positives = 170/676 (25%), Gaps = 129/676 (19%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 RS + + GV+ + L A A V+ SA +++L L V Sbjct: 330 RSAERIAVAGVFEGTAPF-LNLVALALSYGDVRGV-LHASSAHFAEVLSIL--SERPVVL 385 Query: 71 HNSLFERILFKKTL--GIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKM 125 ++ + G+ + ++ SL A A E Sbjct: 386 WDAK-------RYAQAGVTL-GTEVFDFALADYLLRPEERQRSLDRAASAY-LDELSAPQ 436 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 ++ + P + + Y +L + E Sbjct: 437 TAEDRTLSAAYAHLANGAPLHNEQTAFYEVILAARLYAPTSAALADAKLTKLY--GEIEL 494 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + G ++ +++ + ++++DI L + L L Sbjct: 495 PLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGTEF-NISSPKQLGEVL 553 Query: 246 FLITGIDLVD-----MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 F G+ T +L D +L S L + + Sbjct: 554 FDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGALIR 613 Query: 301 SD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 D GR+ + + TGR S QN+P Sbjct: 614 PDTGRVHTSFNQTV-TATGRLSSSDPNLQNIP------------------------VRTE 648 Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 VR+ G L+ AD + IE R+LA ++G++ I AF G+DI+ T ++ F Sbjct: 649 EGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFG 708 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P+ +V+ QR K + + Y L + + FE + Sbjct: 709 VPLAEVTSAQRRSAKAVNFGIVYG-----LSDYGLSQDLGIPRKEAAGYIERYFERYHGV 763 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + L G R + + Sbjct: 764 RAFLDRVVADAHTNGFVTTLYGR---------RRALPAINSRNFMQRSNAERMAMNTPIQ 814 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 ++ + Sbjct: 815 GTAADLI---------------------KIAMIRADAALRAAGVKSRI------------ 841 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + E+V E + V L + M+ Sbjct: 842 ---------------LLQVHD-----------ELVLEVVNDEIAQVTELLTAAMSGAAQL 875 Query: 658 AKGLPLKAEGYEAKRY 673 A +PL + + K + Sbjct: 876 A--VPLAVDVHTGKNW 889 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 89/644 (13%), Positives = 166/644 (25%), Gaps = 131/644 (20%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D T ++ D V HN+ +F + G + T++ A Sbjct: 382 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 439 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L+ +A ++ + Sbjct: 440 VKPGRRSFALDALSVEYLHRELVPA---AADGQLAFGTDEHAEADALMAQARAVLDLGDA 496 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F + L D E L + G D + ++ L A + Sbjct: 497 FTARLEEVGATEL--------LHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQ 548 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271 + ++ + L+ F + L + + Sbjct: 549 QAVKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHE 607 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L +R + + + L + V++DGR+ T A TGR S QN+P Sbjct: 608 LPVIML-RHREQARLRST--VEGLIKTVAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP 663 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390 +R + G + L+ AD + IE RV+A Sbjct: 664 ------------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 699 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ ++ I+AF +GED++ T ++ F +V E R K M L Y Sbjct: 700 HLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYG-----LSA 754 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L+++ + FE + + + D+ ++G Sbjct: 755 FGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGR--------- 805 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + E + A++ ++ M R R + SSR L Sbjct: 806 RRYLPDLNSDNRQRREAAERMALNAPIQGTA--ADIVKIAMLRVDRALREAGLSSRLL-- 861 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 Sbjct: 862 --------------------------------------------LQVHDE---------- 867 Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 IV E V T+ M+ + PL + Sbjct: 868 -IVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 908 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 89/665 (13%), Positives = 184/665 (27%), Gaps = 145/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + A V E + + L + E + +N + GI Sbjct: 328 KLEGLALTQGSG-VFFIALEEEGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIV 385 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLAL--NFSEHLT-KMEEGKALIA---RFCKGSID 141 I + L + + RF K + Sbjct: 386 IREI--------SYDL-------ALAEHLTNGGGKISFQSLLVNHGFTETAHRFAKEWGN 430 Query: 142 SPPYDCTRANHVQAW---QLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197 + + + +D K L + D E L + ++ Sbjct: 431 LGLPIGRLPEQPEQYFGELVAYLPIIKDAILEEINRKNLNHILSDIEMPLEKVLVSMERA 490 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D++ + L+ L E L E+I L+ + + L L+ G+ +D + Sbjct: 491 GVPLDVEELAILEALFETELAVLTEEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKA 549 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 + T +L + +L + L + V R+ + G + Sbjct: 550 KSTRAEVLEALRSEHPIIEKLLAFRTIEKLLSTYVKALPKQVDSHTQRIHPSFDQTG-TV 608 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKK 375 TGR + QN+P +R + Sbjct: 609 TGRLACRDPNLQNIP------------------------IRSERGILLRKAFRLSEKNSY 644 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ + AF +GEDI+ T ++ F+ P+++VSKEQR K + Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Q A Sbjct: 705 NFGIV--------------------------------------------YGQQAFGLAKV 720 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ + + +A+ +++ + ++ + A ++ + R+ + Sbjct: 721 LKISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDS-------WN 773 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 S R +Q + +++ M Sbjct: 774 EFPGSRAASGRF-----------------------------AVNTRIQGSAAELIKLAML 804 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + + ++L +HDE++ E P+ + L M + +P+ Sbjct: 805 DISQAIKQQQMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMT--LSVPIAVNIL 862 Query: 669 EAKRY 673 K + Sbjct: 863 IGKNW 867 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 96/620 (15%), Positives = 178/620 (28%), Gaps = 138/620 (22%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARF 135 +LG+D+ K T + L+ K EE + Sbjct: 472 LFASLGVDL-PKPLFDTKLAGYLVQPDFHADTLEQAAARFLDI-HVEEKTEEATQGLLDL 529 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 G+ + T A + + + L L E + + + Sbjct: 530 DDGADADADGNQTSTLLQHAAIIAELARALAPQIDQREQFGL--LQRMELPVSHVLYGME 587 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 +G ++D+ + +++ A + ++ ++I G + + L LF G+ Sbjct: 588 SQGAKVDMQRLTSMRDTFAADARQA-QEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTK 646 Query: 256 MSEG----TLKSILSHSNITQ--------LAKDLILNRLASSGSAILKLNTLSEAVSS-D 302 ++ T L T L+ +R + I + TL +A + D Sbjct: 647 RTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHRETNKLKQI--VATLIDATNPAD 704 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 R+ T + A TGR S QN+P A Sbjct: 705 ERIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAAGR 739 Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +RS + G + L+ D + +E R++A ++G++ I+AF +G D + + P+ Sbjct: 740 EIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVPV 799 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D+++ +QR+ K M L Y GL Sbjct: 800 DQITPDQRSHVKAMSYGLAYGLS---------SYGL------------------------ 826 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A + K+ + E +K + A V + Sbjct: 827 -----------AQQLKIRPSEAEALKAKYFATFGKVHDFLESCVSEARKRGYTETMF--- 872 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 RR + +K A + Sbjct: 873 -----------------------GRRRYFPALKSTNRAARDAAERAA---------LNAP 900 Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN 654 +Q + DI+ M A + I+L +HDE+V E V L M Sbjct: 901 IQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVRDAMENA 960 Query: 655 PSWAKGLPLKAEGYEAKRYR 674 +PL ++ Sbjct: 961 VH--LDVPLDVSTGVGADWQ 978 >gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] Length = 341 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 33/315 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ++ ID+ET S + K GV+ YAE I L A + D V ++D +P ++L Sbjct: 4 IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 + + V+ A N+ FERI + G + W CT + + Sbjct: 64 DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAW 156 GLP SL+ L + KM+EGK LI F CK + + H + W Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQ--KMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKW 181 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 +F Y KRDVE + ++L P+ D + +LLDQ INDRG +DL +V Sbjct: 182 TVFKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDE 241 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + + +++ L I + ++ +L GI++ + + + ++ + + Sbjct: 242 RSKATITDEM--LGLTDIDNPNSVSQMKSWLSD-QGIEVESLGKKVVAEMIKDA--PEDL 296 Query: 275 KDLILNRLASSGSAI 289 ++ R + S++ Sbjct: 297 AQVLSLRQQLAKSSV 311 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 192/656 (29%), Gaps = 129/656 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A D++ V D Q + + L + + + +N + K GI I Sbjct: 328 LMGVALACDEQ-VYYVDIEHAQDDVITPLRDFFKRKDTEFYGYNIKRDNHALKNA-GIHI 385 Query: 89 PSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + ++ + S + + E K GK Sbjct: 386 HNITL-DLALAEHLINGGAKISYQTLLVDHGLVESAGKY--GKEWGQLSLPILKSPAKPA 442 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 V + +++ + L + E L + TI G +D++ + Sbjct: 443 EYFGEFVSHLPKIKKSLLEELKV-KGLEDLFFNM---EMPLEKVLFTIERNGMPLDVEDL 498 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L+ +++E L +DI G + + L L+ G+ +D + T +L+ Sbjct: 499 QELERTLSEELAILTDDIY-TVAGTSFNIKSPKQLSDVLYNKLGLTPIDKARSTKAEVLA 557 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + IL A + L + R+ T G + TGR + Sbjct: 558 ALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQDP 616 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGI 384 QN+P +R + AD + I Sbjct: 617 NLQNIP------------------------IRSERGRLLRKAFCDTRQNNYFLSADYSQI 652 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R LA ++ ++ AFA+ ED++ T ++ F+ P+++V+K+QR K + + Sbjct: 653 ELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII---- 708 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 Q + K+ + + Sbjct: 709 ----------------------------------------YGQQAYGLSKILKISVSEAQ 728 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + A+ ++ V + + ++ + Sbjct: 729 KLIDAYFDRYPAVARFINETINEA--------------------------CENLRVKTLL 762 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 R + N R + G +Q + +++ M Sbjct: 763 GR---------ERIIDNWTEFSNSRAAS-GRLAVNTRIQGSAAELIKLAMLQLAAALEKR 812 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L +HDE++ E P+ V TL +M +PL K + Sbjct: 813 KLRSRMLLQIHDELIFEVPEEEKEEVQTLVRDIMESAM--ILSVPLVVNILIGKNW 866 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 90/654 (13%), Positives = 164/654 (25%), Gaps = 149/654 (22%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID--IP 89 A A++ + + + + Q + + + ++ I Sbjct: 411 GIAVAFNGNE--YLYTGKPEDLAAHMAQT---GAISRI---IAPDVKALYRSHTSWRAIE 462 Query: 90 SKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 RW + A S + Sbjct: 463 VHRWFDLGLAAYLLNPEERDYSWTSLARR------------------------------A 492 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 Q +D A E + + E L + + RG RI+ Sbjct: 493 EEFGIDAQTPATLALTLAQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRAEF 552 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK 262 + +E +L +++ + G + R + L LF G+ ++ T + Sbjct: 553 SGFLAEVQKELDRLTQEVYAVAGGQF-NIRSSQQLGELLFGTLGLKAGSKTKGGQASTSQ 611 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 ++L D IL L L + R+ T A+ TGR S Sbjct: 612 AVLEKLAGKHPVIDTILEYRKLEKLRSTYLEPLPRLAQENDRIHTTFNQL-ATATGRLSS 670 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P G +R C A+ G KLV AD + Sbjct: 671 SQPNLQNIP------------------------VRGPMGQRMRRCFTAAPGNKLVAADYS 706 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++ + I++F EDI+ T ++ V+ +QR K + L Y Sbjct: 707 QIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTINFGLIYG 766 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G + L + F + + ++ E L G Sbjct: 767 MGPQKLAQE-----LKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAREHGFVTTLAGR- 820 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + L + Sbjct: 821 --------RRLLPEIHSDNNQLRSQARRQAINTVVQGS---------------------- 850 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 + +++ E + Q + I Sbjct: 851 ---------------------AADIIKIAMLKAAADETLQQLNAALI-----LQVHDE-- 882 Query: 623 DIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSW--AKGLPLKAEGYEAKRY 673 ++L E P + L +M+ A +PL + + Sbjct: 883 -LLL--------EAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNW 927 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 87/676 (12%), Positives = 182/676 (26%), Gaps = 152/676 (22%) Query: 27 QAVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-- 76 I +AW + ++L +T + V ++ Sbjct: 325 HFEIFGDNYHTEPIIGFAWGTKGQLYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFK 378 Query: 77 -RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + LGI + + + +R L + ++ +L ++ Sbjct: 379 RAKVLLSHLGITLQNPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQI 423 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERD 186 + + + L + + +L L D E+ Sbjct: 424 ALPLDEVVYGKGVKRAIPERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQP 483 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + G +++ + +Q ++L ++I +L + L + LF Sbjct: 484 LAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILF 542 Query: 247 LITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + T +L IL + + L + + Sbjct: 543 EKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILE 602 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DG++ ++TGR S QN+P Sbjct: 603 DGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQG 637 Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN Sbjct: 638 RLIRKAFVPEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIE 697 Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V+ R K + + Y L + + + FE + + Sbjct: 698 KPEDVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIK 752 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSI 538 + + + + + L R + + ++ + Sbjct: 753 DYMERVVREARDKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQG 803 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 SA + + + + Q + Y K+ Sbjct: 804 SAADILKIAMIHLD---------------------------------QALEAGAYKTKM- 829 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + IVL V P ++ L M Sbjct: 830 ---------------LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIEL 863 Query: 658 AKGLPLKAEGYEAKRY 673 A +PL+A+ E K + Sbjct: 864 A--VPLEADENEGKTW 877 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 89/644 (13%), Positives = 166/644 (25%), Gaps = 131/644 (20%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D T ++ D V HN+ +F + G + T++ A Sbjct: 353 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 410 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L+ +A ++ + Sbjct: 411 VKPGRRSFALDALSVEYLHRELVPA---AADGQLAFGTDEHAEADALMAQARAVLDLGDA 467 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F + L D E L + G D + ++ L A + Sbjct: 468 FTARLEEVGATEL--------LHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQ 519 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271 + ++ + L+ F + L + + Sbjct: 520 QAVKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHE 578 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L +R + + + L + V++DGR+ T A TGR S QN+P Sbjct: 579 LPVIML-RHREQARLRST--VEGLIKTVAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP 634 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390 +R + G + L+ AD + IE RV+A Sbjct: 635 ------------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 670 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ ++ I+AF +GED++ T ++ F +V E R K M L Y Sbjct: 671 HLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYG-----LSA 725 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L+++ + FE + + + D+ ++G Sbjct: 726 FGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGR--------- 776 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + E + A++ ++ M R R + SSR L Sbjct: 777 RRYLPDLNSDNRQRREAAERMALNAPIQGTA--ADIVKIAMLRVDRALREAGLSSRLL-- 832 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 Sbjct: 833 --------------------------------------------LQVHDE---------- 838 Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 IV E V T+ M+ + PL + Sbjct: 839 -IVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 879 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 89/644 (13%), Positives = 166/644 (25%), Gaps = 131/644 (20%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D T ++ D V HN+ +F + G + T++ A Sbjct: 374 WFDTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEH-GWRVDGITM-DTALAAYL 431 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L+ +A ++ + Sbjct: 432 VKPGRRSFALDALSVEYLHRELVPA---AADGQLAFGTDEHAEADALMAQARAVLDLGDA 488 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F + L D E L + G D + ++ L A + Sbjct: 489 FTARLEEVGATEL--------LHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQ 540 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNIT 271 + ++ + L+ F + L + + Sbjct: 541 QAVKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHE 599 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L +R + + + L + V++DGR+ T A TGR S QN+P Sbjct: 600 LPVIML-RHREQARLRST--VEGLIKTVAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP 655 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390 +R + G + L+ AD + IE RV+A Sbjct: 656 ------------------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 691 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ ++ I+AF +GED++ T ++ F +V E R K M L Y Sbjct: 692 HLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYG-----LSA 746 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L+++ + FE + + + D+ ++G Sbjct: 747 FGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGR--------- 797 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + E + A++ ++ M R R + SSR L Sbjct: 798 RRYLPDLNSDNRQRREAAERMALNAPIQGTA--ADIVKIAMLRVDRALREAGLSSRLL-- 853 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 Sbjct: 854 --------------------------------------------LQVHDE---------- 859 Query: 631 EIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 IV E V T+ M+ + PL + Sbjct: 860 -IVLEISPGERDEVETIVRREMSSAVELSA--PLDVSVGVGADW 900 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 87/667 (13%), Positives = 165/667 (24%), Gaps = 151/667 (22%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW +E L + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187 + + + + L K+ L L D E L Sbjct: 423 LETDEVVYGKGAKRAIPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G ++D + ++ KL +DI ++ + L + LF Sbjct: 483 ANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFE 541 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 G+ T +L IL + + L + + D Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 602 GKIHTRYMQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420 +R + S L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 637 LIRKAFVPSTKDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L + + + FE + ++ Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYIDTYFERYPGIKA 751 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + + L EL + ++ + Sbjct: 752 YMDNVVREAKDKGYVSTLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 ++ ++ T Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 + IVL V P ++ L M A Sbjct: 827 ------------MLLQVHDE---IVLEV--------PSDELLAMKALVKETMESAVELA- 862 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 863 -VPLIAD 868 >gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057] Length = 880 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 89/659 (13%), Positives = 177/659 (26%), Gaps = 147/659 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVGSSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTVLPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERENLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L + + + + FE + +++ + + Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREA 761 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPR 548 + + + R + ++ + SA + V Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAM 812 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + + R L + K Sbjct: 813 INLD-------------RALTEKNFKS--------------------------------- 826 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + IVL V P +V L M A +PL A+ Sbjct: 827 ---RMLLQVHDE---IVLEV--------PADELTAVRQLVKETMEAAIKLA--VPLVAD 869 >gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20] Length = 945 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 97/671 (14%), Positives = 178/671 (26%), Gaps = 144/671 (21%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 L + + D + D T +P D L + L D + ++ G+ + Sbjct: 387 LVSLS-DGSRAVVVDLT--EILPEDEAALARLLADVERPKLVADAKGSWHALS-ARGLTL 442 Query: 89 PSKRWICTSVLARTNGL---PSSLKNACLA-LNFS-------EHLTKMEEGKALIARFCK 137 S+ + L G++ A + Sbjct: 443 DGV-VADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAAVNEGGAGGDGGSGESQSAFDLE 501 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 A+ +A L D + L +D E + + D Sbjct: 502 ALTSEAVPASHLASAGRAAALLPLQVVLDEQMVARDALGLF--TDLEMPVAATLTVMEDA 559 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D ++ Q + E + + L+ LF + + Sbjct: 560 GIAVDDAVLQIRQTELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELKMPKTRKT 618 Query: 258 EG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 + T L+ + L+ +R A + L +A+ DGR+ T Q Sbjct: 619 KTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQPDGRIHTTFQQ 676 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P +R Sbjct: 677 TIA-ATGRLSSTDPNLQNIP------------------------ARHEEGMRIREAFTVG 711 Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L+ AD + IE R++A ++ + I AF +GED++ A ++ V+ +QR+ Sbjct: 712 EGYECLMTADYSQIEMRIMAHLSADQALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRS 771 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K M L GL ++ + + Sbjct: 772 HVKAMSYGL--------------AYGLSTFGLARQLGIDNA------------------- 798 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 ++ A+ A+ V + + E Sbjct: 799 -----------DAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMF------------ 835 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 RR D+ D + +Q + DI+ Sbjct: 836 --------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQGSAADIV 872 Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPL 663 + M + I+L +HDE++ E +V L M +PL Sbjct: 873 KKAMIDVDSALTERALASRILLQIHDELLIEVAPGEAEAVENLLKEQMGGAAE--LSVPL 930 Query: 664 KAEGYEAKRYR 674 + +R Sbjct: 931 DVAVGRGRTWR 941 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L ++L+ E + H E + + +D+ Sbjct: 399 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 515 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 570 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940 Query: 669 EAKRYR 674 ++ Sbjct: 941 IGSDWQ 946 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L ++L+ E + H E + + +D+ Sbjct: 404 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 520 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 575 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 787 SYGLAYG-----LSTYGL---------------------------------------AQQ 802 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 803 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 845 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 846 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 887 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 888 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 945 Query: 669 EAKRYR 674 ++ Sbjct: 946 IGSDWQ 951 >gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33] gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33] gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84] gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7] gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407] gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 05ZYH33] gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 98HAH33] gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84] gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407] gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7] gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1] Length = 878 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 89/678 (13%), Positives = 182/678 (26%), Gaps = 159/678 (23%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFER 77 I AW D+ + L +L +T+ ++ Sbjct: 324 FEILGENYHREDLVGLAWGDKEKIYV---GGPELLDSPVLRDFLESQTIK------TYDF 374 Query: 78 I---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134 + I +P + +R L + + L + Sbjct: 375 KRGKVLLDRKEIKLPPATFD-----SR----------LAKYLLSTVEDNSLTTIANLYGQ 419 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------E 184 ++ + + + ++F + R V+ E + ++ + E Sbjct: 420 TSLVPDEAVYGKGAKLDLPE-REIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDME 478 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + G +++ + + +Q +L ++I +L + L Sbjct: 479 LPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTI 537 Query: 245 LFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF G+ T +L IL + + L +A+ Sbjct: 538 LFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAI 597 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DG++ ++TGR S QN+P Sbjct: 598 LEDGKIHTRYVQ-DLTQTGRLSSTDPNLQNIP------------------------VRLE 632 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S L+ +D + IE RVLA I+ + I+AF G DI+ +T + F Sbjct: 633 QGRLIRKAFVPSLENSVLLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFG 692 Query: 419 TPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + V+ R K + + Y L + + + FE + Sbjct: 693 IEKAEYVTPNDRRNAKAVNFGVVYG-----ISDFGLSNNLGITRKEAKAYIDTYFERFPG 747 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGG 536 +++ + + + + + EL + ++ + Sbjct: 748 IKNYMETIVREARDKGYVETIYKRRREL---------PDINSRNFNVRNFAERTAINSPI 798 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 SA + V + + + T G Sbjct: 799 QGSAADILKVAMINLDK------------------------------------ALTEAGL 822 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 T ++Q IVL E P +V + M Sbjct: 823 ATRMLLQ-------------VHDE---IVL--------EVPVAELETVKAMVKETMESAI 858 Query: 656 SWAKGLPLKAEGYEAKRY 673 S +PL A+ E + Sbjct: 859 S--LSVPLIADENEGSTW 874 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L ++L+ E + H E + + +D+ Sbjct: 399 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 515 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 570 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940 Query: 669 EAKRYR 674 ++ Sbjct: 941 IGSDWQ 946 >gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150] Length = 880 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 84/658 (12%), Positives = 174/658 (26%), Gaps = 145/658 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLG 85 I A+ + + + L Q +T + ++ + G Sbjct: 337 EIVGLAW----GDSRQIYVSTSDLLQQPLFQEFLTKTALKT-----YDLKRAKVLLSHYG 387 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I++P+ + L + ++ L + + D Sbjct: 388 IELPAAAFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVYG 432 Query: 146 DCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIND 196 + QLF ++ +L L + E+ L + + Sbjct: 433 KGAKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEI 492 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 493 AGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYT 551 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL S + L EA+++DG++ Sbjct: 552 KKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYVQ 611 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 612 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 646 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 647 WADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDR 706 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L + + + + FE + +++ + + Sbjct: 707 RNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREA 761 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + R + ++ + Sbjct: 762 RDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADI----- 807 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 ++ ++ + N + Sbjct: 808 ----------------LKVAMINLDRALTEKNFKSR------------------------ 827 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + IVL V P +V L M A +PL A+ Sbjct: 828 ---MLLQVHDE---IVLEV--------PADELTAVRQLVKETMEAAIKLA--VPLVAD 869 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 192/697 (27%), Gaps = 158/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQY 60 +++D E + Y + L E + + D E+ + L + Sbjct: 23 YVYLDTE----VAVKDFEKVDYFND-KVRLIQIGTQ-EDIFVIDAFKVERDTLKEFLKEV 76 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLA 115 L + + V HN F+ D+ K T + ++ SL + Sbjct: 77 LESKGI--VGHNLKFDLKFLA--TNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAVAVR 132 Query: 116 LNFSEHLTKMEEG--------KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L E + K I K + + Q + Sbjct: 133 LTDEEVDKTYQTSPWWVENLTKEQIEYSAKDIEVLRSIFREQVVRLNEEQTHLKSSGE-- 190 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T ++F + P++ E +I G ID + L + + L + + Sbjct: 191 --TYKVFGVVNPVAALEMAFLPCLVSIELSGIPIDEKQLSNLIKNSKTTFQNLYIEFKRK 248 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + +L G+ L + + L K L+ R Sbjct: 249 YYID---PFSPQQVANFLTKKLGLKLPKTEKGSFSSQDVHLKPYEDKPEVKTLLSIRYEK 305 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL LS+ V + R+ G + GAS TGR S QN+P+ Sbjct: 306 KTL--DKLEELSKYV-KNSRVYGEFKQIGAS-TGRMSSYKPNLQNIPKN----------- 350 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++S A +G ++AD + IE R+ A + IKAF Sbjct: 351 -------------------LKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQE 391 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 +D++ T + +++KE+R + K + L Y K A + Sbjct: 392 KKDLHKLTASVITGKDYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNN--------- 442 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + + + +++ Sbjct: 443 -----------------------------YDIDITLSQAKTFHENFFNFYPKFKEWHENV 473 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + + + R+L Sbjct: 474 KNYLEK------------------------HKFIQVETLLGRKL---------------- 493 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTP 640 +Q D+L + K +V VHDEIV E Sbjct: 494 -----IAYKFTDAVNYPIQGSGSDLLKMAVVLFYKSLLDLDAKVVNLVHDEIVVEVKQED 548 Query: 641 YFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYRK 675 V + S M K + +P++ E +K + K Sbjct: 549 VDKVQEILSQSMEKAGRYLLKEVPVEFEINVSKSWSK 585 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 86/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKTL 84 I A+ + + +A+ ++L +T + V ++ + L Sbjct: 338 IIGFAWGTKGQ----LYASTDTALLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHL 387 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 I + + +R L + ++ +L ++ + Sbjct: 388 DITLQKPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQIALPLDEVVY 432 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIN 195 + + L ++ + +L L D E+ L + + Sbjct: 433 GKGAKKAIPEKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKME 492 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G +++ + +Q ++L ++I +L + L + LF G+ Sbjct: 493 IAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLGLPLEY 551 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL + + L + + DG++ Sbjct: 552 TKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYV 611 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 612 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 646 Query: 371 SN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN + V+ Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPND 706 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + + + + + Sbjct: 707 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVRE 761 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L R + + ++ + Sbjct: 762 ARDKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQGSA------- 805 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + L R Y K+ Sbjct: 806 ------------------------ADILKIAMIHLDQALERGA-YKTKM----------- 829 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEG 667 + IVL V P ++ L M A +PL+A+ Sbjct: 830 -----LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELA--VPLEADE 871 Query: 668 YEAKRY 673 E K + Sbjct: 872 NEGKTW 877 >gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] Length = 880 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 84/659 (12%), Positives = 173/659 (26%), Gaps = 147/659 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERI---LFKKTL 84 I A+ + + L Q + +A ++ + Sbjct: 337 EIVGLAW----GDSRQIYVGTSDLLQQPLFQDF----LTKIA--LKTYDLKRTKVLLSHY 386 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 GI++P + L + ++ L + + D Sbjct: 387 GIELPVASFD---------------ARLAKYLLSTVEDNELATIARLYGQTILPTDDEVY 431 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTIN 195 + + QLF ++ +L L + E+ L + + Sbjct: 432 GKGAKRALPEKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKME 491 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G +++ + + +Q + + L ++I L + L LF G+ Sbjct: 492 IAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEY 550 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL S + L EA+++DG++ Sbjct: 551 TKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV 610 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 611 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 645 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQ 428 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ Sbjct: 646 EWADSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPND 705 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + + FE + +++ + + Sbjct: 706 RRNAKAVNFGVVYG-----ISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVRE 760 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + R + ++ + Sbjct: 761 ARDKGYVETIYHR---------RRSLPDINSRNFNIRNFAERTAINSPIQGSAADI---- 807 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ ++ + N + Sbjct: 808 -----------------LKVAMINLDRALTEKNFKSR----------------------- 827 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + IVL V P +V L M A +PL A+ Sbjct: 828 ----MLLQVHDE---IVLEV--------PADELTAVRQLVKETMEAAIKLA--VPLVAD 869 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L ++L+ E + H E + + +D+ Sbjct: 399 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 455 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 515 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 570 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940 Query: 669 EAKRYR 674 ++ Sbjct: 941 IGSDWQ 946 >gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 537 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 93/636 (14%), Positives = 175/636 (27%), Gaps = 136/636 (21%) Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLA 115 +L D V AH+ ++ G + T++ A L + L Sbjct: 12 DWLADADVPKAAHDVKAVLHAL-RSRGWSLAGLT-SDTALAAYLARPGQRTFDLADLALR 69 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 E T+ ++ A + D E Sbjct: 70 YLRRELRTEEPA-DGQLSLLGGADEADAQAAQQEMLAASAIAELAD--ALDTELAERGGT 126 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+ E L + G +D + + L+ + ++ ++ ++ I + Sbjct: 127 ELLADL--ELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIGKEI-NL 183 Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNIT--QLAKDLILNRLASSGSAIL 290 L++ LF + ++ T L +L ++ + Sbjct: 184 GSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLYEQTGHEFLQFLLQHRDATRLKVT 243 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L ++V+ DGR+ T A TGR S QN+P Sbjct: 244 -VDGLIKSVADDGRIHTTYSQTIA-ATGRLSSTDPNLQNVP------------------- 282 Query: 351 ETIADPLGLASDCVRSCIIASNG------KKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 A +R + G +L+ AD + IE R++A ++ ++ I+AF + Sbjct: 283 -----IRTAAGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRS 337 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 D + T A+ F VS EQRA K M L GL Sbjct: 338 QHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGL--------------AYGLS------ 377 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + ++ + + + A GV + Sbjct: 378 ------------------------AYGLSGQLRISTDEAKGLMDDYFAGFGGVRDYLAGV 413 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + + RR D+ D Sbjct: 414 VDQARKDGYTATIL--------------------------GRRRYLPDLTSDNRQRREMA 447 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD 638 ++ +Q + DI+ M + ++L VHDE+V E D Sbjct: 448 ERM---------ALNAPIQGSAADIIKVAMLGVRRALSAEGLRSRMLLQVHDELVLEVAD 498 Query: 639 TPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + L M +PL+ + + Sbjct: 499 GERETCEALVRREMAAAAD--LSVPLEVSVGYGRSW 532 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 190/663 (28%), Gaps = 145/663 (21%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLL 58 + +DIET G+ + E I L A ++ PV ++D + + L Sbjct: 1464 IKYCGLDIETT--------GLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLR 1513 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L ++ ++ + N F+ + + T + ++ ++ Sbjct: 1514 KVLENKNIIKIIQNGKFDAKFLLHN---NFKIENIFDTYIASKLLDKNKNM----YGFKL 1566 Query: 119 SEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + K + + + + L Y K E + L Sbjct: 1567 NNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEE---IKKENL 1623 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ++D E L + G ++DL+ + K I E +++ K + Sbjct: 1624 HIVNDIENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNS 1683 Query: 238 TYALRMYLFLITGIDLV-DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 + L D+ + E T S L + + L R L Sbjct: 1684 QQQVLKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRR-LYKLYSAFYLKLP 1742 Query: 297 EAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ ++ T + +GR+S Q +PRQ Sbjct: 1743 LHINTKTNKIHTTFNQLK-TFSGRFSSEKPNLQQIPRQ---------------------- 1779 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I ++ ++AD IE ++ A I ++ +KA+ N D++ T + Sbjct: 1780 ------KNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASI 1833 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 I ++KE R I K + L Y K A+ Sbjct: 1834 ITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTY-------------------- 1873 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + C ++ ++G+ + + + Sbjct: 1874 ------------------YGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQ--------- 1906 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 KR + S+R++++ Sbjct: 1907 -------------------KRALQYSTLSNRKVIFP-------------------YFSFT 1928 Query: 596 KLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT-PYFSVGTLCSL 650 K VQ DIL + + N I+L VHDEI+ E ++ L Sbjct: 1929 KALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQS 1988 Query: 651 MTK 653 M Sbjct: 1989 MEN 1991 >gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont phage 1] Length = 415 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 151/418 (36%), Positives = 220/418 (52%), Gaps = 16/418 (3%) Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D+ ATRE+++ L ++ E LW LDQ IN RG +D++L + E+K+L Sbjct: 3 DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L+ RL Sbjct: 63 TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRINDPDIPPALRELLSIRLQ 122 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S ++ K L +++S+DGRLRGT QF GASRTGRW+G +FQP NLPR + Sbjct: 123 SCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDNG 182 Query: 344 IQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 I+AL G D + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ Sbjct: 183 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 242 Query: 401 AFANGEDI-----YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 AF+ ++ Y YA+AFN + V+K QR IGKVMEL LGY GG F T A Sbjct: 243 AFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALAY 302 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 LDL + + +A S + + + + K+ T C+ +K+ WR H Sbjct: 303 SLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAHT 361 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + W D+ + +Q G +L +RR K + I LPS R L Y Sbjct: 362 QTVSFWYDIEDAVKQAIQSPGV-----AFKCRKLSVRRDKSWLRICLPSGRSLCYPSA 414 >gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] Length = 861 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 93/604 (15%), Positives = 172/604 (28%), Gaps = 128/604 (21%) Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC-LALNFSEHLTKMEEGKALIARFCK 137 K+ + I K + + + T G S L+ L + + K L Sbjct: 371 KEWKNLGINFKNYFDILLASFTLGTDKSQKLETMAFDKLGL---SIEEIDKKILNKFD-- 425 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 S + +F +E + E++ + + + Sbjct: 426 --ATSFIEYRKNRLITMTYAIFKLKEVFMDLLEKENQLDIYL---EEKEFTDVLIYMEKQ 480 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G I+ + K + ++ K ++ I + G + L LF GI+ V + Sbjct: 481 GIAINQNYFEKYNLELEKKIKDIENKIY-IESGESFNISSPKQLGEVLFETMGIEGVKKN 539 Query: 258 E---GTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 + T +L + +L+L + L + S +GR+ T G Sbjct: 540 KRGYSTDAEVLELLRDRGIKIAELLLEYRELVKLKSTYVEPLLKL-SINGRIHTTYNQTG 598 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 + TGR S QN+P +R IAS G Sbjct: 599 -TATGRLSSSNPNLQNIP------------------------TRTYEGTKIREGFIASKG 633 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 KLV D + IE RVLA I+ ++ I A+ + D++ T K F Sbjct: 634 MKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFM--------------- 678 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + K + T + + + + + Sbjct: 679 ----------------------------LKDDEKVSKTQRNIAKVINFSVLYGKTPFGLS 710 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + K+ + +L + ++ V L D+ E RR Sbjct: 711 KELKITVSDAKLYINTYFKEYPKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNIN 770 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 K Q R ++Q + +I+ + Sbjct: 771 IKE-----------------------------QAKRMA------VNTVIQGTAANIIKKV 795 Query: 614 MKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYE 669 MK ++L VHDE++ E + + +M + + LK G E Sbjct: 796 MKEIYDKLCNDNVKMLLQVHDELIFEVRED-INIFEEIRDIMQNTIVF-DDVVLKVNGSE 853 Query: 670 AKRY 673 + Sbjct: 854 GDNW 857 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 104/666 (15%), Positives = 187/666 (28%), Gaps = 134/666 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGI 86 +T +A D + + D TE + + + L + V H++ R + G Sbjct: 342 GEVTRLVFATDKQ-ALVLDPTELTPAQDRAVAEALA--STRLVVHDAKGVRHALA-SRGW 397 Query: 87 DIPSKRWICTSVLARTNGL---PSSL-KNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 + + T + A L L EG A F + Sbjct: 398 TL-GEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAAD-EG----ALFDMDESEE 451 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P A QL + T E K L LSD E L L + G +D Sbjct: 452 GPTGAEMRAGRIAAQLIPL--AERLRRTLEESKELGLLSDMEMPLARLLGDMEATGIGVD 509 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------ 256 ++ L + + +K + + + L+ LF + Sbjct: 510 TGVLSDLSAELGADVEKARRGAWEAAGREV-NLSSPKQLQELLFDHFALPKTKKTKTGYT 568 Query: 257 -SEGTLKSILSHSN-----ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + L + + + + L+ +R +++L V +D R+ T Sbjct: 569 TNAEALADLWAKTEASGGAGHRFLGYLLAHRDRIKLKQ--MVDSLIATVGADERIHTTFS 626 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A+ TGR + QN+P +R Sbjct: 627 Q-VAAATGRLASSDPNLQNIP------------------------ARSPDGMRIRGAFTP 661 Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G L+ AD + IE R++A ++G++ I+AF +GED++ T + F TP+++VS E+R Sbjct: 662 GPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVEQVSGEER 721 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K L Y + L + FE + + + + Q Sbjct: 722 SRIKATSYGLAYG-----LSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVAQA 776 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + G R + + E + Sbjct: 777 RADGYTETMFGR---------RRYLPDLRSSNRQRREMAERAALNAPIQGSAADIV---- 823 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + +N A+ G T +VQ Sbjct: 824 --------------------------KIAMMNVAS-----ALANEGLATRLLVQ------ 846 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 +HDE++ E L M A +PL Sbjct: 847 ------------------IHDELLLEIAPGEADVAEKLVRERMEGAV--ALSVPLDVAVG 886 Query: 669 EAKRYR 674 ++ Sbjct: 887 VGASWQ 892 >gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] Length = 889 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 95/669 (14%), Positives = 197/669 (29%), Gaps = 152/669 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + D L ++L +T + V ++ + Sbjct: 345 DLIGFAWSCGDK----LYATDKLELLQDPILKEFLE-KTPLKV-----YDFKKAKVLLNR 394 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 G+D+ + + +R L + ++ L + ++ Sbjct: 395 FGLDLQAPAFD-----SR----------LAKYLLSTVENNEISTIANLYGQTYLVDDETF 439 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQT 193 + + + F E+ R V E L+ D E+ L L+ Sbjct: 440 YGKGVKKAIPE-RETFLEHLVRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAK 498 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ++ + +L++Q +KL ++I +L + L LF G+ + Sbjct: 499 MEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPI 557 Query: 254 -----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 T +L IL+ + + L + + +DG++ Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTR 617 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P +R Sbjct: 618 YVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 652 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426 + L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ Sbjct: 653 VPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTP 712 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L + + + FE + +++ + Sbjct: 713 NDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVV 767 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545 + + + L EL + ++ + SA + Sbjct: 768 REARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADILK 818 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + + + + L + R Y K+ Sbjct: 819 IAMIQLDK-------ALVAGR--------------------------YQTKM-------- 837 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664 + IVL E P + S+ L M + +PL Sbjct: 838 --------LLQVHDE---IVL--------EVPKSELASIKKLVKQTMEEAIQ--LSVPLI 876 Query: 665 AEGYEAKRY 673 A+ E + Sbjct: 877 ADENEGVTW 885 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 233 bits (594), Expect = 9e-59, Method: Composition-based stats. Identities = 87/660 (13%), Positives = 168/660 (25%), Gaps = 146/660 (22%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-----FERILFKKTLGI 86 L E + + ++ K LG Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143 K + + L K K I S + Sbjct: 394 SFQ-KPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKTVFAKQKIETLSIDSYGNF 452 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + K E E + E L + ++ +G +ID Sbjct: 453 LLKR----SQILYSCLEPLEKDLKEKELENVLW-----ETELPLIPVLASMEKQGIKIDR 503 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 K + ++ L+++I K + L LFL + ++ T Sbjct: 504 KYFQKYSLELNEKLVLLEKEIWKEAGEEF-NINSPKQLGEILFLKLNLPTGKKTKTGFST 562 Query: 261 LKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 +L + + +L + ++ + + V D R+ G + TGR Sbjct: 563 DVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGR 621 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +R IA +G KL+ Sbjct: 622 LSSSDPNLQNIP------------------------VKTEEGIRIRQGFIARDGWKLLSI 657 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + +E RVLA ++ ++ +KA+ +D++ T K F Sbjct: 658 DYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF---------------------- 695 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + + A + + Sbjct: 696 ---------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGIS 734 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 K + A++ V Q ++ E +R+ + R K Sbjct: 735 VKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN--- 791 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618 Q R +VQ + +IL + M Sbjct: 792 --------------------------QAERMA------VNTVVQGTAAEILKKVMIKIYS 819 Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E + V TL + M + + L+ + Sbjct: 820 WLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 878 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 97/666 (14%), Positives = 187/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + ++L+ E + H E + + +D+ Sbjct: 404 IAVATAT-SAAIVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNELRLR 520 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 575 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 787 SYGLAYG-----LSTYGL---------------------------------------AQQ 802 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 803 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 845 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 846 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 887 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 888 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 945 Query: 669 EAKRYR 674 ++ Sbjct: 946 IGSDWQ 951 >gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 884 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 79/675 (11%), Positives = 168/675 (24%), Gaps = 153/675 (22%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + ++ Sbjct: 330 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 382 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L + Sbjct: 383 SKVLLSHLGIDLPAPAFD---------------SRLAKYLLSTVDDNELSTIARLYTEYV 427 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD---------GERDL 187 S ++ + L ++ V L L++ E+ L Sbjct: 428 LDSDEAVYGKGAKRAVPDKAVLLSHLARKIVVLNHSEKAMLDKLTEHQQASLLFDMEQPL 487 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G + + + +++ +L ++I L + L LF Sbjct: 488 ANVLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFD 546 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 + T +L IL + + L + + D Sbjct: 547 KMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKD 606 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 607 GKIHTRYLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 641 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + + L+ +D + IE RVLA I+ ++ I AF G DI+ +T + F Sbjct: 642 LIRKAFVPETADEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEK 701 Query: 422 -DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L + + + FE + + Sbjct: 702 AEDVTPNDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKD 756 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSIS 539 + + + + L EL + ++ + + S Sbjct: 757 YMERVVRDAKDKGYVETLFHRRREL---------PDINARNFNVRQFAERTAINSPIQGS 807 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 A + + + + + D Sbjct: 808 AADILKIAMINLDKALVDGRFKT------------------------------------- 830 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWA 658 + + I+L E P ++ L M Sbjct: 831 ------------KMLLQVHDE---IIL--------EVPKDELEAIEKLVKETMESAIE-- 865 Query: 659 KGLPLKAEGYEAKRY 673 +PL A+ + + Sbjct: 866 LSVPLVADESAGQTW 880 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 87/660 (13%), Positives = 168/660 (25%), Gaps = 146/660 (22%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-----FERILFKKTLGI 86 L E + + ++ K LG Sbjct: 345 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 395 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143 K + + L K K I S + Sbjct: 396 SFQ-KPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKTVFAKQKIETLSIDSYGNF 454 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + K E E + E L + ++ +G +ID Sbjct: 455 LLKR----SQILYSCLEPLEKDLKEKELENVLW-----ETELPLIPVLASMEKQGIKIDR 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 K + ++ L+++I K + L LFL + ++ T Sbjct: 506 KYFQKYSLELNEKLVLLEKEIWKEAGEEF-NINSPKQLGEILFLKLNLPTGKKTKTGFST 564 Query: 261 LKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 +L + + +L + ++ + + V D R+ G + TGR Sbjct: 565 DVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGR 623 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +R IA +G KL+ Sbjct: 624 LSSSDPNLQNIP------------------------VKTEEGIRIRQGFIARDGWKLLSI 659 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + +E RVLA ++ ++ +KA+ +D++ T K F Sbjct: 660 DYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF---------------------- 697 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + + A + + Sbjct: 698 ---------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGIS 736 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 K + A++ V Q ++ E +R+ + R K Sbjct: 737 VKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN--- 793 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618 Q R +VQ + +IL + M Sbjct: 794 --------------------------QAERMA------VNTVVQGTAAEILKKVMIKIYS 821 Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E + V TL + M + + L+ + Sbjct: 822 WLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 880 >gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] Length = 878 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 79/662 (11%), Positives = 161/662 (24%), Gaps = 141/662 (21%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLAL-NFSEHLTKMEEGKALIA 133 + G+D+ + + + L ++ + GK + Sbjct: 377 SKVLLSHFGVDL-PAPAFDSRLAKYLLSTVDDNELSTIARLYTDYVLDSDEAVYGKGVKR 435 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 R E D + L D E+ L + Sbjct: 436 --AVPEKSVLLSYLAR---KIVVLNHSEKVMLDKLTEHQQASLLF---DMEQPLANVLAK 487 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 + G + + +++ +L ++I L + L LF + Sbjct: 488 MEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPT 546 Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 T +L IL + + L + + DG++ Sbjct: 547 SYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTR 606 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P +R Sbjct: 607 YLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 641 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSK 426 + + L+ +D + IE RVLA I+ ++ I AF G DI+ +T + F + V+ Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L + + + FE + +++ + Sbjct: 702 NDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545 + + L EL + ++ + + SA + Sbjct: 757 RDAKDKGYVETLFHRRREL---------PDINSRNFNIRQFAERTAINSPIQGSAADILK 807 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + + + + D Sbjct: 808 IAMINLDKALVDGQFKT------------------------------------------- 824 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 + + I+L V P +V TL M +PL Sbjct: 825 ------KMLLQVHDE---IILQV--------PKDELEAVKTLVKETMESAID--LSVPLI 865 Query: 665 AE 666 A+ Sbjct: 866 AD 867 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 94/576 (16%), Positives = 166/576 (28%), Gaps = 120/576 (20%) Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L+ + L RF SI S D + V+A E Sbjct: 405 HDMSLLAYLLDPTRTNYGYL---YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACES 461 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE L E L + G ID + + + E ++ ++I Sbjct: 462 AR--REELWSLYETI--ELPLIHTLVVMEKNGIYIDTNKLAETTARFKDELAQVQQEIYD 517 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L G + L + LF + ++ ++ T +L + IL + Sbjct: 518 LA-GETFNINSPKQLGVILFEKMNLPVIKKTKTGYSTDAEVLDMLRNESPIVEKILAYRS 576 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L L+ ++ R+ T + TGR S QN+P Sbjct: 577 VAKLVSTYLEGLAVLINDKTKRIHTTFNQMV-TATGRLSSSDPNLQNIP----------- 624 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401 +R+ G LV AD + IE R+LA ++G++ IKA Sbjct: 625 -------------VRTEKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKA 671 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F +G+DI+ T A+ + V+ E+R+ K + + Y L + + Sbjct: 672 FVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKAINFGIIYG-----ISDFGLSRDLGITR 726 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 F + + + + M + E + G EL + Sbjct: 727 GEAKNYIDLYFSRYPKVKEYMDRMVQEAHETGKVRTMFGRQREL---------PDINSRN 777 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + +N Sbjct: 778 FNRRSFAER-----------------------------------------------TAMN 790 Query: 582 TATSQLMRERTYGGKLTENIV-QAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638 T KL N V Q + + ++L VHDE+V E + Sbjct: 791 TPIQG---TAADIIKLAMNQVEQ------------KLEEGNFKSRLLLQVHDELVLEVVN 835 Query: 639 TPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 +V L M +PL + + A+ + Sbjct: 836 EELEAVEELLRSTMQSVVE--LHVPLIVDVHHAENW 869 >gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 878 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 80/662 (12%), Positives = 165/662 (24%), Gaps = 141/662 (21%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + ++ Sbjct: 324 FEILGDNYHVENIIGFAWGNDKAIYASTNLDLLKDDLFKAALAKP--IKT-----YDFKR 376 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LG+D+ + + + A + Sbjct: 377 SKVLLSHLGVDL-PAPAFDSRLAKYLL-STVDDNELSTIARL----YTDYVLDSDEAVYG 430 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCK---RDVEATRELFKRLIPLSDGERDLWLLDQT 193 KG + P +H+ + + + D + L D E+ L + Sbjct: 431 KGVKRAVPKKAVLLSHLARKIVVLNHSEKVMLDKLTEHQQASLLF---DMEQPLANVLAK 487 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 + G + + +++ +L ++I L + L LF + Sbjct: 488 MEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPT 546 Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 T +L IL + + L + + DG++ Sbjct: 547 SYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTR 606 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P +R Sbjct: 607 YLQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 641 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSK 426 + + L+ +D + IE RVLA I+ ++ I AF G DI+ +T + F + V+ Sbjct: 642 VPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTP 701 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L + + + FE + +++ + Sbjct: 702 NDRRNAKAVNFGIVYG-----ISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVV 756 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVAN 545 + + L EL + ++ + + SA + Sbjct: 757 RDAKDKGYVETLFHRRREL---------PDINSRNFNIRQFAERTAINSPIQGSAADILK 807 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + + + + D Sbjct: 808 IAMINLDKALVDGQFKT------------------------------------------- 824 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 + + I+L V P +V TL M +PL Sbjct: 825 ------KMLLQVHDE---IILQV--------PKNELEAVKTLVKETMESAID--LSVPLI 865 Query: 665 AE 666 A+ Sbjct: 866 AD 867 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 79/656 (12%), Positives = 176/656 (26%), Gaps = 131/656 (19%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDI 88 L +AW ++ + L + + ++ + LG+D+ Sbjct: 344 LIGFAWGNQGQIYASADISLLTTELFKKVLEQP----I---ATYDFKRSKVLLSHLGLDL 396 Query: 89 PSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPY 145 P+ + + + + ++ GK + ++ Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 455 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + + + +A +D E L + + G ++ D Sbjct: 456 ARKVQVLLDSRPVMLDKLAEHEQADL--------YTDIELPLANVLAKMEIEGIAVNQDS 507 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + ++ E ++L ++I ++ G + + L + LF + T Sbjct: 508 LQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYST 566 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DGR+ ++TGR Sbjct: 567 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQ-DLTQTGRL 625 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R + L+ + Sbjct: 626 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHDDAVLLSS 661 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + Sbjct: 662 DYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFG 721 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + + + + + + + L Sbjct: 722 IVYG-----ISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETL 776 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 R + + ++ + Sbjct: 777 FKR---------RRQLPDINSRQFNVRSFAERTAINSPIQGSAADI-------------- 813 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 ++ ++ T + Sbjct: 814 -------LKIAMINLDQALVAGGFETK---------------------------MLLQVH 839 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ +V L M + A +PL+ + K + Sbjct: 840 DE---IVL--------EVPNHELAAVKELVKETMESAVNLA--VPLRVDESAGKSW 882 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 84/664 (12%), Positives = 175/664 (26%), Gaps = 144/664 (21%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLGI 86 I A+ ++L +T + V ++ + LGI Sbjct: 338 IIGFAWGTKGH--LYASTDTGLLQTPIFKEFLE-KTPLKV-----YDFKRAKVLLSHLGI 389 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + +R L + ++ +L ++ + Sbjct: 390 TLQNPAFD-----SR----------LAKYLLSTVEDNEISTIASLYSQIALPLDEVVYGK 434 Query: 147 CTRANHVQAWQLFGEYCKRDVEA---------TRELFKRLIPLSDGERDLWLLDQTINDR 197 + + L ++ + +L L D E+ L + + Sbjct: 435 GAKKAIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKMEIA 494 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----- 252 G +++ + +Q ++L ++I +L + L + LF + Sbjct: 495 GIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLEYTK 553 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 T +L IL + + L + + DG++ Sbjct: 554 KTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRYVQ- 612 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++TGR S QN+P +R + Sbjct: 613 DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEE 648 Query: 373 -GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN + V+ R Sbjct: 649 ENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRR 708 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + + Y L + + + FE + + + + + Sbjct: 709 NAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREAR 763 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + L R + + ++ + Sbjct: 764 DKGYVETLFKR---------RREIPDINSRNFNVRGFAERTAINSPIQGSA--------- 805 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + L R Y K+ Sbjct: 806 ----------------------ADILKIAMIHLDQALERGA-YKTKM------------- 829 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + IVL V P ++ L M +PL+A+ E Sbjct: 830 ---LLQVHDE---IVLQV--------PSDELAAIKELVKETMESAIELV--VPLEADENE 873 Query: 670 AKRY 673 K + Sbjct: 874 GKTW 877 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 82/572 (14%), Positives = 134/572 (23%), Gaps = 113/572 (19%) Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L E + E A G P D + + ++A Sbjct: 405 ELGDYLLHPEESRRDIE---RTAFALCGDAAEAPADLSDEQRAEREAQLAARLHSPLQAA 461 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L D E L + + G ++ + + + L E+I L Sbjct: 462 LAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEEIHALAGM 521 Query: 231 IIRSSRQTYALRMYLFLIT------GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L LF I T L D +L Sbjct: 522 EF-NISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDKVLTYRMW 580 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L+ + + GR+ + TGR S QN+P Sbjct: 581 TKLRSTYLDGIGALIRPETGRVYTNFNQTV-TATGRLSSSDPNLQNIP------------ 627 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR+ G L+ AD + IE R+LA ++G+ I AF Sbjct: 628 ------------VRTEEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGDATLIDAF 675 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +G+DI+ T A+ F PID V+ EQR K + + Y L + + Sbjct: 676 RHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVYG-----LSDYGLSRDLRIPRK 730 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 FE + L G EL + Sbjct: 731 EAAGYIERYFERYHGVREFLDKTVADAHANGYVTTLYGRRREL---------SAINSRNY 781 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + ++ Sbjct: 782 MQRSFAERMAMNTPIQGTAADLI---------------------KIAMIRAHDALHAAGV 820 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + E+V E + Sbjct: 821 KSRI---------------------------LLQVHD-----------ELVLEAAEAEIA 842 Query: 643 SVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V L M+ A +PL + + K + Sbjct: 843 QVSGLLRTAMSGAAELA--VPLAVDVHIGKNW 872 >gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21] gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21] Length = 811 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 74/549 (13%), Positives = 155/549 (28%), Gaps = 92/549 (16%) Query: 8 IETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLR 62 E S +G + E L AW + T ++ + + L Sbjct: 315 TEMFSDNDFYYFEMLGDNYHVED----LIGIAWGNSDTIY--ATSNVSLLQEALFKKALS 368 Query: 63 DETVMCVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL-- 116 + ++ + ID+P + T + +L + L Sbjct: 369 KP--IKT-----YDFKRSKVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYT 420 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 N GK + + + K V++ + ++ Sbjct: 421 NLPLDTDDAVYGKGAKR--------------AIPEKTRFLEHLAKKVKVLVDSEANIMQQ 466 Query: 177 LIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L + E+ L + + RG ++ + + ++ + + L ++I +L Sbjct: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526 Query: 231 IIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF G+ T +L IL + Sbjct: 527 EF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQIT 585 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + + DG++ ++TGR S QN+P Sbjct: 586 KLQSTYIIGLQDYILEDGKIHTRYVQ-DLTQTGRLSSSDPNLQNIP-------------- 630 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S L+ +D + IE RVLA I+ ++ I AF Sbjct: 631 ----------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE 680 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G DI+ +T + F + V+ R K + + Y L + + Sbjct: 681 GADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG-----ISDFGLSHNLGIPRKL 735 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + FE + +++ + + + + L R + + Sbjct: 736 AKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR---------RRSLPDINSRNFN 786 Query: 524 LTEGFACVV 532 + + Sbjct: 787 IRQFAERTA 795 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 84/667 (12%), Positives = 166/667 (24%), Gaps = 151/667 (22%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187 + + + + L K+ L L D E L Sbjct: 423 LETDEVVYGKGAKRAVPEKEVLLSHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPL 482 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G ++ + ++ KL ++I ++ + L + LF Sbjct: 483 ANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFE 541 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 G+ T +L IL + + L + + D Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 602 GKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420 +R + S L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 637 LIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L + + + FE + ++ Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYIDTYFERYPGIKA 751 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + + + L EL + ++ + Sbjct: 752 YMDNVVREAKDKGYVETLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 ++ ++ T Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 + IVL V P+ ++ L M A Sbjct: 827 ------------MLLQVHDE---IVLEV--------PNDELVAMKALVKETMEAAVELA- 862 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 863 -VPLIAD 868 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 82/598 (13%), Positives = 156/598 (26%), Gaps = 131/598 (21%) Query: 87 DIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 DI + + A S + C A + + + + Sbjct: 549 DISTAALFDVGLAAYLLNSDANDYSWQTLCSAY-LPTFVYPDTT-----DDTDEPNEYAL 602 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 RA + +L D+ EL L + + G D Sbjct: 603 EAIAVRALYPVLRELLHTDGSDDLFYELEL------------PLIPVLLHMERNGIYCDK 650 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----- 258 L+ + ++ E + ++ +L + L LF + G+ + + Sbjct: 651 HLLAEQSRALSHELNAMSLELRRLAQQDF-NIDSPMQLSHVLFDVWGLPTKGLKKTRRGY 709 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L+ ++ LIL+ L+ L + SDGR+ T A T Sbjct: 710 YSTNAQTLASLSMADERVQLILDYRERMKIKNTYLDALVHDIRSDGRIHSTFNQTIA-AT 768 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P VR + + Sbjct: 769 GRLSSSDPNLQNIP------------------------TRSSLGHRVRKAFVLPRNHLFL 804 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE R+LA ++ ++ I AF G D + T A+ F+ D+V+ R+ K + Sbjct: 805 ACDYSQIELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNF 864 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + Y + L + + FE + E + Sbjct: 865 GIVYGQ-----QAFGLATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPT 919 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKR 556 + G + + R L + SA + + + + + Sbjct: 920 MYGRKRHIAQIDSR---------NFQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKQFA 970 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + ++ ++ Sbjct: 971 QL---------------------------------------------GLASKLI----LQ 981 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 DE+ E V ++ M + +PL AE A + Sbjct: 982 IH-----------DELDFEVVPEELERVSSVVKRAMEGVVT--LRVPLIAEISYADNW 1026 >gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase Length = 924 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 102/762 (13%), Positives = 209/762 (27%), Gaps = 191/762 (25%) Query: 2 SKLFIDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA- 52 S++ ID+ET P + K + AY ++Q I + + Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266 Query: 53 --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L E + +AHN F+ + +L I + W T ++ Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIID 324 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L + E + + P + + W + Y Sbjct: 325 YRGERYSWSKRLAWLET--------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLA 376 Query: 165 RDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L ++ IPL + + I G +D + + L+ Sbjct: 377 DDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSY 436 Query: 214 AQERKKLDEDIVKLTDG------------------------------------------- 230 +E +L++ + + +G Sbjct: 437 EKEISRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSK 496 Query: 231 --IIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + T L LF G++ + T L +++ + Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRKA 556 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++ LS + D + + +G + TGR S Q PR+ + + Sbjct: 557 NHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNF 615 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + +G +V D + +E R+L + I + + Sbjct: 616 EIKKMFNSRFG----------------DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ + AF I++VSK+QR K ++ + YQ A+ G+ Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + CE+ K + + V + +D Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + + A R + + + Sbjct: 741 KKHVKDISTVKTLTGATRNLPDIDSIDQSKANE--------------------------- 773 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 R+ +Q D + + I +TVHD IV + P Sbjct: 774 --AERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825 Query: 639 TPY-FSVGTLCSLMTKNPSWAK------GLPLKAEGYEAKRY 673 + +M + + +P+ +E + Y Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNY 867 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 81/658 (12%), Positives = 180/658 (27%), Gaps = 135/658 (20%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDI 88 L +AW ++ + L + + ++ + LG+D+ Sbjct: 344 LIGFAWGNQGQIYASADISLLTTKLFKKVLEQP----I---ATYDFKRSKVLLSHLGLDL 396 Query: 89 PSKRWICTSVLARTN-----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 P+ + + ++L ++ ++ GK + ++ Sbjct: 397 PAASY-DARLANYLLSTVEDNEMATLARLYTTISLDTD--EVVYGKGVKRAVPDKAVLLG 453 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + + +A +D E L + + G ++ Sbjct: 454 HLARKVQVLLDSRPVMLDKLAEHEQADL--------YTDIELPLANVLAKMEIEGIAVNQ 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSE 258 D + ++ E ++L ++I ++ G + + L + LF + Sbjct: 506 DSLQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGY 564 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ + + L + + +DGR+ ++TG Sbjct: 565 STAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQ-DLTQTG 623 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + L+ Sbjct: 624 RLSSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHDDAVLL 659 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 +D + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + Sbjct: 660 SSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVN 719 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L + + + FE + +++ + + + + Sbjct: 720 FGIVYG-----ISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVE 774 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 L R + + ++ + Sbjct: 775 TLFKR---------RRQLPDINSRQFNVRSFAERTAINSPIQGSAADI------------ 813 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 ++ ++ T + Sbjct: 814 ---------LKIAMINLDQALVAGGFETK---------------------------MLLQ 837 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ +V L M S A +PL+ + K + Sbjct: 838 VHDE---IVL--------EVPNHELAAVKALVKETMESAVSLA--VPLRVDESAGKSW 882 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 99/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L Q+L+ E + H E + + +D+ Sbjct: 404 IAVATAT-SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 460 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 461 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNELRLR 520 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 575 RDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 787 SYGLAYG-----LSTYGL---------------------------------------AQQ 802 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 803 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 845 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 846 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 887 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 888 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 945 Query: 669 EAKRYR 674 ++ Sbjct: 946 IGSDWQ 951 >gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] Length = 1025 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 91/692 (13%), Positives = 190/692 (27%), Gaps = 161/692 (23%) Query: 28 AVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + A + D + A+ L ++L+ + + V H+ K LG+ Sbjct: 446 ADCLIILIANKAAILYTTDLQSSDQALLEMLRKFLQKNSSITVLHDYK-------KHLGL 498 Query: 87 ----------DIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIA 133 + + T + + +L+N + G+ Sbjct: 499 LKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHY-LDIQSVEDNLGENEAK 557 Query: 134 RF-----------CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 + + R L +T + K+ ++D Sbjct: 558 QGELDLLIDNEVSSSEEETNEKQTQAREAKFLKTALLIRLLALHFASTLDDRKQTGLMTD 617 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + + + + D G +D+ + + + + + + +++ G + + L+ Sbjct: 618 LEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSAD-AEFAQNMAWKVAGSSVNLQSPKQLQ 676 Query: 243 MYLFLITGIDLVDMSE----GTLKSILS--------HSNITQLAKDLILNRLASSGSAIL 290 LF G+ ++ T L +Q L+ +R + I Sbjct: 677 QILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI- 735 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + +L +A D R T + TGR S QN+P Sbjct: 736 -VQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIP------------------- 775 Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 A +R+ I + L+ D + +E R++A + + I+AF +G D + Sbjct: 776 -----NRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGVDFH 830 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + + P+++V+ +QR+ K M L Y T L Sbjct: 831 KYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYG-----LSTYGLAKQLS----------- 874 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + E++K + V + L Sbjct: 875 ----------------------------ISPAEAEMLKNKYFDTFGNVHDYLESLVSKAK 906 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR + + + A + Sbjct: 907 ELGYTETMF--------------------------GRRRYFPQLSSNNRASREAAERG-- 938 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M K ++L +HDE++ E Sbjct: 939 -------ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQAQ 991 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 V + M +PL ++ Sbjct: 992 VENIVRKAMENAVH--LDVPLSVSTGVGVDWQ 1021 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 80/656 (12%), Positives = 176/656 (26%), Gaps = 131/656 (19%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDI 88 L +AW ++ + L + + ++ + LG+D+ Sbjct: 357 LIGFAWGNQGQIYASADISLLTTELFKKVLEQP----I---ATYDFKRSKVLLSHLGLDL 409 Query: 89 PSKRWICTSVLARTNG--LPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPY 145 P+ + + + + ++ GK + ++ Sbjct: 410 PAASY-DARLANYLLSTVEDNEMATLARLYTTIPLDTDEVVYGKGVKRAVPDKAVLLGHL 468 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + + + +A +D E L + + G ++ D Sbjct: 469 ARKVQVLLDSRPVMLDKLAEHEQADL--------YTDIELPLANVLAKMEIEGIAVNQDS 520 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + ++ E ++L ++I ++ G + + L + LF + T Sbjct: 521 LQEMAEQNKVVIEELTQEIYEMA-GEVFNINSPKQLGVILFEKMQLPLHLTKKTKTGYST 579 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DGR+ ++TGR Sbjct: 580 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRYLQ-DLTQTGRL 638 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R + L+ + Sbjct: 639 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHDDAVLLSS 674 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + Sbjct: 675 DYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFG 734 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 735 IVYG-----ISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETL 789 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 R + + +L + Sbjct: 790 FKR---------RRQLPDINSRQFNLRSFAERTAINSPIQGSAADI-------------- 826 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 ++ ++ T + Sbjct: 827 -------LKIAMINLDQALVAGGFETK---------------------------MLLQVH 852 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P +V L M + A +PL+ + K + Sbjct: 853 DE---IVL--------EVPSHELAAVKELVKETMESAVNLA--VPLRVDESAGKSW 895 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 85/667 (12%), Positives = 166/667 (24%), Gaps = 151/667 (22%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW +E L + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNEKQIYASTDTDLLKSEAFQAAL-SKAV-----NI-YDFKR 377 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187 + + + + L K+ L L D E L Sbjct: 423 LETDEVVYGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPL 482 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G ++ + ++ KL ++I ++ + L + LF Sbjct: 483 ANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFE 541 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 G+ T +L IL + + L + + D Sbjct: 542 KMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 602 GKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420 +R + S L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 637 LIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L + + + FE + ++ Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYIDTYFERYPGIKA 751 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + + + L EL + ++ + Sbjct: 752 YMDNVVREAKDKGYVETLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 ++ ++ T Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 + IVL V P+ ++ L M A Sbjct: 827 ------------MLLQVHDE---IVLEV--------PNDELVAMEALVKETMEAAVELA- 862 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 863 -VPLIAD 868 >gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C] gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C] Length = 483 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 81/598 (13%), Positives = 154/598 (25%), Gaps = 140/598 (23%) Query: 95 CTSVLARTNGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T++ A +L L +A + ++ Sbjct: 2 DTALAAYLVKPGRRSFALDVLSVEYLGRELQP---PAADGQLAFGADDTAEADALMAQAR 58 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 + F L + E L + G D D + ++ Sbjct: 59 AVLDLGDAFTAKLPEVGAVEL--------LHEMELPTSELLARLERAGIAADRDHMEGME 110 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKS 263 + A ++ ++ + L+ F + L Sbjct: 111 QQFAGAVQQAVKEAHAAVGHEF-NLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAW 169 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + + ++ ++L + + + L +++++DGR+ + A TGR S Sbjct: 170 LATQTDHELPV--IMLRHREQAKLRVT-VEGLVKSIAADGRVHTSFSQTTA-ATGRLSST 225 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382 QN+P +R + G + L+ AD + Sbjct: 226 DPNLQNVP------------------------VRTDEGRAIRRGFVVGEGYESLMTADYS 261 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RV+A ++ ++ I+AF +GED++ T ++ F +V E R K M L Sbjct: 262 QIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERSQVDAEMRRKIKAMSYGL--- 318 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GL +Q + Sbjct: 319 -----------AYGLSAFGLAQQLNIEPA------------------------------E 337 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + GV + + + Sbjct: 338 ARGLMETFFERFGGVRDYLQRVVDEARATGYTATVF------------------------ 373 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR D+ D A ++ +Q + DI+ M K Sbjct: 374 --GRRRYLPDLNSDNRQRREAAERM---------ALNAPIQGTAADIVKVAMLRVDKAIA 422 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDEIV E V L M PL + Sbjct: 423 EAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAAVELRA--PLDVSVGVGGDW 478 >gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4] Length = 773 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 143/394 (36%), Positives = 208/394 (52%), Gaps = 19/394 (4%) Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +L +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L Sbjct: 2 NRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPALREL 61 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + RL S ++ K L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR Sbjct: 62 LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 121 Query: 338 EILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + I+AL G D + L S +R CIIA GKKLV++DL+ IE R+LAW+AG Sbjct: 122 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 181 Query: 395 EDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 E+WK+ AF+ ++ Y YA+AFN + V+KEQR IGKVMEL LGY GG F Sbjct: 182 ENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFL 241 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 T A GLDL + ++ +A + + + + +K+ T C+ +K+ Sbjct: 242 TFALAYGLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRM 300 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR H + W D+ + +Q G +L +RR K + I LPS R L Sbjct: 301 WRNAHPQTVSFWYDIEDAVKQAIQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLC 355 Query: 570 YSDVKGDC---SYLNT--ATSQLMRERTYGGKLT 598 Y + + +Y+ T + + R +TYGGKL Sbjct: 356 YPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum] gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] Length = 1369 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 103/772 (13%), Positives = 195/772 (25%), Gaps = 166/772 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLW----DRTEQSAMP 54 D E L K + + + D ++W D E + Sbjct: 657 ACDTE-VIDIDLKKFSP---IGHGKMICFSIYCGPQVKFHDGNSRVWVDVMDDIEGDEIL 712 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SS 108 +Y DE+++ V HN F+R +F GI++ T +AR S Sbjct: 713 QVFKEYFEDESILKVWHNYAFDRHIFYNH-GINVKGFG-GDTLHMARLWNASRMNSGGYS 770 Query: 109 LKNACLA-LNFSEHLTKMEEGKALIARFCKGSID-SPPYDCTRANHVQAWQLFGEYCKRD 166 L+ LN + K G I + P + + EY D Sbjct: 771 LEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILNWIEYSSLD 830 Query: 167 VEATREL----FKRLIPLSDG----ERDLW--------LLDQTINDRGYRIDLDLVLKLQ 210 E T L +L + D + L + RG ++D+D + L+ Sbjct: 831 SELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVDIDYLKSLE 890 Query: 211 ELIAQERKK-----LDEDIVKLTDGIIRSSRQTYALRMYLF--------------LI--- 248 E + ++ L+ D + ++ F Sbjct: 891 EKAYTDMEENRKVFLNWAKTHSPDAENMNPVSDAQIQQLFFAPVQNKKTKESLPLEKDFE 950 Query: 249 -------------------------TGIDLVDMS----EGTLKSILSHSNITQLAK-DLI 278 G++ ++ S L Sbjct: 951 CDNLDGTIEVGKTKPKKKKTFYLRGIGMESKSLTTNGWPSVDSSSLRELAGKNPIDGKYG 1010 Query: 279 LNRLASSGSAILKLNTLS----EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP--- 331 S L E + + + S + + Q L Sbjct: 1011 SAYDFFVKSKNECYKDLPIEEREQMGREASIAINALLELGSIGTLLNTFIIPLQKLADSN 1070 Query: 332 ---RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + T + + L +R G L+VAD +E R+ Sbjct: 1071 SRLHTSINVNTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRL 1130 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA I I AF G D + T + + + + E+ L + Sbjct: 1131 LAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDR--------GEVLLEWD------ 1176 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G ++ + + + + + + Sbjct: 1177 -------GEGEPPKPLLKNVYASERRKAKTLNFSIAYGKTAHGLSQDWGVTLNEAKETLN 1229 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 W VL + E + R Sbjct: 1230 RWYEDRPEVLVWQRKTIETAHKYGWTRTLM--------------------------GRYR 1263 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGY 622 D+KG+ R +Q + DI+ + M + G+ Sbjct: 1264 QLPDIKGN----KGMKGHAERASI------NTPLQGGAADIVMKAMLIIEDNKRLKELGF 1313 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ +HDE++ E P+ ++ +LM+ + + L + AK + Sbjct: 1314 KLIMQIHDELILEGPEQHADEARSIMMNLMSNPLTTPLLIDLVVDCRYAKTW 1365 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 99/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L Q+L+ E + H E + + +D+ Sbjct: 399 IAVATAT-SAAIVSLPITDTLRAQLAQFLKSEHSRTIVHGYK-ELLHLLGAVDLDLDL-P 455 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 456 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNELRLR 515 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 516 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 569 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 570 RDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 628 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 629 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 782 SYGLAYG-----LSTYGL---------------------------------------AQQ 797 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 798 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 840 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 841 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 882 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 883 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 940 Query: 669 EAKRYR 674 ++ Sbjct: 941 IGSDWQ 946 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 100/666 (15%), Positives = 181/666 (27%), Gaps = 138/666 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLGI 86 +T A A D + L +L D H + + Sbjct: 362 GDVTAIAVAAADGEGAYIATASATPEDEKALGDWLADAEQPKALHEAK-----WAMHA-- 414 Query: 87 DIPSKRWI------CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCK 137 + + W+ T++ A +L + L E + Sbjct: 415 -LRGRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLRRELRVEET---GQEQLSLL 470 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 D + + A + D E L+ + E L + I Sbjct: 471 DDADQVDAEAAETEILSARAVLDLAAALDTELDNIESTALLS--EMELPLLEVLAVIEAS 528 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM- 256 G +D + LQ A E + E G + L++ LF + Sbjct: 529 GIAVDGTHLHDLQSRFAAEVSEAAEAAY-GVIGKQINLGSPKQLQVVLFDELEMPKTKKT 587 Query: 257 ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 L+++ ++ L +L ++ + ++ L + V+ DGR+ T Sbjct: 588 KTGYTTDAEALQNLFEKTSHPFLEH--LLAHRDATRLKVT-VDGLLKTVAEDGRIHTTFN 644 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P A +R + Sbjct: 645 QTVA-ATGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVV 679 Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G L+ AD + IE R++A ++G+ I+AF GED++ A+AF PI++V+ E R Sbjct: 680 GEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELR 739 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K M L Y L + + + F + + + +Q Sbjct: 740 RRVKAMSYGLAYG-----LSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHEVVEQA 794 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPR 548 + L G R + + E +A + V Sbjct: 795 RKDGYTSTLYGR---------RRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAM 845 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 + ++ R L + +K Sbjct: 846 INVQ-------------RSLREAGLKS--------------------------------- 859 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEG 667 + +VL E D+ V L M+ +PL Sbjct: 860 ---RMLLQVHDE---LVL--------EVVDSEREQVEQLVRDKMSSAIE--LSVPLDVSV 903 Query: 668 YEAKRY 673 + + Sbjct: 904 GTGRSW 909 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 90/663 (13%), Positives = 166/663 (25%), Gaps = 144/663 (21%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 Y + EP + + L D V + H+ + + G + Sbjct: 354 GYVFGGEPALI-----SEEDSAAFSALLSDPNVGKIGHSMKVQIHAWLG-EGYTLAGI-V 406 Query: 94 ICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + A L G A + R Sbjct: 407 GDTEIDAYLLHPDQRTYDFTDLVQRYLAI------DLGGGAQDTLGIGLDGEIVDDLAAR 460 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A + E + L + E + + + RG +D D + +L Sbjct: 461 AVATHDLRDAFARALETEEQSDALR-------EMELRVCDVLARMEQRGIAVDADQLARL 513 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILS 266 + + + L+ LF G+ ++ T L Sbjct: 514 HADFDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALE 573 Query: 267 H-------------SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 L+ +R A + L ++ D R+R T Q Sbjct: 574 QLLVKISMREDDQALAGQNFLTGLLAHRDAIKLRQS--VEGLQRSLGDDQRIRTTYQQTV 631 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A TGR S QN+ +R + +G Sbjct: 632 A-ATGRLSSTDPNLQNI------------------------HARTEEGQKIREVFVPGDG 666 Query: 374 K-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 L+ AD + IE R++A ++G+ I AF G D++ ++ F +V+ QR+ Sbjct: 667 YDYLMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKI 726 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K M L Y L + F + + + + + Q + Sbjct: 727 KAMSYGLVYG-----LSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKD 781 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 L+G R + + + E + + A++ ++ M Sbjct: 782 GFTQTLLGR---------RRYLPELSSTNRQVRESAERMALNAPIQGSA--ADIIKIAML 830 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 +R++ SSR L Sbjct: 831 NVERELAAAQLSSRVL-------------------------------------------- 846 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 +V E + V + M W +PL + Sbjct: 847 --LQVHDE-----------LVLEVAASEAEQVEAIVREQMGNA--WELSVPLSVGVGIGR 891 Query: 672 RYR 674 +R Sbjct: 892 NWR 894 >gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bifidobacterium longum DJO10A] Length = 682 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 98/666 (14%), Positives = 188/666 (28%), Gaps = 142/666 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L ++L+ E + H E + + +D+ Sbjct: 131 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 187 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 188 MFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 247 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 248 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 301 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 302 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 360 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 361 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 417 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 418 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 453 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 454 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 513 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T A + Sbjct: 514 SYGLAYG-----LSTYGL---------------------------------------AQQ 529 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ E +K + V + L Sbjct: 530 LKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIF----------------- 572 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR + + A + +Q + DI+ M Sbjct: 573 ---------GRRRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMI 614 Query: 616 NATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGY 668 A + I+L +HDE+V E V L M A +PL Sbjct: 615 RAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCG 672 Query: 669 EAKRYR 674 ++ Sbjct: 673 IGSDWQ 678 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 96/655 (14%), Positives = 186/655 (28%), Gaps = 141/655 (21%) Query: 44 LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + + + ++L+ E + H E + + +D+ T + Sbjct: 414 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 471 Query: 104 --GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + SLK A + + + + P R + Sbjct: 472 QPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLRDLAIIRSLAVT 531 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D RE + + E + + + G ++D ++ +++ A E ++ Sbjct: 532 LGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQA 585 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-------- 268 E + I + + L+ LF G+ ++ T + L Sbjct: 586 QEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNE 644 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQP 327 L+ +R + I + TL +A + SD R+ T + A TGR S Sbjct: 645 RANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-ATGRLSSVDPNL 701 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEA 386 QN+P A +R + G + L+ D + +E Sbjct: 702 QNIP------------------------NRNAAGREIRGVFVPGEGYEALMSCDYSQVEL 737 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 738 RIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG---- 793 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 T A + K+ E + Sbjct: 794 -LSTYGL---------------------------------------AQQLKIAPREAEAL 813 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + V + L R Sbjct: 814 KNRYFDTFGKVHDYLESLVANAREKGYTETIF--------------------------GR 847 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R + + A + +Q + DI+ M A + Sbjct: 848 RRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMIRAEQTLAEAHV 898 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 I+L +HDE+V E V L M A +PL ++ Sbjct: 899 KSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDWQ 951 >gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 642 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 106/709 (14%), Positives = 196/709 (27%), Gaps = 152/709 (21%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQ---AVITLCAYAWDDEPVKLWDRTE--QSAMPS-- 55 + D ET A A I CA++ + + + Sbjct: 24 IIAFDFET--APDEAYRAEEKAALDPARAHIVGCAFSASERTGIYVPVAHKIGANIDRTA 81 Query: 56 ---DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA----------RT 102 L L + + VAHN FE + GI I T A R Sbjct: 82 FFLFLADLLANPHITKVAHNIAFESSM-AYARGIVIQP-PVYDTIAAAQMTSRSAYEFRR 139 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 LK+ L E L E + D A+ + Y Sbjct: 140 LNES-GLKHLAGEL-LEESLPTFAETTGGKHFDELPAQDKETVRYGAADADFS---LRLY 194 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + R L + + E + + + G ID L+ K + E +++ + Sbjct: 195 HTFNGWFDRYLPRHRWIVEHMESPTAIYLGVMKNNGVPIDQSLMQKRKAESEMEMERIRQ 254 Query: 223 DIVKLTDGIIRSSR-QTYALRMYLFLITGIDLVD-MSEGTL-----------KSILSHSN 269 +I L + + T + YLF G+ ++ ++ + H Sbjct: 255 EITFLIGDVNIGANCSTADFKKYLFESQGLPVLKVTNKSQAALDDMAMVLLGEWCEEHKP 314 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L+ ++ + ++ + F ++ TGR + QN Sbjct: 315 ELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFALSTDTGRMNCRKPNCQN 374 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +PR+ VR+ I A +G ++ D + IE RV Sbjct: 375 MPRKSNDPIG------------------------VRNFIKAPSGHLILSLDFSQIELRVG 410 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQ 442 A+ ++ ++ + G DI+ T F ++ KE+R I K + Y Sbjct: 411 AFYCRDERMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFYG 470 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + V+ L Sbjct: 471 LFPRGLQNTLK------------------------------------FKAGVEKTLP--E 492 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 CE V +A ++ + ++ A ++ Sbjct: 493 CESVIANLKAGYRELSTWQEETKVQAAR--------------------------RLYSET 526 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----- 617 RR D++ + + R+ +Q + DIL + Sbjct: 527 WLGRRRYLPDIR---------SKEWARKSFAERCALNTPIQGTAADILKLAIVRILKGLP 577 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665 + +L +HDE+ P V + + M + P LPL A Sbjct: 578 DRPWLKPILQIHDELTFIIPAGRLDEAVAFIRACMEEQPFPEFDLPLIA 626 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 65/437 (14%), Positives = 111/437 (25%), Gaps = 51/437 (11%) Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L E + F + + +A + E Sbjct: 405 ELADYLLHPEESRRDMA--RAAFAFLGDTTSAEGLSPEAYAVHEALLSARLQPIMETELA 462 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L E L + + G ++ + + + L +I L Sbjct: 463 AQELMHLYRTV--ELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHTLAGT 520 Query: 231 IIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF G+ T L D +L + Sbjct: 521 EF-NISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTYRMWT 579 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L+ + + GR+ + + TGR S QN+P Sbjct: 580 KLRSTYLDGIGALIRPATGRVHTSFNQTV-TATGRLSSSDPNLQNIP------------- 625 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR+ G L+ AD + IE R+LA ++G+ I AF Sbjct: 626 -----------VRTEEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFR 674 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G+DI+ T A+ F P+D V+ EQR K + + Y L + + Sbjct: 675 QGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYG-----LSDFGLARDLGIGRRE 729 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 FE + + + L G R + Sbjct: 730 AGGYIDRYFERYHGVRTFLDKIVADAHANGYVTTLYGR---------RRALPALASRNYM 780 Query: 524 LTEGFACVVQEGGSISA 540 + Sbjct: 781 QRSFAERMAMNTPIQGT 797 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 72/496 (14%), Positives = 141/496 (28%), Gaps = 105/496 (21%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + +RG +++ + + + E + K +E+I K+ + L Sbjct: 563 EIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMAGEEF-NINSPKQL 621 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF + ++ T +L + + +LN + + L Sbjct: 622 GVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQVAKLKSTYTDGLEGY 681 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V DGR+ L + TGR S QN+P Sbjct: 682 VKEDGRIHCKLNQLV-TATGRLSSTEPNLQNIP------------------------IRM 716 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G V AD + IE R++A ++G++ IKA+ EDI+ T + F Sbjct: 717 ELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRITASHVFG 776 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P+D+V+ QR K + + Y + L + + F+ + Q Sbjct: 777 VPLDEVTDLQRRNAKAVNFGIIYG-----ISSFGLGENLGISRKDAEKYINDYFKAYPQV 831 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + + + E G + + + + Sbjct: 832 KKYLDSLVETGIEKGFVKTYFGRIRPI---------PELNSNNFMKRQFGERIAMNSPVQ 882 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 A++ ++ M + P SR L Sbjct: 883 GTA--ADIIKIAMNSVNARLKSEFPDSRLL------------------------------ 910 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSW 657 E++ E + +V L M K Sbjct: 911 ----------------LQIHD-----------ELLIEAKEEDKEAVAKLLKEEMMKAAE- 942 Query: 658 AKGLPLKAEGYEAKRY 673 + L + + Sbjct: 943 -LKVKLSVDVKFGYNW 957 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 96/655 (14%), Positives = 186/655 (28%), Gaps = 141/655 (21%) Query: 44 LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + + + ++L+ E + H E + + +D+ T + Sbjct: 409 IVPLPITDTLRAQFARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-PMFDTKLAGYLT 466 Query: 104 --GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 + SLK A + + + + P R + Sbjct: 467 QPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEEDPNEHRLRDLAIIRSLAVT 526 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D RE + + E + + + G ++D ++ +++ A E ++ Sbjct: 527 LGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQA 580 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-------- 268 E + I + + L+ LF G+ ++ T + L Sbjct: 581 QEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNE 639 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQP 327 L+ +R + I + TL +A + SD R+ T + A TGR S Sbjct: 640 RANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-ATGRLSSVDPNL 696 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEA 386 QN+P A +R + G + L+ D + +E Sbjct: 697 QNIP------------------------NRNAAGREIRGVFVPGEGYEALMSCDYSQVEL 732 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 733 RIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYG---- 788 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 T A + K+ E + Sbjct: 789 -LSTYGL---------------------------------------AQQLKIAPREAEAL 808 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + V + L R Sbjct: 809 KNRYFDTFGKVHDYLESLVANAREKGYTETIF--------------------------GR 842 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R + + A + +Q + DI+ M A + Sbjct: 843 RRYFPALHSTNRVAREAAERAA---------LNAPIQGSAADIMKIAMIRAEQTLAEAHV 893 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 I+L +HDE+V E V L M A +PL ++ Sbjct: 894 KSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDWQ 946 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 93/668 (13%), Positives = 166/668 (24%), Gaps = 130/668 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKT 83 A A A A D LQ +L D+ V H++ Sbjct: 338 AGDAQTVTIAAA--GGASAHVDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHAL--- 392 Query: 84 LGIDIPSKRWICTS---VLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 +G D+ T + A L E K L Sbjct: 393 MGRDLRLGGV--TMDVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEV 450 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 ++ A + ++ E +++ E L + + Sbjct: 451 DDAEAAQRAADAAATRARAVVD---LAERLDVELEQVHGATLMAEMELPLVPVLARMESI 507 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----- 252 G +D + L++ A ++ E G + L++ LF G+ Sbjct: 508 GIAVDASALNGLRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKT 567 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLIL---NRLASSGSAILKLNTLSEAVSSDGRLRG 307 L+ +L+ + + ++ + L + + D R+ Sbjct: 568 KTGYTTDAKALEELLAKETGDTPGRAFLEALLLHRETTKMRTT-VEGLIKTIGDDRRIHT 626 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T A TGR S QN+P +R Sbjct: 627 TFNQTVA-ATGRLSSTDPNLQNIP------------------------VRTEDGRRIRGS 661 Query: 368 IIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G L+ AD + IE RV+A ++G+ I+AF GED++ ++AF PID+V+ Sbjct: 662 FVVGEGYDCLLTADYSQIEMRVMAHLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTP 721 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 E R K M L Y L + Q + + F + + + Sbjct: 722 ELRRRVKAMSYGLAYG-----LSAFGLAAQLGISQGEAREQMEAYFSRFGGVRDYLQAVV 776 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 +Q + + L G R + + E Sbjct: 777 EQARKDGYTETLFGR---------RRYLPELNSDNRLKRENAERAALNAPIQGTAADII- 826 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + V D + + Sbjct: 827 --------------------KAAMLKVDADLTARGLKSRL-------------------- 846 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKA 665 + +VL E V + M +PL Sbjct: 847 -------LLQVHDE---LVL--------EVAPGELDEVRGLVVDRMYSAIE--LDVPLDV 886 Query: 666 EGYEAKRY 673 + Sbjct: 887 STGTGPNW 894 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 88/663 (13%), Positives = 165/663 (24%), Gaps = 123/663 (18%) Query: 23 AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFK 81 +T A + D TE L + + H++ + Sbjct: 333 WGRGTGDVTAVGLATAGDAAAYIDVTELDEDGEKALADWLADAARPKILHDAKGPMHALE 392 Query: 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKMEEGKALIARFCK 137 G+ + T++ A L + L + G+ L+ Sbjct: 393 -ARGMPLRGVTM-DTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEHAGGQGLLDFDTD 450 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + E + L D E L + + Sbjct: 451 EEVVGQDAMVRARAVLDLSVPLSEQLEATGGTEL--------LRDIELPLVDILGAMERT 502 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LV 254 G +D D + L+ + ++ D + G + L+ LF G+ Sbjct: 503 GIAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLPKTRRT 562 Query: 255 DMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 T L+ L +L + + + L ++V+ D R+ T Sbjct: 563 KTGYTTDADALTDLYAKTQHPFLEAMLRHRDAMRLRVT-VEGLIKSVAEDQRIHTTYIQT 621 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A TGR S QN+P A +R + Sbjct: 622 IA-ATGRLSSTDPNLQNVP------------------------IRTEAGRRIREVFVVGK 656 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G + L+ AD + IE R++A ++G++ I+AF GED++ A+ F + V+ E R+ Sbjct: 657 GYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRSK 716 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K M L Y L + F + + + + Sbjct: 717 VKAMSYGLAYG-----LSAFGLSKQLTISTGEAQGLMDEYFARFGGVRDYLREVVGEARA 771 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 ++G R + + EG + + Sbjct: 772 TGYTATMLGR---------RRYLPDLTSDNRQRREGAERMALNAPIQGSAADII------ 816 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 +L V + Sbjct: 817 ---------------KLAMKGVDSALRESGAKSR-------------------------- 835 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEA 670 + +VL E + V L M + +PL Sbjct: 836 -MLLQVHDE---LVL--------EVAEGERDDVEALVRAEMGRAVE--MDVPLDVSVGLG 881 Query: 671 KRY 673 + Sbjct: 882 HSW 884 >gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum] Length = 872 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 94/656 (14%), Positives = 180/656 (27%), Gaps = 172/656 (26%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK------TLGIDIPSK 91 D + + + + + + + RDE F++ + LGI Sbjct: 363 DGDQANFYPFSSEEEVLKRMSAW-RDEGKAVWC----FDQTRLYRKCPRFFALGIPF--- 414 Query: 92 RWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 ++ A L+N ++ Sbjct: 415 -VFDATIAAYLLEPGHRDYLLENLAARYFLTDTS-------------------------- 447 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + + D L + E L + + G RID + Sbjct: 448 --DRPRLVRNVLSKLWEDAVKE----GLLELVQSIEIPLGRILYQMEVLGIRIDRQALES 501 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 +E I ++L+E+I +L + L+ G+ T + L Sbjct: 502 ARESIEALARELEEEIYRLAGSRFTIL-SPKQVGEILYGKLGLPTARKGKTGYSTDEETL 560 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + + IL ++ +S V + GRL G + TGR S Sbjct: 561 TGLSGLHPLPEKILAYRQMKKLLSTYVDPISRGVDAQGRLHGQFNQTV-TATGRLSSSNP 619 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P A +R C IA + L+ AD + IE Sbjct: 620 NLQNIP------------------------MRSPAGREIRKCFIAGENRVLLSADYSQIE 655 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA + + + F EDI+ T F D V+ E R K + Sbjct: 656 LRLLAHFSEDPELMAVFERNEDIHARTARLLFG---DPVTPETRRKAKTIN--------- 703 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G+ ++ + + Sbjct: 704 -----FGILYGMS------------------------------AFSLSLDLGVEPPEAQA 728 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + V L+ + E + + Sbjct: 729 FIDRYFGAFPKVGPLFDSILEEAKKTGEVRTIL--------------------------G 762 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGK-LTENIVQAISRDILCEGMKN---ATKNG 621 R+ ++ ++ R R YG + ++Q + D++ + M + K+ Sbjct: 763 RKRRIPEL----------SAPDRRSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDR 812 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 D+++ VHDE++ E + T+ SLM +PL + K + Sbjct: 813 PEVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA--LRLKVPLIVQVGHGKNW 866 >gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 1003 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 95/704 (13%), Positives = 184/704 (26%), Gaps = 157/704 (22%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLF 75 K + A E + D L +L DE + Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKSTSLWIDTRTIDPELDAALAAWLSDEAARKIV----M 461 Query: 76 ERIL---FKKTLGIDIPSKRWICTSVLARTNGL---------PSSLKNACL-ALNFSEHL 122 + + + G ++ ++ + G +++ L + Sbjct: 462 DLKVQRKLLRAYGYELAG-AVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKEP 520 Query: 123 TKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 E +A + F ++ P D R + + R + E +L Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPG-EAEPVDNLRYFTQISRIIHEL--ARLLHYEMEEHGQL 577 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE--------DIVKLTD 229 + E L + + G + L+ +L + + + E ++ Sbjct: 578 KVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATEDG 637 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHS----NITQLAKDLI 278 + L+ LF G+ ++ +LS + L Sbjct: 638 EEPLNLASVKQLQTVLFETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGALA 697 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 R + + L +A + DGR+ T Q GA+ TGR S QN+P Sbjct: 698 AYRDNIKLAQT--VEGLQKAATEDGRVHTTFQQ-GAASTGRLSSTAPNLQNIP------- 747 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-------LVVADLAGIEARVLAW 391 +R I + L+ AD + IE R++ Sbjct: 748 -----------------IRTEEGRRIRGAFIVAPEPIDGVEYEGLLTADYSQIEMRIMVH 790 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ I A+ GED++ ++ F + V+ EQR+ K M L Y Sbjct: 791 LAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYG-----LSRF 845 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L++ T+ F+ + + + Q + + + G R Sbjct: 846 GLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGR---------R 896 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + E ++ Sbjct: 897 RVLPDLDSPNRVRREAAERAALNAPIQGTAADII---------------------KIAMI 935 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 ++ L M L VHDE Sbjct: 936 NIHRRLREEG----------------------------LKTRML----------LQVHDE 957 Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 I+ E + L M+ S +PL + K ++ Sbjct: 958 IILEVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999 >gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi] gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi] Length = 858 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 82/654 (12%), Positives = 167/654 (25%), Gaps = 156/654 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + ++ + + ++ + L V+ + HN R +F T + Sbjct: 327 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPAT---EKMLDS 383 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + GK + + + + Sbjct: 384 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 421 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + E +++R L + + G +++ + +L + Sbjct: 422 TLIAIHEKLKQRLFQEKLFTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 475 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKS 263 Q L+++I L G + L LF G+ + L++ Sbjct: 476 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEA 534 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + ILN S + L + V DGR+ + + TGR S Sbjct: 535 LEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA-TATGRLSS 590 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R IA G K++ AD + Sbjct: 591 SNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADYS 626 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A +AFAN +DI+ T + F Sbjct: 627 QIELRLLAHVANVAAFKEAFANEQDIHDITARQVFGV----------------------- 663 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + ++ + + A + + Sbjct: 664 -----------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + + + Sbjct: 701 AAEYINYYFSCYPEIKVYMEKAVSIARLHGY--------------------------VET 734 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNG 621 RR D+ Y+ R Q + DI+ + Sbjct: 735 LFGRRCFVRDINNTIPYVRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQLK 785 Query: 622 Y-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 I+L VHDE++ E D + + +M +PL+ E + Sbjct: 786 VGKIILQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNW 837 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 86/660 (13%), Positives = 172/660 (26%), Gaps = 146/660 (22%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSL-----FERILFKKTLGI 86 L E + + ++ K LG Sbjct: 343 CTSSNKSIYIPLFHIG--------LLESNIDLEECQKLFFSLKGKLYTYDLKELLK-LGF 393 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNAC---LALNFSEHLTKMEEGKALIARFCKGSIDSP 143 K + + L K+ K I S + Sbjct: 394 SFQ-KPVYDMMIAYHLVSSQTKEDYTSIGQYYLKTIAEDEKIVFAKQKIETLSIDSYGNF 452 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 ++ + L + +EL L + E L + ++ +G +ID Sbjct: 453 LLKRSQILYSCLDSLEKDLK------EKELENVLW---ETELPLIPVLASMEKQGIKIDR 503 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 K + ++ L+++I K + L LFL + ++ T Sbjct: 504 KYFQKYSLELNEKLVLLEKEIWKEAGEEF-NINSPKQLGEILFLKLNLPTGKKTKTGFST 562 Query: 261 LKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 +L + + +L + ++ + + V R+ G + TGR Sbjct: 563 DVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMVKFGDRIHTCYHQIG-TVTGR 621 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +R IA +G KL+ Sbjct: 622 LSSSDPNLQNIP------------------------VKTEEGIRIRQGFIARDGWKLLSI 657 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + +E RVLA ++ ++ +KA+ +D++ T K F Sbjct: 658 DYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIF---------------------- 695 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + + A + + Sbjct: 696 ---------------------ELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGIS 734 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 K + ++ V Q ++ E +R+ + R K Sbjct: 735 VKDAAEYIKRYFEQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN--- 791 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT- 618 Q R +VQ + +IL + M Sbjct: 792 --------------------------QAERMA------VNTVVQGTAAEILKKVMIKIYS 819 Query: 619 ----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E + V TL + M + + L+ + Sbjct: 820 WLLGKTDIYLLLQVHDELIFEIQEERVEEYVKTLTNFMKNTIQL-EEVELEVNTNIGNTW 878 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 94/657 (14%), Positives = 189/657 (28%), Gaps = 120/657 (18%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET-VMCVAHNSLFERILFKKTLGID 87 + A+A D D T L + + H+ + G Sbjct: 329 DLRAIAFATADGEGAYVDVTAMDQADDAALAAWLADPAIRKTGHDLKTPLHAI-RARGWV 387 Query: 88 IPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + T++ A L + L E ++ + G ++ G + Sbjct: 388 LSGLAM-DTALAAYLVRPGQRTFELDDLALRYLHRELRSETDGGDGQLSLLD-GGAEGLE 445 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + V+A +F + E + + L++ E L + + G +DL+ Sbjct: 446 QKEIQDELVKARAIFELAGALEKELEQIGGAK--LLAELELPLLEVITELEIAGVAVDLE 503 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TL 261 + L+ + E+ + G + L++ LF G+ ++ T Sbjct: 504 QLTTLEAHYLSRVTQAAEEAYAVI-GKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTD 562 Query: 262 KSILSHSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 L +L ++ + L ++V+ DGR+ TL A TGR Sbjct: 563 AEALQGLFEKTEHPFLQHMLEHRDATKLRTT-VEGLIKSVADDGRIHTTLLQTIA-ATGR 620 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P +R + G L+ Sbjct: 621 LSSTEPNLQNIP------------------------VRTEEGRRIRDAFVVGEGFTELMT 656 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ ++ I+AF +GED++ ++AF+ P ++++ E R K M Sbjct: 657 ADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPELRYRVKAMSYG 716 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 L Y L + + + F+ + + + + + + Sbjct: 717 LAYG-----LSAYGLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETV 771 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 G R + + E + SA + V L + Sbjct: 772 FGR---------RRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVH----- 817 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R LV + +K + Sbjct: 818 --------RALVEAKLKSRI------------------------------------LLQV 833 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 +V E + + L M +A +PL+ + + Sbjct: 834 HDE-----------LVLEVAEGEKEQLEQLVREGMGSA--YALAVPLEVSVGYGRSW 877 >gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389] gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389] Length = 871 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 85/640 (13%), Positives = 165/640 (25%), Gaps = 152/640 (23%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + + L D+++ + ++ L K ++ Sbjct: 368 ADNEWFTDIIFNLLTDQSIKKITYSLK---PLLKFYASRAQQITAIEDLELMNYALSAGL 424 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 KN + + Sbjct: 425 PQKNL---------------------FEAVEKEATIEEAAKIVVGFIDLY-------QQT 456 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + K + + + + + G ++D + + +L E KL+E+I L Sbjct: 457 ILELKDNKAFRIYKEIDLPVCFVIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVL 516 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNIT-QLAKDLILNR 281 + + L LF + S T IL + DL+L Sbjct: 517 SGMKF-NIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRW 575 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++L + + + R T ++ TGR S QN+P Sbjct: 576 RQLTKLKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVP---------- 625 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + +R +A G KL+ AD + IE R+L+ IA +A Sbjct: 626 --------------IRSGEGNKIRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQA 671 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F N +DI+ T + FN ++++ E R K + G+ Sbjct: 672 FINKDDIHTQTACQIFNLQKEELTSEHRRKAKAIN--------------FGIIYGIS--- 714 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + + T K + A+++GV + Sbjct: 715 ---------------------------AFGLAKQLNVSNTEAAEYIKKYFAEYKGVQEYM 747 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + R+ + Sbjct: 748 EATKSFAQANGYVTDFF--------------------------GRKCFVPLINDKR---- 777 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635 R +Q + DI+ M K +VL +HDE++ E Sbjct: 778 -LKQFAERAAINAP------IQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFE 830 Query: 636 TPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 P ++ + +M S +P+ E + Sbjct: 831 APIDEIETIMPIIKQIMEN--STNMDVPIITEIRAGNNWM 868 >gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] Length = 885 Score = 229 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 77/656 (11%), Positives = 175/656 (26%), Gaps = 138/656 (21%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + + E S L + +D+ V A+N + + Sbjct: 351 LGFGIS-NKEKNYYIPAAIISDKADFLKK-FKDKNVN--AYNIK-------ELFKSGLEY 399 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM---EEGKALIARFCKGSIDSPPYDC 147 K + ++ G ++ + K + + + P Sbjct: 400 KDYFDIMLVWYVLGTEAAQD-------LESIIFSEFQVLLEKYEVEFKKQNMDEVSPERK 452 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +++ + E + + L + + +G ID D Sbjct: 453 AEFLTKRSYYMTRLKEILGHRLEAEGLNNVYENIEK--KLVPVLADMEKKGILIDPDYFG 510 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263 K + +++++I L + L LF +D V ++ ++ Sbjct: 511 KYGNELKNNLAEIEKNIYGLAGEEF-NINSPKQLSEILFEKMMLDPVKKTKTGYSTDVEV 569 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + + + IL + + L + S+ R+ T G + TGR S Sbjct: 570 LEVLAAQGVEVAEKILEYRGYTKLLTTYVEPLPKLADSENRIHTTFHQNG-TATGRLSSS 628 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R ++ G + D + Sbjct: 629 NPNIQNIP------------------------VKTDEGIKIRRGFVSEEGWSFISFDYSQ 664 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++ ++ I A+ +D++ T K F ++ Sbjct: 665 IELRVLAELSEDETLILAYQKDKDLHDLTARKLFFKTDEEP------------------- 705 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + + + + K+ Sbjct: 706 ------------------------VSREERSIAKVINFSILYGKTPFGLSKELKIPMGDA 741 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 +L + ++ V + + RR Sbjct: 742 KLYINKYFEEYPRVRTFLNSVLQEAKLNGFVETLYGTRRY-------------------- 781 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----T 618 + +N++ + + +VQ + +I+ M Sbjct: 782 -------------ITGINSSNKNIEAQA--DRMAVNTVVQGTAANIIKIVMVKLYEEFKD 826 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 K +++L VHDE++ E + + + ++M K + L A G K + Sbjct: 827 KEDINMLLQVHDELIFEVKNESVDKYLKEIDNIMENTIKL-KNVRLAANGNVGKNW 881 >gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7] gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7] Length = 855 Score = 229 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 87/697 (12%), Positives = 177/697 (25%), Gaps = 159/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 + D ET + YA + + + + D L + L Sbjct: 161 IAFDSETSAL----------YARDGYLLGVSMSHQEYQGVYIDSDSITEVAVHYLQKILD 210 Query: 63 DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114 + V HN F+ + LG+ +R T + LK+ Sbjct: 211 SKNHQIVFHNLKFDMHFYSYHLGLSFEKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ + L + + + + Y +D +AT L Sbjct: 271 YTDMGDYDFE------LDKFKEDYCKAHKIKKEDFSYDLIPFDIMWPYAAKDTDATLRLH 324 Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +P + L L Q + DRG I +D + + Q + K E Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQYQLTHNLNKAREK 384 Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270 + + + LR+ LF G+ ++ T L+ Sbjct: 385 LYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTNAEALNELAT 444 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + ++ +DG +R + + S Q L Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 PR E ++ C++A G +++ DL E A Sbjct: 505 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 537 Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438 ++G+ + F N D + F + R K + Sbjct: 538 VLSGDRNMQQVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAITFG 597 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G ++ Q K+ F + Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + + + + Sbjct: 630 TVADAKDYIETYFGQFPQLKRWIDKCHDQIK--------------------------NFG 663 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I R+ ++ + + + I+Q+ S D L G +A Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAIDAD 714 Query: 619 K--------NGYDIVLTVHDEIVSETPDTPYFSVGTL 647 + IV+ VHD +V+ + + Sbjct: 715 EEILSLGLGKEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304] gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304] Length = 976 Score = 229 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 79/533 (14%), Positives = 157/533 (29%), Gaps = 136/533 (25%) Query: 171 RELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + P+ + E + + + G +D + + + A + + Sbjct: 547 LALHQLFYPVLEKRQEISLLKDIELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQA 606 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKD 276 + I G + + L+ LF G++ ++ T + L I + + Sbjct: 607 E-HIAWDQAGKQINLQSPKQLQAVLFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNE 665 Query: 277 L-------ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L + + + +SDGR+ T + A TGR S QN Sbjct: 666 RANTFLGALLRHREVNKLKQIVQTLMDSVNTSDGRIHTTFEQTVA-ATGRLSSTDPNLQN 724 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARV 388 +P + +R+ + S+G L+ +D + +E R+ Sbjct: 725 IP------------------------NRNVEGREIRAAFVPSDGYLSLLSSDYSQVELRL 760 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 761 MAHLSGDEALIEAFRSGADFHKYVASLVYQVPLDQITPDQRSHIKAMSYGLAYG-----L 815 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + + + +K Sbjct: 816 STYGL---------------------------------------AQQLGISPAQSDQLKA 836 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + V + L RR Sbjct: 837 KYFSTFGKVHDYLESLVSQAKKRGYTTTMF--------------------------GRRR 870 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNG--Y 622 + D+ L A + +Q + DI+ M + G Sbjct: 871 YFPDLLSSRRQLRDAAQRA---------ALNAPIQGSAADIMKIAMNKAATSLDEAGVKS 921 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 I+L +HDE+V E V L M + A +PL ++ Sbjct: 922 RIILQIHDELVVELASGEEEEVTALVKNAMEEAVELA--VPLDVSTGIGSDWQ 972 >gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213] gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213] Length = 951 Score = 229 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 104/678 (15%), Positives = 198/678 (29%), Gaps = 156/678 (23%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + CA A + + S++ + L ++L+ E + H E + G+ Sbjct: 395 AHVQACAVAT-ASSAAIIEAPMASSVQTALDRFLKAEHFRTIVHGYK-ELLHLLSAAGLG 452 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + T + LN + + P Sbjct: 453 MAL-PMFDTKLGGYLAQP----DFHADNLNQAAEHFLDI---------HVVDAEQPAQGV 498 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDR 197 + + E D+ REL L P+ D E + + + Sbjct: 499 LDFDDEHTEEDLNERRVHDLAVIRELAVTLGPVIDERRQYWLMRAIELPVSRVLHGMEQS 558 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +ID + +++ A + ++ E + G I + + L+ LF+ G+ + Sbjct: 559 GAKIDRSRLTDMRDRFAADARQAQEMAWQYAGGEI-NLQSPKQLQKVLFVDMGLKPTKRT 617 Query: 258 E----GTLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS-DGR 304 + T + L + I + + L+ +R + I + TL +A + D R Sbjct: 618 KNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRETNKLKQI--VQTLIDATNKADER 675 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T + A TGR S QN+P + Sbjct: 676 IHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAVGREI 710 Query: 365 RSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 RS + G + L+ D + +E R++A ++G++ I+AF +G D + + + P+D+ Sbjct: 711 RSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQ 770 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++ +QR+ K M L Y T Sbjct: 771 ITGDQRSHVKAMSYGLAYG-----LSTYGL------------------------------ 795 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A + + E +K + V + L Sbjct: 796 ---------AQQLNIAQREAEALKNRYFDTFGKVHDYLESLVATAREKGYTETIF----- 841 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 RR + ++ A + +Q Sbjct: 842 ---------------------GRRRYFPALRSTNRMARDAAERA---------ALNAPIQ 871 Query: 604 AISRDILCEGMKN----ATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPS 656 + DI+ M + G I+L +HDE+V E V L M Sbjct: 872 GSAADIMKIAMIRAGQALDEAGVKSRIILQIHDELVVEIAPGESEQVTELIRNAMEHAVD 931 Query: 657 WAKGLPLKAEGYEAKRYR 674 A +PL ++ Sbjct: 932 LA--VPLDVSCGIGSDWQ 947 >gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] Length = 881 Score = 229 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 87/662 (13%), Positives = 175/662 (26%), Gaps = 147/662 (22%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERI---LFKKTLGIDIP 89 A+AW ++ S P L Q L + + + ++ + LG++I Sbjct: 341 AFAWGNQETIYV-----SQNPDLLRQPLFTKVLEKPI---LTYDFKRTKVLLSHLGVEIS 392 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + L + ++ L S ++ + Sbjct: 393 EAAFD---------------ARLANYLLSNVDDNELATIARLHTSISLESDEAVYGKGVK 437 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYR 200 LF ++ L L++ E L + + G + Sbjct: 438 RAFPAKDLLFAHLARKVAVLATSKPVMLEKLAENGQSDLYYKIELPLANVLAKMEIAGIK 497 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVD 255 ++ ++++ E L ++I L + L LF + Sbjct: 498 VNKLTLMEMAEQNRNIIDALTQEIYDLAGEEF-NINSPKQLGSILFEKMQLPLTMTKKTK 556 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 T +L IL+ + L L + + DG++ + Sbjct: 557 TGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQDYIMEDGKIHTRYVQ-DLT 615 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374 +TGR S QN+P +R S + Sbjct: 616 QTGRLSSTDPNLQNIP------------------------IRMEQGRLIRKAFTPSSDDW 651 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGK 433 L+ +D + IE RVLA I+G++ I AF + DI+ T + F + V+ R K Sbjct: 652 LLLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAK 711 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + + Y L + + + FE + + + + + + Sbjct: 712 AVNFGIVYG-----ISDFGLSNNLGISRQKARDYIDTYFERYPGIKKYMDAVVREAKDKG 766 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMR 552 + L EL + ++ + SA + + + + Sbjct: 767 YVETLFKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLD 817 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 + D + Sbjct: 818 KALVDGEFK-------------------------------------------------AK 828 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + IVL E P +V L +M A +PL+A+ + Sbjct: 829 MLLQVHDE---IVL--------EVPKQELAAVRQLVKEIMEDAVDLA--VPLRADENSGQ 875 Query: 672 RY 673 + Sbjct: 876 SW 877 >gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1] Length = 924 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 102/762 (13%), Positives = 208/762 (27%), Gaps = 191/762 (25%) Query: 2 SKLFIDIETRSPQP------LPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSA- 52 S++ ID+ET P + K + AY ++Q I + + Sbjct: 207 SRVVIDLETVKTNPFIEKVTMKKTTLEAYPMSQQPKIVGIGLSDRSGYGCAIPLYHRENL 266 Query: 53 --------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L + L E + +AHN F+ + +L I + W T ++ Sbjct: 267 MKGNQIGTIVKFLRKLLEREDLEFIAHNGKFDIRWLRASLDIYLDISIW-DTMLI-HIID 324 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L + E + + P + + W + Y Sbjct: 325 YRGERYSWSKRLAWLET--------DMGGYDDALDGEKPKGEDEGNYDLIPWDILKVYLA 376 Query: 165 RDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L ++ IPL + + I G +D + + L+ Sbjct: 377 DDCDVTFRLSEKYIPLVEENEEKKWLWENIMVPGYYTLLDIEMDGIHVDREWLEVLRVSY 436 Query: 214 AQERKKLDEDIVKLTDG------------------------------------------- 230 +E +L++ + + +G Sbjct: 437 EKEISRLEDKMREFPEGVAMEREMRDKWKERVMIGNIKSANRTPEQQDKFKKYKKYDPSK 496 Query: 231 --IIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + T L LF G++ + T L +++ Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGAPSTNDDSLKFMGSQSDFVKVLMEFRNG 556 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++ LS + D + + +G + TGR S Q PR+ + + Sbjct: 557 NHLYNNFVSKLSLMIDPDNIVHPSYNIHG-TVTGRLSSNEPNAQQFPRKVNTPTLFQYNF 615 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + +G +V D + +E R+L + I + + Sbjct: 616 EIKKMFNSRFG----------------DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRS 659 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ + AF I++VSK+QR K ++ + YQ A+ G+ Sbjct: 660 GADLHKAVASDAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGI------- 712 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + CE+ K + + V + +D Sbjct: 713 --------------------------------TMSEDECEIFIKKYFKRFPKVSKWIRDT 740 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + + A R + + + Sbjct: 741 KKHVKDISTVKTLTGATRNLPDIDSIDQSKANE--------------------------- 773 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 R+ +Q D + + I +TVHD IV + P Sbjct: 774 --AERQA------VNTPIQGTGSDCTLMSLILINQWLRESGLRSRICITVHDSIVLDCPK 825 Query: 639 TPY-FSVGTLCSLMTKNPSWAK------GLPLKAEGYEAKRY 673 + +M + + +P+ +E + Y Sbjct: 826 DEVLEVAKKVKHIMENLGEYNEFYKFLGDVPILSEMEIGRNY 867 >gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] Length = 948 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 92/615 (14%), Positives = 182/615 (29%), Gaps = 140/615 (22%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140 G+++ + T + L+ + E F + Sbjct: 445 GVEL-PEPLFDTKLAGYLAHPDFHADTLEQVAAHFLDL-HIEAQAEAATQGTLDFDEPEE 502 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + D L EY + L+ E + + + G + Sbjct: 503 NDSKNDELILTRTAIVGLLAEYLA--GVLDKREQFGLLKSI--ELPVSQVLHGMEQVGAQ 558 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 +D+ ++++++ +A + + ++ G + + L+ LF G+ ++ Sbjct: 559 VDMARLVQMRDQLAADAAQ-AQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPTKKTKSG 617 Query: 260 ---TLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 T + L Q L+++R + I + TL +A + DGR+ Sbjct: 618 SYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHT 675 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + A TGR S QN+P A +RS Sbjct: 676 TFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPAGREIRSA 710 Query: 368 IIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G + L+ +D + +E R++A ++G++ I+AF +G+D + + + P+D ++ Sbjct: 711 FVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITS 770 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 +QR+ K M L Y T Sbjct: 771 DQRSHVKAMSYGLAY-----GLSTYGL--------------------------------- 792 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A + K+ E +K + A V + + L Sbjct: 793 ------AQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIF-------- 838 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR + +K + A + +Q + Sbjct: 839 ------------------GRRRYFPGLKSPNRAVRDAAERA---------ALNAPIQGSA 871 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 DI+ M A G ++L +HDE+V E L M + A Sbjct: 872 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA- 930 Query: 660 GLPLKAEGYEAKRYR 674 +PL ++ Sbjct: 931 -VPLDVSTGIGSDWQ 944 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 94/641 (14%), Positives = 177/641 (27%), Gaps = 132/641 (20%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111 + L +L DE+ H + + G + T++ A +L + Sbjct: 362 AALADWLADESRPKAVHEVKWALHAL-RGRGWTLTGVT-SDTALAAYLVRPGQRTFNLDD 419 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L E + G D+ QA + D E R Sbjct: 420 LALRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQAVAELAD--TLDTELER 477 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L + E L + + G +D+D + L+ AQ + E ++ G Sbjct: 478 IDSSAL--LQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAAESAYEVI-GE 534 Query: 232 IRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLAS 284 + L+ LF + L S+ + L +L + Sbjct: 535 QVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFL--KHLLEHRDA 592 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + + L + V+ D R+ T A TGR S QN+P Sbjct: 593 TRLRVT-VEGLQKTVADDQRIHTTFNQTVA-ATGRLSSTDPNLQNIP------------- 637 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKK-----------LVVADLAGIEARVLAWIA 393 A +R + + G L+ AD + IE R++A ++ Sbjct: 638 -----------VRTEAGRQIRHAFVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLS 686 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ I+AF GED++ ++AF P+D+V + R+ K M L Y Sbjct: 687 EDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYG-----LSAYGL 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + + + + F+ + + + ++ L G R Sbjct: 742 AAQLGISREEAKQQMEAYFDRFGGVRDYLHRVVEEARRNEYTATLFGR---------RRY 792 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + + A++ ++ M ++ + SSR L Sbjct: 793 LPDLNSDNFQRRQSAERMALNAPIQGTA--ADIIKVAMINVQKRLRTEQLSSRML----- 845 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +V Sbjct: 846 -----------------------------------------LQVHDE-----------LV 853 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E +V L M +PL+ + + Sbjct: 854 IEVATGEQAAVEALVREEMGGAID--LSVPLEVSVGYGRSW 892 >gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] Length = 817 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 82/654 (12%), Positives = 167/654 (25%), Gaps = 156/654 (23%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + ++ + + ++ + L V+ + HN R +F T + Sbjct: 286 LSLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPAT---EKMLDS 342 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + GK + + + + Sbjct: 343 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 380 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + E +++R L + + G +++ + +L + Sbjct: 381 TLIAIHEKLKQRLFQEKLFTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 434 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLKS 263 Q L+++I L G + L LF G+ + L++ Sbjct: 435 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEA 493 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + ILN S + L + V DGR+ + + TGR S Sbjct: 494 LEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA-TATGRLSS 549 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R IA G K++ AD + Sbjct: 550 SNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADYS 585 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +A +AFAN +DI+ T + F Sbjct: 586 QIELRLLAHVANVAAFKEAFANEQDIHDITARQVFGV----------------------- 622 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + ++ + + A + + Sbjct: 623 -----------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 659 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + + + + Sbjct: 660 AAEYINYYFSCYPEIKVYMEKAVSIARLHGY--------------------------VET 693 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNG 621 RR D+ Y+ R Q + DI+ + Sbjct: 694 LFGRRCFVRDINNTIPYVRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQLK 744 Query: 622 Y-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 I+L VHDE++ E D + + +M +PL+ E + Sbjct: 745 VGKIILQVHDELLVEVEDEKVQETAKLMKDIMENAIE--ISVPLEVEIKVGDNW 796 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 88/642 (13%), Positives = 158/642 (24%), Gaps = 126/642 (19%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D TE +L D V HN+ +F + G I T++ A Sbjct: 374 WFDPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEH-GWTIEGVTM-DTALAAYL 431 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L L +A ++ + + Sbjct: 432 VKPGRRSFDLDALTLEYLGRELAPP--AAADGQLAFGADEEAEADALMVQARAILDLGEA 489 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 F K A L D E L + G D + ++++ A + Sbjct: 490 FTGRLKEVGAADL--------LGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQ 541 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQL 273 + + + L+ LF G+ ++ + Sbjct: 542 QAVREAHAAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENE 600 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L + + + L + +++DGR+ T A TGR S QN+P Sbjct: 601 LPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 656 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392 +R + G + L+ AD + IE RV+A + Sbjct: 657 ----------------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHL 694 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + I+AF +GED++ T ++ F V E R K M L Y Sbjct: 695 SEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYG-----LSAFG 749 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L ++ + FE + + + ++ L G R Sbjct: 750 LSQQLGIEAAEARTLMEAYFERFGGVRDYLRRVVEEARATGYTATLFGR---------RR 800 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + E + +L L Sbjct: 801 YLPDLNSDNRQRREAAERMALNAPIQGTAADIVKI------------AMLRVGEALR--- 845 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + EI Sbjct: 846 ---------------------------------AAGLASRMLLQVHD-----------EI 861 Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V E V L MT PL + + Sbjct: 862 VLEIAPGERERVEALLRREMTTAVHLKA--PLDVSVGVGRDW 901 >gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5] Length = 773 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 143/393 (36%), Positives = 209/393 (53%), Gaps = 19/393 (4%) Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L+ Sbjct: 3 RLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELL 62 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 RL S ++ K L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR Sbjct: 63 SVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPN 122 Query: 339 ILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + I+AL G D + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE Sbjct: 123 TIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGE 182 Query: 396 DWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +WK+KAF+ ++ Y YA+AFN + V+K+QR IGKVMEL LGY GG F T Sbjct: 183 NWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLT 242 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 A GLDL + ++ +A S + + + + +K+ C+ +K+ W Sbjct: 243 FALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMW 301 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R H + W D+ + +Q G +L +RR K + I LPS R L Y Sbjct: 302 RNAHPQTVSFWYDIEDAVKQAIQSPGI-----AFKCRKLSVRRDKGWLRICLPSGRSLCY 356 Query: 571 SDVKGDC---SYLNT--ATSQLMRERTYGGKLT 598 + + +Y+ T + + R +TYGGKL Sbjct: 357 PSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] Length = 887 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 91/661 (13%), Positives = 186/661 (28%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 I A+ ++ + E + + + L+ + + H+ K Sbjct: 348 EILALAFLFECQ-GYFLPLEEALFSPFSLEFLQNAFSKMLQHACI--IGHDLKPLLSFLK 404 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + T +LA L + I F S Sbjct: 405 AKYQVSLENIHIQDTQILAFLKNPEKVGFDEVLKEYLK------EDLILHEKIKDFKTKS 458 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + A + EY +++ L + E + + +G+ Sbjct: 459 KAEKLERLNVE--LNALKRLCEYFEKEGLEE----DLLSLAKEIEMPFMKVLMNMEFQGF 512 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E K L+ I+ L + L L+ + + S Sbjct: 513 KIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQLSGVLYEKLNLP-KNKSHS 570 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + + + L D ++ T G + TGR Sbjct: 571 TDEKNLLKIMDKHPSIPLILEYRELNKLSNTYITPLLRLKDKDDKIHTTFIQTG-TATGR 629 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R I+S L+ Sbjct: 630 LSSHSPNLQNIP------------------------VRSSKGLLIRKGFISSSKEYCLLG 665 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F + +KE+R+I K + Sbjct: 666 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG---ENSAKEKRSIAKSINF- 721 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 722 -------------GLVYGMGS------------------------------KKLSETLNI 738 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + ++ E + + RV + + + Sbjct: 739 PLNEAKSYIEAYFKRFPSIKDYLNNMQEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYL 798 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 799 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 822 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ +A +PL+ + AKR Sbjct: 823 ERFKNDSSVRLLLQVHDELIFEIEEKNALELQQEIQRILNNEV-YALRVPLETSAFIAKR 881 Query: 673 Y 673 + Sbjct: 882 W 882 >gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 1015 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 90/692 (13%), Positives = 187/692 (27%), Gaps = 161/692 (23%) Query: 28 AVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + A + D + A+ L ++L+ + + V H+ K LG+ Sbjct: 436 ADCLIILIANKAAILYTTDLQSSDQALLEMLRKFLQKNSSITVLHDYK-------KHLGL 488 Query: 87 ----------DIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIA 133 + + T + + +L+N + G+ Sbjct: 489 LKSLKLFDSNNSFGTPLLDTRLASYLLEPDFRAETLENMAEHY-LDIQSDEDNLGENEAK 547 Query: 134 RFCKGSIDSPPYDCTRANHVQA-----WQLFGEYCKRDVEATRELFKRLIP------LSD 182 + + + + F L ++D Sbjct: 548 QGELDLLIDDGMPASEEETNEKQTQACEAKFLRTTLLIRLLALHFASTLDDRKQTGLMTD 607 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + + + + D G +D+ + + + + + + +++ G + + L+ Sbjct: 608 LEMPISRVLRGMEDVGAAVDMQRLSSMLKQFSAD-AEFAQNMAWKVAGSSVNLQSPKQLQ 666 Query: 243 MYLFLITGIDLVDMSE----GTLKSILS--------HSNITQLAKDLILNRLASSGSAIL 290 LF G+ ++ T L +Q L+ +R + I Sbjct: 667 QILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI- 725 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + +L +A D R T + TGR S QN+P Sbjct: 726 -VQSLIDAAHYDDRRIHTTFEQTIAATGRLSSADPNLQNIP------------------- 765 Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 A +R+ I + L+ D + +E R++A + + I+AF +G D + Sbjct: 766 -----NRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGVDFH 820 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + + P+++VS +QR+ K M L Y T L Sbjct: 821 KYVASLVYKIPVEQVSPDQRSHVKAMSYGLAYG-----LSTYGLAKQLS----------- 864 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + E++K + V + L Sbjct: 865 ----------------------------ISPAEAEMLKNKYFDTFGNVHDYLESLVSKAK 896 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + RR + + + A + Sbjct: 897 ELGYTETMF--------------------------GRRRYFPQLSSNNRASREAAERG-- 928 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M K ++L +HDE++ E Sbjct: 929 -------ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQAQ 981 Query: 644 VGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 V + M +PL ++ Sbjct: 982 VENIVRKAMENAVH--LDVPLNVSTGVGVDWQ 1011 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 110/597 (18%), Positives = 179/597 (29%), Gaps = 139/597 (23%) Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 +P W + A P S A L + F S+D+ Sbjct: 416 VPLAVWFDLGLAAYLLN-PESRAYAFDRLR--------------DSLFADPSVDTEGVSP 460 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 T A + + L L E L + + G ID Sbjct: 461 TDNARAAALLADVLAARLETAGLSRLVAEL------EMPLVPVLVAMERAGIGIDKTAFA 514 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKS 263 + +A L+ DIV L + R + L L+ G+ + T + Sbjct: 515 AFADEVAGRLAILETDIVALAGKPF-NPRSSQQLGEILYTDLGLKAHGKTPGGAASTSQD 573 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L D IL L + D R+ TL A+ TGR S Sbjct: 574 ALERLAGAHPLVDRILEFRKLEKLRSTYLAPMPALADRDSRIHTTLN-NMATATGRLSSS 632 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P G +R+C A G +LV AD + Sbjct: 633 NPNLQNIP------------------------IRGEFGRRMRACFTAGPGNRLVAADYSQ 668 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++GE + AFA+G DI+ T A F+ P + ++ ++R K + Sbjct: 669 IELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTINF------ 722 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + + A Sbjct: 723 --------GLLYGMGP------------------------------QKLSRDLGIKLDAA 744 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + G+ ++ + E D + Sbjct: 745 KAFIARYFERLPGLSAFYEGIVEAAKR--------------------------DGFVTTL 778 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 + RR + D+ S +SQ R+ +VQ + DI+ M A + Sbjct: 779 AGRRRLLPDIGSANS---QLSSQARRQAI------NTVVQGGAADIIKMAMLAAAGDAAL 829 Query: 624 ------IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL +HDE++ ETP+ L LMT S A +PL+ + + + Sbjct: 830 AGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLMTGVISLA--VPLEVDWGTGRTW 884 >gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda] gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 179/662 (27%), Gaps = 147/662 (22%) Query: 33 CAYAWDDEPVKLWDRTE---------QSAMPSD---LLQYLRDETVMCVAHNSLFERILF 80 ++ D + D T P +++ L D ++ + +N I Sbjct: 346 ITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFL 405 Query: 81 KKTLGIDIPSKR-WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 L +I S ++ GK ++ Sbjct: 406 LNFLRTEITSASCIDDIMLMHYILS----------------------AGKNELSLNEIIQ 443 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRG 198 + Y + H W D K L + + + + + I + G Sbjct: 444 TYNKSYSEQYSEHKVCW----LKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNG 499 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----- 253 +I++ L+ L + + L++ I ++ + L LF + + Sbjct: 500 IKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEF-NIASPKQLGEILFDVLKLPHAKVSQ 558 Query: 254 VDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 S T +L + + + DL+L + ++TL ++++ T Sbjct: 559 KTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQ 618 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++ T R S QN+P VRS +A Sbjct: 619 TSTTTSRLSSHSPNLQNIP------------------------IRSEYGLKVRSAFVAPP 654 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G K++ AD + IE R+L++ A + F GEDI+ +T A+ F D+V++E R Sbjct: 655 GSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEENRRKA 714 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y L++ F+++ + + E Sbjct: 715 KAINFGIIYG-----ISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVEH 769 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 +IG C + + S Sbjct: 770 GYVKNMIGRRCYI---------PLINSSNLTTRNFAQRAAINAPIQSTA----------- 809 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 I + +L+YS + Sbjct: 810 --SDIAKIAMIQYEKLIYSKYPA----------------------------------IKL 833 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAK 671 + +V E P+ + + S M P PLK E Sbjct: 834 -LLQVHDE-----------LVFELPEELVDTACNLIKSTMENIP--YFSFPLKVELKIGD 879 Query: 672 RY 673 + Sbjct: 880 NW 881 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 100/591 (16%), Positives = 163/591 (27%), Gaps = 127/591 (21%) Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 +P W + A N+ + + F ++D+ Sbjct: 406 LPLPTWFDLGLAAYLLNP--------EQRNYGFERLRD-------SLFADPAVDASDLSP 450 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A + + +L R E L + ++ G ID + Sbjct: 451 ADTAKAAARLADLLASRLEAAGLSDLVAR------LELPLVPVLLSMERIGIGIDTAALA 504 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKS 263 +A E +L+ I +L G + R + L L+ G+ + T + Sbjct: 505 AFGAEVATELARLEGAIRELA-GEGFNPRSSRQLGEVLYGRMGLKPRGKTPGGAASTSQE 563 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L D IL L+ L + GR+ T A+ TGR S Sbjct: 564 ALERLAGENPLVDRILEFRKLEKLRSTYLDPLPRLADAAGRIHTTFNNL-ATATGRLSSS 622 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P G +R C +A+ GKKLV AD + Sbjct: 623 NPNLQNIP------------------------IRGTLGRRMRECFVAAAGKKLVAADYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++GE + AF G DI+ T A F+ + ++R K + L Y Sbjct: 659 IELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEADIRPDERRQAKTINFGLLYGM 718 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G + L ++ + FE + + + D L G Sbjct: 719 GPQKL-----SRDLGIKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKAQGFVTTLAGR-- 771 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 R + L Sbjct: 772 -------RRLLPEIHSANSQLASQARRQAINTVVQGGAADI------------------- 805 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 M +L + M Sbjct: 806 --------------------IKMAMLAAHNDPELA-----GLGA-----AM--------- 826 Query: 624 IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VL VHDE++ ETP+ + L +LM + A +PL + + + Sbjct: 827 -VLQVHDELLLETPEAAAQAAGERLSALMCGVVALA--VPLAVDWGAGQTW 874 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 71/524 (13%), Positives = 144/524 (27%), Gaps = 116/524 (22%) Query: 161 EYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 Y D+ K L + + E L + + G +ID + ++ Sbjct: 472 LYSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDRKYFEAYSLELTEKLAL 531 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL-AK 275 L++ I + + L LFL + ++ T +L H + Sbjct: 532 LEKAIWEEAGEEF-NLNSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIA 590 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + ++ + + R+ G + TGR S QN+P Sbjct: 591 SNLLEYRKLAKLKNTYVDPIPKMTGEGDRIHTCYHQIG-TVTGRLSSSDPNLQNIP---- 645 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G KL+ D + +E RVLA ++ + Sbjct: 646 --------------------VKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKD 685 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + +KA+ +D++ T + F Sbjct: 686 ENLLKAYQEKQDLHSVTAKRIF-------------------------------------- 707 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + ++ + + + + + A + + K + A++ Sbjct: 708 -----ELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGISVKDAGEYIKRYFAQYP 762 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V Q + + RR+ + + K Sbjct: 763 RVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVK-------------------- 802 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVHD 630 SQ R +VQ + +IL + M K ++L VHD Sbjct: 803 ---------SQAERMA------VNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHD 847 Query: 631 EIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ E + L M + + + L+ + Sbjct: 848 ELIFEIQEGKLQEYEENLIRFMRETIQL-EEVELEVNTNIGDTW 890 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 72/491 (14%), Positives = 131/491 (26%), Gaps = 103/491 (20%) Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E+ L + RG +D ++ ++ + Q+ + L + +L + Sbjct: 439 LSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEF-NLN 497 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + T +L IL L+ Sbjct: 498 SPKQLAEVLFDHLKLPTKKKR-STAVDVLEGLIEEHAIIAPILEYRKYQKLYSTYAVGLT 556 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + +DG++ + + A++TGR S QN+ Sbjct: 557 KHIHADGKIHTSFNQH-ATQTGRLSSSDPNLQNI------------------------SV 591 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 + +R +AS G L+ D + IE RVL+++A E ++AF G DI+ T Sbjct: 592 RDEETRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAI 651 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F D V+ R K + + Y LD+ T E + Sbjct: 652 FGV--DDVTSTMRRQAKSVNFGIVYGMS-----EYGLSKQLDITIPEARHFITRYNEIYP 704 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + L R + + + + Sbjct: 705 NITKYMDSVVEDCLRDGYVKTLFNR---------RRYIPEIYDANRAVKDFGKRAAMNAP 755 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 ++ + N Sbjct: 756 IQGTAADII---------------------KIAMIKADELLTSNNY-------------- 780 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655 M L VHDE+V + D + L S+M Sbjct: 781 --------------KSSMI----------LQVHDELVFDVYDDELEQIQDLMVSVMEHIV 816 Query: 656 SWAKGLPLKAE 666 SW L + + Sbjct: 817 SWPIDLNVSVD 827 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 88/652 (13%), Positives = 174/652 (26%), Gaps = 135/652 (20%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68 + G+ + E I L + ++ PV ++D + + L + L DE ++ Sbjct: 1258 YCGLDMETTGLEVFGE--KIRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1315 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + N F+ + T + ++ ++ + + K Sbjct: 1316 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLSV 1368 Query: 129 K-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 + + + + L Y K + E + ++D E Sbjct: 1369 YLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQI---VNDIENKC 1425 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 L + G ++DL+ + K + I E + + K + + L Sbjct: 1426 ILPICDMELNGIKVDLENLNKSTDQILNELNVERDKLKKELKNEDINVNSQQQILKALQD 1485 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 DL + + I A L+ N L ++ ++ Sbjct: 1486 NNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAFYLKLPLHINKKTNKIH 1545 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + +GR+S Q +PRQ +R Sbjct: 1546 TTFNQLK-TFSGRFSSEKPNLQQIPRQ----------------------------KNIRE 1576 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I + ++AD IE ++ A I ++ +KA+ N D++ T + I++++K Sbjct: 1577 IFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINK 1636 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 E R + K + L ++ ++ Sbjct: 1637 EDRHVAKAINFGLL------------------------------YGMNYVNLRTYANTY- 1665 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 K+ C ++ ++G+ + S + R Sbjct: 1666 -------YNVKMNLDQCLYFYNSFFEHYKGLSRWH----NIVKQTKALEYSTLSNRKVVF 1714 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 P K VQ Sbjct: 1715 PYFSFT-------------------------------------------KALNYPVQGTC 1731 Query: 607 RDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653 DIL + KN I+L VHDEI+ E L M Sbjct: 1732 ADILKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALRILVESMEN 1783 >gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505] gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505] Length = 946 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 95/678 (14%), Positives = 175/678 (25%), Gaps = 157/678 (23%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 L + + D D T +P D L + L D + ++ G+ + Sbjct: 387 LVSLS-DGSRAVAIDLT--EILPEDETVLARLLADVERPKLVADAKGSWHALS-ARGLTL 442 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 S+ + + + D + Sbjct: 443 DGV-IADPSLAGYLCRPEQ------RSYDVETLTQRWLGIDLAAVNEGSAGGDGGSGESQ 495 Query: 149 RANHVQAWQLFG------------------EYCKRDVEATRELFKRLIPLSDGERDLWLL 190 A ++A D + L +D E + Sbjct: 496 SAFDLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLF--TDLEMPVAAT 553 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + D G +D ++ Q + E + + L+ LF Sbjct: 554 LTVMEDAGIAVDDAVLHARQTELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELK 612 Query: 251 IDLVDMSEG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + ++ T L+ + L+ +R A + L +A+ +DGR Sbjct: 613 MPKTRKTKTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQADGR 670 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T Q A TGR S QN+P + Sbjct: 671 IHTTFQQTIA-ATGRLSSTDPNLQNIP------------------------ARHEEGMRI 705 Query: 365 RSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R G L+ AD + IE R++A ++ + I+AF +GED++ A ++ Sbjct: 706 REAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLHRYVAALVHGIEVED 765 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ +QR+ K M L Y T Sbjct: 766 VTAQQRSHVKAMSYGLAY-----GLSTFGL------------------------------ 790 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A + + ++ A+ A+ V + + E Sbjct: 791 ---------ARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMF----- 836 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 RR D+ D + +Q Sbjct: 837 ---------------------GRRRYLPDLTSDNRQRREMAERA---------ALNAPIQ 866 Query: 604 AISRDILCEGMKNATKNG------YDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPS 656 + DI+ + M + I+L +HDE++ E +V L M Sbjct: 867 GSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEAEAVENLLKEQMGGAAE 926 Query: 657 WAKGLPLKAEGYEAKRYR 674 +PL + +R Sbjct: 927 --LSVPLDVAVGRGRTWR 942 >gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus] Length = 574 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 99/693 (14%), Positives = 178/693 (25%), Gaps = 163/693 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L++D ET I L DDE + D E + L + + Sbjct: 24 YLYLDTETTGN---------------RIRLVQLG-DDEKTYVIDLYEIHDITP-LRELIS 66 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNA-CLALNFSE 120 ++ V + HN F+ I T + + G SL + L ++ Sbjct: 67 EKGV--IGHNLKFDLHYLMNY---QIEPLATFDTMIASFLLGYERHSLNHLVGNLLGYTL 121 Query: 121 HLTKM-------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + A + K + + + T + Sbjct: 122 DKSYQLSDWGAPVLSDAQLKYAAKDVDVLRELFP-KLRDMLNELEGERGEELLKTRTARI 180 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 F P++ E + G +D++ + + I ++ + + + Sbjct: 181 FGLKSPVAIVEMAFVKEVAKLERNGLPVDIETLESTLKDIERKT---QKKVQEFLIKFRV 237 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L ++L + T +LS + + L+ R + Sbjct: 238 DPFSPKQVGQLLTSKYKLNLPRTQKGNVSTDDKVLSSYAHVEPVRLLLEIR-KLKKLSDK 296 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 RL + GA TGR S QN+PR+E Sbjct: 297 FKEIKENL--KGDRLYPEFKQIGA-VTGRMSSLKPNVQNVPREE---------------- 337 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R+ A G V+AD + IE R+ A E+ I+AF G+D++ Sbjct: 338 --------------RAIFKAPEGNTFVIADFSQIELRIAAEYVNEELMIRAFREGKDLHR 383 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + ++++KE+R + K + L Y AK A Sbjct: 384 YTASLVLGKREEEITKEERQLAKAINFGLIYGISAKGLAEYART---------------- 427 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 ++ E + + + Sbjct: 428 ----------------------GYGVEISEEEAETFRNRFFKNFKAFKLWH--------- 456 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + K RR Sbjct: 457 ---------------EKVKKELKEKGVFRGRTLLGRRF---------------------T 480 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDI------VLTVHDEIVSETPDTPYFSV 644 T +Q D+L + V VHDEIV E V Sbjct: 481 ATTFNDAVNYPIQGTGADLLKLAVLLFDAEAKKKKLDAKLVNLVHDEIVVECRKEVANQV 540 Query: 645 GTLCS-LMTKNPSWAK-GLPLKAEGYEAKRYRK 675 + M + +P++ E +R+ K Sbjct: 541 KEVLEKAMKQAGKIILKKVPVEVESVINERWIK 573 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 76/595 (12%), Positives = 139/595 (23%), Gaps = 115/595 (19%) Query: 90 SKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ SL A A E ++ + P Sbjct: 399 GAEVFDLALADYLLRPEERQRSLDRAASAY-LDELSAPQTAEDRTLSAVYSHLANGAPLH 457 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + + Y L E L + + G ++ + Sbjct: 458 NEQIAFYEVILAAQLYGPMSAALADANLTELYGTV--ELPLVPILAAMERTGVAVNRAAL 515 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTL 261 + ++++DI L + L LF G+ T Sbjct: 516 GRALAAANARIAEIEQDIYALAGTEF-NISSPKQLGEVLFDRLGLTSPKMKKTKTGYSTN 574 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 +L D +L S L + + D GR+ + + TGR Sbjct: 575 AEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGALIRPDTGRVHTSFNQTV-TATGRL 633 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P VR+ G L+ A Sbjct: 634 SSSDPNLQNIP------------------------VRTEEGRAVRALFEPGEGYDALLSA 669 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R+LA ++G++ I AF G+DI+ T ++ F P+ +V+ QR K + + Sbjct: 670 DYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRRSAKAVNFGI 729 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + + FE + + + L Sbjct: 730 VYG-----LSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFLDRVVADAHTNGFVTTLY 784 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G R + + Sbjct: 785 GR---------RRALPAINSRNFMQRSNAERMAMNTPIQGTAADLI-------------- 821 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 ++ + + Sbjct: 822 -------KIAMIRADAALRAAGVKSRI---------------------------LLQVHD 847 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E + V L + M+ A +PL + + K + Sbjct: 848 -----------ELVLEVVNDEIAQVTELLTAAMSGAAQLA--VPLAVDVHTGKNW 889 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 84/590 (14%), Positives = 161/590 (27%), Gaps = 127/590 (21%) Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 R S++A + N+ IA Sbjct: 412 VARIHDVSLMAYLLDPTRT--------NYGYLYLTERFSVPSIATGSVDVECVSMVKALL 463 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A A + + D+ ++ E L + G ID + + Sbjct: 464 AMDDAAVKALQDESLWDL------------YNNIELPLIHTLLVMEKNGIYIDPVKLEET 511 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 E + + ++I +L G + L + LF + ++ ++ T +L Sbjct: 512 TIKFKAELEAVQQEIYELA-GETFNINSPKQLGIILFEKMNLPVIKKTKTGYSTDAEVLD 570 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + IL + + L+ ++ R+ T + TGR S Sbjct: 571 MLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMV-TATGRLSSSDP 629 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384 QN+P +R+ G LV AD + I Sbjct: 630 NLQNIP------------------------VRTEKGREIRALFYPGEGFDTLVSADYSQI 665 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA ++G++ IKAF +G+DI+ T A+ D+V+ E+R+ K + + Y Sbjct: 666 ELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYG-- 723 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + + F + + + + M + E + G E Sbjct: 724 ---ISDFGLSRDLGITRQEAKNYIELYFSRYPKVKEYMDNMVTEAHETGKVRTMFGRMRE 780 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 L + + A++ +L M + + + Sbjct: 781 L---------PDINSRNFNRRSFAERTAMNTPIQGTA--ADIIKLAMNKVESILEEKTFK 829 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 SR L + Sbjct: 830 SRLL----------------------------------------------LQVHDE---L 840 Query: 625 VLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VL E + ++ T L M +PL + + A+ + Sbjct: 841 VL--------EVVNEELDAIQTLLKETMESIVE--LHVPLIVDVHNAENW 880 >gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I Length = 891 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 88/661 (13%), Positives = 181/661 (27%), Gaps = 144/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L I F + Sbjct: 411 AKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTKA 464 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + + F + + + + E + + +G+ Sbjct: 465 EKLELLSVELNALKRLCEYFEKGGLEENLLSLA--------REIETPFMKVLMGMEFQGF 516 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I++L + L L+ G+ + S Sbjct: 517 KIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLP-KNKSHS 574 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 575 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 633 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 634 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 669 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K + Sbjct: 670 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINF- 725 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 726 -------------GLVYGMGS------------------------------KKLSETLNI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + Sbjct: 743 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYL 802 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 803 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 826 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 827 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFIAKR 885 Query: 673 Y 673 + Sbjct: 886 W 886 >gi|242074498|ref|XP_002447185.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor] gi|241938368|gb|EES11513.1| hypothetical protein SORBIDRAFT_06g030120 [Sorghum bicolor] Length = 992 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 91/773 (11%), Positives = 196/773 (25%), Gaps = 169/773 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + +T + + + +W D + + Sbjct: 281 ACDTE--VDIDVKQETP---VGHGKVTCFSIYSGTKGAEADFGNGKTCIWVDVLDGGPDV 335 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 336 LMEFAPFFEDSSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRTDGG 392 Query: 107 SSLKNA----------CLAL-NFSEHLTKMEEGKALIARFCKGSIDSP--PYDCTRANHV 153 SL+ L + K G+ I + + P + + Sbjct: 393 YSLEGLTNDHRVMGVVSKELRKIGKRSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDR 452 Query: 154 QAWQ---------LFGEYCKRDVEATRELFKR-------LIPLSDGERDLW-LLDQTIND 196 + W Y + R+ + L + + + + Sbjct: 453 ELWICYSSLDSMSTLKLYESLKSKLERKPWTFDGCPRGSLYDFYEEYWRPFGAILVKMET 512 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---LI 248 G +D + +++++ +RK + D + +R F Sbjct: 513 AGMLVDRAYLSEIEKVAVAQRKLAADKFRNWASKYCPDAKYMNVNSDTQIRQLFFGGIEN 572 Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS-------GSAILKLNTLSE---- 297 + + + + K + R + I + Sbjct: 573 ICKPGDFLPKSKAIKVPNDETAVSEGKKVPKYRTIELFNIVEDLKTDIFTASGWPSVSGD 632 Query: 298 -AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-----------EILTQTIQ 345 + G++ L + T G + N ++ S + + Sbjct: 633 ALRNLAGKVPSDLVY----STDDECGSHSEISNCDLEDTSSYGTAYDAFGGGKEGKEACH 688 Query: 346 ALNRGETIADPLGLASD----------------CVRSCIIASNGKKLVVADLAGIEARVL 389 A+ I L S+ +R +A+ G L+VAD +E R+L Sbjct: 689 AIAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRIL 748 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A +A + AF G D + T + + V +E+ Sbjct: 749 AHLADCKSMLDAFRAGGDFHSRTAMNMYPHIREAVDEEKV------------------IL 790 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G + + + + + A K+ + K Sbjct: 791 EWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPHGLARDWKVSVKEAKDTLKL 850 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 W + + VL + + + R Sbjct: 851 WYSDRKEVLAWQMKQKQLAHEKSEVYTLL--------------------------GRSRR 884 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYD 623 + ++ S R VQ + D+ M + G+ Sbjct: 885 FPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNTRLKELGWT 935 Query: 624 IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P ++ M+K + + L + A+ + Sbjct: 936 LLLQVHDEVILEGPSESAELAKSIVVECMSKPFYGTNILKVDLAVDAKCAQNW 988 >gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695] gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695] Length = 892 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 88/661 (13%), Positives = 181/661 (27%), Gaps = 144/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 355 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 411 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L I F + Sbjct: 412 AKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTKA 465 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + + F + + + + E + + +G+ Sbjct: 466 EKLELLSVELNALKRLCEYFEKGGLEENLLSLA--------REIETPFMKVLMGMEFQGF 517 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I++L + L L+ G+ + S Sbjct: 518 KIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLP-KNKSHS 575 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 576 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 634 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 635 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 670 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K + Sbjct: 671 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINF- 726 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 727 -------------GLVYGMGS------------------------------KKLSETLNI 743 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + Sbjct: 744 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYL 803 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 804 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 827 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 828 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFIAKR 886 Query: 673 Y 673 + Sbjct: 887 W 887 >gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302] gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302] Length = 680 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 88/666 (13%), Positives = 185/666 (27%), Gaps = 146/666 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85 + A++ D + D+ E P L +L +T + V ++ + G Sbjct: 136 DLVGFAWSCGD-KLYATDKLELLQNPI-LKDFLE-KTPLKV-----YDFKKAKVLLNRFG 187 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 +D+ + + +R L + ++ +L + ++ Sbjct: 188 LDLQAPAFD-----SR----------LAKYLLSTVENNEISTIASLYGQTYLVDDETFYG 232 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195 + + + F E+ R V E L+ D E+ L + + Sbjct: 233 KGVKKAIPE-RETFLEHLARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKME 291 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-- 253 G ++ + +L++Q +KL ++I +L + L LF G + Sbjct: 292 IAGIKVKKETLLEMQAGNELVIEKLTQEIYELAGEEF-NINSPKQLGELLFENLGFPIEY 350 Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 351 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 410 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 411 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 445 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ Sbjct: 446 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPND 505 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 506 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 560 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 561 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 607 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 608 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 627 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + ++ + M + +PL A+ Sbjct: 628 ----MLLQVHDE---IVL--------EVPKSELAAIKKIVKQTMEEAIQ--LSVPLIADE 670 Query: 668 YEAKRY 673 E + Sbjct: 671 NEGVTW 676 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 80/665 (12%), Positives = 174/665 (26%), Gaps = 140/665 (21%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKKTLG 85 A + D + ++L Q+L D + H++ L G Sbjct: 323 DGQAVGLAL-FRGAQAAWLDLSGLDEAAENVLAQFLADAAAPKIFHDAKATMHLLA-DRG 380 Query: 86 IDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 + + T + A L + ++ + Sbjct: 381 LKLAGIH-DDTLISAYLIQPDRRSHDLVDVVQYHL----------------KYAVPVHQA 423 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTIND 196 + + + + + L +L + E L + + Sbjct: 424 KKGELDLGLTADLAEPALAQAQAIHDLSAFLATKLAEKHADKLAAEMELPLIPVLFEMER 483 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G +D+D + +L+ ++ + D + + L++ LF + Sbjct: 484 AGVAVDVDRLNELRAHFTEQVDQATNDAFAAIGHEV-NLSSPKQLQVVLFEELDLPRTKK 542 Query: 257 SEG---TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + T L+ L+ R A ++ L +A DGR+ T Sbjct: 543 IKTGFTTDAESLADLLVKTGHPFLVALMAYRDAIKLRQT--VDGLLKATHEDGRIHTTYA 600 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A TGR S QN+P +R + Sbjct: 601 QTVA-ATGRLSSLNPNLQNIP------------------------VRSEEGRRIRDVFMV 635 Query: 371 SNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G + L+ D + IE R++A ++ ++ I+A+ NGED++ ++ FN ++V+ E R Sbjct: 636 GEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPEEVTSEMR 695 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + K M L Y + L + F+ + ++ + DQ Sbjct: 696 SKVKAMSYGLAYG-----LSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSVVDQA 750 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + G R + + L + + Sbjct: 751 RKDGYTETIFGR---------RRYLPELNSSDRRLRDIAERAALNAPIQGSAADLV---- 797 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 ++ + + + Sbjct: 798 -----------------KVAMLRIDEELKAGEYKSR------------------------ 816 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + ++L E + V L M + +PL + Sbjct: 817 ---MLLQVHDE---LIL--------EIAEGELEPVQELVTREMGQAAELL--VPLDVQPG 860 Query: 669 EAKRY 673 + + Sbjct: 861 VGRTW 865 >gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321] gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321] Length = 877 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 83/668 (12%), Positives = 182/668 (27%), Gaps = 150/668 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A+++ D+ T++ + + +L + ++ + Sbjct: 333 DLVGFAWSYGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNH 382 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 G+D+ + + +R L + ++ +L + ++ Sbjct: 383 FGVDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDETF 427 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQT 193 + + + F E+ R + E L+ D E+ L + Sbjct: 428 YGKGVKKAIPE-REKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAK 486 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 + G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 487 MEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPL 545 Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 T +L IL+ + + L + + +DG++ Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTR 605 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P +R Sbjct: 606 YVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 640 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426 + L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ Sbjct: 641 VPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTA 700 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L + + + FE + +++ + Sbjct: 701 NDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKTYIDTYFERFPGIKNYMDEVV 755 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + L EL + ++ + Sbjct: 756 REARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI-- 804 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 ++ + T Sbjct: 805 -------------------LKIAMIQLDKALVAGGYQTK--------------------- 824 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 + IVL E P + + L M + +PL A Sbjct: 825 ------MLLQVHDE---IVL--------EVPKSELTEMKKLVKQTMEEAIQ--LSVPLIA 865 Query: 666 EGYEAKRY 673 + E + Sbjct: 866 DENEGATW 873 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 93/514 (18%), Positives = 169/514 (32%), Gaps = 73/514 (14%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 LFID ET I L D+E + + D + L + + Sbjct: 24 YLFIDTETTGD---------------RIRLFQVG-DEERIFVIDLFDLPEAVDVLKELIA 67 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL-NFSE 120 + V V HN F+ + I T + + G SL + L ++ Sbjct: 68 KKGV--VGHNLKFDLKFM---YPLGIVPYATFDTMIGSFLLGYERHSLSHVAERLLGYTM 122 Query: 121 HLTKMEEG-------KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + K I + + A + T + Sbjct: 123 DKSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARV 182 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 F P + E + G +D + + +L ++ +KL I+ Sbjct: 183 FGLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKKLQKL---IMDFYIKYRI 239 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + +L G++L + + T L+ + + +D++ R Sbjct: 240 DPMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHVKEVRDILEIRRIKKAL--D 297 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL L + +GR+ + GA TGR S QN+PR Sbjct: 298 KLKELKGFI-RNGRVYPEFRQIGA-VTGRMSSSNPNVQNIPRD----------------- 338 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +RS AS G V+AD + IE R+ A ++ ++AF G D++ Sbjct: 339 -------------MRSLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHR 385 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKST 469 T + P ++++KE+R + K M L Y A+ A G++L+ + +V Sbjct: 386 YTASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSEYARSSYGVELEIEAADVFRQ 445 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVK--DKLIGT 501 F+ + + H ++ + E L+G Sbjct: 446 KFFKFFHAFKDWHDSVKRELKENKEVVGTTLLGR 479 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 83/667 (12%), Positives = 165/667 (24%), Gaps = 151/667 (22%) Query: 28 AVITL--------CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI- 78 I +AW ++ L + V N ++ Sbjct: 325 FEILGDNYHTEPIIGFAWGNDKQIYASTDTDLLKSDAFQTAL-SKAV-----NI-YDFKR 377 Query: 79 --LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LGID+P+ + L + ++ L Sbjct: 378 SKVLLSHLGIDLPTANFD---------------ARLAKYLLSTVEDNELSTIARLYTDLP 422 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDL 187 + + + + L K+ L L D E L Sbjct: 423 LETDEVVYGKGAKRAVPEKEVLLSHLAKKVKVLQVAKPVMLEKLAEHSQSELLFDMELPL 482 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G ++ + ++ KL ++I ++ + L + LF Sbjct: 483 ANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFE 541 Query: 248 ITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 + T +L IL + + L + + D Sbjct: 542 KMELPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILED 601 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 602 GKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGR 636 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP- 420 +R + S L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 637 LIRKAFVPSTEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEK 696 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+ R K + + Y L + + + FE + ++ Sbjct: 697 PEDVTPNDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRKKAKEYINTYFERYPGIKA 751 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + + + L EL + ++ + Sbjct: 752 YMENVVREAKDKGYVETLFHRRREL---------PDINSRNFNVRNFAERTAINSPIQGS 802 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 ++ ++ T Sbjct: 803 AADI---------------------LKIAMINLDKALVEGGYKTK--------------- 826 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 + IVL V P+ ++ L M A Sbjct: 827 ------------MLLQVHDE---IVLEV--------PNDELVAMKALVKETMEAAVELA- 862 Query: 660 GLPLKAE 666 +PL A+ Sbjct: 863 -VPLIAD 868 >gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] Length = 895 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 91/615 (14%), Positives = 181/615 (29%), Gaps = 140/615 (22%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140 G+++ + T + L+ + + Sbjct: 392 GVEL-PEPLFDTKLAGYLAHPDFHADTLEQAAAHFLDLHIEAQAEAATQGTLDFDEPEEN 450 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 DS + L EY + L+ E + + + G + Sbjct: 451 DSKNGELILTRTAI-VGLLAEYLA--GVLDKREQFGLLKSI--ELPVSQVLHGMEQVGAQ 505 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 +D+ ++++++ +A + + ++ G + + L+ LF G+ ++ Sbjct: 506 VDMTRLVQMRDQLAADAAQ-AQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPTKKTKSG 564 Query: 260 ---TLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRG 307 T + L Q L+++R + I + TL +A + DGR+ Sbjct: 565 SYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI--VQTLIDATNRHDGRIHT 622 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + A TGR S QN+P A +RS Sbjct: 623 TFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPAGREIRSA 657 Query: 368 IIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + G + L+ +D + +E R++A ++G++ I+AF +G+D + + + P+D ++ Sbjct: 658 FVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITS 717 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 +QR+ K M L Y T Sbjct: 718 DQRSHVKAMSYGLAY-----GLSTYGL--------------------------------- 739 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A + K+ E +K + A V + + L Sbjct: 740 ------AQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIF-------- 785 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR + +K + A + +Q + Sbjct: 786 ------------------GRRRYFPGLKSPNRAVRDAAERA---------ALNAPIQGSA 818 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 DI+ M A G ++L +HDE+V E L M + A Sbjct: 819 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAMEHAVTMA- 877 Query: 660 GLPLKAEGYEAKRYR 674 +PL ++ Sbjct: 878 -VPLDVSTGIGSDWQ 891 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 78/630 (12%), Positives = 156/630 (24%), Gaps = 125/630 (19%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN 111 L +L D V HN+ + + G + T++ A +L Sbjct: 383 QALAAWLADPGQPKVLHNAKNALRVLPEQ-GWRLEGISM-DTALAAYLVKPGRRSFALDA 440 Query: 112 AC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L +A ++ + F K Sbjct: 441 LAVEYLGRELAPA--PASDGQLAFGADDRAEADALMAQARAVLDLGDAFTTRLKEVGATE 498 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L D E ++ + G D + +++ A ++ ++ Sbjct: 499 L--------LYDMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAVKEAHAAVGR 550 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASS 285 + L+ LF + ++ + ++L + Sbjct: 551 EF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQA 609 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + L + +++DGR+ T A TGR S QN+P Sbjct: 610 KLRVT-VEGLIKTIAADGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-------------- 653 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G L+ AD + IE RV+A ++ + I+AF + Sbjct: 654 ----------VRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTS 703 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 GED++ T ++ F V E R K M L Y L+++ Sbjct: 704 GEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNIEAGEA 758 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + F + + + ++ + ++G R + + Sbjct: 759 RGLMDTYFLRFGGVRDYLHRVVEEARSTGYTETILGR---------RRYLPDLNSDNRQR 809 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + A Sbjct: 810 REAAERMALNAPIQGTAADIV-----------------------------------KVAM 834 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 ++ R T ++ + EIV E V Sbjct: 835 LKVDRALTE-------------AELTSRMLLQVHD-----------EIVLEIAKGEREQV 870 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M+ PL + + Sbjct: 871 EEILRREMSTAVELRA--PLDVSVGVGRDW 898 >gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] Length = 1003 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 92/704 (13%), Positives = 181/704 (25%), Gaps = 157/704 (22%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLF 75 K + A E + D L +L DE + Sbjct: 407 TKTKIRAAEENPELLGVLL-TSKNTSLWIDTRSIDPELDAALAAWLSDEAARKIV----M 461 Query: 76 ERIL---FKKTLGIDIPSKRWICTSVLARTNGL---------PSSLKNACL-ALNFSEHL 122 + + + G ++ ++ + G +++ L + Sbjct: 462 DLKVQRKLLRAYGYELAG-AVEDPALSSYMCGFIPTATRKLFSERMEDLAERYLWIPKDP 520 Query: 123 TKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 E +A + F ++ P D R + + R + E +L Sbjct: 521 YAQLVFQPEEDEAEPSLFSLPG-EAEPVDNLRYFTQISRIIHEL--ARLLHYEMEEHGQL 577 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI--------VKLTD 229 + E L + + G + L+ +L + + + + Sbjct: 578 KVYEEIELPLLYVLADMEQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTDDG 637 Query: 230 GIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHS----NITQLAKDLI 278 + L+ LF + ++ +L+ + L Sbjct: 638 EEPLNLASVKQLQTVLFDKLALPHTRKIKSGYSTDAESVTELLAKISPESDGAAFLGALA 697 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 R + L +A + DGR+ T Q GA+ TGR S QN+P Sbjct: 698 AYRDNIKLVQT--VEGLQKAAADDGRVHTTFQQ-GAASTGRLSSTAPNLQNIP------- 747 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-------LVVADLAGIEARVLAW 391 +R I + L+ AD + IE R++ Sbjct: 748 -----------------IRTEEGRRIRGAFIVAPAPVDGVEYEGLLTADYSQIEMRIMVH 790 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A ++ I A+ GED++ ++ F ++V+ EQR+ K M L Y Sbjct: 791 LAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYG-----LSRF 845 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L++ T+ F+ + + + Q + + + G R Sbjct: 846 GLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGR---------R 896 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + E ++ Sbjct: 897 RVLPDLDSPNRVRREAAERAALNAPIQGTAADII---------------------KIAMI 935 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 ++ L M L VHDE Sbjct: 936 NIHRRLREEG----------------------------LKTRML----------LQVHDE 957 Query: 632 IVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 I+ E + L M+ S +PL + K ++ Sbjct: 958 IILEVATGEREAAERVLVEEMSGAAS--LRVPLDVQVGWGKSWQ 999 >gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5] Length = 829 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 88/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 + D ET + Y + + + + D L + L Sbjct: 135 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 184 Query: 63 DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114 E V HN F+ +K LG+ +R T + LK+ Sbjct: 185 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 244 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ + L + + + Y +D +AT L Sbjct: 245 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 298 Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +P + L L Q + DRG I +D + + Q + K E Sbjct: 299 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 358 Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270 + + + LR+ LF G+ ++ T L+ Sbjct: 359 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 418 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + ++ +DG +R + + S Q L Sbjct: 419 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 478 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 PR E ++ C++A G +++ DL E A Sbjct: 479 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 511 Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438 ++G+ + F N D + F + R K + Sbjct: 512 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 571 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G ++ Q K+ F + Sbjct: 572 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 603 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + + + + Sbjct: 604 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 637 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I R+ ++ + + + I+Q+ S D L G +A Sbjct: 638 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 688 Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 IV+ VHD +V+ + + Sbjct: 689 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 725 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 93/622 (14%), Positives = 177/622 (28%), Gaps = 163/622 (26%) Query: 70 AHNSL-----FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 HN ++ + +G +++ N Sbjct: 316 GHNLKSAQFFYDIKGIYRLIGERYEEA--YDVFLMSWLNDP------------------- 354 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 DS ++A +++ + ++ + + L E Sbjct: 355 ----------------DSGGITKSKAENIEQFIGNIVVHAQEEKDKLKANGLLEVYLGME 398 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + + + G D D++ K+ + + E ++ E I K G + L+++ Sbjct: 399 LPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKI-KTFVGYDINLNSPKQLQVF 457 Query: 245 LFLITGIDLVDMSE---GTLKSILSHS----NITQLAKDLILNRLASSGSAILKLNTLSE 297 LF G++ + ++ T + L + + IL + L + Sbjct: 458 LFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTYALPLKD 517 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V +DGR+ + + G + TGR S QN+P Sbjct: 518 YVLADGRIHSSFRQTG-TATGRLSSVNPNMQNIP------------------------MK 552 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G +R I G V D + IE R+LA + G++ +A+ N EDI+ T + F Sbjct: 553 GKWGVKLREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIF 612 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 +KV R + K + GL S Sbjct: 613 GVAPEKVDSGMRRLAKAVN--------------FGILYGLSPFGLS-------------- 644 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + + + + A + V + + ++G + Sbjct: 645 ----------------RDTGVSQKEAKKFIEKYFATYPKVKGF---IEKIAKETKEKGYA 685 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + R+ +++ T + R T Sbjct: 686 ETLA-----------------------GRKRFIREIRSKN---RTVAMRGERIAT----- 714 Query: 598 TENIVQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSL 650 +Q + DI+ M YD +VL VHDE+V E D + S+ Sbjct: 715 -NVPMQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSI 773 Query: 651 MTKNPSWAKGLPLKAEGYEAKR 672 M +PL G K Sbjct: 774 MEGVME--LDVPLVVNGAAGKN 793 >gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium] Length = 647 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 96/332 (28%), Gaps = 59/332 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------S 51 + ID ET S + A + + A+D Sbjct: 346 KRFAIDTETTSLD-------YRIA---EMVGFSVAFDANDAYYIPLAHDYEGAPEQLNRD 395 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSS 108 A+ + L D +V + H+ ++ +F+ GI + + T + + Sbjct: 396 AIIQQIKPILEDPSVEKIGHHLKYDAHIFENH-GIHLQGW-YFDTMLASYVLNAVTTRHG 453 Query: 109 LKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + + L+ + GK + + + G Y D Sbjct: 454 MDDVARVYLSHLTTTFEQVAGKGAKQ---------------KTFNQIEIETAGHYAAEDA 498 Query: 168 EATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 T L++ L E + + T+ + G +DL + +L A Sbjct: 499 HVTYRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSVDFANT 558 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQ 272 + L+ I++ G + + LF G+ + T +++L + Sbjct: 559 IQNLENQIIE-IAGESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKIDHP- 616 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 +LI+ + L + + D Sbjct: 617 -ITELIIEYRGLTKLRSTYTEALVKQANPDTH 647 >gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 932 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 88/602 (14%), Positives = 171/602 (28%), Gaps = 123/602 (20%) Query: 90 SKRWICTSVLARTNGLPSSLKNA--CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 K T + A H+ + EG DS + Sbjct: 433 PKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRND 492 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + A D RE F L + E + + + G ++D++ ++ Sbjct: 493 NQLPRHTAIVGLLARKLADSLDQREQFSLLESV---EIPVSRVLYGMEHAGAQVDMNRLM 549 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKS 263 ++E +A + ++ G + + L+ LF G+ ++ T + Sbjct: 550 SMREQLAAD-ANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAA 608 Query: 264 ILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGA 314 L Q L+L+R + I + TL +A + SDGR+ T + A Sbjct: 609 ALQVLRDRSCGNDRACQFLDALLLHREKNKLKQI--VQTLIDATNRSDGRIHTTFEQTVA 666 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P A +RS + G Sbjct: 667 -ATGRLSSVDPNLQNIP------------------------NRDPAGREIRSAFVPGEGF 701 Query: 375 K-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + L+ +D + +E R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K Sbjct: 702 ESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVK 761 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M L Y T L ++ F + + + + E Sbjct: 762 AMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKG 816 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + G R G+ + + + + Sbjct: 817 YTETIYGR---------RRYFPGLKSPNRAVRDAAERAALNAPIQGSAADI--------- 858 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 ++ ++ I+ Sbjct: 859 ------------MKIAMIRADDALREA-----------------------GLASRII--- 880 Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKR 672 DE+V E V L M A +PL Sbjct: 881 -LQIH-----------DELVVEVAPGEAERVTALVKDAMEHAVDMA--VPLDVSTGIGSD 926 Query: 673 YR 674 ++ Sbjct: 927 WQ 928 >gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J] gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J] Length = 881 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 80/616 (12%), Positives = 160/616 (25%), Gaps = 126/616 (20%) Query: 73 SLFE---RILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEE 127 + ++ + L ID+P + + + L + Sbjct: 373 ATYDFKRAKILLSHLNIDVPRGAF-DARLANYLLSNVDDNQLSTIARVHTNIHLESDDVV 431 Query: 128 -GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 GK + F P H+ K + +L D E Sbjct: 432 YGKGVKRAF--------PDKGLLFAHLAKKIKVLVESKATMLDKLSDHDQLALFEDIEMP 483 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + G +++ + ++++ E +L ++I L + L LF Sbjct: 484 LANVLAKMEITGIKVNKETLVEMAEQNKVIIDRLTQEIYDLAGEEF-NINSPKQLGSILF 542 Query: 247 LITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + + T +L IL+ + L L + + Sbjct: 543 EKMQLPIEMTKKTKTGYSTAVDVLERLAPIAPVVAKILDYRQITKLQSTYLIGLQDYIME 602 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DG++ ++TGR S QN+P Sbjct: 603 DGKIHTRYVQ-DLTQTGRLSSIDPNLQNIP------------------------IRMEQG 637 Query: 362 DCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R AS L+ +D + IE RVLA I+G+ I AF DI+ +T + F Sbjct: 638 RLIRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDADIHTSTAMRVFAID 697 Query: 421 IDKV-SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 ++ + R K + + Y L + + + F+ + + Sbjct: 698 KEEDVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGISRQKAKEYINTYFDRYPGIK 752 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSI 538 + + + + + L EL + ++ + Sbjct: 753 DYMDSIVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFAERTAINSPIQG 803 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 SA + + + + + + Sbjct: 804 SAADILKIAMINLDKALEEGRFKT------------------------------------ 827 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 + + IVL E P V L M Sbjct: 828 -------------KMLLQVHDE---IVL--------EVPKDELEKVKQLVKETMEHAVD- 862 Query: 658 AKGLPLKAEGYEAKRY 673 +PL+A+ K + Sbjct: 863 -LSVPLRADENSGKSW 877 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 88/659 (13%), Positives = 162/659 (24%), Gaps = 127/659 (19%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLG 85 A A A D A + +L D V H++ + G Sbjct: 343 DARARALAIATADGHAAWVGVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHALA-AQG 401 Query: 86 IDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 + T++ L + + E + G + Sbjct: 402 WTVRGL-VADTAIATYLVRPDQRAYDLADLSVRYLHRELV---TTGADTGQLAFEEVDT- 456 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 +A + E L+ E L + T+ G +D Sbjct: 457 ----GADVAVQRARAALDLWAVIGAELEASDSMSLLADL--ELPLVDVLMTMESTGIAVD 510 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--- 259 D + L + ++ + + + L++ LF G+ ++ Sbjct: 511 TDHLDTLHAEFTERMLGAAQEAYAVIGREV-NLGSPKQLQVVLFDELGMPRTKRTKTGYT 569 Query: 260 TLKSILSHS---NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T L + L+ +R + + L + V+ DGR+ T A Sbjct: 570 TDADALQGLFAKTQHPFLEHLLAHRDVTRLRQT--VEGLQKTVAPDGRIHTTYAQTIA-A 626 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P + +R G Sbjct: 627 TGRLSSADPNLQNIP------------------------IRTESGRRIREAFCVGPGFET 662 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ + I+AF GED + AK F+ + RA K M Sbjct: 663 LLTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAM 722 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y + L + V F+ + + + D+ + Sbjct: 723 NYGLAYG-----LSSYGLGQQLGISPGDAQVLMDDYFQTFGGVRDYLHGVVDEARQTGFT 777 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 ++G R + + E + Sbjct: 778 ATILGR---------RRYLPDLQSDNRQRREMAERMA----------------------- 805 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 L + A + R G + Sbjct: 806 ------------LNAPIQGSAADLIKVAMLGVDRALADAGL-------GS------RMLL 840 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL E ++ L M +PL + + Sbjct: 841 QVHDE---LVL--------EVAPGERDALEALVREQMAAAAD--LSVPLDVSVGVGRTW 886 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 72/481 (14%), Positives = 143/481 (29%), Gaps = 68/481 (14%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107 +L D V H++ +F + G+ + T++ A Sbjct: 488 DEDDERAFADWLGDPERPKVMHDAKGLMRVFGEH-GMTVAGVAM-DTALGAYLVKPGRRT 545 Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +L L + +S A+ + + Sbjct: 546 FALDALSLEYLGRE----------------LVPAQESDGQLAFGADDETQARTLMVEART 589 Query: 166 DVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 ++ L RL + +D E L + G D + + +++ A ++ Sbjct: 590 ILDLGTALGARLPEVGAEGLLTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQ 649 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI---TQL 273 + + L+ LF + ++ T L+ +L Sbjct: 650 AVREAHAAVGHEF-NLGSPKQLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHEL 708 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ +R + + + L ++++ DGR+ T A TGR S QN+P Sbjct: 709 PVLMLRHREQAKLRST--VEGLIKSIAPDGRIHTTFNQTVA-ATGRLSSTDPNLQNIP-- 763 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392 +R + G + L+ AD + IE RV+A + Sbjct: 764 ----------------------VRTDEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHL 801 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + ++ I AF +GED++ T FN V E R K M L Y Sbjct: 802 SEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYG-----LSAFG 856 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L ++ + FE + + + ++ ++G L Sbjct: 857 LSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDN 916 Query: 513 K 513 + Sbjct: 917 R 917 >gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99] gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99] Length = 897 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 185/664 (27%), Gaps = 142/664 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERI 78 + I A+ D+ E + + Q L+ + + H+ Sbjct: 355 KDKKILALAFLLQDQ-GYFLPLEEALFSPFSLEFLQNAFSQMLQHACI--IGHDLKPLLS 411 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFC 136 K + + + R T +LA L + I F Sbjct: 412 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EDLIPHEKIKDF- 464 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + A + EY ++ L D E + + Sbjct: 465 -KTKSKAEKSELLSMELNALKRLCEYFEKGGLEE----DLLTLARDIETPFVKVLMGMEF 519 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G++ID +L++ E L+ I+ L + L L+ G+ + Sbjct: 520 QGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYDKLGLP-KNK 577 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S T + L + LIL + L D ++ T G + Sbjct: 578 SHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 636 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R IAS Sbjct: 637 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 672 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K + Sbjct: 673 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 729 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ + + Sbjct: 730 NF--------------GLVYGMGS------------------------------KKLSET 745 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + +A+ + + + E + + RV + + Sbjct: 746 LSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFDFTGVNDYVKG 805 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + I Q + D+L GM Sbjct: 806 NYLREG------------------------------------VNAIFQGSASDLLKLGML 829 Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 830 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFI 888 Query: 670 AKRY 673 AKR+ Sbjct: 889 AKRW 892 >gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35] gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35] Length = 855 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 88/697 (12%), Positives = 176/697 (25%), Gaps = 159/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 + D ET + Y + + + + D L + L Sbjct: 161 VAFDSETSAL----------YCRDGYLLGVSMSHQEYQGVYIDSDCLTEVAVYYLQKILD 210 Query: 63 DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114 E V HN F+ +K LG+ +R T + LK+ Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ + L + + + Y +D +AT L Sbjct: 271 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATLRLH 324 Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +P + L L Q + DRG I +D + + Q + K E Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 384 Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270 + + + LR+ LF G+ ++ T L+ + Sbjct: 385 LYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELST 444 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + ++ +DG +R + + S Q L Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 PR E ++ C++A G +++ DL E A Sbjct: 505 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 537 Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438 ++G+ + F N D + F + R K + Sbjct: 538 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 597 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G ++ Q K+ F + Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + + + + Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 663 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I R+ ++ + + + I+Q+ S D L G +A Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 714 Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 IV+ VHD +V+ + + Sbjct: 715 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] Length = 893 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 90/661 (13%), Positives = 181/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 354 KVLALAFLFEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L I F + Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDGVLKEYLKEELIP------HEKIKDF--KT 462 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + A + EY ++ L + E + + +G+ Sbjct: 463 KSKVEKLEQLDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 518 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I+ L + L L+ + + S Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NKSRS 576 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 577 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 635 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 636 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 671 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K + Sbjct: 672 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINF- 727 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 728 -------------GLVYGMGS------------------------------KKLSETLNI 744 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + Sbjct: 745 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGANDHIKGNYL 804 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 805 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 828 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 829 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFVAKR 887 Query: 673 Y 673 + Sbjct: 888 W 888 >gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5] Length = 825 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 88/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 + D ET + Y + + + + D L + L Sbjct: 131 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 180 Query: 63 DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114 E V HN F+ +K LG+ +R T + LK+ Sbjct: 181 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 240 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ + L + + + Y +D +AT L Sbjct: 241 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 294 Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +P + L L Q + DRG I +D + + Q + K E Sbjct: 295 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 354 Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270 + + + LR+ LF G+ ++ T L+ Sbjct: 355 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 414 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + ++ +DG +R + + S Q L Sbjct: 415 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 474 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 PR E ++ C++A G +++ DL E A Sbjct: 475 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 507 Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438 ++G+ + F N D + F + R K + Sbjct: 508 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 567 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G ++ Q K+ F + Sbjct: 568 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 599 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + + + + Sbjct: 600 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 633 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I R+ ++ + + + I+Q+ S D L G +A Sbjct: 634 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 684 Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 IV+ VHD +V+ + + Sbjct: 685 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 721 >gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica] Length = 921 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 88/630 (13%), Positives = 161/630 (25%), Gaps = 147/630 (23%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 + L D+++ + ++ L K ++ S Sbjct: 369 NNDWFSDIIFNLLADKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGLS 425 Query: 109 ---------------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---- 149 L F + + S Sbjct: 426 QKNLFEEALKEDNRPLSKLAYREEFKGDTERSTAAYKSVREDASTGSTSKLPLEVEFGKR 485 Query: 150 -----ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + Y + +E RL D + + + G ++D + Sbjct: 486 PIVINESARIVANFISLYKQNILELKDNKAFRLYSDID--LPICFILDKMEKVGIKVDAN 543 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEG 259 + +L E KL+E+I L+ + L LF + S Sbjct: 544 YLKQLSTEFGAEILKLEEEIFALSGTKF-NIGSLKQLGEILFEKMQLPFGKASAKASSYS 602 Query: 260 TLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T IL + DL+L + ++L + + + T ++ TG Sbjct: 603 TGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTG 662 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + +R IA G KL+ Sbjct: 663 RLSSQEPNLQNVP------------------------IRSSEGNKIRQAFIAEEGYKLIS 698 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+L+ IA D +AF N +DI+ T + FN +++ E R K + Sbjct: 699 ADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAKAIN-- 756 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ A + + Sbjct: 757 ------------FGIIYGIS------------------------------AFGLAKQLNV 774 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 K + A+++GV + + + Sbjct: 775 TNGEASEYIKKYFAEYKGVQEYMEQTKAFA--------------------------SSNG 808 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 ++ R+ + R +Q + DI+ M N Sbjct: 809 YVTNFFGRKCFVPLIHDKK-----LKQFAERAAINAP------IQGTNADIIKIAMINLD 857 Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYF 642 K +VL +HDE++ E P Sbjct: 858 QEIEKRKLKTRLVLQIHDELLFEAPIDEVE 887 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 88/659 (13%), Positives = 175/659 (26%), Gaps = 141/659 (21%) Query: 34 AYAWDDEPVKLWD----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGI 86 A+AW + + L + + + ++ + LGI Sbjct: 339 AFAWGNSDYIYVSKDSALLTGPSFTKRLAEPI-----------ATYDFKRSKVLLSHLGI 387 Query: 87 DIPSKRWICTSVLARTNGL--PSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSP 143 D+P + + + L N + ++ GK + F Sbjct: 388 DLPQANY-DARLANYLLSNIEDNELATIARLHTNLNMEADEVVYGKGVKRAF-------- 438 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 P D +H+ K + + K D E L + + G ++ Sbjct: 439 PEDEALFDHLARKIQVLVDSKAVILDKLAVNKEEDLYFDIELPLANVLAKMEIAGITVNK 498 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSE 258 + ++ E + L E+I ++ + L LF + Sbjct: 499 TALQEMAEQNKAVIESLTEEIYEMAGEEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGY 557 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ S + L + + SDG++ ++TG Sbjct: 558 STAVDVLERLAPIAPIVAKILDYRQISKLQSTYVIGLQDYIMSDGKIHTRYIQ-DLTQTG 616 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +R + S L+ Sbjct: 617 RLSSSDPNLQNIP------------------------VRLEQGRLIRKAFLPSSEDAVLL 652 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAIGKVME 436 +D + IE RVLA I+G++ I AF DI+ +T + F ++ + R K + Sbjct: 653 SSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMRVFGIEKEEDVTPNDRRNAKAVN 712 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L + + + FE + + + + + + Sbjct: 713 FGIVYG-----ISDFGLSNNLGITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVE 767 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHK 555 L EL + ++ + SA + + + + + Sbjct: 768 TLFNRRREL---------PDINSRNFNIRSFAERTAINSPIQGSAADILKIAMINLDKAL 818 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + + + Sbjct: 819 SEGQFK-------------------------------------------------AKMLL 829 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL V P+ ++ L M A +PL A+ K + Sbjct: 830 QVHDE---IVLEV--------PNDELEAIKALVKKTMEGAVDLA--VPLLADENTGKTW 875 >gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum] Length = 831 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 145/495 (29%), Gaps = 123/495 (24%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E + + + G + L +L+ ++ I ++ L+ +I + + Sbjct: 433 EIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREAGQTFSIL-SPKQVGE 491 Query: 244 YLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L+ G+ + T + L LIL+ L + E Sbjct: 492 VLYGRLGLPPPRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPMEE 551 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 SDGRL G A TGR S QN+P Sbjct: 552 GRGSDGRLHGQFNQTVA-ATGRLSSSRPNLQNIP------------------------AR 586 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 VR C +A G L+ AD + IE R+LA +G+ + +AF+ GEDI+ T A F Sbjct: 587 TELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALLF 646 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + V+ E R K + G+ Sbjct: 647 G---EPVTSESRRRAKTINF--------------GILYGMS------------------- 670 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + + + + + + GV ++ + E Sbjct: 671 -----------AYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPYFEKIREEARRTG----- 714 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 I R +++ D + ++ Sbjct: 715 ---------------------RIRTLLGRIRPIPEIRSDNRNVREYGERM---------A 744 Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 +++Q + D++ + M + ++ ++L VHDE++ E + S+ + Sbjct: 745 VNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKT 804 Query: 651 MTKNPSWAKGLPLKA 665 M +PL Sbjct: 805 MEGAIP--LSVPLPV 817 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 77/497 (15%), Positives = 143/497 (28%), Gaps = 110/497 (22%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + RG +++L+ + ++ +++ I +L + L Sbjct: 437 EVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKF-NLNSPKQL 495 Query: 242 RMYLFLITGIDLVDMS---EGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSE 297 LF G+ V + T L+ + IL+ S + L + Sbjct: 496 SKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSFVKALLK 555 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + GR+ G G + TGR S QNLP Sbjct: 556 RIDETGRVHGNFIQTG-TATGRLSSAEPNLQNLP------------------------VS 590 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 S VR + A G LV AD + +E R+LA ++ + I+AF GEDI+ T F Sbjct: 591 DPLSLRVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTETAKHLF 650 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 +T +++ +R + K + + Y L + F+ + + Sbjct: 651 HT--RQITDRERRVAKTVNFGIIYGMSPH-----GLAERLSIPLQEAKDYIERYFQKFPK 703 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + + + G L + + Sbjct: 704 VREFIEETVREAYKKGFVETAFGRRRPL---------PELKEKSFHKRSFGERAAVNTVI 754 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 ++ +++ + LN+ Sbjct: 755 QGTAADI---------------------MKMAMVNLQPEAEKLNSY-------------- 779 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656 I+L VHDE+V E P+ V + +M + Sbjct: 780 --------------------------IILQVHDELVLEAPEGAEEEVAAKVKQVMEGAAN 813 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL E K + Sbjct: 814 --LSVPLTVEVKSGKEW 828 >gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] Length = 640 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 105/717 (14%), Positives = 195/717 (27%), Gaps = 155/717 (21%) Query: 4 LFIDIETRS-PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS--------AMP 54 D ET + A +A IT +++ + +S A+ Sbjct: 22 FAFDFETSPRDKWRNDKSAALDAHKADITGISFSVSEGTAIYVPLKHRSGRNAENQAAIW 81 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L + V+ VAHN FE + GI + K T ++ +LK+ Sbjct: 82 DYLKLLFESKDVIKVAHNLAFESMFL-YARGIVLQ-KPCYDTIAASQL-----TLKS--- 131 Query: 115 ALNFSEHLTKMEEGKALIARFCK----GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + K L CK + Q + Y D + T Sbjct: 132 --KWEFRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVR-YACADSDYT 188 Query: 171 RELFKRLIPLSDG------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 L+ D E + + G +D +LK Q A++ Sbjct: 189 LRLYHVFNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIV 248 Query: 219 KLDEDIVKLT-DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT------------LKSIL 265 + ++I + + I ++ T A + YLF+ G+ ++ + + Sbjct: 249 SIRKEIAGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEWCA 308 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324 ++ +L+ ++ + D GR+ L G + TGR++ Sbjct: 309 TNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLG-TETGRFASRN 367 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN P+++ VR IIA GK L+ D + I Sbjct: 368 PNMQNCPQKDNDPIG------------------------VRKFIIAPAGKVLLSLDFSQI 403 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-------KVSKEQRAIGKVMEL 437 E RV A+ + ++ + G DI+ T + + P + KE+R I K Sbjct: 404 ELRVGAFYCRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNF 463 Query: 438 ALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y + G++ + + ++ + + Sbjct: 464 GVFYGLFPTGLQRTLKFKAGINPTLAECETIIQNLKSGYPGLAKWQDEVKKRAAVSCYSE 523 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 +G L+ G+ Sbjct: 524 TWLGRRRYLL---------GIRSSDWGKKSFAERCALNTPIQGTAADI------------ 562 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + L R + ++ M Sbjct: 563 ---LKLACGRIIS-----------GLPERLWLKP-----------------------MLQ 585 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 HDE+V E P+ V + M P A +P+ AE + Sbjct: 586 I-----------HDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAEASVGRN 631 >gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5] gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 88/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 + D ET + Y + + + + D L + L Sbjct: 161 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210 Query: 63 DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114 E V HN F+ +K LG+ +R T + LK+ Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ + L + + + Y +D +AT L Sbjct: 271 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 324 Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +P + L L Q + DRG I +D + + Q + K E Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 384 Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270 + + + LR+ LF G+ ++ T L+ Sbjct: 385 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 444 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + ++ +DG +R + + S Q L Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 PR E ++ C++A G +++ DL E A Sbjct: 505 PRDE---------------------------SIIKGCVVAPPGYRVIAWDLTTAEVYYAA 537 Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438 ++G+ + F N D + F + R K + Sbjct: 538 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 597 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G ++ Q K+ F + Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + + + + Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 663 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I R+ ++ + + + I+Q+ S D L G +A Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 714 Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 IV+ VHD +V+ + + Sbjct: 715 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 89/697 (12%), Positives = 175/697 (25%), Gaps = 159/697 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 + D ET + Y + + + + D L + L Sbjct: 161 VAFDSETSAL----------YCRDGYLLGVSISHQEYQGVYIDSDCLTEVAVYYLQKILD 210 Query: 63 DETVMCVAHNSLFERILFKKTLGIDI----PSKRWICTSVLARTNGL---PSSLKNAC-L 114 E V HN F+ +K LG+ +R T + LK+ Sbjct: 211 SENHTIVFHNLKFDMHFYKYHLGLTFDKAHKERRLHDTMLQHYVLDERRGTHGLKSLAMK 270 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ + L + + + Y +D +AT L Sbjct: 271 YTDMGDYDFE------LDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYAAKDTDATIRLH 324 Query: 175 KRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +P + L L Q + DRG I +D + + Q + K E Sbjct: 325 NFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQLTHNLNKAREK 384 Query: 224 IV--------KLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSILSHSNI 270 + + + LR+ LF G+ ++ T L+ Sbjct: 385 LYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADSTDAEALNELAT 444 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +L + + + ++ +DG +R + + S Q L Sbjct: 445 QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTSGRLSSSGKLNLQQL 504 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 PR E ++ C+IA G +++ DL E A Sbjct: 505 PRDE---------------------------SIIKGCVIAPPGYRVIAWDLTTAEVYYAA 537 Query: 391 WIAGEDWKIKAFAN-------GEDIYVTTYAKAFNTPIDKVS-----KEQRAIGKVMELA 438 ++G+ + F N D + F + R K + Sbjct: 538 VLSGDRNMQQVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFG 597 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G ++ Q K+ F + Sbjct: 598 ILYGSGPAKV-----AHSVNEALLEQAAKTGEPF-----------------------VEC 629 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + + + + + + Sbjct: 630 TVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHG-------------------------- 663 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I R+ ++ + + + I+Q+ S D L G +A Sbjct: 664 FIYSHFGRKRRLHNIHSEDRGVQGEEIRSG---------FNAIIQSASSDSLLLGAVDAD 714 Query: 619 KN--------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 IV+ VHD +V+ + + Sbjct: 715 NEIISLGLEQEMKIVMLVHDSVVAIVREDLIDQYNEI 751 >gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201] gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201] Length = 960 Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 92/658 (13%), Positives = 173/658 (26%), Gaps = 142/658 (21%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL- 105 + + Q+L D T V + GI + + Sbjct: 409 VAADQELTRAVEQWLGDTTAAKVVDGLK-DLYHGLIQRGIVLAGV-VDDVQLSGYLVRPA 466 Query: 106 --PSSLKN-ACLALNFSEHLTKMEEG----KALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L++ L + G A + Sbjct: 467 LRSYELESQLAQHLEVEVPAAEESTGGADAHGQTALALEDEDALGGVSDAVLVREATLGR 526 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + A E +L L++ E L ++ + G +D + L E + Sbjct: 527 ACRELSEHLRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHPID 586 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILS----H 267 + E D + + T L+ +F G+ + ++ Sbjct: 587 QAFEQAQAQIDHEV-NLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVSPD 645 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + ++ L+ R S I + L +A++ DGR+ T Q A TGR S Sbjct: 646 TAGSRFLVALMNWREYSKLKQI--VAGLRDAIAEDGRIHTTYQQTVA-ATGRLSSTGPNL 702 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-----KKLVVADLA 382 QN+P +R + + L+ AD + Sbjct: 703 QNIP------------------------VRTEQGQRIRDVFVVGEDTQGPFECLMTADYS 738 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++G++ I+AF GED++ ++ F+ + V+ + R+ K M L Y Sbjct: 739 QIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGLVYG 798 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + L + Sbjct: 799 -----LSSYGLSQQLHIGV---------------------------------------DE 814 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + + GV + + E Sbjct: 815 ARTMMSGYFERFGGVRDFLRGVVEEARSKGYTETI------------------------- 849 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR D+ D A R +Q + DI+ + M + Sbjct: 850 -DGRRRYLPDLTSDN---RQARQAAERMA------LNAPIQGSAADIIKKAMIGVDRALR 899 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E V + M +PL + + Sbjct: 900 DGQLRSRVLLQVHDELIVEVAPGEREEVERILRTEMAGAAE--LTVPLDVNVGTGRTW 955 >gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334] gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334] Length = 889 Score = 224 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 83/668 (12%), Positives = 180/668 (26%), Gaps = 148/668 (22%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKK 82 A + A++ D+ T++ + + +L + ++ + Sbjct: 344 ADLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLH 393 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 G+D+ + + +R L + ++ +L + ++ Sbjct: 394 RFGLDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDET 438 Query: 143 PPYDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQT 193 + + + VE L ++L D E+ L + Sbjct: 439 FYGKGVKKALPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAK 498 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 + G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 499 MEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPL 557 Query: 253 ----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 T +L IL+ + + L + + +DG++ Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTR 617 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P +R Sbjct: 618 YVQ-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAF 652 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426 + L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ Sbjct: 653 VPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTA 712 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + + Y L + + + FE + +++ + Sbjct: 713 NDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKSYIDTYFERFPGIKNYMDEVV 767 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + L EL + ++ + Sbjct: 768 REARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI-- 816 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 ++ + T Sbjct: 817 -------------------LKIAMIQLDKALVAGGYQTK--------------------- 836 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 + IVL E P + + L M + +PL A Sbjct: 837 ------MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIA 877 Query: 666 EGYEAKRY 673 + E + Sbjct: 878 DENEGATW 885 >gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908] Length = 889 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 85/615 (13%), Positives = 167/615 (27%), Gaps = 134/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK-NACLALNFSEHLTKM 125 + H+ K + + + R T +LA L + Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEALKEYLK------ED 448 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + + F + T D E Sbjct: 449 LVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDIET 500 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID + L++ E L+ I+ L + L L Sbjct: 501 PFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVL 559 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + G+ + S T + L + LIL + L D ++ Sbjct: 560 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKI 618 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + ++AF G DI++ T F + + Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 710 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + + +A+ + + + E + + RV Sbjct: 732 -----KKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 786 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + I Q Sbjct: 787 DFNGVNDYVKGNYLREG------------------------------------VNAIFQG 810 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 811 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + A R+ Sbjct: 870 LRVPLETSAFVANRW 884 >gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27] gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27] Length = 905 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 93/664 (14%), Positives = 184/664 (27%), Gaps = 142/664 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERI 78 + I A+ ++D+ E + + Q L+ + + H+ Sbjct: 363 KDKKILALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHACI--IGHDLKPLLS 419 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFC 136 K + + + R T +LA L + I F Sbjct: 420 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EDLIPHEKIKDF- 472 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + A + EY ++ L D E + + Sbjct: 473 -KTKSKVEKLELLSVELNALKRLCEYFEKGGLEE----DLLTLARDIETPFMKVLMGMEF 527 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G++ID L++ E L+ I+ L + L L+ G+ + Sbjct: 528 QGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDF-NLNSPKQLSEVLYEKLGLP-KNK 585 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S T + L + LIL + L D ++ T G + Sbjct: 586 SHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 644 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R IAS Sbjct: 645 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 680 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R+LA + + ++AF G DI++ T F ++KE+R+I K + Sbjct: 681 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSI 737 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ + + Sbjct: 738 NFG--------------LVYGMGS------------------------------KKLSET 753 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + +A+ + + + E + + RV + + Sbjct: 754 LNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDYIKG 813 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + I Q + D+L GM Sbjct: 814 NYLREG------------------------------------VNAIFQGSASDLLKLGML 837 Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 838 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPKLQREIQRILNDEV-YPLRVPLETSAFV 896 Query: 670 AKRY 673 A R+ Sbjct: 897 ANRW 900 >gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017] Length = 889 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 85/615 (13%), Positives = 167/615 (27%), Gaps = 134/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK-NACLALNFSEHLTKM 125 + H+ K + + + R T +LA L + Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEALKEYLK------ED 448 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + + F + T D E Sbjct: 449 LVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDIET 500 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID + L++ E L+ I+ L + L L Sbjct: 501 PFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVL 559 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + G+ + S T + L + LIL + L D ++ Sbjct: 560 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKI 618 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + ++AF G DI++ T F + + Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 710 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + + +A+ + + + E + + RV Sbjct: 732 -----KKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 786 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + I Q Sbjct: 787 DFNGVNDYVKGNYLREG------------------------------------VNAIFQG 810 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 811 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + A R+ Sbjct: 870 LRVPLETSAFVANRW 884 >gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018] Length = 889 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 85/615 (13%), Positives = 167/615 (27%), Gaps = 134/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK-NACLALNFSEHLTKM 125 + H+ K + + + R T +LA L + Sbjct: 395 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEALKEYLK------ED 448 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + + F + T D E Sbjct: 449 LVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGGLEEGLLTLA--------RDIET 500 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID + L++ E L+ I+ L + L L Sbjct: 501 PFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVL 559 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + G+ + S T + L + LIL + L D ++ Sbjct: 560 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKI 618 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + ++AF G DI++ T F + + Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDL 710 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + + +A+ + + + E + + RV Sbjct: 732 -----KKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 786 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + I Q Sbjct: 787 DFNGVNDYVKGNYLREG------------------------------------VNAIFQG 810 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 811 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + A R+ Sbjct: 870 LRVPLETSAFVANRW 884 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 76/686 (11%), Positives = 171/686 (24%), Gaps = 150/686 (21%) Query: 11 RSPQPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQYLRDETVM 67 S + + V I A+ + + ++ + Sbjct: 318 FSDEDIFYFEVLRDNYHREDIIGFAW----GHGEQIYASTDLSLLSTDLFKKVFEKP--- 370 Query: 68 CVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 + + ++ + LGI++ + + L + + Sbjct: 371 -I---ATYDFKRSKVLLSHLGIELVAPSYD---------------ARLANYLLSNVEDNE 411 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFK 175 + L + DS + + L G ++ Sbjct: 412 LTTIARLFTDISLEADDSIYGKGVKRAVPEKEVLLGHLARKVKVLLDSRAPMVEKLADHD 471 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 ++ + E L + + G +++ + + E + L ++I + + Sbjct: 472 QIDLYHEIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF-NI 530 Query: 236 RQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF + T +L IL+ + Sbjct: 531 NSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQST 590 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + +DG++ ++TGR S QN+P Sbjct: 591 YVIGLQDYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------- 630 Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R L+ +D + IE RVLA I+G++ I AF G DI+ Sbjct: 631 -----IRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIH 685 Query: 410 VTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 +T + F V+ R K + + Y L + + Sbjct: 686 TSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKSYI 740 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + FE + +++ + + + + L EL + ++ Sbjct: 741 DTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFA 791 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + ++ ++ Sbjct: 792 ERTAINSPIQGSAADI---------------------LKIAMINLDNALQAGGFK----- 825 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 + + IVL E P+ ++ L Sbjct: 826 ----------------------AKMLLQVHDE---IVL--------EVPNDELTAIKKLV 852 Query: 649 S-LMTKNPSWAKGLPLKAEGYEAKRY 673 M A +PL+A+ + + Sbjct: 853 KDTMEAAVDLA--VPLRADENAGQSW 876 >gi|308172795|ref|YP_003919500.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus amyloliquefaciens DSM 7] gi|307605659|emb|CBI42030.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus amyloliquefaciens DSM 7] Length = 761 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 109/699 (15%), Positives = 187/699 (26%), Gaps = 142/699 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQS-------AMP 54 + +D ET GV Y + VI + + + Sbjct: 139 IIAVDTETT--------GVDVYTD--VIVGLSLTLPNADWHVYIPVEHVDCEQLSRAYVL 188 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS------ 108 L DE++ V HN++F+ + ++ G D+ W T S Sbjct: 189 EGLAPVFNDESIGKVLHNAIFDIAMLRRH-GFDLKGVAW-DTMTAMHLLNENESDRALGG 246 Query: 109 -----LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 LK+ L G+ + Y F Y Sbjct: 247 AGSFKLKDLAPKYLKTPADTFDALFGRNA-QFKEVPLDIALVYAAKDTELTWKLYEFQRY 305 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + ++ + E L + + GY +DLD + E + + ++L + Sbjct: 306 HMAKIPTILDYYQTV------EIPLLYVIVDLEANGYILDLDFAKEYGEKLHKRAEELRK 359 Query: 223 DIVK-----LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 ++V + T+ +R L G DL +M L Sbjct: 360 ELVAELTPFHEGDEPINLNSTHQMRPALSKAIGKDLSNMDAK---KTLKPLKDDYEIIAK 416 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 +L + ++TL + + + TGR+S Sbjct: 417 LLEYKNIVKLSGTYIDTLPTKQNPTTERWHSRFNPMGTVTGRFSS--------------- 461 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + + R GK LV AD E R +A+++GE Sbjct: 462 ------GKDEEDKTQQGFNVQNQPPEARPMFGPPPGKLLVGADFKAQEIRCVAYLSGEPV 515 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKE-------QRAIGKVMELALGYQGGAKVFKT 450 I AF D Y T + + P ++V K +R KV LA Y Sbjct: 516 LINAFLEERDPYATMASNFYKRPHEEVYKNADGSDTKERKKMKVAWLATLYGMSDYSLAD 575 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD-KLIGTACELVKKA 509 M L + + F + + ++ + L L Sbjct: 576 M-----LGVGKKEATEFKEELFGSMPKLSAWLKENEEFVRKNGYVWADLNARKRRLPDAK 630 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 K+ + Sbjct: 631 LPRKNIPYGKWNDP---------------------------------------------K 645 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDI 624 Y D + S +N A Q T VQ S M A K G+ + Sbjct: 646 YDDARKHNSRINRALRQ----------ATNARVQGSSSIQTKVTMIKAHEYCANKPGWAL 695 Query: 625 VLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLP 662 TVHDE++ E P+ + + +M + W +P Sbjct: 696 WSTVHDELIFEVPEDFTWEEAQEIRDIMLNSYRWGDVVP 734 >gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 880 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 78/686 (11%), Positives = 174/686 (25%), Gaps = 150/686 (21%) Query: 11 RSPQPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQYLRDETVM 67 S + + V I A+ + + ++ + Sbjct: 318 FSDEDIFYFEVLRDNYHREDIIGFAW----GHGEQIYASTDLSLLSTDLFKKVFEKP--- 370 Query: 68 CVAHNSLFERI---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 + + ++ + LG+D+ + + L + + Sbjct: 371 -I---ATYDFKRSKVLLSHLGLDLVAPSYD---------------ARLANYLLSNVEDNE 411 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA---------TRELFK 175 + L + DS + + L G ++ Sbjct: 412 LTTIARLFTDISLEADDSIYGKGVKRAVPEKELLLGHLARKVKVLLDSRAPMVEKLADHD 471 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 ++ + E L + + G +++ + + E + L ++I + + Sbjct: 472 QIALYHEIELPLANILAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEF-NI 530 Query: 236 RQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF + T +L IL+ + Sbjct: 531 NSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQST 590 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + +DG++ ++TGR S QN+P Sbjct: 591 YVIGLQDYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------- 630 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R S L+ +D + IE R+LA I+G++ I AF G DI+ Sbjct: 631 -----VRLEQGRLIRKAFTPSQEDAVLLSSDYSQIELRLLAHISGDEHLIAAFNEGADIH 685 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 +T + F + V+ R K + + Y L + + Sbjct: 686 TSTAMRVFGIEKAEDVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKSYI 740 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + FE + +++ + + + + L EL + ++ Sbjct: 741 DTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFA 791 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + ++ ++ Sbjct: 792 ERTAINSPIQGSAADI---------------------LKIAMINLDNALQAGGFK----- 825 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 + + IVL E P+T +V L Sbjct: 826 ----------------------AKMLLQVHDE---IVL--------EVPNTELAAVKKLV 852 Query: 649 -SLMTKNPSWAKGLPLKAEGYEAKRY 673 M A +PL+A+ + + Sbjct: 853 KETMEVAVDLA--VPLRADENAGQSW 876 >gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75] Length = 893 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 89/634 (14%), Positives = 177/634 (27%), Gaps = 144/634 (22%) Query: 58 LQYLRDE------TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110 L++L + V + H+ K + + + R T +LA Sbjct: 381 LEFLENAFSQMLQHVQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 440 Query: 111 N-ACLALN---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L K + K+ + + + + A + EY ++ Sbjct: 441 EVLKEYLKEEWIPHEKIKDFKIKSKVEKLEQ-----------LDMELNALKRLCEYFEKG 489 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E + + +G++ID +L++ E L+ I++ Sbjct: 490 GLEE----NLLSLAKEVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILE 545 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L L+ + + S T + L + LIL + Sbjct: 546 LIGVDF-NLNSPKQLGEILYEKLKLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNK 603 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L D ++ T G + TGR S QN+P Sbjct: 604 LFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP--------------- 647 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IAS L+ D + IE R+LA + + ++AF G Sbjct: 648 ---------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKG 698 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 DI++ T F ++KE+R+I K + G+ Sbjct: 699 RDIHLETSKALFGGD---LAKEKRSIAKSINFG--------------LVYGMGS------ 735 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + +A+ + + + Sbjct: 736 ------------------------KKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMK 771 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E + + RV + + Sbjct: 772 EEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREG------------------------ 807 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTP 640 I Q + D+L GM ++ ++L VHDE++ E + Sbjct: 808 ------------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKN 855 Query: 641 YFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + ++ + +PL+ + AKR+ Sbjct: 856 ALELQQEIQRILNDEV-YPLRVPLETSAFVAKRW 888 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 79/656 (12%), Positives = 167/656 (25%), Gaps = 133/656 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 383 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 433 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 434 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 485 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 486 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 545 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 546 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 604 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 605 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 663 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +R S L+ + Sbjct: 664 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSQEDAVLLSS 699 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + Sbjct: 700 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKAVNFG 759 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 760 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 814 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 EL + ++ + Sbjct: 815 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADI-------------- 851 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 ++ ++ + + Sbjct: 852 -------LKIAMINLDNALQAGGFK---------------------------AKMLLQVH 877 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL+A+ + + Sbjct: 878 DE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLRADENAGQSW 920 >gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] Length = 910 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 90/661 (13%), Positives = 185/661 (27%), Gaps = 145/661 (21%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD------------LLQYLRDETVMCVAHNSLFERILF 80 ++ D + D T ++ + +++ L D ++ + +N I Sbjct: 367 ITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFL 426 Query: 81 KKTLGIDIPSKR-WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 L +I S ++ + L+ +E + + + Sbjct: 427 LNFLRTEITSASCIDDIMLMHYILSAGKN------DLSLNEIIQTY------NKSYSEQY 474 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 ++ +LF K L + + + + + I + G Sbjct: 475 SENKVCWLKNTFDNLMSELFKN-------------KLLHCYYEIDLPICYILRNIENNGI 521 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----V 254 +I++ L+ +L + + + L++ I K+ + L LF + + Sbjct: 522 KINVPLLKELSAQLKHKIELLEQQIYKICGQEF-NIASPKQLGEILFDVLKLPHAKVSQK 580 Query: 255 DMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 S T +L + + + DL+L + ++TL ++++ T Sbjct: 581 TKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQT 640 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 ++ T R S QN+P VRS +A G Sbjct: 641 STTTSRLSSHSPNLQNIP------------------------IRSEYGLKVRSAFVAPQG 676 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 K++ AD + IE R+L++ A + F GEDI+ +T A+ F D+V++E R K Sbjct: 677 SKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKAK 736 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + + Y L++ F+++ + + E Sbjct: 737 AINFGVIYG-----ISAFGVAKQLNISNTEAAQYINHYFQEYPSIRQYMDETKKFAVENG 791 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 +IG C + + S Sbjct: 792 YVKNMIGRRCYI---------PLINSSNLTTRNFAQRAAINAPIQSTA------------ 830 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 I + +L+YS + Sbjct: 831 -SDIAKIAMIQYEKLIYSKYPA----------------------------------IKL- 854 Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672 + +V E P+ + L M P PLK E Sbjct: 855 LLQVHDE-----------LVFELPNELVDTACNLIKCTMENIP--YFSFPLKVELKIGDN 901 Query: 673 Y 673 + Sbjct: 902 W 902 >gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois] gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois] Length = 816 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 86/626 (13%), Positives = 172/626 (27%), Gaps = 173/626 (27%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNG-LPSSLKNA 112 + L D+++ + H + I P ++ + V+A L + L+ Sbjct: 333 VQDLLTDQSIKKIFH-----------SDNIPHPDPANESFEDLKVIAYPLNTLNTDLEYL 381 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEATR 171 A H + +L+ E Sbjct: 382 FSHYLGETSP--------------------------EAFHKRLNELYDKLRNAMFTEKVL 415 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L+ ++ L + + + G +D++ +L L I+ + ++++ I G Sbjct: 416 TLYYKVDK------PLINVIKHMEKNGISLDVEQLLSLSTQISGKLEEIENKIFDTA-GK 468 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLILNRLASSG 286 S + L LF I + + + + S S+ D +L+ Sbjct: 469 TFSLQSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGYEIADYLLSWRHYIK 528 Query: 287 SAILKLNTLSEAVSSDGRLR--GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L V+ + T + TGR S QN+PR+ Sbjct: 529 LKTAYIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNIPRE----------- 577 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R A G + AD + IE R+LA+IA + A A+ Sbjct: 578 -----------------KNIRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALAS 620 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ T ++ F T DK++ R K + + Y L Sbjct: 621 GTDLHTLTASQIFKT--DKITPNLRNKAKAVNFGIVYG-----ITNFGLSKQLA------ 667 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + ++ + + Sbjct: 668 ---------------------------------ISKEEAASYIQKYFDEYPEIKSYMNHI 694 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 ++ R+ ++ D + + Sbjct: 695 RNQAKKDTYVKTIMN--------------------------RKCPIQNINSDNRAI---S 725 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---YDIVLTVHDEIVSETPDTPY 641 R +Q + DI+ M + +V+ VHDE+V E Sbjct: 726 LIAERSAINAP------IQGTAADIIRAAMVRMAQEKELLSHMVMQVHDELVFELETDAI 779 Query: 642 FS-VGTLCSLMTKNPSWAKGLPLKAE 666 + +M + G+PL E Sbjct: 780 QQLAKKIKQIMEEP----HGIPLLVE 801 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 101/648 (15%), Positives = 180/648 (27%), Gaps = 136/648 (20%) Query: 37 WDDEPVKLWDRTEQSAM----PSDLLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPS 90 + + M ++L L+ + VA + F + I Sbjct: 378 VREGNIFFIGVDGDELMCKVTAAELAAGLQSAKTIVVA-----DVKSFLRADDAWGQIQL 432 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 RW S+ A + + G+ L + D+ Sbjct: 433 FRWFDLSLAAYLLNPEE------RNYAWDRLRAMLFAGEELPDAVDEVHPDAQGMAALAL 486 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 HV ++ + D E T L E L + + G IDLD Sbjct: 487 MHVLGPRI--KSAGLD-ELTANL----------EIPLIPVLADMEKAGITIDLDAFADFL 533 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL----VDMSEGTLKSILS 266 + + +L I + + R + + LF G+ + T S+L Sbjct: 534 TEVNERINELTRVIHERAGEPF-NIRSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLE 592 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL L L + V+++GR+ A+ TGR S Sbjct: 593 KLSGQHEIITDILEYRKMEKLRSTYLEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPN 651 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P G +R+C A G +L AD + +E Sbjct: 652 LQNIP------------------------IRGDQGKRMRACFTAGEGLRLAAADYSQVEL 687 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA +G+ + AF + EDI+ T A F+ V+ ++R K + L Y G + Sbjct: 688 RVLAHFSGDPALVSAFEHDEDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQ 747 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L ++ FE + + + + +Q E L G Sbjct: 748 KL-----SRELGIKINEAKEFIAKYFEKLDVLKEFYDSVVEQGREKGYVTTLSGR----- 797 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 R + + + A++ ++ M + + I R Sbjct: 798 ----RRLLPELHSTSPQILSQARRQAINTVIQGSA--ADIIKMAMIKVADNAEIKHLGGR 851 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + Sbjct: 852 LI----------------------------------------------LQIHD------- 858 Query: 627 TVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E++ E P+ +G L M + A +PLK + + + Sbjct: 859 ----ELLVEGPEENIEEIGKLLQKDMQTVATLA--VPLKVDLGLGRNW 900 >gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] Length = 889 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 178/661 (26%), Gaps = 144/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + L+ L+ V V H+ K Sbjct: 352 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFLKMLQ--HVQIVGHDLKPLLSFLK 408 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L I F + Sbjct: 409 AKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTKA 462 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + + F + + + E + + +G+ Sbjct: 463 EKLELLSVELNALKRLCEYFEKGGLEEGLLALA--------KEIETPFMKVLMGMEFQGF 514 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I+ L + L L+ + + S Sbjct: 515 KIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEVLYEKLELP-KNKSHS 572 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 573 TDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 631 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 632 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 667 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F ++KE+R+I K + Sbjct: 668 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSINFG 724 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 725 --------------LVYGMGS------------------------------KKLSETLNI 740 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + + Sbjct: 741 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFNGVNDYIKGNYL 800 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 801 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 824 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + A R Sbjct: 825 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFVANR 883 Query: 673 Y 673 + Sbjct: 884 W 884 >gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500] Length = 1359 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 91/659 (13%), Positives = 179/659 (27%), Gaps = 122/659 (18%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG------LPS 107 + +++ L D+ + V+ N+ L + R I + A + Sbjct: 767 LAFMVRLLEDDNIKKVSFNAKESIKPMLW-LNQWMQPSRLIDPKIAAWVHNTEAEEMKGF 825 Query: 108 SLKNACLALNFSEHLTKME---EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L L ++ K K L + + D + + Sbjct: 826 ELTFLYHHLVENKDYEKQINLPMIKELQSLDSNKDLVIINNDNNFSMFPNDLR--NSSLV 883 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD-ED 223 L L E + + + G + + + L + Sbjct: 884 MIALEQLLLQLNLQAPFYQEMRVVPILSKMELHGITFSPETFRTCSSNLQTYVQNLQGKW 943 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + +S ++ +L I + + + TL ++ Q KD++ R Sbjct: 944 NTEFKKDSAKSLSSPVQIKEFLLTQYKITVSNTGKQTLVDLIKKYPDVQYIKDILEYRHC 1003 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQ----ERSEE 338 + + + V + Q+ + + TGR S QNLPR ++E Sbjct: 1004 NKIL-TTYVQPYLDIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALNVNYNDE 1062 Query: 339 ILTQTIQALNRGETIADPLGLASDCV----RSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + N E D +G + + R A G L+ D + IE R++ + Sbjct: 1063 DGDSELADFNIDEDEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSK 1122 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + F N D++ P+DKV+ +R K + + Y G Sbjct: 1123 DQKLEEYFKNEVDVFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSLS----- 1177 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 K+ + K Sbjct: 1178 ---------------------------------------QILKVSKERASQFINDFLNKF 1198 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 Q + + E + + I + RR + V Sbjct: 1199 QSIRNY---IEEEKKKIRLKK-----------------------FIKTIAGRRRLLPHVN 1232 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---------------K 619 N + L + +I+Q + DI+ E M N Sbjct: 1233 SQDP--NQSHRALRQT-------VNSIIQGSASDIIKEAMFNIHVYLSQLSKEYKSLDPH 1283 Query: 620 NGYDIVLTVHDEIVSETP-----DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 N ++L +HDE++ E P D + +M +P+ + K + Sbjct: 1284 NDPRLLLQIHDELIYEIPDAMLNDKESEVCINIKRIMESVYQDDLTVPIAVTMSKGKSW 1342 >gi|162135103|ref|YP_001595844.1| hypothetical protein [Pseudomonas phage YuA] gi|161513950|emb|CAO77776.1| hypothetical protein [Pseudomonas phage YuA] Length = 664 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 193/716 (26%), Gaps = 138/716 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTE--QSAMP-SDL 57 ++ ID ETR L K+G A + IT ++A +D P +P + Sbjct: 31 KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89 Query: 58 LQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLART---NGLPSSL 109 L YLR + + V N ++ GI+ R+ + S+ Sbjct: 90 LAYLRAQAKVFTGDLVGANLPYDLDFLAG-DGIEFERVRYFRDIQIADPLICELHDSYSM 148 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + F + + D + + + G+Y + D Sbjct: 149 QAIAERWGF----------YGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRL 198 Query: 170 TRELFKR---------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + +R L + + E L + + RG RID D + ++ ++ + Sbjct: 199 PLNILRRQEREIDEQDLWGVYNLESKLLPILTRLRRRGVRIDCDRLDMIERWALEKETEA 258 Query: 221 DEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAK 275 + + + + + L GI L S K +L + Sbjct: 259 LAQVRSITGHRIAVGDVWKPEVIAPAL-EHIGIKLNKTSQGKPSIDKELLGSIDHP--VA 315 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------YGASRTGRWSGCV 324 L+ + +++ + + +GRL GT + GR S Sbjct: 316 GLLERARKVNKLRTTFASSVRDHMV-NGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEH 374 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 Q P + RS + G+ D + Sbjct: 375 PNLQQQP------------------------ARDEFAMMWRSIYLPEEGQHWASNDYSQQ 410 Query: 385 EARVLAWIAG-EDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 E R+ A I A D Y + + ++ +R K + L Sbjct: 411 EPRMAVHYACLAKDLIGHKAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLG 470 Query: 439 LGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 L Y G + + + ++ + ++ E + Sbjct: 471 LSYGMGGAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEA---------- 520 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 G + + + K + +L K V Sbjct: 521 -AGPEGQALLDTFDQKVPFIKKLAKACEARAKAVGY------------------------ 555 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 I S RR + K + K ++Q S D M Sbjct: 556 --ITTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVAC 600 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + G DI++ VHDEI D +M LP K + + + Sbjct: 601 AEAGLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSW 652 >gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] Length = 836 Score = 223 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 84/499 (16%), Positives = 143/499 (28%), Gaps = 121/499 (24%) Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + G +D++ + L+E + + L+E I G + + + Sbjct: 440 HPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEEGIA-REAGAQVNLQSPKQVAWL 498 Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 LF G+ V ++ L+ + +IL S +N E Sbjct: 499 LFERLGLPPVKRTKTGLSTDVGVLEELSRLPEPLGRVPSMILEHREISKLITAFVNPFLE 558 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 S G +R T G + TGR S QNLP+ Sbjct: 559 Q-GSSGVIRSTFDQTG-TGTGRLSSRDPNVQNLPQF------------------------ 592 Query: 358 GLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 G + R C++ G V AD + IE RVLA ++GE+ I+AF G D++ T + Sbjct: 593 GHWAVEFRRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWI 652 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + VS EQ + Sbjct: 653 YGVDPQAVSPEQ--------------------------------------------RRFA 668 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + L A + + + V + + + GV + + + E Sbjct: 669 KVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSALPGVREFTRRMVEQAKARGYAAT 728 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + + + R Sbjct: 729 LMGRVRPLSEVS-----------------------------TVEGRGAGAIDRVAI---- 755 Query: 597 LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLM 651 +Q + DI + M + +VL VHD IV P+ V L +M Sbjct: 756 --NTPIQGSAADIARKAMVELHRALAGGDCRMVLQVHDSIVCSVPEGMASRVAELMREVM 813 Query: 652 TKNPSWAKGLPLKAEGYEA 670 S +PL E Sbjct: 814 EGAAS--LSVPLVVEVKTG 830 >gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7] Length = 833 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 87/614 (14%), Positives = 172/614 (28%), Gaps = 130/614 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKME 126 + H+ K + + + R T +LA L + Sbjct: 337 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEY-----LQEDL 391 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 I F + + A + EY ++ L E Sbjct: 392 ILHEKIKDFKTKNKAEQLERLNLE--LNALKRLCEYFEKGGLEE----NLLSLARGIEMP 445 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 + + +G++ID +L++ E K L+ I+ L + L L+ Sbjct: 446 FMKVLINMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQLGEVLY 504 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 + + S T + L + LIL + + L D ++ Sbjct: 505 EKLNLP-KNKSHSTDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLKDKDDKIH 563 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T G + TGR S QN+P +R Sbjct: 564 TTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSSKGLLIRK 598 Query: 367 CIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 I+S L+ D + IE R+LA + + ++AF G DI++ T F + ++ Sbjct: 599 GFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLA 655 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 KE+R+I K + G+ Sbjct: 656 KEKRSIAKSINF--------------GLVYGMGS-------------------------- 675 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + + + + + +A+ + + + E + + RV + Sbjct: 676 ----KKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLGRYRVFD 731 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + + I Q Sbjct: 732 FNGVNDYVKGNYLREG------------------------------------VNAIFQGS 755 Query: 606 SRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAK 659 + D+L GM ++ ++L VHDE++ E + + + ++ +A Sbjct: 756 ASDLLKLGMLKVSERFKNDSSVRLLLQVHDELIFEIEEKNALKLQQEIQGILNHEV-YAL 814 Query: 660 GLPLKAEGYEAKRY 673 +PL+ + AKR+ Sbjct: 815 RVPLETSAFIAKRW 828 >gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24] Length = 905 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 90/631 (14%), Positives = 179/631 (28%), Gaps = 138/631 (21%) Query: 58 LQYLRD--ETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110 L++L + ++ + H+ K + + + R T +LA Sbjct: 393 LEFLENAFSQILQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 452 Query: 111 N-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + I F + + A + E+ ++ Sbjct: 453 EVLKEYLK------EDLIPHEKIKDF--KTKSKAEKSEQLNMELNALKRLCEHFEKGGLE 504 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 LI D E + + +G++ID +L++ E L+ I+ L Sbjct: 505 E----DLLILARDIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIG 560 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L L+ G+ + S T + L + LIL + Sbjct: 561 VDF-NLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFN 618 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L D ++ T G + TGR S QN+P Sbjct: 619 TYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP------------------ 659 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R IAS L+ D + IE R+LA + + ++AF G DI Sbjct: 660 ------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDI 713 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ T F ++++KE+R+I K + G+ Sbjct: 714 HLETSKALFG---EELAKEKRSIAKSINF--------------GLVYGMGS--------- 747 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + +A+ + + + E Sbjct: 748 ---------------------KKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMREEI 786 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + + RV + + + Sbjct: 787 LKTSKAFTLLGRYRVFDFNGVNDYIKGNYLREG--------------------------- 819 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFS 643 I Q + D+L GM ++ ++L VHDE++ E + Sbjct: 820 ---------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPE 870 Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + ++ + +PL+ + AKR+ Sbjct: 871 LQQEIQRILNDEV-YPLRVPLETSAFIAKRW 900 >gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12] gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12] Length = 903 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 84/615 (13%), Positives = 165/615 (26%), Gaps = 134/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125 V H+ K + + + R T +LA L Sbjct: 409 IVGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLREYLKEELIP--- 465 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + + F + + + E Sbjct: 466 ---HEKIKDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALA--------REIET 514 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID +L++ E L+ I+ L + L L Sbjct: 515 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNILECQILDLIGVDF-NLNSPKQLGEIL 573 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + G+ + S T + L + LIL + L D ++ Sbjct: 574 YEKLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 632 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 633 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 667 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + ++AF G DI++ T F + Sbjct: 668 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---L 724 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 725 AKEKRSIAKSINFG--------------LVYGMGS------------------------- 745 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + + +A+ + + + E + + RV Sbjct: 746 -----KKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 800 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + I Q Sbjct: 801 DFNGVNDYIKGNYLREG------------------------------------VNAIFQG 824 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 825 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 883 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + A R+ Sbjct: 884 LRVPLETSAFVANRW 898 >gi|118197653|ref|YP_874046.1| DNA polymerase [Thermus phage phiYS40] gi|116266344|gb|ABJ91427.1| DNA polymerase [Thermus phage phiYS40] Length = 703 Score = 223 bits (568), Expect = 9e-56, Method: Composition-based stats. Identities = 106/727 (14%), Positives = 213/727 (29%), Gaps = 137/727 (18%) Query: 2 SKLFIDIETRSPQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + IDIET K G + Y I L A+D + L+ E++ + L+ Sbjct: 10 KIVGIDIETW---DGKKGGSLDPY--SGKIALVQIAYDRNNIVLYRPWEKNF--EEALKV 62 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--------LKNA 112 L D+ V+ V HN F+ F +I + T + ++ L+ Sbjct: 63 LSDKDVLKVGHNLKFDLKFF---YMNNIYPEPIFDTMIASQMIYAGLDEPDEISEVLEAL 119 Query: 113 CLALNFSEHLTKMEEGKA--LIARFCKGSIDSPPYD---------CTRANHVQAWQLFGE 161 L E GK +F + + + E Sbjct: 120 KDDLTTEEVAIFDVFGKKRTKATKFSHSLQAVLKRELNIFLPKDVQNSNWGGELSEAQKE 179 Query: 162 YCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLK---- 208 Y DV+ ++L L E + + G +ID + K Sbjct: 180 YAINDVKYLKDLSIELWKKIKALNIENVFMLEMKFLPVLVMLELTGVKIDKEGWKKKMEK 239 Query: 209 ----------------LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 ++ ++++ +K+ + + + + + G+ Sbjct: 240 ENQELLELEKELKKEIYEKFVSKQSEKMMVGLFEDAEYEKINLNSPLQMAKIF----GLP 295 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 V L+ I + + E ++ + RL Sbjct: 296 NVSK--------LTLEKIEDPTIKKYVEYKKKAKLVTTYSKEYLEKLTENNRLMSDYSQT 347 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P + I A Sbjct: 348 K-TATGRISSSNPNLQNVP------------------------------SWFKRYITAEE 376 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAI 431 G V AD + +E R+LA+++G++ I + N +D++ K + P D+ E R Sbjct: 377 GYVPVFADYSQVELRILAYLSGDEAMIDSC-NSKDMHSENARKIYKIPPDQPVPPELRKK 435 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + A+ Y A G+ F + + + + Sbjct: 436 AKTVSFAIPYGSSAYGLV----VRGMFSSLAEAEEAIEGFFNSFPKVKEFLEKSAKSA-Q 490 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + +G ++ + + +G ++ + + ++ Sbjct: 491 NGITRDALGRV---------RNYKKI--YISEDEKGALKILMFRLPSGISKDEFIKEVLE 539 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 + +D ++ D + ++ + + + +QA S I Sbjct: 540 KNSFKDAA-------KIFGMDEQMLQLAISAYEKTKKLAKI-AREGQNHPIQATSASITK 591 Query: 612 EGMKNATK----NGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKN-PSWAKGL--P 662 M + + GY + LTVHD I E ++ + +M + P G+ P Sbjct: 592 TAMVDLLEYLSMTGYGYMTLTVHDSIFFEIKKEFIFDALPKIKEIMEQAGPKVVPGIITP 651 Query: 663 LKAEGYE 669 + E E Sbjct: 652 VDVEVGE 658 >gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri] Length = 869 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 84/658 (12%), Positives = 181/658 (27%), Gaps = 134/658 (20%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + V +D Q+L D + +++ + + I + Sbjct: 329 EIIGFGI-VNSKGVFYFDYIHAKH-DKLWHQFLNDNKYQKLTYHAKSLIVALAR-DNIFV 385 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARFCKGSIDSPP 144 + + + + + +N E + GK + + I Sbjct: 386 QNIEY-DMMLAGYVYNSNAK-NSLDTYINLFEKKQILTDEFFYGKGVKKQIPADVIKLGH 443 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + +A+++ + +L+ + E + + G ++D Sbjct: 444 FIGEKASYIHKLRP-KIIELLKTNQQYDLYHNI------ELPIAFALARMEINGVKVDQY 496 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + I + ++L+ +I + I + + LF + T + Sbjct: 497 ELTTQTLRIEKIVQELNNEINDIAQKEI-NPNSPKQISELLFQNFSLPDRKKG-STAQET 554 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + IL+ L + + + +DG++ + + TGR S Sbjct: 555 LEEIKNNHVIIPKILDYRKYQKLYSTYLKGMEKYIFADGKVHTIYKQT-LTNTGRLSSVE 613 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAG 383 QN+ VR + +S L+ D + Sbjct: 614 PNMQNI------------------------SIRDHIQKEVRKIFVVSSPDNILLSCDYSQ 649 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++ + I AF N EDI+ T K FN D+++ R K + Sbjct: 650 IELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSAKAVNF------ 703 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ A + Sbjct: 704 --------GIIYGISDF------------------------------GLATDLNISVAKA 725 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + + + E + +R Sbjct: 726 KAIINNYYQQFPTIKAFIDKQVEFCKQNGYVTTIFNRKR--------------------- 764 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNAT---- 618 Y D +Y+ +R +G ++ N +Q + DI+ +KN Sbjct: 765 ------YVSEINDRNYM---------QREFGKRIAMNMPIQGSAADIIKIALKNIDQEFL 809 Query: 619 --KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 I+ +HDE++ E P V + + M + + L + + Sbjct: 810 KLNLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTK--LDVKLIVDMKTGLSW 865 >gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 894 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 92/676 (13%), Positives = 169/676 (25%), Gaps = 132/676 (19%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67 IET+S +G+ + A E A + ++L + Sbjct: 336 IETQSAASPHGLGLTVETQDGKPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-P 393 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTK 124 V ++ + ++ G+ + + V SL + Sbjct: 394 KVMSDAKVQVKAMRRA-GLRVQGLAF-DVLVAGWLLRPGFTDKSLAALVSRYLMEDLPEP 451 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 + P V+AW L + D E Sbjct: 452 D-------------ANQLVPETEALTAPVEAWYTLRVEHALREVLDER---TLGVMVDIE 495 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L+ + RG D + +L + + L E I + L+ Sbjct: 496 MPTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEIGKEI-NLGSPKQLQEV 554 Query: 245 LFLITGIDLV---DMSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF G+ T L+ DL+L +S + TL + Sbjct: 555 LFDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLR-QIIQTLERGI 613 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 D R+ T + TGR S QN+P Sbjct: 614 GDDERIHTTYV-QTGTTTGRISSNDPNLQNIP------------------------VRTE 648 Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +RS I G L+ AD + IE R++A ++G+ I+AF GED++ + F Sbjct: 649 EGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFG 708 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 VS R K M L Y L + T F + Sbjct: 709 VEPADVSPAMRTKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGAV 763 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + ++ + + G + + L + Sbjct: 764 RDYLRQVVEEARAAGYTETIFGRRRP---------FPDLNSPNRVLRDNAERAALNAPIQ 814 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + ++ ++ D Sbjct: 815 GSAADI---------------------MKIAMIRIEADMRE------------------- 834 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSW 657 RD+ + HDE++ E + ++ + M Sbjct: 835 --------RDMASRMLLQV-----------HDELILEVAPGEWDALQAIVTDRMAHAAD- 874 Query: 658 AKGLPLKAEGYEAKRY 673 +PL+ + + Sbjct: 875 -LRVPLEVQVGRGDSW 889 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 77/656 (11%), Positives = 162/656 (24%), Gaps = 133/656 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYVSTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 V-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGTKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 EL + ++ + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADI-------------- 807 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 ++ ++ + Sbjct: 808 -------LKIAMINLDKALQAGGFRAKC---------------------------LLQVH 833 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 834 DE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] Length = 842 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 74/516 (14%), Positives = 157/516 (30%), Gaps = 63/516 (12%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD-ETVMCVAHNSLFERILFKKTLGIDIPSK 91 + D + ++ + + + + +N + L + + Sbjct: 365 FGFVICDGERNIVLLNHENTDYGSINKVYEKLKEKSVIGYNIK-------EYLKKGMGYR 417 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 ++ + G SS + G L + P Sbjct: 418 QYFDIMLAWYVLGTESSQD-------LENIIFSEL-GVNLEKFEEQFKKRKPEEISEEEK 469 Query: 152 HVQAWQLFGEYCKRDVEATRELFKR-LIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209 W+ + L L + + E L + ++ G +I+ + Sbjct: 470 TQFLWERAFYVKELKEILENRLKSEDLTNVFENLENKLVPVLASMEMYGIKINKEYFENY 529 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 ++ + + +KL+ +I G + L LF GI+ V ++ T +L Sbjct: 530 KKELQENIEKLEGEIY-SLLGEAFNIGSPKQLAEILFDKMGIEPVKKTKTGYSTDVEVLE 588 Query: 267 HSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + +L + + L + R+ T G + TGR S Sbjct: 589 ELALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEKDRIHTTFNQNG-TSTGRLSSTNP 647 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R I+ G LV D + IE Sbjct: 648 NIQNIP------------------------VRTDEGIKIRKGFISEEGWSLVSFDYSQIE 683 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGG 444 RVLA ++ ++ + A+ +D++ T K F ++V++E+R+I KV+ ++ Y Sbjct: 684 LRVLAELSKDENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKT 743 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 L + ++ + FE + + + + + + L GT Sbjct: 744 P-----FGLSKELKIPVADASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGT--- 795 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 R +G+ K+L + Sbjct: 796 ------RRYIKGINSSNKNLQAQANRMAVNTVVQGT 825 >gi|149408291|ref|YP_001294570.1| hypothetical protein ORF062 [Pseudomonas phage M6] Length = 664 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 104/716 (14%), Positives = 194/716 (27%), Gaps = 138/716 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTE--QSAMP-SDL 57 ++ ID ETR L K+G A + IT ++A +D P +P + Sbjct: 31 KRVAIDCETR-DPDLRKLGPGAGRRPNSYITGISFAIEDGPGGYLPIRHEGGGNLPLEGV 89 Query: 58 LQYLRDETVM----CVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLART---NGLPSSL 109 L YLR + + V N ++ GI+ R+ + S+ Sbjct: 90 LAYLRAQAKVFTGDLVGANLPYDLDFLAG-DGIEFERVRYFRDIQIADPLICELHDSYSM 148 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + F + + D + + + G+Y + D Sbjct: 149 QAIAERWGF----------HGKDEALLRAAAVDYGIDPKKDMWMLPAKFVGKYAEEDTRL 198 Query: 170 TRELFKR---------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + +R L + + E L + + RG RID D + ++ ++ + Sbjct: 199 PLNILRRQEREIDEQDLWGVYNLESKLLPILTGLRRRGVRIDCDRLDMIERWALEKETEA 258 Query: 221 DEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAK 275 + + + + + L GI L S K +L + Sbjct: 259 LAQVRSITGHRIAVGDVWKPEVIAPAL-EHIGIKLNKTSQGKPNIDKELLGSIDHP--VA 315 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-----------YGASRTGRWSGCV 324 DL+ + +++ + + +GRL GT + GR S Sbjct: 316 DLLERARKVNKLRTTFASSVRDHMV-NGRLHGTFNQLRRQKDDESDGTAGAAYGRLSSEH 374 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 Q P + R+ + G+ D + Sbjct: 375 PNLQQQP------------------------ARDEFAMMWRAIYLPEEGQHWASNDYSQQ 410 Query: 385 EARVLAWIAG-EDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 E R+ A I A D Y + + ++ +R K + L Sbjct: 411 EPRMAVHYACLAKDLIGHQAWLSAIEARDKYRNDPNTDNHQMMADMAGIKRKDAKEIYLG 470 Query: 439 LGYQGGAKVF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 L Y G + + + ++ + ++ E + Sbjct: 471 LSYGMGGAKMCRKLGLPTMMAVRGPRFQLFDVNSPEGQRLVAEGARRFEA---------- 520 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 G + + + K + +L K V Sbjct: 521 -AGPEGQALLDTFDHKVPFIKKLAKACEARAKAVGY------------------------ 555 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 I S RR + K + K ++Q S D M Sbjct: 556 --ITTLSGRRCRFPKDKDGN-------------YDWTHKGLNRLIQGSSADQTKMAMVAC 600 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + G DI++ VHDEI D +M LP K + + + Sbjct: 601 AEAGLDIIIQVHDEIAFSVHD--MKEAAEAAHIMRTCTP--LELPSKVDVEIGQSW 652 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 85/617 (13%), Positives = 165/617 (26%), Gaps = 141/617 (22%) Query: 82 KTLGIDIPSKRWICTSVLARTNGLP----SSLKNACLALNFSEHLTKMEEGKALIARFCK 137 + G + + + A ++ L G A Sbjct: 433 RAQGWTL-GEECFDVMLAAYLVAPDQRSYAAADLVGRVLGL------DVGGGAPDDALFD 485 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + A + EA LSD E + + Sbjct: 486 LAAEGEGPGVAGARLGRLCAALHPLRAELGEA-LRGSGEAGLLSDVEMPTAAVLAGMERV 544 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--- 254 G +D + L + + + ++ E + + + + L+ LF G+ Sbjct: 545 GIGVDSARLGALSDELGGDVERAREGALAVLGREV-NLSSPKQLQEVLFEHFGLPRTRRT 603 Query: 255 DMSEGTLKSILSHS---------NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 T L + + L+ +R +++L +V+ DGR+ Sbjct: 604 KTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLKQ--MVDSLIASVADDGRI 661 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T A+ TGR + QN+P +R Sbjct: 662 HTTFSQ-VAAATGRLASADPNLQNIP------------------------ARSADGMRIR 696 Query: 366 SCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +A G + L+ AD + IE R++A ++ ++ I AF +GED++ T + F TP+ +V Sbjct: 697 GGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPVAEV 756 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + +QR+ K L Y L Sbjct: 757 TAQQRSRIKATSYGLAYG-----LSKYGLSKQL--------------------------- 784 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + +++ + + GV + L + Sbjct: 785 ------------GIPVPEAAALRERYFERFGGVRDYLESLVDQARSRGYTETMYH----- 827 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 RR D+ D + +Q Sbjct: 828 ---------------------RRRYLPDLGSDNRQRREMAERA---------ALNAPIQG 857 Query: 605 ISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657 + DI+ M + G +++ +HDE++ E V M S Sbjct: 858 SAADIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEVAPGERERVEEAVRQEMAGVAS- 916 Query: 658 AKGLPLKAEGYEAKRYR 674 +PL ++ Sbjct: 917 -LRVPLDVSVGVGPSWQ 932 >gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8] gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8] Length = 893 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 91/631 (14%), Positives = 179/631 (28%), Gaps = 138/631 (21%) Query: 58 LQYLRD--ETVM----CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLK 110 L++L + ++ + H+ K + + + R T +LA Sbjct: 381 LEFLENAFSQILQHACIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD 440 Query: 111 N-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + I F S + + A + EY ++ Sbjct: 441 EVLKEYLK------EDLIPHEKIKDFKTKSKAEKL--ELLSVELNALKRLCEYFEKGGLE 492 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L E + + +G++ID+ +L++ E K L+ I+ L Sbjct: 493 E----GLLALARGVETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIG 548 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L L+ G+ + S T + L + LIL + Sbjct: 549 VDF-NLNSPKQLGEVLYEKLGLP-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFN 606 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L D ++ T G + TGR S QN+P Sbjct: 607 TYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP------------------ 647 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R IAS L+ D + IE R+LA + + ++AF G DI Sbjct: 648 ------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDI 701 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ T F + ++KE+R+I K + G+ Sbjct: 702 HLETSKALFG---EDLAKEKRSIAKSINF--------------GLVYGMGS--------- 735 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + + + + +A+ + + + E Sbjct: 736 ---------------------KKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEI 774 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + + RV + + + Sbjct: 775 LKTSKAFTLLGRYRVFDFNGVNDYVKGNYLREG--------------------------- 807 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFS 643 I Q + D+L GM ++ ++L VHDE++ E + Sbjct: 808 ---------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPE 858 Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + ++ + +PL+ + AKR+ Sbjct: 859 LQQEIQRILNDEV-YPLRVPLETSAFIAKRW 888 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 77/655 (11%), Positives = 165/655 (25%), Gaps = 131/655 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 +AW Q + + + ++ + LGI++ Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKP----I---ATYDFKRSKVLLSHLGIEL- 390 Query: 90 SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + L + + KG+ + P Sbjct: 391 VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPDKD 443 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ K + ++L + E L + + G +++ + Sbjct: 444 VLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQ 503 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLK 262 + E + L ++I + + L LF + T Sbjct: 504 DMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAV 562 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL+ + + L + + +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R L+ +D Sbjct: 622 VDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSSDY 657 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALG 440 + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + + Sbjct: 658 SQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIV 717 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y L + + + FE + +++ + + + + L Sbjct: 718 YG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFK 772 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVH 559 EL + ++ + SA + + + + + + Sbjct: 773 RRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + + Sbjct: 824 FR-------------------------------------------------AKMLLQVHD 834 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 835 E---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu Length = 864 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 84/647 (12%), Positives = 169/647 (26%), Gaps = 145/647 (22%) Query: 65 TVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119 V N+ F R + + G ++ V A + Sbjct: 312 KCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSD-----------T 360 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLI 178 + K L + + Y + T +L +L Sbjct: 361 APSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLK 415 Query: 179 PL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + + +D + + + L+ K+L+++ G Sbjct: 416 AYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGEQ 474 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILNR 281 LR LF + L+ + T +++L+ LIL Sbjct: 475 FLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEY 534 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ L + G + T G + TGR S Q + + Sbjct: 535 RQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 592 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 TI+ R+ ++S G + AD + IE R+LA ++G+ +K Sbjct: 593 NFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 643 Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F E + T ++ + PI++V+ R K + ++ Y G + Sbjct: 644 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC-------- 695 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + K++ + Sbjct: 696 ------------------------------------LGVTVLEATHFLERFLQKYKKIKD 719 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + RR + Sbjct: 720 FAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ- 752 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEI 632 +Q R+ +VQ + D+ M + +V +HDE+ Sbjct: 753 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 804 Query: 633 VSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673 + E DT L +M + +PLK + + Sbjct: 805 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 851 >gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus] gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus] Length = 866 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 84/647 (12%), Positives = 169/647 (26%), Gaps = 145/647 (22%) Query: 65 TVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119 V N+ F R + + G ++ V A + Sbjct: 314 KCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSD-----------T 362 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLI 178 + K L + + Y + T +L +L Sbjct: 363 APSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLK 417 Query: 179 PL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + + +D + + + L+ K+L+++ G Sbjct: 418 AYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGEQ 476 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILNR 281 LR LF + L+ + T +++L+ LIL Sbjct: 477 FLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEY 536 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ L + G + T G + TGR S Q + + Sbjct: 537 RQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 TI+ R+ ++S G + AD + IE R+LA ++G+ +K Sbjct: 595 NFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 645 Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F E + T ++ + PI++V+ R K + ++ Y G + Sbjct: 646 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC-------- 697 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + K++ + Sbjct: 698 ------------------------------------LGVTVLEATHFLERFLQKYKKIKD 721 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + RR + Sbjct: 722 FAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ- 754 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEI 632 +Q R+ +VQ + D+ M + +V +HDE+ Sbjct: 755 --QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDEL 806 Query: 633 VSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673 + E DT L +M + +PLK + + Sbjct: 807 LFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 92/632 (14%), Positives = 175/632 (27%), Gaps = 153/632 (24%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-CLA 115 +L L ++++ + ++ L K ++ T KN Sbjct: 377 ILNLLTNKSIKKITYSLK---HLLKFYANQSHKITAIEDLELMQYTLSAGLVQKNLFAET 433 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L ++ E K +I +A F Y + D Sbjct: 434 L--TKDNIINESAKIVINFISLYKQTLLALQKNKA--------FRLYREID--------- 474 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + + G ++D + + +L + E K++E+I L+ + Sbjct: 475 ---------LPTCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTKF-NI 524 Query: 236 RQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHSNIT-QLAKDLILNRLASSGSAI 289 L LF + + S T IL + L+L + Sbjct: 525 ASQKQLSEILFKKMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKN 584 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++L + +++ + T ++ TGR S QN+P Sbjct: 585 TYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIP------------------ 626 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 + +R IA +G KL+ AD + IE R+L+ IA D +AF N EDI+ Sbjct: 627 ------TRSSDGNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIH 680 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T + FN +++ E R K + G+ Sbjct: 681 TQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS----------- 715 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A + + K + A+++G+ + Sbjct: 716 -------------------AFGLAKQLNVSNGTAAEYIKQYFAEYKGMQEYMVQTKAYAN 756 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + R+ + R Sbjct: 757 RNGY--------------------------VTNFFGRKCFIPLIHDKK-----LKQFAER 785 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643 +Q S DI+ M K ++L +HDE++ E P+ Sbjct: 786 AAINAP------IQGTSADIIKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELEL 839 Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 V + +M S +P+ E ++ Sbjct: 840 VIPIIKKIME--YSTNIDVPIITEIRAGNNWK 869 >gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d] Length = 827 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 90/664 (13%), Positives = 184/664 (27%), Gaps = 148/664 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 288 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLSFLK 344 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALN---FSEHLTKMEEGKALIARFC 136 + + + R T +LA L K + K+ + + Sbjct: 345 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWIPHEKIKDFKTKSKVEKLE 404 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + A + EY ++ L + E + + Sbjct: 405 Q-----------LDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEF 449 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G++ID +L++ E L+ I+ L + L L+ + + Sbjct: 450 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NK 507 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S T + L + LIL + L D ++ T G + Sbjct: 508 SRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 566 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R IAS Sbjct: 567 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 602 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 603 LLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 659 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ + + Sbjct: 660 NF--------------GLVYGMGS------------------------------KKLSET 675 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + +A+ + + + E + + RV + R Sbjct: 676 LNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDRIKG 735 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + I Q + D+L GM Sbjct: 736 DYLREG------------------------------------VNAIFQGSASDLLKLGML 759 Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 760 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNNEV-YPLRVPLETSAFV 818 Query: 670 AKRY 673 A R+ Sbjct: 819 ANRW 822 >gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] Length = 887 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 94/692 (13%), Positives = 189/692 (27%), Gaps = 147/692 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLF 75 K + A E V+ E + T + S +++ D + + + Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSL-----KNACL-ALNFSEHLT-K 124 +R + G + S+ + G L ++ L + + Sbjct: 430 QRK-LLREYGYKLDG-AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSE 487 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 + + + F ++ Y + + + + +L D E Sbjct: 488 LVFPEEAPSLFEMPGEENLRYFTQVSRVIHELARILHF-------EMQEQGQLKIYEDIE 540 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSSRQTYA 240 L + + G + L+ +L + + +E +G + Sbjct: 541 LPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQ 600 Query: 241 LRMYLFLITGIDLV-------DMSEGTLKSILS----HSNITQLAKDLILNRLASSGSAI 289 L+ LF G+ ++ +L+ S+ Q L R Sbjct: 601 LQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQT 660 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L +A +DGR+ T Q AS TGR S QN+P Sbjct: 661 --VEGLQKAAVADGRVHTTFQQNAAS-TGRLSSTAPNLQNIP------------------ 699 Query: 350 GETIADPLGLASDCVRSCIIASNG-------KKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I + + L+ AD + IE R++ +A ++ I+A+ Sbjct: 700 ------IRTDEGRRIRGAFIVAPKILDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAY 753 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 A+GED++ ++ F ++V+ + RA K M L Y L++ Sbjct: 754 ADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRFGLAKQLNISSD 808 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 T+ F+ + + + Q + + G R + + Sbjct: 809 EAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------RRSLPDLDSPNR 859 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 E ++ ++ N Sbjct: 860 TRREAAERAALNAPIQGTAADII---------------------KIAMINIHRRLQEEN- 897 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 L M L VHDEI+ E Sbjct: 898 ---------------------------LKTRML----------LQVHDEIILEVAAGERE 920 Query: 643 SVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M++ +PL + K + Sbjct: 921 AAQRILVEEMSEAIE--LKVPLDVQVGWGKSW 950 >gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018] gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] Length = 1033 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 98/688 (14%), Positives = 200/688 (29%), Gaps = 156/688 (22%) Query: 31 TLCAYAWDDEPVKLWDRTEQS------AMPSDLLQYLRDETVMCVAHNSLFERILFK--K 82 L + ++ + D + L +++ V H+ L K K Sbjct: 454 VLVMLSQNNAAIVYSDVLNGDSSEDCNKICHKLKDFIKMYESSIVLHDYKKHIALLKSLK 513 Query: 83 TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKG 138 + + + T + + ++++ LN K E A Sbjct: 514 IVDNNYSFNPLLDTRLASYLIEPDFRNENIEDMAEHVLNIHVENEKSNEEPAQGELDFVL 573 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187 P + + + Q E + T L + + D E + Sbjct: 574 EDSDNPEELNQEEDKRKKQ---EKRILETAITIRLLAKQYAIKLDERKQTGLMVDVEMPV 630 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + + D G +D+ ++ +++ A E + + + + + I + + L+ LF Sbjct: 631 SRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVANKPI-NLQSPKQLQQLLFE 689 Query: 248 ITGIDLVDMSEG----TLKSILSHS--------NITQLAKDLILNRLASSGSAILKLNTL 295 G+ ++ T L +Q L+ +R + I + +L Sbjct: 690 DMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLKQI--VQSL 747 Query: 296 SE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + A DGR+ T + A TGR S QN+P Sbjct: 748 IDSARYEDGRIHTTFEQTIA-ATGRLSSSDPNLQNIP----------------------- 783 Query: 355 DPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R+ I N +L+ D + +E R++A + ++ IKAF +G D + Sbjct: 784 -NRNVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVA 842 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + + P+++VS +QR+ K M L Y T L + + Sbjct: 843 SLVYKIPVEQVSPDQRSHVKAMSYGLAYG-----LSTYGLAKQLSISPAA---------- 887 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 E++K+ + GV + L + + Sbjct: 888 -----------------------------AEVLKEKYFDTFGGVHDYLESLVDKARKLGY 918 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 RR + + + + Sbjct: 919 TQTMF--------------------------GRRRYFPKLNSTNRASRESAERA------ 946 Query: 594 GGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M K+ ++L +HDE+V E V + Sbjct: 947 ---ALNAPIQGSAADIMKLAMIQVDKDLREAKVKSRVILQIHDELVLEIAHGEADIVENI 1003 Query: 648 CS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 M +PL ++ Sbjct: 1004 VKNAMEHTVE--LDVPLNVSTGLGADWQ 1029 >gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] Length = 889 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 396 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 440 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 441 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 500 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 501 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 559 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 560 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 619 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 620 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 654 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 655 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 714 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 715 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 769 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 770 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 816 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 817 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 836 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 837 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 879 Query: 668 YEAKRY 673 E + Sbjct: 880 NEGATW 885 >gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] Length = 891 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 94/661 (14%), Positives = 183/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + Q L+ + + H+ K Sbjct: 352 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLSFLK 408 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L + I F S Sbjct: 409 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EEWIPHEKIKDFKTKS 462 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 R H A + EY ++ L + E + + +G+ Sbjct: 463 KAEKLEQLDRELH--ALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 516 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I++L + L L+ + + S Sbjct: 517 KIDAPYFKRLEQEFKNELHVLERQILELIGADF-NLNSPKQLSEILYEKLELPQ-NKSRS 574 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 575 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 633 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 634 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 669 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 670 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 725 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 726 -------------GLVYGMGS------------------------------KKLSETLNI 742 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + Sbjct: 743 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYL 802 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 803 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 826 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 827 ERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFIAKR 885 Query: 673 Y 673 + Sbjct: 886 W 886 >gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455] gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455] Length = 870 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 377 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 421 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 422 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 481 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 482 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 540 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 541 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 600 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 601 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 635 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 636 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 695 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 696 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 750 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 751 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 797 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 798 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 817 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 818 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 860 Query: 668 YEAKRY 673 E + Sbjct: 861 NEGATW 866 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 99/728 (13%), Positives = 191/728 (26%), Gaps = 163/728 (22%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------QSA 52 +D+ET G+ Y + + D P + Sbjct: 88 LDVETT--------GLDIYNDI--LVGICLYNPDLPSAYVPFNHTDLQNRRVEGQMTEEE 137 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLK 110 + +L YL ++ + C+ HN F+ + G I + W T++ + LK Sbjct: 138 CKAVMLPYLANKDLKCINHNIKFDDKMITFNWGQRIANV-WWDTNIASWVLNENEKHGLK 196 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK-RDVEA 169 + + + G C + + W L+ + + EA Sbjct: 197 PLYNKYILNGEGSDEDFGDLFEGIPCNYIPIEIFSIYGANDGFKTWALYQFQKQYLNPEA 256 Query: 170 TRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 R +++L + E L + + RG I D +L +E ++ + Sbjct: 257 KRADYRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNEEMQEKEALCDAYV 316 Query: 229 DG------------------IIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHS 268 + + L+ I + V E GT I+ Sbjct: 317 REFEEYIKENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRKEPRGTGDKIIQMH 376 Query: 269 NITQLAK------------DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGAS 315 D ++ + + T YGA Sbjct: 377 RNKAKKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKTNAVHTTFNQYGAV 436 Query: 316 RTGRWSG---CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 S QN+P E+S +R A + Sbjct: 437 TGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKIFKARD 469 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KLV D + IE RVLA+ +G++ A+ G+D+Y +K + P + +E G Sbjct: 470 GYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYEDC-REFYPDG 528 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 V ++ + + Sbjct: 529 TVNPEG-------------------------------KHRRTTMKSVLLGIMYERGAQAI 557 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + + + V QL + + Sbjct: 558 GEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEEYGYVTTIK-------------- 603 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R+ D++ + +++Q S DI+ Sbjct: 604 ------------GRKRRLPDMQLSNHDDYRYAEAHRQS-------LNSVIQGSSADIMKL 644 Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665 M + +++TVHDE++ E P+ L S M + LP+ Sbjct: 645 AMIEIYRDPRYKELDCHMIITVHDELIMEVPEANVKVGAELLVSTMKRVGHSLIDLPMSV 704 Query: 666 EGYEAKRY 673 + + + Sbjct: 705 DAEVNEYW 712 >gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16] Length = 893 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 91/661 (13%), Positives = 182/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ +D+ E + + Q L+ + + H+ K Sbjct: 354 KVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFSQILQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L + I F + Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EEWIPHEKIKDF--KT 462 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + A + EY ++ L + E + + +G+ Sbjct: 463 KSKAGKLEQLDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFVKVLMGMEFQGF 518 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I++L + L L+ + + S Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELP-KNKSHS 576 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 577 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 635 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 636 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 671 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 672 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 727 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 728 -------------GLVYGMGS------------------------------KKLSETLNI 744 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + + Sbjct: 745 PLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDYIKGNYL 804 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 805 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 828 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 829 ERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFIAKR 887 Query: 673 Y 673 + Sbjct: 888 W 888 >gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] Length = 889 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 346 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 395 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 396 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 440 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 441 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 500 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 501 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 559 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 560 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 619 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 620 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 654 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 655 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 714 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 715 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 769 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 770 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 816 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 817 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 836 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 837 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 879 Query: 668 YEAKRY 673 E + Sbjct: 880 NEGATW 885 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 377 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 421 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 422 GKGVKKAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKME 481 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 482 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 540 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 541 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 600 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 601 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 635 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 636 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 695 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 696 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 750 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 751 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 797 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 798 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 817 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 818 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 860 Query: 668 YEAKRY 673 E + Sbjct: 861 NEGATW 866 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 112/702 (15%), Positives = 192/702 (27%), Gaps = 183/702 (26%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +DIE PL A + L A + D E + S L + L Sbjct: 32 LDIEATGLSPL----------DARMRLLQLA-AGGETFVVDVFEVKDL-SPLREALE-GG 78 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKNACLALNFSE 120 + V HN+ ++ GI + T + A+ SL+ Sbjct: 79 PLKVLHNAKYDYSFLLAQHGIRLSP--LFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQET 136 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + + EY RD L +RL L Sbjct: 137 ---------------------VDKTARREDWSKELSREQLEYAARDAAILLPLHERLQEL 175 Query: 181 SDGE---------RDLWLLDQTINDRGYRIDLDLVLKLQEL-----------IAQERKKL 220 + E + G R+D+ +L+ + + + Sbjct: 176 LEREGLGPVSRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQP 235 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + + G + + F GI+L D TL + A +L Sbjct: 236 EGVLPLEGLGPRLNLNSPQQIME-AFRSIGIELPDTRMWTL------LTVDHPAARDLLE 288 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 L T V GR+ + TGR + Q +P ++ Sbjct: 289 YRELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP-TGRLACTNPNVQQIPHED----- 342 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 R C +A G LV+AD + IE R+LA ++G+ + Sbjct: 343 -----------------------EFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFV 379 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF GED++ T A F P ++V+KEQR+ K + L Sbjct: 380 EAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGL-------------------- 419 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A + + + A + V + Sbjct: 420 ------------------------AYGRGPRSLAAQLGTDEERARRLIDEYFATYGRVQR 455 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 L E ++EG S R + +G S Sbjct: 456 Y---LNETANRALKEGAL-----------------------RTLSGRLRKFGRTRGLSSA 489 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVS- 634 A + + +Q S DI + ++ +HDE V Sbjct: 490 ERGALKR---------EAMNYPIQGTSADIAKLALIFIHSELRDLDARLINCIHDEFVVE 540 Query: 635 ETPDTPYFSVGTLCSLMTKNPS-WAKGLPLKAEGYEAKRYRK 675 + + + S M + K +P++ E ++ +RK Sbjct: 541 CAEEQAEEAASRVRSAMVRAGERLLKRVPVEVEVAVSREWRK 582 >gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 575 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 32 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 81 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 82 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 126 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 127 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 186 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 187 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 245 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 246 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 305 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 306 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 340 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 341 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 400 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 401 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 455 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 456 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 502 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 503 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 522 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 523 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 565 Query: 668 YEAKRY 673 E + Sbjct: 566 NEGATW 571 >gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 724 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 98/733 (13%), Positives = 189/733 (25%), Gaps = 165/733 (22%) Query: 9 ETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 ET + G+ Y + + D P Sbjct: 76 ETYLTGVSEYVLDVETTGLDVYNDI--LVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + + +L YL + ++ C+ HN F+ + G I + W T++ Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANV-WWDTNIAGWVLNENEKH 192 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF---GEYCK 164 LK + + + G C + + W L+ +Y + Sbjct: 193 GLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLR 252 Query: 165 RDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D R +++L + D E L + + RG I D +L E + ++ Sbjct: 253 EDH--PRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKL 310 Query: 224 IVKL------------------TDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKS 263 + + + + I + V E GT Sbjct: 311 CDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDK 370 Query: 264 ILSHSNITQLAK------------DLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQ 310 I+ D ++ + E + + T Sbjct: 371 IVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAKTNAVHTTYN 430 Query: 311 FYGASRTGRWSG---CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 YGA S QN+P E+S +R Sbjct: 431 QYGAKTGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKI 463 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 A +G K V D + IE RVL++++G++ +A+ G+D+Y +K + P + +E Sbjct: 464 FRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDC-RE 522 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 G V ++ + + Sbjct: 523 FYPDGTVNAEG-------------------------------KHRRTTMKSVLLGIMYER 551 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + + + QL + + + Sbjct: 552 GAKAIGEQFDRSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRK------ 605 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RRL + Y + ++Q S Sbjct: 606 ------------------RRLPEMQLPDHDDYRYQEAHRQS---------LNAVIQGSSA 638 Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG 660 DI+ M +V+TVHDE++ E P+ L + M + Sbjct: 639 DIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLID 698 Query: 661 LPLKAEGYEAKRY 673 LP+ + + Sbjct: 699 LPMSVDAEVNDYW 711 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 90/643 (13%), Positives = 172/643 (26%), Gaps = 129/643 (20%) Query: 44 LWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +D T+ ++ D + V HN+ +F + G +I T++ A Sbjct: 378 WFDTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEH-GWEIAGVTM-DTALAAYL 435 Query: 103 NGLPS---SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L L+ +A ++ + + Sbjct: 436 VKPGRRSFALDALSIEYLHRELAPA---AADGQLAFGTDEQAEADALMSQARAVLDLGEA 492 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 G + L D E LL + G D + +++ A + Sbjct: 493 LGGKLEEVGAVEL--------LHDVELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQ 544 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN------ITQ 272 + ++ + L+ F + ++ + + Sbjct: 545 QAVKEAHAAVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHE 603 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L ++ +R + + + L + +++DGR+ T A TGR S QN+P Sbjct: 604 LPVIMLRHREQARLRST--VEGLIKTIAADGRIHTTFSQTVA-ATGRLSSTDPNLQNVP- 659 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAW 391 +R + G + L+ AD + IE RV+A Sbjct: 660 -----------------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 696 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ + I+AF +GED++ T ++ F+ V E R K M L Y Sbjct: 697 LSEDLGLIEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYG-----LSAF 751 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L ++ V + FE + + + D+ ++G R Sbjct: 752 GLSQQLGIEPAEARVLMDTYFERFGGVRDYLRRVVDEARATGYTATMLGR---------R 802 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + E + A++ ++ M R + SSR L Sbjct: 803 RYLPDLNSDNRQRRESAERMALNAPIQGTA--ADIVKVAMLNVDRALTDAKLSSRLL--- 857 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 Sbjct: 858 -------------------------------------------LQVHDE----------- 863 Query: 632 IVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IV E V TL M+ S PL + Sbjct: 864 IVLEVAPGEREQVETLVRHEMSSAVSLRA--PLDVSVGAGPDW 904 >gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 893 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 99/665 (14%), Positives = 189/665 (28%), Gaps = 151/665 (22%) Query: 31 TLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 YA + + + +L L V + H + R F + G + Sbjct: 355 LAIYYATE-GTGHCYALEPRFLSDTEQKELEDLLTSHAV--ITHEAKRLRHAF-RECGFE 410 Query: 88 IPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 I + + A G SL +L+ F + Sbjct: 411 I-GELAEDVELEAYLLGPDQREYSLPTLSEKYLQRSLPVAESAQLSLLRDF----SELAG 465 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + + + + + EL++ L E + + G + +D Sbjct: 466 QAQVVYDLHE-----VLFKQLETTQLAELYRGL------ELPVQADLYELEKHGVAMSMD 514 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------ 258 ++ +L E + ++ ++ E+ G + L+ LF + ++ Sbjct: 515 VLNQLLEELTEQV-EVAEEAAYNAIGHKVNLASPMQLQTVLFEELQMPKTKKTKRGYTTN 573 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 L + + L L+ +R I + L AV +DGR+ T Q A T Sbjct: 574 AEALVELYEKTQHPFLQH-LLAHRDKIKMRQI--VEGLISAVGADGRIHTTFQQTVA-AT 629 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376 GR S QN+P +R + G L Sbjct: 630 GRLSSTEPNLQNIP------------------------ARTAEGMRIRGAFVPGTGFDYL 665 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++ ++ I+AF +GED++ T A F P+++V+ R+ K Sbjct: 666 LTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRTMAAMVFAVPVEEVTPALRSQIKATS 725 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 L Y + L Sbjct: 726 YGLAYG-----LSSYGLSQQL--------------------------------------- 741 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + +K+ + + GV + ++ E Sbjct: 742 GISVPEARKLKEKYFERFGGVGRFLGEVVEEARERG------------------------ 777 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RR D+ + L + +Q + DI+ M Sbjct: 778 --FTATMMGRRRYLPDLNSGNTNLRAMAERA---------ALNAPIQGTAADIIKLAMHL 826 Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + ++L VHDE+V E + V + +M+ LPL Sbjct: 827 VMRVLRERGLASRVLLQVHDELVLEVVASELNEVIQIVTDVMSGAAE--LSLPLDVSFGV 884 Query: 670 AKRYR 674 ++ Sbjct: 885 GASWQ 889 >gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS] gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS] Length = 880 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 77/655 (11%), Positives = 165/655 (25%), Gaps = 131/655 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 +AW Q + + + ++ + LGI++ Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKP----I---ATYDFKRSKVLLSHLGIEL- 390 Query: 90 SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + L + + KG+ + P Sbjct: 391 VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPDKD 443 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ K + ++L + E L + + G +++ + Sbjct: 444 VLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQ 503 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLK 262 + E + L ++I + + L LF + T Sbjct: 504 DMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAV 562 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 ++L IL+ + + L + + +DG++ ++TGR S Sbjct: 563 NVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R L+ +D Sbjct: 622 VDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSSDY 657 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALG 440 + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + + Sbjct: 658 SQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIV 717 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y L + + + FE + +++ + + + + L Sbjct: 718 YG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFK 772 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVH 559 EL + ++ + SA + + + + + + Sbjct: 773 RRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + + Sbjct: 824 FR-------------------------------------------------AKMLLQVHD 834 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + Sbjct: 835 E---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGHSW 876 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 107/709 (15%), Positives = 191/709 (26%), Gaps = 187/709 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 LFID E K I L + + ++D L + L Sbjct: 23 KYLFIDTE-----VAVKSFEDIDFFNDKIRLIQIG-NYSKIFVYDMFRIPQFSEHLKELL 76 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLALN 117 ++ V + HN F+ K GI + T + ++ SL L Sbjct: 77 ENKGV--IGHNLKFDIKFLKTNFGIF--PQIVFDTMIASQLLSEDSREKHSLSALSYRL- 131 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K SP + Y +DV+ RE+F L Sbjct: 132 -------------TDNHLDKSQQRSPWGIKNLT------EEQLRYAAKDVQVLREIFPVL 172 Query: 178 IPLSDG------------------------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + E I RG +D L+ + + + Sbjct: 173 RDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDMLQKV 232 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL---KSILSHSNI 270 + + ++ + + + +L G+ L +G+L S L Sbjct: 233 STDYQR---EYIDFVRRYGVDPFSPQKVTNWLTSKLGLKLPTTQKGSLSSQDSALRRYID 289 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + L+ R KL L + +GR+ + GA TGR + QN+ Sbjct: 290 REEVRKLLHIRSEKKIL--DKLKELKAHL-INGRIYTQFKQIGAP-TGRMASMRPNLQNI 345 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 R +R GKKL+VAD + IE R+ A Sbjct: 346 TRD------------------------------LRVLFRPPEGKKLIVADYSQIELRIAA 375 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ IKAF+ G+D++ T + D+++K++R + K + L Y + Sbjct: 376 EYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSLME 435 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 A + + ++ + Sbjct: 436 YAR--------------------------------------NSYGVDISLKDAQIFHSRF 457 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 ++G + E + R V R Sbjct: 458 FEVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVVRRFTE------------------- 498 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---NA-TKNGYDIVL 626 VQ D+L + IV Sbjct: 499 --------------------------AVNFPVQGTGSDLLKMAVVFFGKLKEDRDAGIVN 532 Query: 627 TVHDEIVSETPDTPYFSVGTLC-SLMTKNPS-WAKGLPLKAEGYEAKRY 673 VHDEI+ E ++ + + M + K +P++ E + + Sbjct: 533 LVHDEIIVECSESIADEIRDILSESMLRAGKILLKKVPVEFEVEIVESW 581 >gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium rectale DSM 17629] Length = 724 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 98/733 (13%), Positives = 189/733 (25%), Gaps = 165/733 (22%) Query: 9 ETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE------------- 49 ET + G+ Y + + D P Sbjct: 76 ETYLTGVSEYVLDVETTGLDVYNDI--LVGICLYNPDLPSFYVPFNHTDLQNKRVEGQMT 133 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PS 107 + + +L YL + ++ C+ HN F+ + G I + W T++ Sbjct: 134 EEECKAVMLPYLANGSLKCINHNIKFDDKVVTFQWGQRIANV-WWDTNIAGWVLNENEKH 192 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF---GEYCK 164 LK + + + G C + + W L+ +Y + Sbjct: 193 RLKPMYNKYILNGEGSDEDFGDLFEGIPCNYIPIDIFAIYGANDGFKTWALYQFQKKYLR 252 Query: 165 RDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D R +++L + D E L + + RG I D +L E + ++ Sbjct: 253 EDH--PRADYRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKL 310 Query: 224 IVKL------------------TDGIIRSSRQTYALRMYLFLITGIDLVDMSE--GTLKS 263 + + + + I + V E GT Sbjct: 311 CDEYVAKFDKFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDK 370 Query: 264 ILSHSNITQLAK------------DLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQ 310 I+ D ++ + E + + T Sbjct: 371 IVQQHRNKAKKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAKTNAVHTTYN 430 Query: 311 FYGASRTGRWSG---CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 YGA S QN+P E+S +R Sbjct: 431 QYGAKTGRFSSSDTVTKINLQNIPSHEKS---------------------------IRKI 463 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 A +G K V D + IE RVL++++G++ +A+ G+D+Y +K + P + +E Sbjct: 464 FRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYEDC-RE 522 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 G V ++ + + Sbjct: 523 FYPDGTVNAEG-------------------------------KHRRTTMKSVLLGIMYER 551 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + + + QL + + + Sbjct: 552 GAKAIGEQFDKSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRK------ 605 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RRL + Y + ++Q S Sbjct: 606 ------------------RRLPEMQLPDHDDYRYQEAHRQS---------LNAVIQGSSA 638 Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG 660 DI+ M +V+TVHDE++ E P+ L + M + Sbjct: 639 DIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPEDHIKEGADLLVNTMKRVGHSLID 698 Query: 661 LPLKAEGYEAKRY 673 LP+ + + Sbjct: 699 LPMSVDAEVNDYW 711 >gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397] gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397] Length = 877 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 327 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 376 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 377 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 421 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 422 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKME 481 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 482 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 540 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 541 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 600 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 601 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 635 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 636 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 695 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 696 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 750 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 751 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 797 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 798 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 817 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 818 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 860 Query: 668 YEAKRY 673 E + Sbjct: 861 NEGATW 866 >gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200] Length = 877 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 75/655 (11%), Positives = 170/655 (25%), Gaps = 131/655 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI---LFKKTLGIDIP 89 +AW Q + + + ++ + LGI++ Sbjct: 339 IGFAWGHGEQIYASTDLGLLATDSFKQVFQKP----I---ATYDFKRSKVLLSHLGIEL- 390 Query: 90 SKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + L ++ + ++ I P D Sbjct: 391 VAPSYDARLANYLLSTVEDNELSTIARIF--TDISLEEDD----IVYGKGAKRAVPDKDV 444 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + + ++ + + ++ ++L + E L + + G +++ + Sbjct: 445 LLEHLARKVKVLLDSKSQMLD-KLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQ 503 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLK 262 + E + L ++I + + L LF + T Sbjct: 504 DMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAV 562 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L IL+ + + L + + +DG++ ++TGR S Sbjct: 563 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QN+P +R L+ +D Sbjct: 622 VDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSSDY 657 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALG 440 + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + + Sbjct: 658 SQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIV 717 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y L + + + FE + +++ + + + + L Sbjct: 718 YG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFK 772 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVH 559 EL + ++ + SA + + + + + + Sbjct: 773 RRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGG 823 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + + Sbjct: 824 FR-------------------------------------------------AKMLLQVHD 834 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 835 E---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 84/601 (13%), Positives = 163/601 (27%), Gaps = 145/601 (24%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 T + + L D+++ + ++ L K ++ Sbjct: 368 TNNNWFSDIIFNLLVDKSIKKITYSLK---PLLKFYANQSHEITAIEDLELMQYALSAGL 424 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S F + ++ + + Y + Sbjct: 425 S----------------------QKNLFEEALKETLIENIIIESAKIVINFISLY--KQT 460 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + K SD + + + + G ++D + + +L E KL+E+I L Sbjct: 461 ILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIFAL 520 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVD-----MSEGTLKSILSHSNIT-QLAKDLILNR 281 + + L LF + S T IL + +L+L Sbjct: 521 SGTKF-NIGSPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLLRW 579 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++L + + + + T ++ TGR S QN+P Sbjct: 580 RQLTKLKNTYTDSLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQNVP---------- 629 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + +R IA G KL+ AD + IE R+L+ IA D +A Sbjct: 630 --------------IRSSEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F N +DI+ T + FN +++ E R K + G+ Sbjct: 676 FINKDDIHTQTACQIFNLQKHELTSEHRRKAKAIN--------------FGIIYGIS--- 718 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + + K + A+++GV + Sbjct: 719 ---------------------------AFGLAKQLNVTNGKASEYIKKYFAEYKGVQEYM 751 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + + ++ R+ + Sbjct: 752 EQTKAFA--------------------------SSNGYVTNFFGRKCFVPLIHDKK---- 781 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSE 635 R +Q + DI+ M N K +VL +HDE++ E Sbjct: 782 -LKQFAERAAINAP------IQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFE 834 Query: 636 T 636 Sbjct: 835 A 835 >gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32] Length = 893 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 86/615 (13%), Positives = 168/615 (27%), Gaps = 132/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125 + H+ K + + + R T +LA L Sbjct: 397 IIGHDLKPLLSFLKANYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP--- 453 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + + A + EY ++ L + E Sbjct: 454 ---HEKIKDF--KTKSKAEKSEQLSLELNALKRLCEYFEKGGLEE----GLLALAREVET 504 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID +L++ E L+ I++L + L L Sbjct: 505 PFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEIL 563 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + + + S T + L + LIL + L D ++ Sbjct: 564 YEKLELP-KNKSRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 622 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 623 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 657 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + + AF G DI++ T F + + Sbjct: 658 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDL 714 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 715 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 735 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + +A+ + + + E + + RV Sbjct: 736 -----KKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 790 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + I Q Sbjct: 791 DFTGANDYIKGNYLREG------------------------------------VNAIFQG 814 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 815 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YP 873 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + AKR+ Sbjct: 874 LRVPLETSAFIAKRW 888 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 90/635 (14%), Positives = 169/635 (26%), Gaps = 126/635 (19%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107 A Q+L + HN+ +F + G + T++ A Sbjct: 373 DEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYLVKPGRRS 430 Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +L L + ++ + FGE ++ Sbjct: 431 FALDALSLEYLGRELAPA---TADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ 487 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 V AT L D E +L ++ G D D + ++ A ++ ++ Sbjct: 488 -VGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAH 539 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILN 280 + L+ LF + ++ + ++L Sbjct: 540 DAVGREF-NLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLR 598 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L +++++DGR+ T A TGR S QN+P Sbjct: 599 HREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP--------- 647 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ AD + IE RV+A ++ ++ I Sbjct: 648 ---------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLI 692 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF +GED++ T ++ F D V E R K M L Y L++ Sbjct: 693 EAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNI 747 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + FE + + D+ + ++G R + Sbjct: 748 DAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGR---------RRYLPDLNS 798 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + E + A++ ++ M R R + SSR L Sbjct: 799 DNRQRRETAERMALNAPIQGTA--ADIVKIAMLRVHRALTEARLSSRML----------- 845 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 IV E Sbjct: 846 -----------------------------------LQVHDE-----------IVLEIAPG 859 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M PL + + Sbjct: 860 ERERVEEIVRREMADAVQLRA--PLDVSVGVGQNW 892 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 86/581 (14%), Positives = 149/581 (25%), Gaps = 135/581 (23%) Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L L E +A + + + F + Sbjct: 11 LDALSVEYLG-RELSPAAAADSGQLAFGADEQAEQDALMIKARTVLDLGEAFRGRLEEVG 69 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 A LSD E L + G D D + ++++ A ++ ++ Sbjct: 70 AAGL--------LSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAA 121 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILN 280 + L+ LF G+ L + ++ L + Sbjct: 122 VGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHELPVIML-RH 179 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + + + L + +S GR+ T A TGR S QN+P Sbjct: 180 REQARLRST--VEGLIKTISPGGRIHTTFNQTVA-ATGRLSSTDPNLQNIP--------- 227 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ AD + IE RV+A ++ +D I Sbjct: 228 ---------------VRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLI 272 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF +GED++ T ++ F +V E R K M + GL Sbjct: 273 EAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAM--------------SYGLAYGLSA 318 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + + + + GV Sbjct: 319 FGLSGQ------------------------------LGIGADEARRLMDTFFERFGGVRD 348 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + E + + RR D+ D Sbjct: 349 YLQRVVEEARAIGYTETML--------------------------GRRRYLPDLTSDNRQ 382 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIV 633 ++ +Q + DI+ M ++L VHDEIV Sbjct: 383 RREMAERM---------ALNAPIQGTAADIVKIAMLKVDAALTAGELSSRMLLQVHDEIV 433 Query: 634 SETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 E V L M PL + Sbjct: 434 LEIAPGERERVEELVRREMAGAFQLRA--PLDVSVGVGADW 472 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 90/635 (14%), Positives = 169/635 (26%), Gaps = 126/635 (19%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-- 107 A Q+L + HN+ +F + G + T++ A Sbjct: 384 DEADEKAFAQWLAAADRPKILHNAKGVMRVFAEH-GWRVEGVTM-DTALAAYLVKPGRRS 441 Query: 108 -SLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +L L + ++ + FGE ++ Sbjct: 442 FALDALSLEYLGRELAPA---TADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ 498 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 V AT L D E +L ++ G D D + ++ A ++ ++ Sbjct: 499 -VGATGLLA-------DVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAH 550 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILN 280 + L+ LF + ++ + ++L Sbjct: 551 DAVGREF-NLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLR 609 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + + L +++++DGR+ T A TGR S QN+P Sbjct: 610 HREQAKLRVT-VEGLIKSIATDGRIHTTFNQTVA-ATGRLSSTEPNLQNIP--------- 658 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ AD + IE RV+A ++ ++ I Sbjct: 659 ---------------VRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLI 703 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF +GED++ T ++ F D V E R K M L Y L++ Sbjct: 704 EAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYG-----LSAFGLSQQLNI 758 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + FE + + D+ + ++G R + Sbjct: 759 DAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGR---------RRYLPDLNS 809 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + E + A++ ++ M R R + SSR L Sbjct: 810 DNRQRRETAERMALNAPIQGTA--ADIVKIAMLRVHRALTEARLSSRML----------- 856 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 IV E Sbjct: 857 -----------------------------------LQVHDE-----------IVLEIAPG 870 Query: 640 PYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M PL + + Sbjct: 871 ERERVEEIVRREMADAVQLRA--PLDVSVGVGQNW 903 >gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51] Length = 885 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 90/661 (13%), Positives = 183/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 346 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 402 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L + I F + Sbjct: 403 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EEWIPHEKIKDF--KT 454 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + A + EY ++ L + E + + +G+ Sbjct: 455 KSKAGKLEQLDRELNALRRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 510 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I++L + L L+ + + S Sbjct: 511 KIDAPYFKRLEQEFKNELHVLERQILELIGADF-NLNSPKQLSEILYEKLELP-KNKSHS 568 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 569 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 627 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 628 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 663 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 664 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 719 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 720 -------------GLVYGMGS------------------------------KKLSETLNI 736 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + +A+ + + + E + + RV + + Sbjct: 737 PLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYL 796 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 797 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 820 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 821 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFIAKR 879 Query: 673 Y 673 + Sbjct: 880 W 880 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLSQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYL 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14] gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14] gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 80/681 (11%), Positives = 172/681 (25%), Gaps = 140/681 (20%) Query: 11 RSPQPLPKVGVWAYAEQAV-ITLCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDETVMC 68 S + + I A+ + + L L ++ Sbjct: 318 FSAEDIFYFETLRDNYHCEAIIGFAW------------GHGEQIYASTDLSLLATDSFKQ 365 Query: 69 VAHN--SLFERI---LFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEH 121 V + ++ + LGI++ + + L Sbjct: 366 VFQKPIATYDFKRSKVLLSHLGIEL-VAPSYDARLANYLLSTVEDNELSTIARI------ 418 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + + KG+ + P H+ K + ++L Sbjct: 419 -FTDISLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQ 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G +++ + + E + L ++I + + L Sbjct: 478 NIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQL 536 Query: 242 RMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 LF + T +L IL+ + + L Sbjct: 537 GSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQ 596 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + +DG++ ++TGR S QN+P Sbjct: 597 DYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------I 631 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R L+ +D + IE RVLA I+G++ I AF G DI+ +T + Sbjct: 632 RLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMR 691 Query: 416 AFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F V+ R K + + Y L + + + FE Sbjct: 692 VFGIDKAADVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKSYIDTYFER 746 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQ 533 + +++ + + + + L EL + ++ + Sbjct: 747 YPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRSFAERTAIN 797 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 SA + + + + + + Sbjct: 798 SPIQGSAADILKIAMINLDKALQAGGFR-------------------------------- 825 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 + + IVL E P+ ++ L M Sbjct: 826 -----------------AKMLLQVHDE---IVL--------EVPNDELTAIKKLVKDTME 857 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 A +PL + + + Sbjct: 858 AAVDLA--VPLCVDESTGQSW 876 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEIKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKAIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILTDGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20] Length = 893 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 94/663 (14%), Positives = 185/663 (27%), Gaps = 146/663 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE------TVMCVAHNSLFERILFKK 82 + A+ ++D+ E P L ++L++ V + H+ K Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSL-EFLQNAFFKMLQHVQIIGHDLKPLLSFLKA 411 Query: 83 TLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALN---FSEHLTKMEEGKALIARFCK 137 + + + R T +LA L K + K + + + Sbjct: 412 KYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIPHETIKDFKTKNKVEKLEQ 471 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + A + EY ++ L E L + + + Sbjct: 472 -----------LDMELNALKRLCEYFEKGGLEE----GLLALARGVETPLMKVLMGMEFQ 516 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G++ID +L++ E L+ I+ L + L L+ + + S Sbjct: 517 GFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NKS 574 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T + L + LIL + L D ++ T G + T Sbjct: 575 RSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TAT 633 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R IAS L Sbjct: 634 GRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCL 669 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 670 LGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSIN 726 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ + + Sbjct: 727 F--------------GLVYGMGS------------------------------KKLSETL 742 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + +A+ + + + E + + RV + Sbjct: 743 NIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDHIKGN 802 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + I Q + D+L GM Sbjct: 803 YLREG------------------------------------VNAIFQGSASDLLKLGMLK 826 Query: 617 ATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEA 670 ++ ++L VHDE++ E + + + ++ + +PL+ + A Sbjct: 827 VSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLKVPLETSAFVA 885 Query: 671 KRY 673 KR+ Sbjct: 886 KRW 888 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEIKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54] gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54] Length = 877 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1] gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1] Length = 895 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 82/642 (12%), Positives = 154/642 (23%), Gaps = 131/642 (20%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL---FKKTL 84 I A + L D +L Q+ ++ N+ ++ + Sbjct: 337 GQILGLAICNEKGFFYLNDIINDL----ELEQFFLNDNFKK---NT-YDIKKTVTLLRNN 388 Query: 85 GIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 I + + + + N + + + + KG + Sbjct: 389 NIKFSFSSFTYDAMIASYVLNPNVT----SRIQNLANIVETELFVEEDELFYGKGVKQNK 444 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRID 202 D +L Y L + E L + + +G ID Sbjct: 445 EIDTASKAKFIVGKLELLYSTHKPIINLLKENNQFNLYEKIELPLVEVLFNMEQKGILID 504 Query: 203 LDLVLKLQELIAQERKKLDEDIV---KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 + K ++L+E + K + ++ LF G+ Sbjct: 505 KVELDKQTARTLFLIEELEEKMKVILKDQISENFNFGSPKQIKELLFDQIGLPSNKKQ-S 563 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T K L +L+L + L + + D ++ + TGR Sbjct: 564 TDKEALEKIIHLHPVINLLLEHRKLNKLYSTYLRGFEKFIFDDNKVHTIFNQT-LTNTGR 622 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+ R I++N K Sbjct: 623 LSSSEPNIQNI------------------------SVKDELQREARKIFISNNDTKFFSF 658 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA + ED + F N D++ K F Sbjct: 659 DYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIF---------------------- 696 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 + +N + TS + + + + K+ Sbjct: 697 ---------------------KLEENEEITSDQRRIAKVFNFGIIYGLSDFGLSNDLKIS 735 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + ++ L + RR+ N K Sbjct: 736 IPEAKRFIDDYYLSFPKLMTYKNSLINQATVNGYAETYANRRRIVNELASSNFMVKNF-- 793 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 R+ +Q + DIL M N K Sbjct: 794 -----GNRI----------------------------AVNMPIQGTAADILKVAMNNIHK 820 Query: 620 N------GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKN 654 + +HDEI+ E ++ +V + M Sbjct: 821 EFRENNLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQNA 862 >gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564] gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564] Length = 877 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 82/665 (12%), Positives = 179/665 (26%), Gaps = 144/665 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85 + A++ E + D + + + + ++T + V ++ + G Sbjct: 333 DLVGFAWSC-GEKLYATD--KLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLHRFG 384 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 +D+ + + L + ++ +L + ++ Sbjct: 385 VDLQAPAFD---------------SRLAKYLLSTVEDNEIATIASLYGQTYLIDDETFYG 429 Query: 146 DCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIND 196 + + + VE L ++L D E+ L + + Sbjct: 430 KGVKKALPEREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEI 489 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 490 AGITVKKETLLEMQAENDLVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYT 548 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L IL+ + + L + + +DG++ Sbjct: 549 KKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQ 608 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P +R + Sbjct: 609 -DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPE 643 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R Sbjct: 644 WEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSEDVTANDR 703 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y L + + + FE + +++ + + Sbjct: 704 RNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREA 758 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + L EL + ++ + Sbjct: 759 RDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI----- 804 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 ++ + T Sbjct: 805 ----------------LKIAMIQLDKALVAGGYQTK------------------------ 824 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 + IVL E P + + L M + +PL A+ Sbjct: 825 ---MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIADEN 868 Query: 669 EAKRY 673 E + Sbjct: 869 EGATW 873 >gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141] Length = 877 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] Length = 960 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 80/613 (13%), Positives = 167/613 (27%), Gaps = 126/613 (20%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFC 136 ++ G+++ T + ++ + +A Sbjct: 452 MAQSAGLNV-PIPLFDTKLAGYLADPDYTGHTIDEYAEHFL--RIDVPAVQTQAQGTLDF 508 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 D P + +QA + E + L+ E + ++ + Sbjct: 509 DNMDDETPTQDDKDLGLQAALVSAMARHLARELQQREQYALLRCI--ELPVSVVLYRMEQ 566 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G +D + L A+E +++ + + LF G+ + Sbjct: 567 EGAAVDRMRLDSLLATFAEESGRMERMAWDAAGSEF-NLSSPKKIGKVLFEDMGLTPLRK 625 Query: 257 SEG------------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DG 303 ++ + S ++ +R + I + TL +A++ DG Sbjct: 626 TKSGHYTTNAATLTTLYANAEEGSAAYVFLGAILRHRGVNKLQQI--VQTLIDAINRTDG 683 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + A TGR S QN+P Sbjct: 684 HIHTTFEQTVA-ATGRLSSTDPNLQNIP------------------------NRNAEGRD 718 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 RS I + G L+ AD + +E R++A +G++ I AF +G D + + + P+D Sbjct: 719 TRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFHRYVASLVYGIPVD 778 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +S +QR+ K M L Y + L + + F + + + Sbjct: 779 DISGDQRSHVKAMSYGLAYG-----LSSYGLSQQLGITPKEADALKQQYFRTFGKVHEYL 833 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + E + + G R + + + E + Sbjct: 834 ESLVATARERGYTETMFGR---------RRYFPALRSPNRMVREAAERAALNAPIQGSAA 884 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + + ++ + + + Sbjct: 885 DI-----------------------MKMAMIRAERALRS--------------------- 900 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGL 661 Q IVL +HDE+V + + S L M A + Sbjct: 901 QG---------------MRSRIVLQIHDELVVQLAPGEHESATALVKDAMEHAVQLA--V 943 Query: 662 PLKAEGYEAKRYR 674 PL ++ Sbjct: 944 PLDVSTGIGTDWQ 956 >gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6] gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6] Length = 877 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 81/667 (12%), Positives = 178/667 (26%), Gaps = 148/667 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFE---RILFKKT 83 + A++ D+ T++ + + +L + ++ + Sbjct: 333 DLVGFAWSCGDK----LYATDKLELLQEPIFKDFLEKTPLRV------YDFKKAKVLLNR 382 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 G+D+ + + +R L + ++ +L + ++ Sbjct: 383 FGVDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDETF 427 Query: 144 PYDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTI 194 + + + VE L ++L D E+ L + + Sbjct: 428 YGKGVKKAIPEREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKM 487 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G + + +L++Q +KL ++I +L + L + LF + Sbjct: 488 EIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLALPLE 546 Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 T +L IL+ + + L + + +DG++ Sbjct: 547 YTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY 606 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 607 VQ-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFV 641 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ Sbjct: 642 PEWENSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTAN 701 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + + Y L + + + FE + +++ + Sbjct: 702 DRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVR 756 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + + L EL + ++ + Sbjct: 757 EARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI--- 804 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 ++ + T Sbjct: 805 ------------------LKIAMIQLDKALVAGGYQTK---------------------- 824 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAE 666 + IVL E P + + L M + +PL A+ Sbjct: 825 -----MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIAD 866 Query: 667 GYEAKRY 673 E + Sbjct: 867 ENEGATW 873 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] Length = 880 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 166/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRTT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G+ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLGS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] Length = 893 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 89/661 (13%), Positives = 182/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L + K + Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEELIPHE--TIKDFKTKSRVEK 468 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 ++ + A + EY ++ L + E + + +G+ Sbjct: 469 LEQ------LDMELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGF 518 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E L+ I+ L + L L+ + + S Sbjct: 519 KIDAPYFKRLEQEFKDELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NKSRS 576 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 577 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 635 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 636 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 671 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 672 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF- 727 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 728 -------------GLVYGMGS------------------------------KKLSETLNI 744 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + Sbjct: 745 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDHIKGNYL 804 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 805 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 828 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 829 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMAKR 887 Query: 673 Y 673 + Sbjct: 888 W 888 >gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 686 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 48/359 (13%), Positives = 96/359 (26%), Gaps = 82/359 (22%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-------- 53 + +D ET + + A + ++ + T + + Sbjct: 356 KLVAVDTETDNLDSM----------SANLVGISFGLANGEACYIPLTHKEQVTLEPQQSD 405 Query: 54 --------------------------PSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 +L L V + N ++ +F G+ Sbjct: 406 LFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESADVKKIGQNIKYDLTIFANH-GVQ 464 Query: 88 IPSKRWICTSVLARTNGLP--SSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + T + + T ++ L + GK Sbjct: 465 VEGVAF-DTMLESYTLNSTGRHNMDELADRYLGHKTIEFEEIAGKGKNQL---------- 513 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQT 193 A + +Y D + T +L + L P + E L + Sbjct: 514 -----TFDKIAIDVASQYAAEDADVTMKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSR 568 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 I G ID + +L I Q +L++ + G I + T L+ LF G+ Sbjct: 569 IERNGVLIDPEKLLAQSVEIEQRLSELEQLVH-SEAGEIFNLASTKQLQEILFTKLGLPV 627 Query: 253 ---LVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLR 306 + T + +L L L++ S + L ++ GR+ Sbjct: 628 LKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVH 686 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ +D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPDIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 339 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 389 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 390 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 442 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 501 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 502 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 560 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL + + L + + +DG++ ++TGR Sbjct: 561 AVDVLERLAPIAPIVAKILAYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 619 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 620 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 655 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 656 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 715 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + + +++ + + + + L Sbjct: 716 IVYG-----ISDFGLSNNLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGYVETL 770 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 771 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 821 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 822 GGFR-------------------------------------------------AKMLLQV 832 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 833 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 876 >gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261] gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261] Length = 877 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 184/666 (27%), Gaps = 146/666 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE---RILFKKTLG 85 + +++ D KL+ + + + + ++T + V ++ + G Sbjct: 333 DLVGFSWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-----YDFKKAKVLLNRFG 384 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 +D+ + + +R L + ++ +L + ++ Sbjct: 385 VDLQAPAFD-----SR----------LAKYLLSTVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195 + + + F E+ R + E L+ D E+ L + + Sbjct: 430 KGVKKAIPE-REKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G ++ + +L++Q +KL ++I +L + L + LF + Sbjct: 489 IAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLELPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ Sbjct: 643 EREDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKGAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELAEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus] Length = 866 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 86/648 (13%), Positives = 168/648 (25%), Gaps = 147/648 (22%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLPSSLKNACLALNF 118 V N+ F R + + G D K V A Sbjct: 314 KCPVVCFNAKDFVRTVL-QLYGEDDSWKHVADFVGLDPRVAAWLIDPSD----------- 361 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRL 177 + + K L + Y + T +L +L Sbjct: 362 TAPSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKL 416 Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E L + + + +D + + + L+ K+L+++ G Sbjct: 417 KAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGE 475 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILN 280 LR LF + L+ + T +++L+ LIL Sbjct: 476 QFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILE 535 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L + G + T G + TGR S Q + + Sbjct: 536 YRQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKP 593 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 TI+ R+ ++S G + AD + IE R+LA ++G+ +K Sbjct: 594 WNFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 644 Query: 401 AFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F E + T ++ + PI++V+ R K + ++ Y G + Sbjct: 645 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC------- 697 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + + K++ + Sbjct: 698 -------------------------------------LGVTVLEATHFLERFLQKYKKIK 720 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + + RR + Sbjct: 721 DFAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ 754 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDE 631 +Q R+ +VQ + D+ M + +V +HDE Sbjct: 755 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 805 Query: 632 IVSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673 ++ E DT L +M + +PLK + + Sbjct: 806 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYM 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + L EL + ++ + Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 79/657 (12%), Positives = 167/657 (25%), Gaps = 135/657 (20%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN--SLFERI---LFKKTLGID 87 +AW L L ++ V + ++ + LGI+ Sbjct: 265 IGFAWGHGEQIYASTD---------LSLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIE 315 Query: 88 IPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + L + + KG+ + P Sbjct: 316 L-VAPSYDARLANYLLSTVEDNELSTIARI-------FTDISLEEDDTVYGKGAKRAVPD 367 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 H+ K + ++L + E L + + G +++ Sbjct: 368 KDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRAT 427 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGT 260 + + E + L ++I + + L LF + T Sbjct: 428 LQDMAEQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYST 486 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +L IL+ + + L + + +DG++ ++TGR Sbjct: 487 AVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYVQ-DLTQTGRL 545 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S QN+P +R L+ + Sbjct: 546 SSVDPNLQNIP------------------------IRLEQGRLIRKAFTPSHEDAVLLSS 581 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELA 438 D + IE RVLA I+G++ I AF G DI+ +T + F V+ R K + Sbjct: 582 DYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFG 641 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y L + + + FE + +++ + + + + L Sbjct: 642 IVYG-----ISDFGLSNNLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETL 696 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRD 557 EL + ++ + SA + + + + + + Sbjct: 697 FKRRREL---------PDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQA 747 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + + Sbjct: 748 GGFR-------------------------------------------------AKMLLQV 758 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 IVL E P+ ++ L M A +PL + + + Sbjct: 759 HDE---IVL--------EVPNDELTAIKKLVKDTMEAAVDLA--VPLCVDESTGQSW 802 >gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] Length = 854 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 153/500 (30%), Gaps = 121/500 (24%) Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + ++ G +++ ++ + + + +++ E+I G + + Sbjct: 456 MPLVPVLVSMEKSGIKLEEPVLQDVISDLKERLERIVEEIT-SAAGESINLNSPKQVGCL 514 Query: 245 LFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 LF G+ V ++ L+ + ++L A S + L Sbjct: 515 LFEKLGLPPVKKTKTGYSTDVTVLEQLAELPEPHNAVPSMLLEHRALSKMSSGFALPLMS 574 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +V DG +R T + + TGR S QNLP Sbjct: 575 SVCGDGIIRSTFE-SDTTGTGRLSSRDPNLQNLP------------------------AY 609 Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 G SD ++S +I G+ V AD + +E RVLA I+GE F +G DI+ T + Sbjct: 610 GEWSDRIKSSLIPREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMV 669 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F V+KE R K++ L Sbjct: 670 FGVDSSMVTKELRRSAKMVTFGLL------------------------------------ 693 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 A + + + + + + A GV +T+ + +G Sbjct: 694 --------YGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEAY---VTKSADEAIAKGY 742 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + + R +V + ++ Sbjct: 743 TETL-----------------------FGRIRPLEEVVTGNTRDRGHIRRV--------- 770 Query: 597 LTENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 + +Q + D+ + M +VL VHD IV E P+ V L + Sbjct: 771 AINSPIQGTAADLAKKAMIAVSRSFAEDPDVSMVLQVHDSIVCECPEERSEEVLAELQEI 830 Query: 651 MTKNPSWAKGLPLKAEGYEA 670 M S A +PL+ EG Sbjct: 831 MKNVASLA--VPLETEGKIG 848 >gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52] Length = 889 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 86/615 (13%), Positives = 169/615 (27%), Gaps = 132/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125 + H+ K + + + R T +LA L + Sbjct: 393 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EE 446 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + A + EY ++ L + E Sbjct: 447 WIPHEKIKDF--KTKSKAGKLEQLDMELNALKRLCEYFEKGGLEE----GLLALAREVET 500 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID +L++ E L+ I+ L + L L Sbjct: 501 PFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVDF-NLNSPKQLSEIL 559 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + + + S T + L + LIL + L D ++ Sbjct: 560 YEKLELP-KNKSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 618 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 619 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 653 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + + AF G DI++ T F + + Sbjct: 654 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDL 710 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 711 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 731 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + + +A+ + + + E + + RV Sbjct: 732 -----KKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 786 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + I Q Sbjct: 787 DFTGVNDHIKGNYLREG------------------------------------VNAIFQG 810 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 811 SASDLLKLGMLKVSERFKNNPLVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YP 869 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + AKR+ Sbjct: 870 LRVPLETSAFMAKRW 884 >gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A] Length = 893 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 89/660 (13%), Positives = 184/660 (27%), Gaps = 140/660 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 + + R T +LA L + I F + Sbjct: 411 AKYQVSVEDIRIQDTQILAFLKNPEKVGFDEVLKQY-----LKEEWIPHEKIKDF--KTK 463 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + + A + EY ++ L + E + + +G++ Sbjct: 464 NKAEKLELLSVELNALKRLCEYFEKGGLEE----GLLALAREVETPFVKVLMGMEFQGFK 519 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 ID +L++ E L+ I++L + L L+ + + S T Sbjct: 520 IDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLELP-KNKSHST 577 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + L + LIL + L D ++ T G + TGR Sbjct: 578 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRL 636 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +R I+S L+ Sbjct: 637 SSHSPNLQNIP------------------------VRSPKGLLIRKGFISSSKEYCLLGV 672 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 673 DYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF-- 727 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ + + + Sbjct: 728 ------------GLVYGMGS------------------------------KKLSETLNIP 745 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + +A+ + + + E + + RV + + + Sbjct: 746 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGVNDHIKGNYLR 805 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 I Q + D+L GM ++ Sbjct: 806 EG------------------------------------VNAIFQGSASDLLKLGMLKVSE 829 Query: 620 N-----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + + + ++ + +PL+ + AKR+ Sbjct: 830 RFKNNPSVRLLLQVHDELIFEIEEKNALELQREIQRILNDEV-YPLRVPLETSAFIAKRW 888 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] Length = 877 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYL 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + L EL + ++ + Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6] gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6] Length = 877 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 181/666 (27%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ +D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCEDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + L EL + ++ + Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] Length = 918 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 88/677 (12%), Positives = 170/677 (25%), Gaps = 147/677 (21%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 + ++ I + D L D + +L + +E V V ++ Sbjct: 337 HIDKPEIYAAYFNVDGNIWLLDDMAQ----IHRVLDIVAEEKVKVVGYDLK---NALFAL 389 Query: 84 LGIDIPS-KRWICTSVLARTNGLPSS-LKN---ACLALNFSEHLTKMEEGKALIARFCKG 138 L +P + + + L K+ + K Sbjct: 390 LQNGLPLFTPFFDVMLAYEVINNKGKYMDFYKILEDQLGID-VSDKLLKAKRKKTLTADD 448 Query: 139 SID--------------------SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + + N + Y V +++ +L Sbjct: 449 IKERYANICKSLKKTNNDVVNAALGDVESSDENARIGHEDALLYLLETVNI-FKVYDKLK 507 Query: 179 PLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E L + ++ + G +D + + + ++ +L + I +L Sbjct: 508 SQIEEDDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAELLDKIYELA 567 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF ++ ++ T +L T DLIL S Sbjct: 568 GFEF-NVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAEVLQKLRKTHPIIDLILEFRKVS 626 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + +DG++R GAS TGR + Q +P Sbjct: 627 KLNSTYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPALQTIP-------------- 671 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R A + V AD + IE R+L ++ ++ I AF +G Sbjct: 672 ----------VKTDMGKRIRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSG 721 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 EDI+ VSK R+ K + + Y L++ + Sbjct: 722 EDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGMS-----DFGLSNELEISRKDAK 776 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 F + + + G ++ + + Sbjct: 777 KYIDEYFAKHRAVYEYMEAQKSIAKQTGAVRTETGRIRKI---------PEINAQNIMVR 827 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 RL + + Sbjct: 828 N-------------------------------------LGERLAMNSP---IQGMGADIM 847 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 +L Y Q + IVL +HDE+V + + V Sbjct: 848 KLAMNNVYRAIQK----QGL---------------DAKIVLQIHDELVIDASVSDGEKVK 888 Query: 646 T-LCSLMTKNPSWAKGL 661 L M + GL Sbjct: 889 KLLKDEMEAAYNLKTGL 905 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 180/666 (27%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDK----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYL 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + + L EL + ++ + Sbjct: 758 ARDKSYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL E P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 80/497 (16%), Positives = 134/497 (26%), Gaps = 106/497 (21%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G ID + + +L I+ + R + L Sbjct: 489 ELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLDELTRSIIGYAGEEF-NIRSSQQL 547 Query: 242 RMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 + LF GI + T +L D +L L L + Sbjct: 548 AVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKLRSTYLEPLPK 607 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V DGRL ++ TGR S QN+P Sbjct: 608 MVGEDGRLHTHFNQL-STATGRLSSSQPNLQNIP------------------------IR 642 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G+ +R+C A+ G L AD + IE RVLA + + I AF + EDI+ T A Sbjct: 643 GVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHARTAALIH 702 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + I V+ ++R K + L Y G + L ++Q + F Sbjct: 703 DKDISAVTPDERRGAKTINFGLIYGMGVQKL-----ARELQIKQTEAQEFTEKYFAKMAT 757 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 ++++ + L G R + L+ Sbjct: 758 LKAYYDTVVKDAETHGFVTTLAGR---------RRLLPELHSRNNQLSAQARRQAVNTVI 808 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 + ++ + R R G +L Sbjct: 809 QGSAADII---------------------KMAMVQAH-----------KDKRLRELGAQL 836 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656 ++ E P+ G L +M Sbjct: 837 I----------------LQVHDE-----------LIIEAPEANIKEAGGRLLEIMQTVAK 869 Query: 657 WAKGLPLKAEGYEAKRY 673 +PLK + K + Sbjct: 870 --LDVPLKVDMGVGKNW 884 >gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180] gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180] Length = 897 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 86/664 (12%), Positives = 176/664 (26%), Gaps = 144/664 (21%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERI 78 + I A+ D+ E + + Q L+ + + H+ Sbjct: 357 KDKKILALAFLLQDQ-GYFLPLEEALFSPFSLEFLQNAFSQMLQHAQI--IGHDLKPLLS 413 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFC 136 K + + + R T +LA L I F Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFK 467 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + + F + + + E + + Sbjct: 468 TKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLA--------RGVETPFMKVLMGMEF 519 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G++ID +L++ E L+ I+ L + L L+ + + Sbjct: 520 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLGEVLYEKLELP-KNK 577 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S T + L + LIL + L D ++ T G + Sbjct: 578 SHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 636 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R IAS Sbjct: 637 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 672 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R+LA + + ++AF G DI++ T F + ++K++R+I K + Sbjct: 673 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSI 729 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ + + Sbjct: 730 NF--------------GLVYGMGS------------------------------KKLSET 745 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + +A+ + + + E + + R + Sbjct: 746 LNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRAFDFTGANDYIKG 805 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + I Q + D+L GM Sbjct: 806 NYLREG------------------------------------VNAIFQGSASDLLKLGML 829 Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 830 KVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFV 888 Query: 670 AKRY 673 A R+ Sbjct: 889 ANRW 892 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 126/420 (30%), Gaps = 117/420 (27%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 +L + +++ + + L + ++ GR+ + + TGR S Sbjct: 1 MLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV-TATGRLSS 59 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R +A +G K++ D + Sbjct: 60 TDPNLQNIP------------------------VRNEEGRRIRQAFVAPHGWKIMAVDYS 95 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++G+ + AF +G+DI+ T A+ PID+VS EQR K + Sbjct: 96 QIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF----- 150 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G+ A + + Sbjct: 151 ---------GLIYGMS------------------------------AFGLAKQLGIPRGE 171 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + ++ GV+Q +D A + Sbjct: 172 AQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIF------------------------ 207 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619 RRL + + N + R +Q + DI+ + M + Sbjct: 208 --GRRLHLP----EITSRNAMRRKAAERAAINAP------MQGTAADIIKKAMLLVDEWI 255 Query: 620 -----NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +++ VHDE+V E ++ + + LM A +PL AE + Sbjct: 256 EREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELA--VPLVAEAGHGDNW 313 >gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7] Length = 885 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 92/661 (13%), Positives = 179/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ D+ E + + Q L+ ++ + H+ K Sbjct: 346 KVLALAFLLQDQ-GYFLPLEEALFSPFSSEFLQNAFSQMLQHASI--IGHDLKPLLSFLK 402 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L I F S Sbjct: 403 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKTTS 456 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + A + Y ++ L + E + + +G+ Sbjct: 457 KAEKLER--LDMELNALKRLCAYFEKGGLEE----GLLALAREVETPFVKVLMGMEFQGF 510 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E K L+ I++L + L L+ + + S Sbjct: 511 KIDAPYFKRLEQEFKDELKVLERQILELIGVDF-NLNSPKQLSEVLYEKLELP-KNKSHS 568 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 569 TDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 627 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 628 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 663 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F ++KE+R+I K + Sbjct: 664 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGE---LAKEKRSIAKSINFG 720 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 L + + + Sbjct: 721 LV--------------------------------------------YGMGSKKLSETLNI 736 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + Sbjct: 737 PLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYVKGNYL 796 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 797 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 820 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + AKR Sbjct: 821 ERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMAKR 879 Query: 673 Y 673 + Sbjct: 880 W 880 >gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464] Length = 893 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 92/664 (13%), Positives = 186/664 (28%), Gaps = 148/664 (22%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 354 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKNAC-LALN---FSEHLTKMEEGKALIARFC 136 + + + R T +LA L K + K+ + + Sbjct: 411 AKYQVSLENIRIQDTQILAFLKNPEKVGFDEVVREYLKEELIPHETIKDFKTKSKVEKLE 470 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + A + EY ++ L E L + + Sbjct: 471 Q-----------LDMELNALKRLCEYFEKGGLEE----GLLALARGVETPLMKVLMGMEF 515 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G++ID +L++ E L+ I+ L + L L+ + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEILYEKLELPQ-NK 573 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S T + L + LIL + L D ++ T G + Sbjct: 574 SRSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TA 632 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R IAS Sbjct: 633 TGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYC 668 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 669 LLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 725 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G+ + + Sbjct: 726 NF--------------GLVYGMGS------------------------------KKLSET 741 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + +A+ + + K + E + + RV + + Sbjct: 742 LNIPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSKAFTLLGRYRVFDFAGVNDHIKG 801 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + I Q + D+L GM Sbjct: 802 NYLREG------------------------------------VNAIFQGSASDLLKLGML 825 Query: 616 NATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669 ++ ++L VHDE++ E + + + ++ + +PL+ + Sbjct: 826 KVSERFKNNPSVRLLLQVHDELIFEIEEKNALKLQQEIQRILNDEV-YPLRVPLETSAFM 884 Query: 670 AKRY 673 AKR+ Sbjct: 885 AKRW 888 >gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4] gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] Length = 877 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 83/675 (12%), Positives = 177/675 (26%), Gaps = 150/675 (22%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--------LQYLRDETVMCVAHNSLFERI 78 + Y D+ +W ++ L +L ++ ++ Sbjct: 321 HFELFGENYHTDNLVGFVWSCGDKLYATDKLELLQDPIFKDFLEKTSLRV------YDFK 374 Query: 79 ---LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + G+D+ + + L + ++ +L + Sbjct: 375 KVKVLLQRFGVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQT 419 Query: 136 CKGSIDSPPYDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERD 186 ++ + + + VE L ++L D E+ Sbjct: 420 YLVDDETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQP 479 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + G + + +L++Q +KL ++I +L + L + LF Sbjct: 480 LAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLF 538 Query: 247 LITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 G+ T +L IL+ + + L + + + Sbjct: 539 EKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILA 598 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DG++ ++TGR S QN+P Sbjct: 599 DGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP------------------------ARLEQG 633 Query: 362 DCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F Sbjct: 634 RLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIE 693 Query: 421 -IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 D V+ R K + + Y L + + + FE + + Sbjct: 694 RPDDVTANDRRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIK 748 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 ++ + + + + L EL + ++ Sbjct: 749 NYMDEVVREARDKGYVETLFKRRREL---------PDINSRNFNIRGFAERTAINSPIQG 799 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + ++ + T Sbjct: 800 SAADI---------------------LKIAMIQLDKALVAGGYQTK-------------- 824 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWA 658 + IVL E P + + L M + Sbjct: 825 -------------MLLQVHDE---IVL--------EVPKSELVEMKKLVKQTMEEAIQ-- 858 Query: 659 KGLPLKAEGYEAKRY 673 +PL A+ E + Sbjct: 859 LSVPLIADENEGATW 873 >gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] Length = 866 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 84/496 (16%), Positives = 141/496 (28%), Gaps = 113/496 (22%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +++ + L + RG R+D + +L L + ++ + E + + I + Sbjct: 465 MNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEKVYEAAGCEI-NLNSPK 523 Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + LF G+ +V ++ L+ + +L A + Sbjct: 524 QIGELLFEKLGLPVVKKTKTGYSTDVSVLEQLREICGARCEIPGQLLEYRELQKMASGFV 583 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L A DG + T + + TGR S QNLP Sbjct: 584 QPLLSAAGGDGLIHSTFESLT-TGTGRLSSRDPNMQNLP--------------------- 621 Query: 353 IADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R C+I S G AD + IE RVLA ++G+ I+ F + DI+ Sbjct: 622 ---TYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTE 678 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T A F P D V+KE R K + L Y L + + + Sbjct: 679 TAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSV-----FGLASRLGTDRNTAFQIMDAY 733 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 F + + + EF L G + + A + + + Sbjct: 734 FAALPGVREYMETSKKKSLEFGYTSTLFGRRRPMDEIATGNQTKDHQK------------ 781 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 R+ + + T + Sbjct: 782 -----------------------------------RVAINAPIQGTAADITKIAMNKVAA 806 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSL 650 + G+ M L VHD IV E P L + Sbjct: 807 HFAGRDV--------------AMV----------LQVHDSIVCECPHDQAEQTALELSQV 842 Query: 651 MTKNPSWAKGLPLKAE 666 M +PLK E Sbjct: 843 MESAVH--LSVPLKTE 856 >gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis familiaris] Length = 947 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 76/644 (11%), Positives = 160/644 (24%), Gaps = 139/644 (21%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWI----CTSVLARTNGLPSSLKNACLALNFS 119 + N+ F R + + + A + Sbjct: 313 KCPVICFNAKDFVRTVLQIFGNEGSWKHVVHFVGLDPRIAAWLIDP-----------GEA 361 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----K 175 + K L + + + + + +L Sbjct: 362 ATSFEDLVAKFLESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLW 421 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L E L + + R++ + + + L+ K+L+++ G Sbjct: 422 QLFCTL--ELPLIPILAVMESHSIRVNREEMERTSALLGSRLKELEQEAH-FVAGEQFLI 478 Query: 236 RQTYALRMYLFLITGI-------DLVDMS----EGTLKSILSHSNITQLAKDLILNRLAS 284 L+ LF + L T +++L+ +IL Sbjct: 479 TSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNALQDLHPLPKIILEYRRV 538 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++ L V G + G + TGR S Q + + Sbjct: 539 HKTKSAFVDGLLAFVRK-GSISSMWNQTG-TVTGRLSARHPNIQGISKHPIKITKPQNFK 596 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 TI+ RS +A + AD + IE R+LA ++G+ +K F Sbjct: 597 GTEGTMLTISP---------RSMFVAPESHTFLAADFSQIELRILAHLSGDPELLKLFRE 647 Query: 405 --GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +D++ T ++ + P + V+ R K + ++ Y G + Sbjct: 648 SGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAAC----------- 696 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + +++ K++ + + Sbjct: 697 ---------------------------------LGVTVQEAAQFLESFLQKYKKIKDFVQ 723 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + RR V Sbjct: 724 TTIAQCHQTGYVASIM--------------------------GRRRPLPRVHDQDQ---Q 754 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSE 635 +Q R+ +VQ + D+ M + +V +HDE++ E Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKMAMIRIFRAVATSPTLTARLVAQIHDELLFE 808 Query: 636 TPDTPYFSVGTLCS-LMT-----KNPSWAKGLPLKAEGYEAKRY 673 D+ L M + +PLK + Sbjct: 809 VEDSQIPEFAALVRGTMESLQYVRALGLQLQVPLKVSLSAGPSW 852 >gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] Length = 829 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 90/627 (14%), Positives = 175/627 (27%), Gaps = 175/627 (27%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNG-LPSSLKNA 112 L D ++ + H + I P + + V+A L + L+ Sbjct: 333 LQDLFTDRSIKKIFH-----------SDNIPHPDPTNDSFEDLKVIAYPLNTLNTDLEYL 381 Query: 113 -CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD-VEAT 170 L A H + +L+ + C E Sbjct: 382 FSHYLG---------------------------ETSREAFHKRLNELYEKLCNAMFTEKV 414 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L+ ++ L + + G +D++ +L L I+ + ++++ I + G Sbjct: 415 LTLYYKVDK------PLINAIKHMEKNGISLDVEQLLSLSTQISGKLEEIESKIFDIA-G 467 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILNRLASS 285 S + L LF I + + T +L+ +I D +L+ Sbjct: 468 KTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGYEIADYLLSWRHYI 527 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRT--GRWSGCVFQPQNLPRQERSEEILTQT 343 ++ L V+ + Y A+ T GR S QN+PR+ Sbjct: 528 KLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNIPRE---------- 577 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R A G + AD + IE R+LA+IA + A A Sbjct: 578 ------------------KEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALA 619 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +G D++ T ++ F T DK++ + R K + + Y L Sbjct: 620 SGTDLHTLTASQIFKT--DKITPDLRNKAKAVNFGIVYG-----ITNFGLSKQLA----- 667 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + ++ + Sbjct: 668 ----------------------------------ISKEEAASYIQKYFDEYPEIKIYMNH 693 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + ++ + ++ S T Sbjct: 694 IRNQARKDTYVKTMMNRKCP-----------------------------IQNINSNNRTI 724 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---YDIVLTVHDEIVSETPDTP 640 + R +Q + DI+ M + +V+ VHDE+V E Sbjct: 725 SLVAERSAINAP------IQGTAADIIRTAMVRMAQEKELLSHMVMQVHDELVFELETDV 778 Query: 641 YFS-VGTLCSLMTKNPSWAKGLPLKAE 666 + +M + + G+PL E Sbjct: 779 IQQLAKKIKRIMEE----SHGIPLLVE 801 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 79/610 (12%), Positives = 166/610 (27%), Gaps = 130/610 (21%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNA----CLALNFSEHLTKMEEGKALIARFCKGSI 140 G+ + + T + L+ + + Sbjct: 447 GVKL-PEPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEPEES 505 Query: 141 DSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D + L D L + + E + + + G Sbjct: 506 VQQKDDQLPRHTAIVGLLARNLSNSLDQREQFALLESV------EIPVSRVLYGMEHAGA 559 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 ++D++ ++ ++E +A + ++ G + + L+ LF G+ ++ Sbjct: 560 QVDMNRLMNMREQLASD-ANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKT 618 Query: 260 ----TLKSILSHSNIT--------QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLR 306 T + L Q L+L+R + I + TL +A + SDGR+ Sbjct: 619 GSYTTNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLKQI--VQTLIDATNGSDGRIH 676 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + A TGR S QN+P A +RS Sbjct: 677 TTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPAGREIRS 711 Query: 367 CIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + G + L+ +D + +E R++A ++G++ I+AF +G D + + + P+D+++ Sbjct: 712 AFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEIT 771 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 +QR+ K M L Y T L ++ F + + + + Sbjct: 772 SDQRSHVKAMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKQQYFATFGKVHEYLESL 826 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 E + + G R G+ + + + + Sbjct: 827 VSTAREKGYTETIYGR---------RRYFPGLKSPNRAVRDAAERAALNAPIQGSAADI- 876 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 ++ + Sbjct: 877 --------------------MKIAMIRADDALHES-----------------------GL 893 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664 + I+ E+V E L M A +PL Sbjct: 894 ASRII----LQIHD-----------ELVVEIAPGEAEQATALVKDAMEHAVDMA--VPLD 936 Query: 665 AEGYEAKRYR 674 ++ Sbjct: 937 VSTGIGSDWQ 946 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 72/449 (16%), Positives = 142/449 (31%), Gaps = 68/449 (15%) Query: 95 CTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T++ A +L + L E + Sbjct: 402 DTALAAYLVRPGQRSFTLDDLSLRYLRRELRAE------------TPQQQQLSLLDDDDT 449 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDL 205 + Q + ++ L L + + E + + + G +DL + Sbjct: 450 DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPM 509 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLK 262 + +LQ + + + G + L++ LF G+ ++ T Sbjct: 510 LTELQSQFGDQIRDA-AEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTTDA 568 Query: 263 SILSHSNIT--QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L +L + + ++ L +AV++DGR+ T A TGR Sbjct: 569 DALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIA-ATGRL 626 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P A +R + +G +L+ A Sbjct: 627 SSTEPNLQNIP------------------------IRTDAGRRIRDAFVVGDGYAELMTA 662 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 663 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 722 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y L + N + + F + + + ++ + ++ Sbjct: 723 AYG-----LSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVL 777 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGF 528 G R + + + E Sbjct: 778 GR---------RRYLPELDSSNRQVREAA 797 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 89/626 (14%), Positives = 172/626 (27%), Gaps = 120/626 (19%) Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLA 115 ++L D V +H+ + G + T++ A L + L Sbjct: 418 EWLADPAVPKASHDVKAVLHAL-RGRGWTLAGLT-SDTALAAYLAKPGQRSFDLADLALR 475 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 E + ++ + A + E + Sbjct: 476 YLRRELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELAD--ALGAELAEKEQN 533 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L L + E+ L + + G +D + L+ A + + +D + I + Sbjct: 534 GL--LLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVIGKEI-NL 590 Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILS---HSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ T L+ + + L+L+R A+ Sbjct: 591 GSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHRDATRLKVT 650 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +++++DGR+ T A TGR S QN+P Sbjct: 651 --VDGLLKSIAADGRIHTTYSQTIA-ATGRLSSTEPNLQNVP------------------ 689 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R+ + +G +L+ AD + IE R++A ++ + I+AF + D Sbjct: 690 ------IRTAAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDF 743 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T +K F VS EQRA K M L Y L + Sbjct: 744 HSETASKVFGVDAADVSPEQRAKIKAMNYGLAYG-----LSAFGLSGQLRISTEEARGLM 798 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 FE + + + D + ++G R + + E Sbjct: 799 DDYFETFGGVRDYLRSIVDVARKDGYTATMLGR---------RRYLPDLTSDNRQRREMA 849 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + + ++ V + Sbjct: 850 ERMALNAPIQGSAADII---------------------KVAMLRVHAALQAEGLRSR--- 885 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 + +VL E D +V L Sbjct: 886 ------------------------MLLQVHDE---LVL--------EVADGERDAVDALV 910 Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ + Sbjct: 911 RREMAAAHE--LSVPLEVSVGYGASW 934 >gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 912 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 95/665 (14%), Positives = 176/665 (26%), Gaps = 132/665 (19%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 L + + D D T +P D L ++L D + ++ G+ + Sbjct: 354 LVSLS-DGSRAVAIDLT--EILPEDEAVLARFLSDTDRPKLVADAKGSWHALS-ARGLTL 409 Query: 89 PSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTK-------MEEGKALIARFCK 137 S+ ++ L G++ A + Sbjct: 410 DGV-IADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVDESGAQANDGPGESQSAFDLE 468 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 A+ +A L D + L +D E + + D Sbjct: 469 ALTSDAVPATHMASARRAAVLLPLQVVLDEQMAARDAVGLF--TDLEMPVAATLTVMEDA 526 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D ++ + + E + + L+ LF + + Sbjct: 527 GIAVDDAVLAARETELDARVTHAAEGAYAAAGREL-NLSSPKQLQAVLFDELKMPKTRKT 585 Query: 258 EG---TLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 + T L+ + L+ +R A + L +A+ +DGR+ T Q Sbjct: 586 KTGYTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQT--VEGLRKAIQADGRIHTTFQQ 643 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P +R Sbjct: 644 TIA-ATGRLSSTDPNLQNIP------------------------ARHEEGMRIREAFTVG 678 Query: 372 NGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L+ AD + IE R++A ++G+ I+AF +GED++ A + V+ +QR+ Sbjct: 679 EGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVTAQQRS 738 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K M L Y T L + + F + + + + +Q Sbjct: 739 HVKAMSYGLAYG-----LSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQAR 793 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + G R + + E + Sbjct: 794 RDGYTETMFGR---------RRYLPDLTSDNRQRREMAERAALNAPIQGSAADIV----- 839 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + DV G + Q +S IL Sbjct: 840 ----------------KKAMIDVDGALTE-----------------------QGLSSRIL 860 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYE 669 DE++ E +V + L M +PL Sbjct: 861 ----LQIH-----------DELLIEVAPGEAAAVESLLKEQMGGAAE--LSVPLDVAVGR 903 Query: 670 AKRYR 674 + +R Sbjct: 904 GQTWR 908 >gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1] gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1] Length = 899 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 91/661 (13%), Positives = 182/661 (27%), Gaps = 142/661 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ ++D+ E + + + L+ + + H+ K Sbjct: 360 KVLALAFLYEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHACI--IGHDLKPLLSFLK 416 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGS 139 + + + R T +LA L + I F S Sbjct: 417 AKYQVPLENIRIQDTQILAFLKNPEKVGFDAVLKEYLK------EDLIPHEKIKDFKTTS 470 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + + A + EY ++ L E + + +G+ Sbjct: 471 KAEKSEQLSLE--LNALKRLCEYFEKGGLEE----NLLSLARGVETPFVKVLMDMEFQGF 524 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +ID +L++ E K L+ I+ L + L L+ + + S Sbjct: 525 KIDAPYFKRLEQEFKDELKVLERQILDLIGVDF-NLNSPKQLSEVLYEKLELPQ-NKSHS 582 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L + LIL + L D ++ T G + TGR Sbjct: 583 TDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGR 641 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R IAS L+ Sbjct: 642 LSSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLG 677 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F ++KE+R+I K + Sbjct: 678 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSINFG 734 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ + + + Sbjct: 735 --------------LVYGMGS------------------------------KKLSETLNI 750 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +A+ + + + E + + RV + + + Sbjct: 751 SLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYL 810 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I Q + D+L GM + Sbjct: 811 REG------------------------------------VNAIFQGSASDLLKLGMLKVS 834 Query: 619 KN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + ++L VHDE++ E + + + ++ + +PL+ + A R Sbjct: 835 ERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVANR 893 Query: 673 Y 673 + Sbjct: 894 W 894 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 189/655 (28%), Gaps = 128/655 (19%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A V + + + + L + D+ + S + + GID+ Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141 VLA + S ME G A F K + Sbjct: 384 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 432 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S P D ++ + A +L V+ + K + E+ L + + G + Sbjct: 433 SLPRDPSQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 490 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D + L + +E ++ ++I L + + L L+ GI+ VD ++ T Sbjct: 491 DSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 549 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L IL A+ + L + +++ R+ T G + TGR Sbjct: 550 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 608 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P +R + A Sbjct: 609 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 644 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+QR K + L Sbjct: 645 DYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGL 704 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y + L + + F + A +Q + ++ Sbjct: 705 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 759 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G + G A +++ R + L+ Sbjct: 760 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 795 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 +L ++ + + + Sbjct: 796 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 821 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E P + +L M +PL K + Sbjct: 822 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 189/655 (28%), Gaps = 128/655 (19%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A V + + + + L + D+ + S + + GID+ Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141 VLA + S ME G A F K + Sbjct: 384 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 432 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S P D + + A +L V+ + K + E+ L + + G + Sbjct: 433 SLPRDPAQYFGMFASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 490 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D + L + +E ++ ++I LT + + L L+ GI+ VD ++ T Sbjct: 491 DSQGLAVLDRDLTKELEECSQEIYDLTGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 549 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L IL A+ + L + +++ R+ T G + TGR Sbjct: 550 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 608 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P +R + A Sbjct: 609 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 644 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K++R K + L Sbjct: 645 DYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAVNFGL 704 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y + L + + F + A +Q + ++ Sbjct: 705 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 759 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G + G A +++ R + L+ Sbjct: 760 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 795 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 +L ++ + + + Sbjct: 796 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 821 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E P + +L M +PL K + Sbjct: 822 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863 >gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57] Length = 893 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 91/660 (13%), Positives = 182/660 (27%), Gaps = 140/660 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 + A+ +D+ E + + + L+ + + H+ K Sbjct: 354 KVLALAFLLEDQ-GYFLPLEEALFSPFSLEFLQNAFFKMLQHAQI--IGHDLKPLLSFLK 410 Query: 82 KTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 + + R T +LA L + I F + Sbjct: 411 AKYQVSLEDIRIQDTQILAFLKNPEKVGFDEVLKQY-----LKEEWIPHEKIKDF--KTK 463 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + A + EY ++ L + E + + +G++ Sbjct: 464 SKAGKLELLSVELNALKRLCEYFEKGGLEE----GLLALAREVETPFMKVLMGMEFQGFK 519 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 ID +L++ E L+ I++L + L L+ G+ + S T Sbjct: 520 IDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEILYEKLGLP-KNKSHST 577 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + L + LIL + L D ++ T G + TGR Sbjct: 578 DEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRL 636 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +R IAS L+ Sbjct: 637 SSHSPNLQNIP------------------------VRSPKGLLIRKGFIASSKEYCLLGV 672 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R+LA + + + AF G DI++ T F + ++KE+R+I K + Sbjct: 673 DYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINF-- 727 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G+ + + + Sbjct: 728 ------------GLVYGMGS------------------------------KKLSETLNIP 745 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + +A+ + + + E + + RV + + Sbjct: 746 LNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLR 805 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 I Q + D+L GM ++ Sbjct: 806 EG------------------------------------VNAIFQGSASDLLKLGMLKVSE 829 Query: 620 N-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + + + ++ + +PL+ + AKR+ Sbjct: 830 RFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLETSAFMAKRW 888 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 188/655 (28%), Gaps = 128/655 (19%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A V + + + + L + D+ + S + + GID+ Sbjct: 327 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 383 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141 VLA + S ME G A F K + Sbjct: 384 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 432 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S P D + + A +L V+ + K + E+ L + + G + Sbjct: 433 SLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 490 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D + L + +E ++ ++I L + + L L+ GI+ VD ++ T Sbjct: 491 DSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 549 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L IL A+ + L + +++ R+ T G + TGR Sbjct: 550 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 608 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P +R + A Sbjct: 609 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 644 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+QR K + L Sbjct: 645 DYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGL 704 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y + L + + F + A +Q + ++ Sbjct: 705 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 759 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G + G A +++ R + L+ Sbjct: 760 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 795 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 +L ++ + + + Sbjct: 796 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 821 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E P + +L M +PL K + Sbjct: 822 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 863 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 98/655 (14%), Positives = 188/655 (28%), Gaps = 128/655 (19%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 + A A V + + + + L + D+ + S + + GID+ Sbjct: 329 QLHGVALA-GANQVFYIEVSGVQEI-ALLKDFFADKATQFFGYRSKRDNHAL-RNSGIDV 385 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGS------ID 141 VLA + S ME G A F K + Sbjct: 386 HVTA--D-LVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFSKEWGAGSLPVQ 434 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 S P D + + A +L V+ + K + E+ L + + G + Sbjct: 435 SLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFETV--EQPLEAVLFAMECVGMPL 492 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D + L + +E ++ ++I L + + L L+ GI+ VD ++ T Sbjct: 493 DSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLGIEPVDKAKSTK 551 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L IL A+ + L + +++ R+ T G + TGR Sbjct: 552 AEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTFNQVG-TVTGRL 610 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVA 379 S QN+P +R + A Sbjct: 611 SCQDPNLQNIP------------------------VRSERGRSLREAFRVKKDNDYFLAA 646 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+QR K + L Sbjct: 647 DYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAVNFGL 706 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y + L + + F + A +Q + ++ Sbjct: 707 VYGQ-----QAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTML 761 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G + G A +++ R + L+ Sbjct: 762 GRER---ILSDWESSPG------------ARAASGRLAVNTRIQGSAAELI--------- 797 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 +L ++ + + + Sbjct: 798 -------KLAMLNISDEMRSRGLKSRL---------------------------LLQIHD 823 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ E P + +L M +PL K + Sbjct: 824 E-----------LLFEVPAEELEEMRSLVQEKMESAME--LSVPLVVNVLIGKNW 865 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 89/664 (13%), Positives = 175/664 (26%), Gaps = 131/664 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPS----DLLQYLRDETVMCVAHNSLFERILFK 81 + L A A D + A+ + L +L D H + + Sbjct: 350 DGGRAWLIAVASPDGSGAAI---KTEALTAHDTAALGAWLADPAAPKAFHEAKWAAHAL- 405 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKG 138 + G I + A L + + L + G+ ++ Sbjct: 406 RGQGFSIAGVT-TDIGLAAYIARPGQRSFQLPDLAVRY-LRRQLGPDDSGQKQLSLLDAE 463 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 D+ + + + D + L+ E L + + + G Sbjct: 464 QDDNAEANGAVSEAAAIRE---LGEALDDVLAKAGSADLLHT--MELPLTFVLGAMEEAG 518 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-- 256 +D D + L + ++ E + I + L++ LF G+ Sbjct: 519 IAVDQDALAGLHADFSARVQQAAESAYAVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTK 577 Query: 257 -----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 L+ + + L+ +L ++ L +AV DGR+ T + Sbjct: 578 TGHTTDADALQWLFERTEHPFLSH--LLEHRDATRLMTT-AQGLIKAVGPDGRIHTTFRQ 634 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P + +R + Sbjct: 635 DVA-ATGRLSSTDPNLQNIP------------------------VRTEEARRIRGVFVVG 669 Query: 372 NGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + L+ AD + IE R++A ++G++ I+AF GED++ ++AF PID+V E R Sbjct: 670 EGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVGAELRR 729 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K M L Y L + + + F + + + ++ Sbjct: 730 RVKAMSYGLAYG-----LSAFGLAQQLGVSGEEAKAQMEAYFARFGGVRDYLREVVEEAR 784 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + L G R + + + Sbjct: 785 RKGYTETLFGR---------RRYLPDLTSDNQQQRAVAERAALNAPIQGSAADII----- 830 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 ++ V + N + Sbjct: 831 ----------------KVAMIHVAEALAARNMRSR------------------------- 849 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYE 669 + +VL E + + L M +P+ Sbjct: 850 --MLLQVHDE---LVL--------EVAEGEQDELAALVAEQMGSAIE--LSVPMDVSVGF 894 Query: 670 AKRY 673 + Sbjct: 895 GPNW 898 >gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30] Length = 893 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 87/615 (14%), Positives = 167/615 (27%), Gaps = 132/615 (21%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKM 125 + H+ K + + + R T +LA L + Sbjct: 397 IIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLK------EE 450 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 I F + + A + EY LF + E Sbjct: 451 WILHEKIKDF--KTKSKAEKSEQLDRELNALKRLCEYF-EKGGLEEGLFALAR---EVET 504 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + +G++ID +L++ E L+ I++L + L L Sbjct: 505 PFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDF-NLNSPKQLSEIL 563 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + + + S T + L + LIL + L D ++ Sbjct: 564 YEKLELP-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKI 622 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR S QN+P +R Sbjct: 623 HTTFIQTG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIR 657 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 IAS L+ D + IE R+LA + + + AF G DI++ T F + + Sbjct: 658 KGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDL 714 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + G+ Sbjct: 715 AKEKRSIAKSINF--------------GLVYGMGS------------------------- 735 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + + + + +A+ + + + E + + RV Sbjct: 736 -----KKLSETLNIPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 790 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + I Q Sbjct: 791 DFTGANDYIKGNYLREG------------------------------------VNAIFQG 814 Query: 605 ISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWA 658 + D+L GM ++ ++L VHDE++ E + + + ++ + Sbjct: 815 SASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YP 873 Query: 659 KGLPLKAEGYEAKRY 673 +PL+ + AKR+ Sbjct: 874 LRVPLETSAFIAKRW 888 >gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 321 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 66/426 (15%), Positives = 119/426 (27%), Gaps = 117/426 (27%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314 +E L + +++ + S + L E ++ GR+ + A Sbjct: 1 TAEAVLAELAEQ---DFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 57 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+P +R +A G Sbjct: 58 -VTGRLSSSDPNLQNIP------------------------IRTAEGRRIRQAFVAPKGY 92 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ + R K Sbjct: 93 KLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKA 152 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + G+ A Sbjct: 153 INF--------------GLIYGMS------------------------------AFGLAK 168 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + + + + A++ GVL + A Sbjct: 169 QIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAEQG---------------------- 206 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 + RRL D+ L R +Q + DI+ + M Sbjct: 207 ----FVETIFGRRLYLPDINAKNQSLR---KGAERMAINAP------MQGTAADIIKKAM 253 Query: 615 KNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEG 667 ++L VHDE+V E + + + M+ A +PL E Sbjct: 254 VAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAAELA--VPLLVEV 311 Query: 668 YEAKRY 673 + Sbjct: 312 GVGNNW 317 >gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda melanoleuca] Length = 1040 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 81/618 (13%), Positives = 155/618 (25%), Gaps = 132/618 (21%) Query: 65 TVMCVAHNSL-FERILFKK--TLGIDIPSKRWI--CTSVLARTNGLP---SSLKNACLAL 116 + N+ F R + + G ++ + A S ++ Sbjct: 306 KCPVICFNAKDFVRTVLQFFGHDGSWKHVVHFVGLDPRIAAWLIDPGDAAPSFEDLVAKY 365 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 S K+ +R + Y + T EL Sbjct: 366 LESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLWQLFCTLEL--- 422 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + + ++D + + + L+ K+L+++ G Sbjct: 423 ---------PLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAH-FVAGEQFLIT 472 Query: 237 QTYALRMYLFLITGIDL-------VDMS----EGTLKSILSHSNITQLAKDLILNRLASS 285 LR LF + L T +++L +IL Sbjct: 473 SNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVH 532 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + ++ L A G + T G + TGR S Q + + Sbjct: 533 KTKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQNFKG 590 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 TI+ RS +A G + AD + IE R+LA ++G+ +K F Sbjct: 591 VEGAMLTISP---------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKLFQES 641 Query: 406 EDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 E + T ++ P + V+ R K + + Y G + Sbjct: 642 ERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAAC------------ 689 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + +++ K++ V + Sbjct: 690 --------------------------------LGVTVQEAAWFLESFLQKYKKVKDFVQT 717 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + RR V+ Sbjct: 718 TIAQCHQTGYVASIM--------------------------GRRRPLPRVRAQDQ---QL 748 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSET 636 +Q R+ +VQ + D+ M +V +HDE++ E Sbjct: 749 RAQAERQA------VNFVVQGSAADLCKMAMIRVFAAVAASPTLTARLVAQIHDELLFEV 802 Query: 637 PDTPYFSVGTLCS-LMTK 653 D+ + L M Sbjct: 803 DDSQIPELAALVRGTMES 820 >gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 587 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 100/697 (14%), Positives = 186/697 (26%), Gaps = 158/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQY 60 L++D E + K I L D+E + D + + + Sbjct: 24 YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 77 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLA 115 + ++ + + HN F+ K ++I K T + ++ SL + Sbjct: 78 IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDSNQRHSLSASAKR 133 Query: 116 ---LNFSEHLTKM-----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L+ + K + I K N + L + Sbjct: 134 FVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQLNQDNLHKKASGE-- 191 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T ++F + P++ E I G ID + KL + Q+ + D +K Sbjct: 192 --TFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKL---LKQKESEFQSDYMKF 246 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + YL I L + + L + + L+ R Sbjct: 247 KIKTGADPFSPQQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR--- 303 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + I+ + + R+ G + GA TGR S QN+P+ Sbjct: 304 ADKKIIDKIKEILQFTRNERVYGEFKQIGA-ATGRMSSLRPNLQNIPKN----------- 351 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ G K +VAD + IE R+ A ++ I AF Sbjct: 352 -------------------LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNE 392 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G+D++ T + D+++KE+R + K + L Y K A Sbjct: 393 GKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLVEYAKAN--------- 443 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + ++ + Sbjct: 444 -----------------------------YGVSISLQEAKKFHENYFKFYKSFKDWHDKV 474 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E R + + R+L Sbjct: 475 KEHLDK------------------------HRSIELETLLGRKL---------------- 494 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP 640 +Q D+L + +V VHDEI+ E Sbjct: 495 -----IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAAKD 549 Query: 641 YFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRYRK 675 + S M K +P+ E + + K Sbjct: 550 IEKAKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWNK 586 >gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672] gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672] Length = 791 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 83/542 (15%), Positives = 153/542 (28%), Gaps = 125/542 (23%) Query: 149 RANHVQAWQLFGEYCKRDVE--ATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDL 205 + + F E + E R L L + E + + + G ++ Sbjct: 352 KFTDKDTLESFFEKILQKKEFILDRMDKYNLWELYNKVEHKIIHILSEMEQTGILLNSKQ 411 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---DLVDMSEGTLK 262 + + E I + ++ + G + L LF + T + Sbjct: 412 LKETDEKIKELLNN-EKKAIDEMLGEEINLNSPKQLSFVLFEKLKMVPFKKNKTGYSTDE 470 Query: 263 SILSHS----NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRT 317 L + + IL S + LS+ + S GR+ + G + T Sbjct: 471 DSLRNMIFLNPSYENLLKSILKYREFSKLISTYTSKLSDYIDRSTGRIHTQFKQTG-TAT 529 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P+ G +RS ++ G + Sbjct: 530 GRLSSVNPNLQNIPQ------------------------KGELGSEIRSAFVSKEGYSFL 565 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE R+LA I+ ++ AF DI+ T K F +++++ R I K + Sbjct: 566 SIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAVNF 625 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 GL S Sbjct: 626 --------------GIIYGLSPYGLS------------------------------RDVG 641 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + ++ K + + V + K++ + ++ Sbjct: 642 IPQSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTTILN------------------ 683 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R D+K NT + R + +Q + DI+ M + Sbjct: 684 --------RPRFIPDIKSAN---NTIKQRAERIAI------NSPIQGSAADIIKLAMIKS 726 Query: 618 TK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEA 670 K ++L VHDE+V E D + +M +PLK + Sbjct: 727 DKYLKRMQIDGKLILQVHDELVFEINDKYIDKTSKDIKVIMENIYP--LKVPLKVNLGIS 784 Query: 671 KR 672 K Sbjct: 785 KN 786 >gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 856 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 84/566 (14%), Positives = 158/566 (27%), Gaps = 133/566 (23%) Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + +EG A I + K +A LF Y K E L Sbjct: 398 YYLLHPDKSSSKEGLAEIKKMLKS---------EEGLDKEALSLFDLYGKISSEMDEALH 448 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + + + L ++ + +G R+DLD + K+++ + + + I + G + Sbjct: 449 GLMYRI---DIPLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASI-DMAAGYKVN 504 Query: 235 SRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQLAKDLILNRLASSGS 287 + LF G+ ++ ++ L+ + L L+L+ + Sbjct: 505 LNSPKQVGWLLFDHLGLPVIKKTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHRELTKM 564 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L +A+ T + ++ TGR S QNLP Sbjct: 565 LTGFVQPLIDAIDPKTGKVHTTFEHTSTGTGRLSSRDPNLQNLP---------------- 608 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 G + ++ + + AD + IE RVLA I+G+ +AF G Sbjct: 609 --------AYGDWAMKLKEAFVPDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGR 660 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T A F +KVS E R + G+ + Sbjct: 661 DIHAETAAWIFGVDTEKVSPELRRMA--------------KMINFGLLYGMTPYGLASR- 705 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + + V + E Sbjct: 706 -----------------------------LNIGREEAKTIIDRYFSAFPKVGDYIEKSYE 736 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR N + + +T+ Sbjct: 737 EARKRGYTLSLFGRRRPLNEVT-----------------------------TVVGNSTAA 767 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 L R +Q+ + DI M + ++L +HD ++ E Sbjct: 768 LKRVAI------NTPIQSTAADITKIAMIRLDEALQRENIDAALILQIHDSLICECSAKD 821 Query: 641 YFSVGTL-CSLMTKNPSWAKGLPLKA 665 V + M +PL+ Sbjct: 822 EEVVSGILKESMESAVE--LSVPLEV 845 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 67/550 (12%), Positives = 136/550 (24%), Gaps = 112/550 (20%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + + A L Y + L E L + Sbjct: 416 TYLPSVNAAEAAREGALGAAWCAVLLEKIYPVLKERLEEQQLLSLYET--MEFPLVEVLA 473 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G +D + + I+ + L +I L G + L LF + Sbjct: 474 AMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEF-NINSPKQLSAVLFERLDLQ 532 Query: 253 LV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRL 305 T +L + IL+ + L+++ +S R+ Sbjct: 533 PPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFWTKLQSTYLDSMEGLISPRTKRI 592 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 593 HTSFNQTV-TATGRLSSSEPNLQNIP------------------------VRTEEGRQIR 627 Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + S+G L+ AD + IE R+LA ++ + ++AF +G+DI+ T ++ F P++ V Sbjct: 628 ALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAV 687 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + + R K + + Y L + + S F + Sbjct: 688 TTDLRRKAKAVNFGIVYG-----ISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDG 742 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + ++ + + G +L + + + + Sbjct: 743 VVEKAHKDGFVTTIFGRRRDL---------PAIKSSNYNQRTLAERMAMNTPIQGSAADI 793 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 +L + Sbjct: 794 I---------------------KLAMIKTHRALQEGGFKSRI------------------ 814 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 + +VL E V L M +PL Sbjct: 815 ---------LLQVHDE---LVL--------EIMQNEKEQVAELVRDAMENIVQ--LSVPL 852 Query: 664 KAEGYEAKRY 673 + + + + Sbjct: 853 SVDIHTGENW 862 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 67/550 (12%), Positives = 136/550 (24%), Gaps = 112/550 (20%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + + A L Y + L E L + Sbjct: 417 TYLPSVNAAEAAREGALGAAWCAVLLEKIYPVLKERLEEQQLLSLYET--MEFPLVEVLA 474 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G +D + + I+ + L +I L G + L LF + Sbjct: 475 AMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEF-NINSPKQLSAVLFERLDLQ 533 Query: 253 LV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRL 305 T +L + IL+ + L+++ +S R+ Sbjct: 534 PPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFWTKLQSTYLDSMEGLISPRTKRI 593 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 594 HTSFNQTV-TATGRLSSSEPNLQNIP------------------------VRTEEGRQIR 628 Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + S+G L+ AD + IE R+LA ++ + ++AF +G+DI+ T ++ F P++ V Sbjct: 629 ALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAV 688 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + + R K + + Y L + + S F + Sbjct: 689 TTDLRRKAKAVNFGIVYG-----ISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDG 743 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + ++ + + G +L + + + + Sbjct: 744 VVEKAHKDGFVTTIFGRRRDL---------PAIKSSNYNQRTLAERMAMNTPIQGSAADI 794 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 +L + Sbjct: 795 I---------------------KLAMIKTHRALQEGGFKSRI------------------ 815 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 + +VL E V L M +PL Sbjct: 816 ---------LLQVHDE---LVL--------EIMQNEKEQVAELVRDAMENIVQ--LSVPL 853 Query: 664 KAEGYEAKRY 673 + + + + Sbjct: 854 SVDIHTGENW 863 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 83/666 (12%), Positives = 179/666 (26%), Gaps = 148/666 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERI---LFKKTL 84 + A++ D+ T++ + D +L ++ ++ + + Sbjct: 334 LVGFAWSCGDQ----LYATDKLELLQDPIFKDFLEKTSLRV------YDFKKVKVLLQRF 383 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+ + + L + ++ +L + ++ Sbjct: 384 GVDLQAPAFD---------------IRLAKYLLSTVEDNEIATIASLYGQTYLVDDETFY 428 Query: 145 YDCTRANHVQA---WQLFGEYCKRDVEATRELFKRLIPL------SDGERDLWLLDQTIN 195 + + + VE L ++L D E+ L + + Sbjct: 429 GKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKME 488 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--- 252 G + + +L++Q +KL ++I +L + L + LF G+ Sbjct: 489 IAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEY 547 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L IL+ + + L + + +DG++ Sbjct: 548 TKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 608 Q-DLTQTGRLSSVDPNLQNIP------------------------ARLEQGRLIRKAFVP 642 Query: 371 S-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQ 428 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ Sbjct: 643 EWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTAND 702 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + + Y L + + + FE + +++ + + Sbjct: 703 RRNAKAVNFGVVYG-----ISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVRE 757 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + L EL + ++ + Sbjct: 758 ARDKGYVETLFKRRREL---------PDINSRNFNIRGFAEATAINSPIQGSAADI---- 804 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 ++ + T Sbjct: 805 -----------------LKIAMIQLDKALVAGGYQTK----------------------- 824 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEG 667 + IVL V P + + L M + +PL A+ Sbjct: 825 ----MLLQVHDE---IVLEV--------PKSELVEMKKLVKQTMEEAIQ--LSVPLIADE 867 Query: 668 YEAKRY 673 E + Sbjct: 868 NEGATW 873 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 64/415 (15%), Positives = 117/415 (28%), Gaps = 113/415 (27%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 + + +++ S + L + V+S GR+ + + TGR S Sbjct: 2 EELSYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAV-TATGRLSSSD 60 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R IA G +V AD + I Sbjct: 61 PNLQNIP------------------------IRNEEGRRIRQAFIAREGYSIVAADYSQI 96 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A ++G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 97 ELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINF------- 149 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ + + + + Sbjct: 150 -------GLIYGMS------------------------------AFGLSRQLGISRPDAQ 172 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + ++ V Q D+ + Sbjct: 173 KYMDLYFQRYPSVQQFMTDIRAKAKAQGY--------------------------VETLF 206 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RRL D+ + R +Q + DI+ M + Sbjct: 207 GRRLYLPDINSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRHD 257 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++++ VHDE+V E + M +PL E K + Sbjct: 258 PDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAELV--VPLIVEVGVGKNW 310 >gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 198/370 (53%), Gaps = 9/370 (2%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+D Sbjct: 62 QHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359 GRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y YA Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 242 RAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGV 301 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360 Query: 535 GGSISARRVA 544 G R Sbjct: 361 PGIAFKCRKL 370 >gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 894 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 87/665 (13%), Positives = 168/665 (25%), Gaps = 132/665 (19%) Query: 19 VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI 78 +G+ + A E A + ++L + + ++ + Sbjct: 347 LGLTVETQDGRPVGFGLA-SATEAVTLPWQEGRADYAPFERWLASDA-PKIMSDAKLQVK 404 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARF 135 ++ G+++ + V +L + Sbjct: 405 AMRRA-GLEVQGLAF-DVLVAGWLLRPGFTDKTLAALVSRYLMEDLPEPD---------- 452 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + P V+AW L + D E L+ + Sbjct: 453 ---ANQLVPETEALTAPVEAWYTLRVEHALREVLDER---TLGVMVDIEMPTLLVLVEME 506 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV- 254 RG D + +L + + L + I + L+ LF G+ Sbjct: 507 LRGVATDRAGLAELSAQLQERITDLAQRAFAEIGKEI-NLGSPKQLQEVLFDQLGMPKTR 565 Query: 255 --DMSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T L+ DL+L +S + TL + D R+ T Sbjct: 566 ANKTGFSTDAGALADLQASNPHPFLDLLLEHRDASKLR-QIIQTLERGIGDDERIHTTYV 624 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +RS I Sbjct: 625 -QTGTTTGRISSNDPNLQNIP------------------------VRTEEGRRIRSAIRV 659 Query: 371 SNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G L+ AD + IE R++A ++G+ I+AFA GED++ ++ F VS E R Sbjct: 660 GEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPADVSAEMR 719 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K M L Y L + T F + + + ++ Sbjct: 720 TKVKAMSYGLAYG-----LSAFGLSKQLRIPSSEAKQLMTDYFARFGAVRDYLRQVVEEA 774 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + G + + L + + Sbjct: 775 RAAGYTETIFGRRRP---------FPDLNSPNRVLRDNAERAALNAPIQGSAADI----- 820 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 ++ ++ D RD+ Sbjct: 821 ----------------MKIAMIRIEADMRE---------------------------RDM 837 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 + HDE++ E + ++ + M +PL+ + Sbjct: 838 ASRMLLQV-----------HDELILEVAAGEWDALEAIVTDRMAHAAD--LRVPLEVQVG 884 Query: 669 EAKRY 673 + Sbjct: 885 RGDSW 889 >gi|39545749|emb|CAE04166.3| OSJNBb0034I13.15 [Oryza sativa Japonica Group] Length = 1000 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 94/773 (12%), Positives = 191/773 (24%), Gaps = 165/773 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E V + + + + +W D + + Sbjct: 285 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 340 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 341 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 397 Query: 107 SSLKNACLAL-----------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ + K G I + + + Sbjct: 398 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDG-SAGKIISMEPVEVLQRDD 456 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGER----------------DLWL----LDQTIN 195 +++ Y D +T L++ L + + + W L + Sbjct: 457 REMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKME 516 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLFL--- 247 G +D + +++++ +RK + K D + +R F Sbjct: 517 TAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIE 576 Query: 248 ---ITGIDLVDM--------------SEGT-----------LKSILSHS--NITQLAKDL 277 G L + T ++ + + + Sbjct: 577 NRCKPGETLPKSRTIKVPNDGSLIAEGKKTPKYCTIELFSIVEDLKTDLFTASGWPSVSG 636 Query: 278 ILNRLASSGS-----AILKLNTLSEAVSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLP 331 R + ++ S+ + + G + Sbjct: 637 DALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACH 696 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDC--VRSCIIASNGKKLVVADLAGIEARVL 389 EI + N + + L D +R +A+ G L+VAD +E R+L Sbjct: 697 AIAALCEICSIDSLISNFILPLQNQPALEKDRYKIRQAFVAAPGNSLIVADYGQLELRIL 756 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A +A + AF G D + T + D V + KV Sbjct: 757 AHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKVLL 798 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 G + + + + + A K+ + K Sbjct: 799 EWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKL 858 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 W + VL E + + R Sbjct: 859 WYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRSRR 892 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYD 623 + ++ S R VQ + D+ M + G+ Sbjct: 893 FPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELGWR 943 Query: 624 IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E P ++ M+K + + L + A+ + Sbjct: 944 LLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 996 >gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 199/370 (53%), Gaps = 9/370 (2%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+D Sbjct: 62 QHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359 GRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y YA Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 242 RAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGV 301 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360 Query: 535 GGSISARRVA 544 G R Sbjct: 361 PGIAFKCRKL 370 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 91/590 (15%), Positives = 159/590 (26%), Gaps = 127/590 (21%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK-GSIDSPPYDCTRANH 152 T++ K L + +D P + Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQR-------HLQKQLPQSDGQLSLLDDSPSEPLLIEA 462 Query: 153 VQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + +L + EL+ L E L + + D G +D + + + Sbjct: 463 MAVLELVPRLTDELSDIESLELYTDL------EIPLITILAAMEDTGIAVDTHTLEEQLD 516 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SIL 265 + +E L + L++ LF + ++ T L Sbjct: 517 GFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEAL 576 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + L+ +R S + L L +V DGR+ T + AS TGR S Sbjct: 577 AKKTDHPFLQHLLAHREYSKMKST--LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDP 633 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384 QN+P A +RS + G L+ AD + I Sbjct: 634 NLQNIP------------------------VRTDAGKKIRSAFVVGEGFETLLTADYSQI 669 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RV+A ++ + I+A+ +GED++ +K F+ ID+V+ E R K M L Y Sbjct: 670 EMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYG-- 727 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + LD+ Q S FE + +++ + D+ + L G Sbjct: 728 ---LSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGR--- 781 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + + E +V Sbjct: 782 ------RRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVN----------- 824 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 RRL + + + Sbjct: 825 -RRLDSLKSRV--------------------------------------LLQVHDE---L 842 Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VL E V + M S +PL+ + Sbjct: 843 VL--------EVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882 >gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 911 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 96/686 (13%), Positives = 179/686 (26%), Gaps = 143/686 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58 D E S L + + I + + D ++ S Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTN 377 Query: 59 ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ L K + S V + + + Sbjct: 378 SLFEEFLNNPNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-VSDLSS 436 Query: 115 ALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + GK + Y +A L +Y + +E Sbjct: 437 QIKLVDNLVELETIDEIFGKGVKKNPDIDLDIKSKYISKKAY------LLKKYSDQLIE- 489 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + + L + I +G ID + + + I ++ ++ + L Sbjct: 490 QLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVA 549 Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 I ++ ++ LF + ++ T K +L +L+L + Sbjct: 550 EEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHRKYTK 608 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + + D ++ + + TGR S QN+ Sbjct: 609 LYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI---------------- 651 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 VR I +N K + D + IE RVLA ++ E I AF Sbjct: 652 --------SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNA 703 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI++ FN D+++ EQR I KV GL Sbjct: 704 DIHLQAAKLIFNLSDDQITSEQRRIAKVF--------------NFGILYGLTDF------ 743 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + + K + + +L + E Sbjct: 744 ------------------------GLASDLNISVNQAKQMIKDYYSAFPSLLDFKEKQVE 779 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 I S+RR +++ + + Sbjct: 780 IATSQGY--------------------------ITTLSNRRRYINELNSTNHNIRQFGKR 813 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 + +Q + DIL M + K IV +HDEI+ E D Sbjct: 814 I---------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQ 864 Query: 641 YFSVGTL-CSLMTKNPS-WAKGLPLK 664 + + L LK Sbjct: 865 LEQTKKIVVHELENALEKLFLDLNLK 890 >gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] Length = 932 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 84/653 (12%), Positives = 173/653 (26%), Gaps = 144/653 (22%) Query: 53 MPSDLLQYLRD-------ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P +L + + +++ R G ++ +L Sbjct: 389 VPDELTPQMENLLCNALAGDRKKTVYDAKSLRHALHAH-GWEMHG-AVTDIKMLDYLVNP 446 Query: 106 PSSLKNAC----LALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 + L + + K + +D + ++ Sbjct: 447 DGNRTKFAGVTKRLLGWEIDEKPSDISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIY 506 Query: 160 GEYCKRDVEATRELFKRLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Y ++ T E + + E L + + + G ID + + + + E Sbjct: 507 A-YALLQMQPTLEQLAHFRQVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSE 565 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSN 269 + + + L+ LF + L+ + ++ Sbjct: 566 VAMAQQSAFDSIGREV-NLSSPKQLQEVLFTQLQLPKTKKTKTGYTTDAKALEELARYNP 624 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L + L+ +R I + L E V+ DGR+ T A TGR S QN Sbjct: 625 HPFL-EALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVA-ATGRLSSIDPNLQN 680 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARV 388 +P + +R + L+ AD + IE R+ Sbjct: 681 IP------------------------ARTVDGQKIREAFVPQKPYTALMTADYSQIEMRI 716 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A ++G++ + AFA+GED++ + A + D+V+ QR+ K L Sbjct: 717 MAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGL--------- 767 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 GL + + + + Sbjct: 768 -----AYGLSAYGLAAQ------------------------------LNISQRDAKQLMD 792 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + V + + V RR Sbjct: 793 TYFERFGKVREYLNQIVATATRVGYTETMQ--------------------------GRRR 826 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGY 622 +++ + + +Q + D++ M Sbjct: 827 YLPELRSTNRNVADNARRA---------ALNAPIQGSAADLMKAAMLQVDADLRQEQLQS 877 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + L MT +PL+ +R Sbjct: 878 RVLLQVHDELVLEVAPGETERLEALVRQAMTGVAK--LRVPLEVSVGIGPNWR 928 >gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 284 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 17/284 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + + ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 T + L +L G+D+ ++ + T++ L + Sbjct: 239 TGLE--NPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGK 280 >gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] Length = 844 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 71/520 (13%), Positives = 144/520 (27%), Gaps = 122/520 (23%) Query: 161 EYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + + L+ + PL D + L + + RG +D + L + ++ Sbjct: 419 PFALLETLCEEPLWPSVAPLVRDLDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRE 478 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSNITQ 272 L+ + + + + + LF G+ + ++ L+ + + Sbjct: 479 LEALVRAEAGEEV-NLQSPKQMAALLFERLGLPPLKKTKTGFSTDVGVLEELAKLPDPLS 537 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L + + + DG + A+ TGR S QNLP Sbjct: 538 RVPRHLLEHREVAKLRTGFVQPFLKQAHRDGGHIYSTFEQTATGTGRLSSRDPNVQNLP- 596 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391 G ++ R C++ S + + AD + IE RVLA Sbjct: 597 -----------------------VFGEWAEAFRRCLVPTSPKDRFLSADYSQIELRVLAH 633 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + GE ++AF G DI+ T + + ++VS EQ Sbjct: 634 LCGEPRLVQAFEAGRDIHRETASWVYGVAAEEVSAEQ----------------------- 670 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + + L A + + + + Sbjct: 671 ---------------------RRFAKVVNFGLLYGMSAHGLAQRMGVGRPEAAQIIDRYF 709 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + V + ++ R V R + Sbjct: 710 SVLPRVREYLEETVREAKARGYTVSLFGRVRPLGEVSTVEGRGGGALD------------ 757 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 + +Q+ + DI M + + +V Sbjct: 758 -----------------------RVAVNSPIQSTAADIAKVAMVDLERRLRGSGLPVRLV 794 Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664 L VHD +V + P +L +M + + +PL+ Sbjct: 795 LQVHDSLVCQVPQEALEEAASLLRDVMERAVT--LSVPLE 832 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 91/590 (15%), Positives = 159/590 (26%), Gaps = 127/590 (21%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK-GSIDSPPYDCTRANH 152 T++ K L + +D P + Sbjct: 410 HDTAIAGYLLRPGQRTYEIADVYQR-------HLQKQLPQSDGQLSLLDDSPSEPLLIEA 462 Query: 153 VQAWQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + +L + EL+ L E L + + D G +D + + + Sbjct: 463 MAVLELVPRLTDELSDIESLELYTDL------EIPLITILAAMEDTGIAVDTHTLEEQLD 516 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK---SIL 265 + +E L + L++ LF + ++ T L Sbjct: 517 GFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEAL 576 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + L+ +R S + L L +V DGR+ T + AS TGR S Sbjct: 577 AKKTDHPFLQHLLAHREYSKMKST--LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDP 633 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGI 384 QN+P A +RS + G L+ AD + I Sbjct: 634 NLQNIP------------------------VRTDAGKKIRSAFVVGEGFETLLTADYSQI 669 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RV+A ++ + I+A+ +GED++ +K F+ ID+V+ E R K M L Y Sbjct: 670 EMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYG-- 727 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + LD+ Q S FE + +++ + D+ + L G Sbjct: 728 ---LSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGR--- 781 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 R + + E +V Sbjct: 782 ------RRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVN----------- 824 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 RRL + + + Sbjct: 825 -RRLDSLKSRV--------------------------------------LLQVHDE---L 842 Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VL E V + M S +PL+ + Sbjct: 843 VL--------EVAPGELEEVSRIVSEEMDGAIS--LRVPLEVSTGHGTNW 882 >gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2] gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2] gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 198/370 (53%), Gaps = 9/370 (2%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALL 61 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+D Sbjct: 62 QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359 GRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y YA Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYA 241 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 242 RAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGV 301 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 302 KREAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360 Query: 535 GGSISARRVA 544 G R Sbjct: 361 PGIAFKCRKL 370 >gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 202/370 (54%), Gaps = 9/370 (2%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+D Sbjct: 62 QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359 GRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ ++ Y YA Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYA 241 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 242 RAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGV 301 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 +A S + ++ + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 302 KREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360 Query: 535 GGSISARRVA 544 G R Sbjct: 361 PGIAFKCRKL 370 >gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] Length = 682 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 113/678 (16%), Positives = 192/678 (28%), Gaps = 163/678 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D+ET G+ + ++ + + + L D L Sbjct: 150 LGLDLETT--------GLDPHQDRPRLLSLS---TERDTYLVDLFALPHALEALRPLFEA 198 Query: 64 ETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 +T V HN F+ K G+ +R CT + + S + Sbjct: 199 KTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMPALA--------- 248 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 L R P + A + Q+ + E +R L + + + Sbjct: 249 --DLV-PGLDKRLQTSDWSGPISEAQLAYAARDTQVLLPLYHQQQEESRRLG--IGKVLE 303 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + G + + L + ++ + + + + Sbjct: 304 IESRALPAVAWMGLMGVPFNPERWLATAKEAELSAQEALKRLDWR-----TNWDSPKQVL 358 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 L GI+L D E T LS L+ R + L Sbjct: 359 EALR-RAGIELSDTREET----LSRHREHPTVAALLAYREHRKRQSTYGAAWLENLHPLT 413 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + Q GA GR S Q +PR+ Sbjct: 414 GRIHPSWQQIGAES-GRMSCSRPNLQQVPREPAY-------------------------- 446 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 R+C A G+ L+ AD + IE R+ A IAGE ++AF GED++ T Sbjct: 447 --RACFQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTLTARLVTGKA-- 502 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 + S+E R + K + L Y G++ +T A Sbjct: 503 EPSREDRQLAKALNFGLLYGMGSEGLRTYARAN--------------------------- 535 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 +L E +++A+ + G+ + Sbjct: 536 -----------YGLELSPQEAEALREAFFRAYPGLRAWHR-------------------- 564 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + + +V + + RR V Y KL V Sbjct: 565 ---------HQPEGEVEVRTLAGRRRVTGR--------------------YTEKL-NTPV 594 Query: 603 QAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656 Q D L + ++ G VL VHDEIV E P + L M + Sbjct: 595 QGSGADGLKLTLALLYESRQKAPGCFPVLAVHDEIVIEAPADGVSAAYAWLTRSMREGME 654 Query: 657 WAK-GLPLKAEGYEAKRY 673 +P+ E + + Sbjct: 655 AILTKVPVLVEVGVCEDW 672 >gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] gi|6015000|sp|O67779|DPO1_AQUAE RecName: Full=DNA polymerase I; Short=POL I gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus VF5] Length = 574 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 99/693 (14%), Positives = 188/693 (27%), Gaps = 163/693 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L++D ET I L D+E + D E + L + + Sbjct: 24 YLYLDTETTGD---------------RIRLVQIG-DEENTYVIDLYEIQDI-EPLRKLIN 66 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKN-ACLALNFSE 120 + + V HN F+ + I T + + G SL + L +S Sbjct: 67 ERGI--VGHNLKFDLKYLYRY---GIFPSATFDTMIASYLLGYERHSLNHIVSNLLGYSM 121 Query: 121 HLT-------KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + A + I + + T ++ Sbjct: 122 DKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTR-TAKI 180 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 F P++ E + G+ +D++ + + + +E + I + Sbjct: 181 FDLKSPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERET---QKRIQEFYIKYRV 237 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L L ++L + T L+ + K ++ R Sbjct: 238 DPLSPKQLASLLTKKFKLNLPKTPKGNVSTDDKALTSYQDVEPVKLVLEIRKL--KKIAD 295 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL L E + +GR+ + GA TGR S QN+ R Sbjct: 296 KLKELKEHL-KNGRVYPEFKQIGA-VTGRMSSAHPNIQNIHRD----------------- 336 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R A G V++D + IE R+ A + + AF G+D++ Sbjct: 337 -------------MRGIFKAEEGNTFVISDFSQIELRIAAEYVKDPLMLDAFKKGKDMHR 383 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + ++++KE+R + K + L Y AK A Sbjct: 384 YTASVVLGKKEEEITKEERQLAKAINFGLIYGISAKGLAEYA------------------ 425 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + ++ +++++ + + + + + Sbjct: 426 --------------------KLGYGVEISLEEAQVLRERFFKNFKAFKEWHDRVKKELKE 465 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + G R + Sbjct: 466 KGEVKGHTLLGRRFSANTFND--------------------------------------- 486 Query: 591 RTYGGKLTENIVQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSV 644 +Q D+L + N K G +V VHDEIV E V Sbjct: 487 ------AVNYPIQGTGADLLKLAVLLFDANLQKKGIDAKLVNLVHDEIVVECEKEKAEEV 540 Query: 645 GTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYRK 675 + M +P++ E +R+ K Sbjct: 541 KEILEKSMKTAGKIILKEVPVEVESVINERWTK 573 >gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T] Length = 714 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 143/660 (21%), Positives = 241/660 (36%), Gaps = 127/660 (19%) Query: 5 FIDIETRSP---------------------QPLPKVGVWAYAEQA--VITLCAYAWDDEP 41 D ET S + VG YAE I Y D Sbjct: 36 SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95 Query: 42 V--KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER----ILFKKTLGID-IPSKRWI 94 P+DL++++ + A N FE ++ K G + ++ Sbjct: 96 GRRAYIP---GGPKPTDLIEHIANGG-PIAAWNITFEFWIWNMVLAKREGWPWLQLEQCY 151 Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY---DCTRAN 151 C AR LP SL A AL K ++GK LI + C+ + T Sbjct: 152 CDMAKARRFSLPGSLDAAAQALK---TSPKDKKGKQLINKLCRPVSATKARPLPRWTLYT 208 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Q + YC +DV++ + ++ ER+ WL DQ IN RG ++D++ + + Sbjct: 209 APQDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALD 268 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 ++ Q ++ ++ +T+G + S + + +L G + +++ ++ L ++ Sbjct: 269 IVDQTTRRFTMELAAITNGAVGSVSEVAKMTDFLAG-LGCRMHNLTADSVSEALERDDLN 327 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 A+ ++ R A +G+ + KL +L +SSDGRLR F+GA TGRWS Q QNL Sbjct: 328 PTARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLT 386 Query: 332 RQERSEEILTQTIQALNRGETI-------------------------------------- 353 + + + + + TI Sbjct: 387 SKGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHR 446 Query: 354 ---------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 DP+ L S C+R IA+ GKK V D + IEA VLA +A +W+++ F Sbjct: 447 NLDLIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRT 506 Query: 405 GEDIYVTTYAKAFNTPID----------KVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 IY + +K P + ++++GKV ELA GY G +K + Sbjct: 507 HGKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGA- 565 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + F D ++ + L +D PE + + W ++ Sbjct: 566 --------------EAHFADDDEMKKAILGWRDASPEIVEFWGGQYRR-DPFTRKWTKEY 610 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 G L + G + V + H ++ LPS R L Y + Sbjct: 611 FG-------LEGAAIMAILNPG-----KCYAVHDITYAVHDDVLYCRLPSGRFLQYHQPR 658 >gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] Length = 586 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 100/697 (14%), Positives = 185/697 (26%), Gaps = 158/697 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSDLLQY 60 L++D E + K I L D+E + D + + + Sbjct: 23 YLYLDTE-----VMIKDFENIDFFNDKIRLIQIG-DEENTFVIDLLKINPEVVKNHIQNL 76 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLA 115 + ++ + + HN F+ K ++I K T + ++ SL + Sbjct: 77 IENKGI--IGHNLKFDLKFLK--TNLNILPKIVFDTMIASQILAKGDNSQRHSLSASAKR 132 Query: 116 ---LNFSEHLTKM-----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L+ + K + I K N + L + Sbjct: 133 FVSLDVDKTYQKSPWWAKDLSPEQIEYAAKDIDALRHLFKEEKNQLNQDNLHKKASGE-- 190 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T ++F + P++ E I G ID + KL + Q+ + D +K Sbjct: 191 --TFKVFGVINPVAALEMAFLPALVEIELSGIPIDEEEAKKL---LKQKELEFQADYMKF 245 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + YL I L + + L + + L+ R Sbjct: 246 KIKTGADPFSPLQVVNYLTNKLKIKLPKTEKGSFSSQDVFLKDYEDIEEVRLLLKLR--- 302 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + I+ + + R+ G + GA TGR S QN+P+ Sbjct: 303 ADKKIIDKIKEILQFTRNKRVYGEFKQIGA-ATGRMSSLRPNLQNIPKN----------- 350 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ G K +VAD + IE R+ A ++ I AF Sbjct: 351 -------------------LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNE 391 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G+D++ T + D+++KE+R + K + L Y K A Sbjct: 392 GKDLHKLTASIITGKSYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKAN--------- 442 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + ++ + Sbjct: 443 -----------------------------YGVSINLQEAKKFHENYFKFYKSFKDWHDRV 473 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E R + R+L Sbjct: 474 KEHLDK------------------------HRFTTLETLLGRKL---------------- 493 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP 640 +Q D+L + +V VHDEI+ E Sbjct: 494 -----IAYKFTDAVNYPIQGSGSDLLKMAVVFFFKERNDLDAKVVNLVHDEILVEVAAND 548 Query: 641 YFSVGTLC-SLMTKNPSWAK-GLPLKAEGYEAKRYRK 675 + S M K +P+ E + + K Sbjct: 549 IEKAKEVLSSSMEKAGKLILKDVPVAFEMVVSDSWSK 585 >gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens] gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens] gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens] gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens] gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens] gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct] gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct] Length = 900 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 83/636 (13%), Positives = 168/636 (26%), Gaps = 139/636 (21%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G D K + A S ++ Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + +Y + T EL Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K L+ K+L+++ G Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478 Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + + + T +++L+ +IL Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L A G + T G + TGR S Q + + Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ TI+ R+ ++S G + AD + IE R+L ++G+ +K F Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQE 647 Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 E + T ++ + P+++V+ R K + A+ Y G + Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + +++ K++ + Sbjct: 697 ---------------------------------LGVPIQEAAQFLESFLQKYKKIKDF-- 721 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + +V RR + Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635 +Q R+ +VQ + D+ M + +V +HDE++ E Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808 Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665 D L M + +PLK Sbjct: 809 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844 >gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens] Length = 900 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 83/636 (13%), Positives = 168/636 (26%), Gaps = 139/636 (21%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G D K + A S ++ Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + +Y + T EL Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K L+ K+L+++ G Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478 Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + + + T +++L+ +IL Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L A G + T G + TGR S Q + + Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ TI+ R+ ++S G + AD + IE R+L ++G+ +K F Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQE 647 Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 E + T ++ + P+++V+ R K + A+ Y G + Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + +++ K++ + Sbjct: 697 ---------------------------------LGVPIQEAAQFLESFLQKYKKIKDF-- 721 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + +V RR + Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635 +Q R+ +VQ + D+ M + +V +HDE++ E Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808 Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665 D L M + +PLK Sbjct: 809 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844 >gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2] gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2] gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 200/370 (54%), Gaps = 9/370 (2%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 2 DETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALL 61 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+D Sbjct: 62 QHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSAD 121 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGL 359 GRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 122 GRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQL 181 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYA 414 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ ++ Y YA Sbjct: 182 TSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYA 241 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 242 RAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGV 301 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 +A S + + + + +K+ C+ +K+ WR H + W D+ + +Q Sbjct: 302 KREATSWYQKSVETDKTYGLSEKIFVN-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQS 360 Query: 535 GGSISARRVA 544 G R Sbjct: 361 PGIAFKCRKL 370 >gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] Length = 736 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 46/393 (11%), Positives = 100/393 (25%), Gaps = 60/393 (15%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET + P+ A + +++ + + + Sbjct: 346 AFDTETTALDPMV----------ARLVGLSFSVEPGKAAYLPVAHRGPDMPEQLPLDEVL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 + L +L V + ++ + GI++ T + + + + Sbjct: 396 ARLKPWLESADRRKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSL 453 Query: 113 C-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + GK A EY D + T Sbjct: 454 ALRHLGIKTIKYEDVAGKGAKQIG---------------FDEVALAQAAEYAAEDADITL 498 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P + E + + + + G ID L+ IA +L Sbjct: 499 QLHRALYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEIATRLIEL 558 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSILSHSNITQLAKD 276 + +L G + + F + + T + +L Sbjct: 559 EAQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKLAEDYPLPK 617 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR--Q 333 L+L S + + V GR+ R+ S + R Sbjct: 618 LLLEHRGLSKLKSTYTDKMPRMVIPATGRVHTNYAQAVR-RSRAASHRTIRIFRTFRCEP 676 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 ++ ++++ G + R+ Sbjct: 677 RKAGGSARRSLRRPATGSCRPTIRRSSCGSWRT 709 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 92/659 (13%), Positives = 173/659 (26%), Gaps = 124/659 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTLGI 86 +T A A D T + L + H + + G Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418 Query: 87 DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + T++ A +L + L E + D+ Sbjct: 419 TLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEE---SGQQQLSLLDDEDAA 474 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + +++ + D E L+ D E L + + G +D Sbjct: 475 DAEAAEGEILRSRAVLDLAAALDTELADIEATGLLA--DMELPLLEVLANLESTGIAVDT 532 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------- 256 + LQ A + + G + L++ LF + Sbjct: 533 THLHDLQSAFAARVAE-AAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTT 591 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 L+S+ + L +L ++ + ++ L + V+ DGR+ T A Sbjct: 592 DADALQSLFEKTQHPFLEH--LLEHRDATRLKVT-VDGLLKTVAEDGRIHTTFNQTVA-A 647 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P A +R + G Sbjct: 648 TGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVVGEGYET 683 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G+ I+AF GED++ ++AF PI++V+ E R K M Sbjct: 684 LLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAM 743 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y L + + + F + + + +Q + Sbjct: 744 SYGLAYG-----LSAFGLAAQLKISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYT 798 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + L G R + + E ++ + Sbjct: 799 ETLFGR---------RRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMIDVQ-- 847 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R L + ++ + Sbjct: 848 ----------RALREA--------------------------------GLAS----RMLL 861 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL E V L M +PL+ + + Sbjct: 862 QVHDE---LVL--------EVAAGERERVEQLVREKMAAAID--LSVPLEVSVGTGRSW 907 >gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 932 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 83/627 (13%), Positives = 168/627 (26%), Gaps = 139/627 (22%) Query: 75 FERILFKKTL---GIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEE 127 ++ + L G ++ +L + L + + Sbjct: 414 YDAKSLRHALHAHGWELHG-AVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDEKPSDI 472 Query: 128 GK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---SD 182 K + +D + ++ Y ++ T E + + Sbjct: 473 SKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYA-YALLQMQPTLEQLAHFRQVDGLLE 531 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + + G ID + + + + E + + + L+ Sbjct: 532 LENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREV-NLSSPKQLQ 590 Query: 243 MYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 LF + L+ + ++ L + L+ +R I + L Sbjct: 591 EVLFTQLELPKTKKTKTGYTTDAKALEELARYNPHPFL-EALLYHRDRIKLLQI--VRNL 647 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 E V+ DGR+ T A TGR S QN+P Sbjct: 648 RERVADDGRIHTTFGQTVA-ATGRLSSIDPNLQNIP------------------------ 682 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 + +R + L+ AD + IE R++A ++G++ + AFA+GED++ + A Sbjct: 683 ARTVDGQKIREAFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAA 742 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + D+V+ QR+ K L GL + Sbjct: 743 LVYGVQPDEVTPTQRSHVKATSYGL--------------AYGLSAYGLAAQ--------- 779 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + + + V + + V Sbjct: 780 ---------------------LNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYT 818 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 RR +++ + + Sbjct: 819 ETM--------------------------RGRRRYLPELRSTNRNVADNARRA------- 845 Query: 595 GKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M ++L VHDE+V E + TL Sbjct: 846 --ALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGETERLETLV 903 Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRYR 674 MT +PL+ +R Sbjct: 904 RQAMTGVAK--LRVPLEVSVGIGPNWR 928 >gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches] gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches] Length = 608 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 98/679 (14%), Positives = 186/679 (27%), Gaps = 161/679 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D ET G+ Y + L + + D+ + L Sbjct: 37 FLGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALE 87 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112 V HN+ ++ +F++TLG+ + + T +LA SL++ Sbjct: 88 MVQ-GFVLHNAAYDLQVFERTLGVPMETMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDL 146 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K L+A K + + + + Y D Sbjct: 147 TRRY---IDSAVADNVKTLMADLAKANKTTKVNVWKKVPFEDP--HYQLYSGMDPILAAR 201 Query: 173 LFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L ++L PL + E L + + G+ +D++ +L + + +E + Sbjct: 202 LIQKLAPLVKVSDELVENEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIAL 261 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKSILSHSNITQLAKDL 277 + T + L G+ + + L ++ H + A + Sbjct: 262 NYGCEKV---NSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAV 317 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 I + ++ + S R + A RT R S Q LP + Sbjct: 318 IEA-KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD--- 372 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C +A G ++ D E RVLA ++ + Sbjct: 373 ------------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQR 408 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF + D+++ T AF I K E Sbjct: 409 MIQAFLDDADLHLMTARAAFGEHIQKDDPE------------------------------ 438 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + A + L + V + + V Sbjct: 439 ---------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEV 483 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 +L + L I RRL + Sbjct: 484 QKLSQRLQREAIRNGYITTP---------------------FIDGLGGRRLPVDPQR--- 519 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635 ++Q+ SRD+ C + G+ + L +HDEI++ Sbjct: 520 ----------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILAS 563 Query: 636 TPDTPYFS-VGTLCSLMTK 653 P + LM + Sbjct: 564 VPAEQAEWGANRIGELMAE 582 >gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 911 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 181/664 (27%), Gaps = 133/664 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58 D E S L + + I + + D ++ S Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377 Query: 59 ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ L K + S V + + + Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-VSDLSN 436 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++L ++E F KG +P D + + + + D + Sbjct: 437 QIKLVDNLIELETI---DQIFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQ 493 Query: 175 KRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L + I +G ID + + + I ++ ++ + L I Sbjct: 494 TNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEID 553 Query: 234 SS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 ++ ++ LF + ++ T K +L +L+L + Sbjct: 554 NNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHRKYTKLYTT 612 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L + + D ++ + + TGR S QN+ Sbjct: 613 YLKGFEKFIFDDSKVHTIFN-HTLTNTGRLSSSYPNIQNI-------------------- 651 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR I +N K + D + IE RVLA ++ E I AF DI++ Sbjct: 652 ----SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHL 707 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 FN D+++ EQR I KV GL Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVF--------------NFGILYGLTDF---------- 743 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A + + + K + + +L+ + E Sbjct: 744 --------------------GLASDLNISVNQAKQMIKDYYSAFPSLLEFKEKQVEIATS 783 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 I S+RR +++ + ++ Sbjct: 784 QGY--------------------------ITTLSNRRRYINELNSTNHNIRQFGKRI--- 814 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DIL M + K IV +HDEI+ E D Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQT 868 Query: 645 GTLC 648 + Sbjct: 869 KRIV 872 >gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes] gi|114592894|ref|XP_001147379.1| PREDICTED: polymerase (DNA directed) nu isoform 3 [Pan troglodytes] Length = 900 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 84/636 (13%), Positives = 169/636 (26%), Gaps = 139/636 (21%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G D K + A S ++ Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + +Y + T EL Sbjct: 372 YCEKSLTVKVNSTYGNSSRNIVNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLEL-- 429 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K L+ K+L+++ G Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478 Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + + + T +++L+ +IL Sbjct: 479 MSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L A G + T G + TGR S Q + + Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ TI+ R+ ++S G + AD + IE R+LA ++G+ +K F Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 647 Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 E + T ++ + P+++V+ R K + A+ Y G + Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + +++ K++ + Sbjct: 697 ---------------------------------LGVPVQEAAQFLESFLQKYKKIKDF-- 721 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + +V RR + Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635 +Q R+ +VQ + D+ M + +V +HDE++ E Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808 Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665 D L M + +PLK Sbjct: 809 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844 >gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515] Length = 316 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 59/416 (14%), Positives = 108/416 (25%), Gaps = 113/416 (27%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + D IL + L + + T ++TGR S Sbjct: 2 ESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDP 61 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGI 384 QN+P +R + G K+ AD + + Sbjct: 62 NLQNIP------------------------IRLEEGRKIRQVFVPSKPGWKMFSADYSQV 97 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA I+ ++ I AF + DI+ T F+ ++V R K + Sbjct: 98 ELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNF------- 150 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G+ SQN + + Sbjct: 151 -------GIVYGISDYGLSQN------------------------------LGITRKEAK 173 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + V + +D+ + RR + Sbjct: 174 DFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-------- 225 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 + + +NT +Q + DI+ + M Sbjct: 226 ---------FAERTAMNT------------------PIQGSAADIIKKAMILMSERLVSE 258 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 259 KLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 312 >gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] Length = 911 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 92/668 (13%), Positives = 181/668 (27%), Gaps = 141/668 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58 D E S L + + I + + D + S Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKVQQLSFFEDTTLSSTD 377 Query: 59 ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L ++ + ++ L K +PS V + + + Sbjct: 378 NLFEEFLNNKNLKKYTYDIKKTTYLLKNHQYNVLPSNFDFDFMVACYSLNANV-VSDLSN 436 Query: 115 ALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + ++ GK + Y +A ++ + + Sbjct: 437 QIKLVNQQEEIETNEIIFGKGVKKNPDIDIDIKSKYISKKAYLLKKYSD-KLIEQLKQTN 495 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T +L+ + L + I +G ID + + E I ++ ++ + + Sbjct: 496 TYDLY------LKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVA 549 Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 I ++ ++ LF + ++ T K +L +L+L + Sbjct: 550 EEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHRKYTK 608 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + + D ++ + + TGR S QN+ Sbjct: 609 LYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI---------------- 651 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 VR I +N K + D + IE RVLA ++ E IKAF Sbjct: 652 --------SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNA 703 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI++ FN ++++ EQR I KV GL + ++ Sbjct: 704 DIHLQAAKLIFNISDNQITSEQRRIAKVFN--------------FGILYGLTDFGLANDL 749 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + K + + +L + E Sbjct: 750 NMNV------------------------------NQAKQMIKDYYSAFPSLLDFKEKQVE 779 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 I S+RR S++ + + Sbjct: 780 IATNQGY--------------------------ITTLSNRRRYISELNSTNHNIRQFGKR 813 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 + +Q + DIL M + K IV +HDEI+ E + Sbjct: 814 I---------AVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQIHDEIILEVDNNQ 864 Query: 641 YFSVGTLC 648 + Sbjct: 865 LEQTKKIV 872 >gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle] Length = 608 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 99/679 (14%), Positives = 186/679 (27%), Gaps = 161/679 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D ET G+ Y + L + + D+ + L Sbjct: 37 FLGLDSETT--------GLDIYNDGFRCRLVQFGT-PSEAWVVPVERGGPYAGDVKRALE 87 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112 V HN+ ++ +F++TLG+ + + T +LA SL++ Sbjct: 88 MVQ-GFVLHNAAYDLQVFERTLGVPMEAMWPKVKDTRILAHLIDPRGKDEGGSGHSLEDL 146 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K L+A K + + + + Y D Sbjct: 147 TRRY---IDSAVADNVKTLMADLAKANKTTKVNVWKKVPFEDP--HYQLYSGMDPILAAR 201 Query: 173 LFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L ++L PL D E L + + G+ +D++ +L + + +E + Sbjct: 202 LIQKLAPLVKVSDELVDNEHKLAAICSYMERTGFLLDVEYTEELSLDLQVKESHYNEIAL 261 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKSILSHSNITQLAKDL 277 + T + L G+ + + L ++ H + A + Sbjct: 262 NYGCEKV---NSTDQVADVL-ESMGVRIKGRTPSGKRKVDDAVLSELVEHEKAGEFATAV 317 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 I + ++ + S R + A RT R S Q LP + Sbjct: 318 IEA-KKAGKWRKTWVDGFLKQRDSQNRCHAAINPLRA-RTARMSITGIPAQTLPAGD--- 372 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R C +A G ++ D E RVLA ++ + Sbjct: 373 ------------------------STIRRCFLADEGHRIASVDYQAQELRVLAALSKDQR 408 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF + D+++ T AF I K E Sbjct: 409 MIQAFLDDADLHLMTARAAFGEHIQKDDPE------------------------------ 438 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + A + L + V + + V Sbjct: 439 ---------------RKYAKVVNFGRVYGGGAKTVAEQTGLDMATAQKVVAGFDRAYPEV 483 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 +L + L I RRL + Sbjct: 484 QKLSQRLQREAIRNGYITTP---------------------FIDGLGGRRLPVDPQR--- 519 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635 ++Q+ SRD+ C + G+ + L +HDEI++ Sbjct: 520 ----------------AYSALNYLIQSSSRDVTCRALLRLHDAGFTPYLRLPIHDEILAS 563 Query: 636 TPDTPYFS-VGTLCSLMTK 653 P + LM + Sbjct: 564 VPAEQAEWGANRIGELMAE 582 >gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254] gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254] Length = 370 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 69/470 (14%), Positives = 133/470 (28%), Gaps = 121/470 (25%) Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-------HSN 269 L DI KL DG + L LF I ++ T +L + Sbjct: 2 LQSDIYKLADGEF-NIDSPQQLGEVLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTE 60 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 ++ +L A + + + + R+ T G + TGR S QN Sbjct: 61 DKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQN 119 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R+ +A G L+ D + IE RVL Sbjct: 120 IP------------------------VRTDDGIRIRTGFVAKEGHSLISFDYSQIELRVL 155 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ + +KA+ + +D++ T K F + Sbjct: 156 AELSKDRHLVKAYQDNQDLHDLTARKIFFKTEED-------------------------- 189 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + + + + + + Sbjct: 190 -----------------EISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITT 232 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + ++ V + +TE RR + + + Sbjct: 233 YFEEYPRVRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNIQ-------------- 278 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDI 624 +Q +R +VQ + +I+ + M + + Sbjct: 279 ---------------AQAVRMA------VNTVVQGTAANIIKKVMIELHEEFKNDENIKM 317 Query: 625 VLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +L VHDE++ E D + + +M + K +PLKA G AK + Sbjct: 318 LLQVHDELIFEVRDEFAKEYMKKIEKIMENTVKF-KKVPLKANGSVAKNW 366 >gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens] Length = 891 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 82/630 (13%), Positives = 168/630 (26%), Gaps = 136/630 (21%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G D K + A S ++ Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + +Y + T EL Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K L+ K+L+++ G Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478 Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + + + T +++L+ +IL Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L A G + T G + TGR S Q + + Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFK 596 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ TI+ R+ ++S G + AD + IE R+L ++G+ +K F Sbjct: 597 GKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQE 647 Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 E + T ++ + P+++V+ R K + A+ Y G + Sbjct: 648 SERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC----------- 696 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + +++ K++ + Sbjct: 697 ---------------------------------LGVPIQEAAQFLESFLQKYKKIKDF-- 721 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + +V RR + Sbjct: 722 -----ARAAIAQCHQTG-------------------CVVSIMGRRRPLPRIHAHDQ---Q 754 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635 +Q R+ +VQ + D+ M + +V +HDE++ E Sbjct: 755 LRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFE 808 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665 D L + + +PLK Sbjct: 809 VEDPQIPECAALVR---RTMESLEQVPLKV 835 >gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus] Length = 858 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 84/645 (13%), Positives = 166/645 (25%), Gaps = 142/645 (22%) Query: 65 TVMCVAHNSL-FERILFKKTLG-----IDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + V N+ F R + + LG + + + A Sbjct: 302 KLPVVCFNAKDFVRTVL-QFLGDADSWKHVADFVGLDPRIAAWLIDPR---DA------- 350 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDC----TRANHVQAWQLFGEYCKRDVEA-TREL 173 + K L + + H+ L + L Sbjct: 351 -TLSFEHLVAKYLEKSTTVKVSSTYGNASRNIVNQNVHMNLRILHRLMMTLCSKLKAYSL 409 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ E L + + +++ + + + L+ K+L+++ G Sbjct: 410 WQLFW---TLELPLIPILAVMERHSVQVNKEEMERTSALLGARLKELEQEAH-FVAGERF 465 Query: 234 SSRQTYALRMYLFLITGI------DLVDMS----EGTLKSILSHSNITQLAKDLILNRLA 283 LR LF + L T +++L+ +IL Sbjct: 466 LITSNNQLREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLNALQDLHPLPKIILEYRQ 525 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ L A +G + T G + TGR S Q + R T Sbjct: 526 VHKIKSTFVDGLL-ACMREGSISSTWNQTG-TVTGRLSAKHPNIQGISRHPIHITKPQNT 583 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + TI+ R+ ++S G + AD + IE R+LA ++G+ +K F Sbjct: 584 KGKEDEILTISP---------RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLKLFH 634 Query: 404 NGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 E + T ++ N P++ V+ R K + ++ Y G + Sbjct: 635 ESEREDVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYGAGKERLAAC---------- 684 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + + K++ + Sbjct: 685 ----------------------------------LGVAVPEAARFLETFLQKYKKISDFA 710 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + RR + C+ Sbjct: 711 QAAIAQCHQRGYVTSVT--------------------------GRRRPLPRI---CAQEP 741 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVS 634 +Q R+ +VQ + D+ M +V +HDE++ Sbjct: 742 HLRAQAERQA------VNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLF 795 Query: 635 ETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKAEGYEAKRY 673 E D L M +PLK + + Sbjct: 796 EVEDAQIPEFAALVRGTMESLQQVPALELQLQVPLKVSLSVGRSW 840 >gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] Length = 904 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 88/610 (14%), Positives = 165/610 (27%), Gaps = 123/610 (20%) Query: 82 KTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-LALNFSEHLTKM-EEGKALIARFC 136 + +G+ + + T++ A L + C L + G+AL Sbjct: 395 REIGLRLETVAV-DTALAAYLVRPDQRSYDLADLCLRHLQRELPTAEDSGPGEALFDASE 453 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 R ++A + E L E L + Sbjct: 454 VDGSTDGLTTAARTAALRAAAVRELAPVLQQEVEDIGAAGLERDL--ELPLARHLVAMEA 511 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---- 252 G +D D + L+ A + + D D + L+ LF G+ Sbjct: 512 TGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQEVLFERLGLPKTKK 571 Query: 253 ---LVDMSEGTLKSILSHSNI----TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 L + + ++ + L+ +R + + + L +AV +DGR+ Sbjct: 572 TKTGYTTDADALVWLRAQASEGSTAETFLEALLRHRDVTRLRST--VQGLQKAVDADGRI 629 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T Q A TGR S QN+P A +R Sbjct: 630 HTTYQQTIA-ATGRLSSVDPNLQNIP------------------------IRTEAGRRIR 664 Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + +G L+ AD + IE R++A ++G++ I+AF GED++ +K F ++V Sbjct: 665 EVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQVAPEEV 724 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 + E RA K M L Y + L + + F + + Sbjct: 725 TAEMRAKVKAMSYGLAYG-----LSSFGLSKQLGITPAEASALMDEYFARFGGVRDYLRA 779 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + D+ + ++G L + + E + + Sbjct: 780 VVDEARRTGYTETMLGRRRPL---------PDLASTNRQRREMAERMALNAPIQGSAADV 830 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 +L V+ A+ Sbjct: 831 ---------------------MKLAMLKVEDALDAQRLASRV------------------ 851 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 + +V E +V L M +PL Sbjct: 852 ---------LLQVHDE-----------LVLEVAPDEGSAVEALVREAMGSALD--LDVPL 889 Query: 664 KAEGYEAKRY 673 + + Sbjct: 890 DVSIGTGRSW 899 >gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2] gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2] Length = 604 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 104/677 (15%), Positives = 195/677 (28%), Gaps = 161/677 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D ET G+ Y++ L + + + + Q LR Sbjct: 37 FLGLDTETT--------GLDIYSDDFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALR 87 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112 + V HN+ ++ + ++TLGI + + T +LA L+ Sbjct: 88 NVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEEL 146 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 ++ + K L+A + + + T+ + + Y D Sbjct: 147 VKHY-IDANVAENV--KTLMATLAREYKTTKAHIWTKVELTNPY--YQLYSGMDPILAAR 201 Query: 173 LFKRLIPLSD--------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L ++LIPL E L + + RG+ +D++ KL E + +++ Sbjct: 202 LLQKLIPLVPAVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKA 261 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV----DMSEGTLKSILSHS-NITQLAKDLIL 279 + + + L G+ + K +L + I Sbjct: 262 --DILYGLENVNSPIQVAEALM-RRGVKIKERTETGQPKVDKVLLDRLIKEGDPLAEAIT 318 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ S R + A RT R S Q LP + Sbjct: 319 EAKKWGKWEKTWVRKFLDSRDSKDRCHANINPLQA-RTARMSITGIPAQTLPSGDW---- 373 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR C +A G+ + D E RVLA ++G+ I Sbjct: 374 -----------------------LVRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMI 410 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF +G D+++ T A+ Sbjct: 411 QAFKDGADLHLMTARAAW------------------------------------------ 428 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + S + + + A + L A + V + + GV + Sbjct: 429 --PDREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQR 486 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 L L + HIV P RRL + Sbjct: 487 LSAKLQREASQNG--------------------------HIVTPKGRRLPVDPSR----- 515 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETP 637 ++Q+ SRD+ E + + G+ + L +HDEI++ P Sbjct: 516 --------------AYSALNYLIQSTSRDVTGEALIRLHEAGFTKYLRLPIHDEILASVP 561 Query: 638 DTPYFS-VGTLCSLMTK 653 + + LM + Sbjct: 562 EDKAQWGAQEIARLMAE 578 >gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 911 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 91/668 (13%), Positives = 176/668 (26%), Gaps = 141/668 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58 D E S L + + I + + D ++ S Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377 Query: 59 ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ L K + S V + + + Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-VSDLSN 436 Query: 115 ALNF-----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + GK + Y +A L +Y + +E Sbjct: 437 QIKLVDNLIELETIDEIFGKGVKKNPDIDLDIKSKYISKKAY------LLKKYSDQLIE- 489 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + + L + I +G ID + + + I ++ ++ + L Sbjct: 490 QLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEWQMKILVA 549 Query: 230 GIIRSS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 I ++ ++ LF + ++ T K +L +L+L + Sbjct: 550 EEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITYHPIINLLLEHRKYTK 608 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + + D ++ + + TGR S QN+ Sbjct: 609 LYTTYLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI---------------- 651 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 VR I +N K + D + IE RVLA ++ E I AF Sbjct: 652 --------SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNA 703 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI++ FN D+++ EQR I KV GL + ++ Sbjct: 704 DIHLQAAKLIFNLSDDQITSEQRRIAKVF--------------NFGILYGLTDFGLASDL 749 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + K + + +L + E Sbjct: 750 NMNV------------------------------NQAKQMIKDYYSAFPSLLDFKEKQVE 779 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 I S+RR +++ + + Sbjct: 780 IATSKGY--------------------------ITTLSNRRRYINELNSTNHNIRQFGKR 813 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 + +Q + DIL M + K I+ +HDEI+ E D Sbjct: 814 I---------AVNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQ 864 Query: 641 YFSVGTLC 648 + Sbjct: 865 LEQTKKIV 872 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 91/679 (13%), Positives = 185/679 (27%), Gaps = 134/679 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 +ID T S +G+ +T A E + ++ + L ++L + Sbjct: 320 WID--TNSAHGSAPLGLTVAIVDGTVTGLGLATATETAFVPWAADRLDYVA-LTEWLASD 376 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLT 123 H+S + + G+DI + T + + N+ Sbjct: 377 A-PKFMHSSKAQLKI-ASANGLDIAGIAF-DTMLAGWVLKPGGKPEELEAQVYNYLGETI 433 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLIPLS 181 P + +W + EY ++ L L+ Sbjct: 434 -----------DQGDPNQLVPETEALSPATLSWYVVRVAEYLAGRLD-----EGSLGVLT 477 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G ++ L+L L + + +++ + ++ I + L Sbjct: 478 DIEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREI-NLGSPKQL 536 Query: 242 RMYLFLITGIDLV---DMSEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLS 296 + LF + T + L+ +L+L ++ + + + Sbjct: 537 QEVLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKL-VQIITGIE 595 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +A+ GR+ T + G S TGR + QN+P Sbjct: 596 KAIDDSGRVHTTYEQAG-SSTGRIASNDPNLQNVP------------------------I 630 Query: 357 LGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +RS A G L+ AD + IE R++A ++G++ I+AF GED++ ++ Sbjct: 631 KTATGRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSR 690 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F +V+ E R K M L Y L ++ T F + Sbjct: 691 IFGVEPAEVTAEMRTKVKAMSYGLAYG-----LSAFGLSKQLRIETSEAKALMTDYFARF 745 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + +Q + G + + L + Sbjct: 746 GAVRDYLRNVVEQARTDGYTTTIFGRRRP---------FGDLNSKNRVLRDNAERQALNS 796 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + +L + D + Sbjct: 797 PIQGSAADI---------------------LKLAMLRIDSDMRVEGLKSR---------- 825 Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + +V E + T+ M+ Sbjct: 826 -----------------MLLQVHDE-----------LVFEIAGGELERMTTIVHERMSGA 857 Query: 655 PSWAKGLPLKAEGYEAKRY 673 S +PL + + Sbjct: 858 AS--LSVPLDVQIGTGHNW 874 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 65/509 (12%), Positives = 136/509 (26%), Gaps = 111/509 (21%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 8 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 66 Query: 234 SSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + T +L IL+ + Sbjct: 67 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 126 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P Sbjct: 127 STYVIGLQDYILADGKIHTRYVQ-DLTQTGRLSSVDPNLQNIP----------------- 168 Query: 349 RGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R L+ +D + IE RVLA I+G++ I AF G D Sbjct: 169 -------IRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 221 Query: 408 IYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 I+ +T + F V+ R K + + Y L + + Sbjct: 222 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYG-----ISDFGLSNNLGITRKQAKS 276 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + FE + +++ + + + + L EL + ++ Sbjct: 277 YIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRREL---------PDINSRNFNVRS 327 Query: 527 GFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + SA + + + + + + Sbjct: 328 FAERTAINSPIQGSAADILKISMINLDKALQAGGFR------------------------ 363 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 + + IVL V P+ ++ Sbjct: 364 -------------------------AKCLLQVHDE---IVLEV--------PNDELTAIK 387 Query: 646 TLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 L M A +PL + + + Sbjct: 388 KLVKDTMEAAVDLA--VPLCVDESTGQSW 414 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 92/659 (13%), Positives = 173/659 (26%), Gaps = 124/659 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE-TVMCVAHNSLFERILFKKTLGI 86 +T A A D T + L + H + + G Sbjct: 360 GDVTAVAIAAPDGEGAYISTTTATPEDEAALADWLADAGRPKALHEAKRAMHAL-RGRGW 418 Query: 87 DIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + T++ A +L + L E + D+ Sbjct: 419 MLAGLT-SDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEE---SGQQQLSLLDDEDAA 474 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + +++ + D E L+ D E L + + G +D Sbjct: 475 DAEAAEGEILRSRAVRDLAAALDTELADIEATGLLA--DMELPLLEVLANLESTGIAVDT 532 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------- 256 + LQ A + + G + L++ LF + Sbjct: 533 THLHDLQSAFAARVAE-AAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTT 591 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 L+S+ + L +L ++ + ++ L + V+ DGR+ T A Sbjct: 592 DADALQSLFEKTQHPFLEH--LLEHRDATRLKVT-VDGLLKTVAEDGRIHTTFNQTVA-A 647 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P A +R + G Sbjct: 648 TGRLSSTEPNLQNIP------------------------VRTDAGRQIRDGFVVGEGYET 683 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G+ I+AF GED++ ++AF PI++V+ E R K M Sbjct: 684 LLTADYSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAM 743 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y L + + + F + + + +Q + Sbjct: 744 SYGLAYG-----LSAFGLAAQLKISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYT 798 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + L G R + + E ++ + Sbjct: 799 ETLFGR---------RRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMIDVQ-- 847 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R L + ++ + Sbjct: 848 ----------RALREA--------------------------------GLAS----RMLL 861 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL E V L M +PL+ + + Sbjct: 862 QVHDE---LVL--------EVAAGERERVEQLVREKMAAAID--LSVPLEVSVGTGRSW 907 >gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] Length = 1042 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 94/668 (14%), Positives = 185/668 (27%), Gaps = 154/668 (23%) Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILF-----KKTLGIDIPS---KRWICTSVLARTN- 103 + L Q LR E+ V H+ + G + T + A Sbjct: 479 LIEALDQLLRQESDHIVLHDFK---RWLHLTSNLRNQGQPLGGPDFLPVADTKLEAYLAQ 535 Query: 104 -GLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + + L+ TK + + F G A + Sbjct: 536 PDATAKVDGLRHYAQKFLHLDVGETKEKT--SEQGAFDLGLESDEETGENSAPSPEPADP 593 Query: 159 FGEY-------CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRI 201 E C D R L P+ E + + + G + Sbjct: 594 RQEEREREETDCALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGV 653 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-- 259 D + +++E + + ++ + I G + + L+ LF G+ ++ Sbjct: 654 DQSRLEQMRESFSAQAEQ-AQQIAWQEAGKEINLQSPKQLQAVLFDDMGLTPTKKTKSGG 712 Query: 260 --TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVS-SDGRLRGT 308 T + L + + + L+ +R + I + TL +A+ D R+ T Sbjct: 713 RTTNAAALQELYMRSIHNERANAFLGALLRHREVNKLKQI--VQTLIDAIDVRDSRIHTT 770 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + A TGR S QN+P + +R Sbjct: 771 FEQTVA-ATGRLSSTDPNLQNIP------------------------NRNVEGREIRGAF 805 Query: 369 IASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +AS+G + L+ +D + +E R++A ++G++ I+AF +G D + + + PID++S + Sbjct: 806 VASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSD 865 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 QR+ K M L Y T L + ++ F + + + + Sbjct: 866 QRSHIKAMSYGLAYG-----LSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLESLVA 920 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 Q + + + G R + + L + + Sbjct: 921 QAKKRGYTETMFGR---------RRYFPDLRSSRRQLRDAAERAALNAPIQGSAADIMKI 971 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 + Y D+K Sbjct: 972 A-----------------MKKAYQDLKDAGVKSR-------------------------- 988 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666 I+ +V E V + M A +PL Sbjct: 989 -II----LQIHDE-----------LVVELAPGEQEQVTAMVKEAMEHAVKLA--VPLDVS 1030 Query: 667 GYEAKRYR 674 ++ Sbjct: 1031 TGVGSDWQ 1038 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 89/621 (14%), Positives = 165/621 (26%), Gaps = 126/621 (20%) Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSE 120 + H+ + G + T++ A + L Sbjct: 421 SRPKAVHDVKGPILALA-ARGFSLAGVT-SDTALAAYLALPGQRTFDLADLVLRYLRRDL 478 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 E G+ I + + + RA A L + +R A Sbjct: 479 RPETSETGQLTIDGSDEAAAAAADVVRARATLELADALDADLARRGATALLR-------- 530 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + + G D D +L LQ+ + ++ ++ + Sbjct: 531 -DVELPLVTVLAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPF-NLSSPKQ 588 Query: 241 LRMYLFLITGIDLVD---MSEGTLKSILSHS---NITQLAKDLILNRLASSGSAILKLNT 294 L++ LF G+ T L+ L L+ +R + +++ Sbjct: 589 LQVILFDELGLPKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVARLR--TVVDS 646 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + GR+ T A TGR S QN+P Sbjct: 647 LIPMIDDAGRVHTTFNQMIA-ATGRLSSADPNLQNIP----------------------- 682 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + L+ AD + IE R++A ++G+ I AFA+GED++ Sbjct: 683 -VRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTFVA 741 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+AF P+D+V E R K M L Y L + + + F Sbjct: 742 AQAFGIPVDEVDPELRRRIKAMSYGLAYG-----LSAFGLAGQLGIHPEEAREQMEAYFA 796 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + ++ + ++G R + + + Sbjct: 797 RFGGVRDFLRGVVERARADGYTETILGR---------RRYLPDLTSDNTQRRQMAERMAL 847 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + +L R+L + Sbjct: 848 NAPIQGSAADIIKI------------AMLGVDRKLREHGARSRL---------------- 879 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 + DE+V E V L M Sbjct: 880 --------------------LLQVH-----------DELVLEIAPGERADVEALVRTEMG 908 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + +PL+ + + Sbjct: 909 GA--YQMSVPLEVSVGSGRTW 927 >gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta] Length = 1484 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 83/636 (13%), Positives = 165/636 (25%), Gaps = 139/636 (21%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G D K + A S ++ Sbjct: 915 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFVGLDPRIAAWLIDPSDAVPSFEDLVEK 973 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + EY + T E+ Sbjct: 974 YCEKSITVKVNSTYENSSRNIVNQNVRDNLKILYRLTMDLCSKLKEYGLWQLFCTLEV-- 1031 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K+ L+ KKL+++ + Sbjct: 1032 ----------PLIPILAVMESHAIQVNKEEMEKISALLGARLKKLEQEAHFVAGERFLIM 1081 Query: 236 RQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + + + T +++L+ +IL Sbjct: 1082 SSN-QLREILFGKLKLHLLSRRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 1140 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L A G + T G + TGR S Q + + Sbjct: 1141 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFK 1198 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + TI+ R+ ++S G + AD + IE R+LA ++G+ +K F Sbjct: 1199 GKEDEILTISP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 1249 Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 E + T ++ + P++ V+ R K + A+ Y G + Sbjct: 1250 SERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAGKERLAAC----------- 1298 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + +++ K++ + + Sbjct: 1299 ---------------------------------LGVPVQEAAQFLESFLQKYKKIKDFAR 1325 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + RR + Sbjct: 1326 AAIAQCHRTGYVVSIM--------------------------GRRRPLPRIHAHDQ---Q 1356 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSE 635 +Q R+ +VQ + D+ M +V +HDE++ E Sbjct: 1357 LRAQAERQA------VNFVVQGSAADLCKLAMIRVFTAVATSRTLTARLVAQIHDELLFE 1410 Query: 636 TPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKA 665 D L M + +PLK Sbjct: 1411 VEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 1446 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 78/621 (12%), Positives = 155/621 (24%), Gaps = 131/621 (21%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKN 111 L ++L V ++ + + GI + + +L + Sbjct: 367 DALAEWLAS-DTPKVMADAKPQVKALLR-EGIALGGIA-SDVILAGWLVRPSFPDKTLGD 423 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + P AW + + + Sbjct: 424 LVQRYLDEKLPEADPT-------------QLVPETEGATPGQLAWFIRRVAEAQRADLPE 470 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + + L D E + G + + + L D Sbjct: 471 RVAEVLD---DIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHE 527 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI--TQLAKDLILNRLASSG 286 + + L+ LF + ++ T + L+ DL+L ++ Sbjct: 528 V-NLGSPKQLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREATK 586 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L A DGR+ T G S+TGR S QN+P Sbjct: 587 LK-QIIDALDTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIP--------------- 629 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R+ G L+ AD + IE R++A ++G+ I+AF +G Sbjct: 630 ---------IRTEESRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSG 680 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 ED++ A+ F +V+ R K M L Y L ++Q Sbjct: 681 EDLHRFVGARVFGVEPAEVTPAMRTKVKAMSYGLVYG-----LSAFGLSKQLRIEQSEAK 735 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 F + + +Q + + + G + + + L Sbjct: 736 KLMLEYFARFGAVRDYLRGSVEQARQDGYTETIFGRRRP---------FPDLTSMNRVLR 786 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E + ++ ++ + + + Sbjct: 787 ENAERAALNAPIQGSAADI---------------------MKVALFRIREELASAGLRSR 825 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 + DE+V E + +V Sbjct: 826 V---------------------------LLQIH-----------DELVVEIAPGEWDAVE 847 Query: 646 TLCS-LMTKNPSWAKGLPLKA 665 + M +PL Sbjct: 848 RIVRARMADAAE--LSVPLDV 866 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 101/676 (14%), Positives = 191/676 (28%), Gaps = 159/676 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D ET G+ Y++ L + + + + Q LR Sbjct: 37 FLGLDTETT--------GLDIYSDGFRCRLVQFGTPN-EAWVIPVELGPRYEEEARQALR 87 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112 + V HN+ ++ + ++TLGI + + T +LA L+ Sbjct: 88 NVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVDPRPFKEGGIGHKLEEL 146 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + K L+A + + + T+ + + Y D Sbjct: 147 VKHY-IDAPVAENV--KTLMATLAREYKTTKAHIWTKVEWTNPY--YQLYAGMDPILAAR 201 Query: 173 LFKRLIPLSD--------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L ++LIPL E L + + RG+ +D++ KL E + +++ Sbjct: 202 LLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASKA 261 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---SEGTLKSILSHS-NITQLAKDLILN 280 + + + L K +L + I Sbjct: 262 --DILYGLENVNSPIQVAEALMRRGVKITERTEGGQPKVDKVLLDRLIKEGDPLAEAISE 319 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ S R ++ A RT R S Q LP + Sbjct: 320 AKKWGKWEKTWVRKFLDSRDSKDRCHASINPLQA-RTARMSITGIPAQTLPSGDW----- 373 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR C +A G+ + D E RVLA ++G+ I+ Sbjct: 374 ----------------------LVRRCFLADEGELMASVDYQAQELRVLAALSGDRTMIQ 411 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AF +G D+++ T A+ Sbjct: 412 AFRDGADLHLMTARAAW------------------------------------------- 428 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + S + + + A + L A + V + + GV +L Sbjct: 429 -PDREITKDSPERKYAKTVNFGRVYGGGAKTVAEQTGLDMEAAKQVVDGFDRAYPGVQKL 487 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + L + HI+ P RRL + Sbjct: 488 SRKLQMEASQKG--------------------------HIITPVGRRLPVDPSR------ 515 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638 ++Q+ SRD+ + + G+ + L +HDEI++ P Sbjct: 516 -------------AYSALNYLIQSSSRDVTGRALIRLHEAGFTRYLRLPIHDEILASVPA 562 Query: 639 TPYFS-VGTLCSLMTK 653 + LM + Sbjct: 563 DKAQWGAQEIARLMAE 578 >gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1] Length = 474 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 82/592 (13%), Positives = 157/592 (26%), Gaps = 134/592 (22%) Query: 91 KRWICTSVLARTNGL-PSSLKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 R T +LA L I F + Sbjct: 3 IRIQDTQILAFLKNPEKVGFDEVLKEYLKEELIP------HEKIKDFKAKAEKLELLSVE 56 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + F + + + + E + + +G++ID Sbjct: 57 LNALKRLCEYFEKGGLEENLLSLA--------REVETPFVKVLMGMEFQGFKIDAPYFKC 108 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L++ E L+ I+ L + L L+ G+ + S T + L Sbjct: 109 LEQEFKNELHVLERQILDLIGVDF-NLNSPKQLSEVLYEKLGLP-KNKSHSTDEKSLLKI 166 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + LIL + L D ++ T G + TGR S Q Sbjct: 167 LDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQ 225 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P +R IAS L+ D + IE R Sbjct: 226 NIP------------------------VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELR 261 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA + + ++AF G DI++ T F ++KE+R+I K + Sbjct: 262 LLAHFSQDKDLMEAFLKGRDIHLETSKALFGGD---LAKEKRSIAKSINFG--------- 309 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ + + + + Sbjct: 310 -----LVYGMGS------------------------------KKLSETLNISLNEAKSYI 334 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 +A+ + + + E + + RV + + Sbjct: 335 EAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREG------ 388 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GY 622 I Q + D+L GM ++ Sbjct: 389 ------------------------------VNAIFQGSASDLLKLGMLKVSERFKNNPSV 418 Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE++ E + + + ++ + +PL+ + AKR+ Sbjct: 419 RLLLQVHDELIFEIEEKNALELQQEIQRILNDEV-YPLRVPLETSAFVAKRW 469 >gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 911 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 182/664 (27%), Gaps = 133/664 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-------- 58 D E S L + + I + + D ++ S Sbjct: 320 DYE-DSINYLYVESLEEDYHKDKIIGIGISNNKGN-FYLDFKNKAQQLSFFEDTTLSSTD 377 Query: 59 ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ L K + S V + + + Sbjct: 378 SLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDFDFMVACYSLNANV-ISDLSN 436 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + +++ ++E F KG +P D + + + + D + Sbjct: 437 QIKLVDNMIELETIDE---IFGKGVKKNPDIDLDIKSKYISKKAYLLKKYSDQLIEQLKQ 493 Query: 175 KRLIP-LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L + I +G ID + + + I ++ ++ + L I Sbjct: 494 TNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQTQQILKKINHIEGQMKILVAEEID 553 Query: 234 SS---RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 ++ ++ LF + ++ T K +L +L+L + I Sbjct: 554 NNFNFSSPKQIQELLFDKLKLPNLEKG-TTSKEVLEKLITFHPIINLLLEHRKYTKLYIT 612 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L + + D ++ + + TGR S QN+ Sbjct: 613 YLKGFEKFIFDDNKVHTIFN-HTLTNTGRLSSSYPNIQNI-------------------- 651 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR I +N K + D + IE RVLA ++ E IKAF DI++ Sbjct: 652 ----SIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHL 707 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 FN D+++ EQR I KV GL + ++ Sbjct: 708 QAAKLIFNLSDDQITSEQRRIAKVFN--------------FGILYGLTDFGLANDLNMNV 753 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + K + + +L + E Sbjct: 754 ------------------------------NQAKQMIKDYYSAFPSLLDFKEKQVEIATN 783 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 I S+RR ++ + ++ Sbjct: 784 QGY--------------------------ITTLSNRRRYIDELNSTNHNIRQFGKRI--- 814 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DIL M + K IV +HDEI+ E D Sbjct: 815 ------AVNTPIQGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQT 868 Query: 645 GTLC 648 + Sbjct: 869 KKIV 872 >gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum] gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum] Length = 1588 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 93/657 (14%), Positives = 189/657 (28%), Gaps = 144/657 (21%) Query: 17 PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL 74 +G+ + I+ A W D ++ + + ++ + +N Sbjct: 1054 RTIGLNHTIKSPEVPISGFALFWGHSTAYYLDVAKKRETIDLIRHIVNEQQKTIIMYNCK 1113 Query: 75 FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR 134 + K G++ R V + + L+ Sbjct: 1114 QQIKTLHKWHGVEFR-SRVHDPKVADWLLQPEG----------------QDKTLHQLVET 1156 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 +C D + + + + +++E L+ + D E + + I Sbjct: 1157 YCPELPLDQGQDAKLRSIFECY--LSWHVLKNIEVELS-KSNLLTVFDTEMSIMRILANI 1213 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G ++ + L +L+ +E K ++ + G S + L L Sbjct: 1214 ELAGIGANVSTLSNLVDLLTRELKAIERQGHAIA-GRHFSFASSRQLAKILQSDNN---- 1268 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 S+ +L+ LIL S + L L V +GR+ G + A Sbjct: 1269 --SKKSLQK------NDNPLASLILKWRKISATIGKTLQPLIRLV-ENGRIFGCYVTHTA 1319 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR + QN+ + + + R + S G Sbjct: 1320 --TGRITMHEPNLQNVAKDFDIDGVEV---------------------SCRKAFVPSQGH 1356 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +V AD +E RVLA ++ ++ DI+ AK N ++V++E R K Sbjct: 1357 VMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQ 1416 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y G+K L+ + Sbjct: 1417 IIYGIIYGMGSKALAE-----QLNTDEAQAT----------------------------- 1442 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + +R + GV + ++ E Sbjct: 1443 ----------RFMQTFRNAYPGVQKYISEIIETCRKTG---------------------- 1470 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 + + RR + + + + Q R+ +Q + D++ M Sbjct: 1471 ----FVETLAGRRRFLAHINHKNGAVKS---QAERQA------VNTTIQGSAADLVKMAM 1517 Query: 615 KNAT-----KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665 + +VL +HDE++ E P+ S V L + M + + P+K Sbjct: 1518 VRLETVFLGEKEVKLVLHLHDELLYEVPEGSLGSFVRILKTEMEGSVKLSIPFPVKV 1574 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 92/693 (13%), Positives = 190/693 (27%), Gaps = 149/693 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLF 75 K + A E V+ E + T + S +++ D + + + Sbjct: 371 TKTKIRAAEENPVLRGI-ILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKN 429 Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSL-----KNACL-ALNFSEHLT-K 124 +R + G + S+ + G L ++ L + + Sbjct: 430 QRK-LLREYGYKLDG-AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSE 487 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 + + ++ F ++ Y + + + + +L D E Sbjct: 488 LVFPEEALSLFEMPGEENLRYFTQVSRVIHELARILHF-------EMQEQGQLKIYEDIE 540 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSSRQTYA 240 L + + G + L+ +L + + +E +G + Sbjct: 541 LPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQ 600 Query: 241 LRMYLFLITGIDLV-------DMSEGTLKSILS----HSNITQLAKDLILNRLASSGSAI 289 L+ LF G+ ++ +L+ S+ Q L R Sbjct: 601 LQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQT 660 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L +A +DGR+ T Q AS TGR S QN+P Sbjct: 661 --VEGLQKAAVTDGRVHTTFQQNAAS-TGRLSSTAPNLQNIP------------------ 699 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-------LVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I + L+ AD + IE R++ +A ++ I+A+ Sbjct: 700 ------IRTDEGRRIRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIMVHLAADEKLIQAY 753 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 A+GED++ ++ F ++V+ + RA K M L Y L++ Sbjct: 754 ADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYG-----LSRFGLAKQLNISSD 808 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 T+ F+ + + + Q + + G R + + Sbjct: 809 EAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGR---------RRSLPDLDSPNR 859 Query: 523 DLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 E +A + + + + RRL +K Sbjct: 860 TRREAAERAALNAPIQGTAADIIKIAMINIH-------------RRLQEEKLKT------ 900 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + EI+ E Sbjct: 901 ------------------------------RMLLQVHD-----------EIILEVAVGER 919 Query: 642 FSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + M++ +PL + K + Sbjct: 920 EAAQRILVEEMSEAIE--LKVPLDVQVGWGKSW 950 >gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus] Length = 975 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 81/653 (12%), Positives = 177/653 (27%), Gaps = 150/653 (22%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGID-----IPSKRWICTSVLARTNG 104 + ++L+ + N+ F R + G D + + + A Sbjct: 298 ENVLREVLR----RKRPVICFNAKDFVRTAL-QLFGDDGSWKCVAGFVGLDPRIAAWLID 352 Query: 105 LP---SSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 S ++ L L G+ + T ++ Sbjct: 353 PSDAAPSFEDLVAKYLGNPTT---------LTVNSMHGNSSRKTVNQTVRAKLRVLHRLT 403 Query: 161 EYCKRDVEAT--RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + ++ +LF L E L + + R++ + + ++ L+ K Sbjct: 404 MHLCSQLQVCGLWQLFWTL------ELPLIPILAVMESHRIRVNKEEMERMSALLGSRLK 457 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-------LVDMS----EGTLKSILSH 267 +L+++ G + LR LF + T + L+ Sbjct: 458 ELEQEAH-FVAGEQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNA 516 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 +IL ++ L A G + T G + +GR S Sbjct: 517 LQDLHPLPRIILEYRQVHKIKSTFVDGLL-ACMKKGSVSSTWNQTG-TVSGRLSAKHPNI 574 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 Q + + + + ++ S R+ ++S G + AD + IE R Sbjct: 575 QGISKHPIQ----------ITKPQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELR 624 Query: 388 VLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 +LA ++G+ +K F E + T ++ + ++V+ R K + A+ Y G Sbjct: 625 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGAGK 684 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + + Sbjct: 685 ERLAAC--------------------------------------------LGVPVREAAR 700 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 +++ K++ + + + R ++ ++ Sbjct: 701 FLESFLQKYKKIKDFTQA--------------------------TVARCQQTGYVESIMG 734 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----- 620 RR ++ +Q R+ +VQ + D+ M Sbjct: 735 RRRPLPRIRAHDP---QLRAQAERQA------ANFVVQGSAADLCKMAMIRIFTAMATSP 785 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKA 665 ++ +HDE++ E D+ L M +PLK Sbjct: 786 TLTARLLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKV 838 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 77/590 (13%), Positives = 157/590 (26%), Gaps = 148/590 (25%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 +L L ++++ + ++ L K ++ Sbjct: 372 ILNLLTNKSIKKITYSLK---HLLKFYANQSHQITAIEDLELMQYALS------------ 416 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 G F K + + + L+ + + K Sbjct: 417 ----------AGLVQKNLFTKTLTKDNIINESARIVINFISLYKQ-----TLLELQKNKA 461 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + + + G ++D + + +L + E K++E+I L+ + Sbjct: 462 FRLYREIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKF-NIG 520 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKS------ILSHSNITQLAKDLILNRLASSGSAIL 290 L LF + + T + S L+L + Sbjct: 521 SQKQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNT 580 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++L + +++ + T ++ TGR S QN+P Sbjct: 581 YTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVP------------------- 621 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 + +R IA G KL+ AD + IE R+L+ IA D +AF N EDI+ Sbjct: 622 -----IRSSDGNKIREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHT 676 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + FN +++ E R K + G+ Sbjct: 677 QTACQIFNLKKHELTSEHRRKAKAIN--------------FGIIYGIS------------ 710 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A + + + K + A+++GV + + Sbjct: 711 ------------------AFGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACASR 752 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + R+ + R Sbjct: 753 NGY--------------------------VTNFFGRKCFIPLIHDKK-----LKQFAERA 781 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVS 634 +Q + DI+ M K ++L +HDE++ Sbjct: 782 AINAP------IQGTNADIIKIAMIKLDKEIEERKLKTRLILQIHDELLF 825 >gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] Length = 1334 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 107/738 (14%), Positives = 205/738 (27%), Gaps = 97/738 (13%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-------WDDEPVKLWDRT---EQS 51 D ET L KV + + +D D Sbjct: 624 KYHACDTETI-AIDLKKVSP---IGHGRMICFSIYCGPDVKFFDGNTRLWVDVMDDINGE 679 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------ 105 A+ + +Y DE+++ V HN F+R +F I++ T +AR Sbjct: 680 AVLQEFKEYFEDESILKVWHNYAFDRHIFYNH-NINVKGFG-GDTLHMARLWNAARQNSG 737 Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSID-SPPYDCTRANHVQAWQLFGEYC 163 SL+ C LN ++ K G+ I + + P ++ + EY Sbjct: 738 GYSLEALCRELLNKTKTPIKDLFGQKKIKANGEAGKAITIPPLQRIQRDRRSILDWIEYS 797 Query: 164 KRDVEATRELFKRLIPLSDG--------ERDLW--------LLDQTINDRGYRIDLDLVL 207 D E T L + L + D + L + RG +ID+D + Sbjct: 798 SLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLNWRPFGHLLTEMEQRGMKIDIDYLK 857 Query: 208 KLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 L+ ++ ++ + + ++ LF ++ T + Sbjct: 858 NLESTAFKDMEENRNRFISWASKHSEGAKYMNPDSDAQIQQLLF------APVTNKKTKE 911 Query: 263 SILSHSNITQLAKDLILN--RLASSGSAILKLNTL---SEAVSSDGRLRGTLQFYGASRT 317 + + + I+ R + L+ L S +V++ G AS Sbjct: 912 EMPKSKDFETENVEGIIEEGRTKPKKNMSFILDGLGFPSNSVTTSGWPSVD-----ASAL 966 Query: 318 GRWSGCVFQ-------PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 +G + Q + ++E + LG + + II Sbjct: 967 RELAGKSPENGKFGTAYQFFVDKSENKEEGEALGKEACLAIASLLELGTIGTLLNTFIIP 1026 Query: 371 SNGKKLVVAD-LAGIEAR--VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +AD + + V + N + Y + + Sbjct: 1027 ----LQKLADKNSRLHTSVNVNTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTL 1082 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 A +EL L A G D + E ++ E W D Sbjct: 1083 IVADYGQLELRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGD 1142 Query: 488 QYPEFAVKDKLIGTACEL-----VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 P + + + A+ G+ W + + Sbjct: 1143 GEPPKPLLKNIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETL-NRWYEDRPE 1201 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 V R + R D+ + R + Sbjct: 1202 VLVWQRKTIATAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHA---ERASI------NTPL 1252 Query: 603 QAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + DI+ + M + GY +++ +HDE++ E P+ L +LM+ Sbjct: 1253 QGGAADIVMKAMLIIEDNKRIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSNPL 1312 Query: 656 SWAKGLPLKAEGYEAKRY 673 + + L + AK + Sbjct: 1313 TTPLLIDLVVDCRYAKTW 1330 >gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810] gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810] Length = 904 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 71/507 (14%), Positives = 136/507 (26%), Gaps = 118/507 (23%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E+ L + +T+++RG ID + L+E + + + + + L Sbjct: 498 ELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEV-NLASPKQL 556 Query: 242 RMYLFLITGIDLVDM---SEGTLKSILSHSN--------ITQLAKDLILNRLASSGSAIL 290 ++ LF + T L+ Q L+ R S Sbjct: 557 QVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFREMSKL--TG 614 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L L + V + R+ T Q A TGR + QN+P Sbjct: 615 YLVGLDKVVDAGSRVHTTFQQTAA-ATGRLASTEPNLQNIP------------------- 654 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A G L+ AD + IE R++A ++ + I+AF +GED++ Sbjct: 655 -----VRTAEGQRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLH 709 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 ++ F D V R+ K + L Y L + + Sbjct: 710 NFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYG-----LSAFGLSRQLRISRAEATALRD 764 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 FE + + + + ++G R + + E Sbjct: 765 GYFERFGGVRDYLHHTVETARTTGYTETILGR---------RRYLPDLTSDNRQRRENAE 815 Query: 530 C-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + SA + + L + R Sbjct: 816 RVALNSPIQGSAADIIKLAMLRVESRMR-------------------------------- 843 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 + ++ + +V E V + Sbjct: 844 -----------------AAELSSRMLLQVHDE-----------LVVEVAAGELDQVREIV 875 Query: 649 SL-MTKNPSWAKGLPLKAEGYEAKRYR 674 M + +PL + +R Sbjct: 876 EEGMGSA--YQLSVPLDVGVGIGRTWR 900 >gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 661 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 104/343 (30%), Gaps = 53/343 (15%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 L +D ET S P+ +A + +++ ++ DR E + Sbjct: 348 KILSLDTETTSTSPM----------EAELVGLSFSVKEKEAFYVAIPKDREEALQYVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 D ++ V N ++ ++ + G+DI K + T + L ++ Sbjct: 398 KPLYEDPEILKVGQNIKYDYVVLRNY-GVDIQGKMF-DTMLAHYLIQPELRHNMDYMAET 455 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ + G K + + Y EY D + T L Sbjct: 456 LLHYQTMHIEELIGPKGKGQKNMRDLSPEEIY---------------EYAAEDADITLRL 500 Query: 174 FKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P E L + + G +D + + +++ + ++ + Sbjct: 501 KNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELNGVLLDTESLNEIERTFTERMQQYERH 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLI 278 +L + + LF I D ++ T + +L + I Sbjct: 561 AFELAGEEF-NISSPKQVGEILFGKMKIVDKPKKTKTGQFVTSEEVLLQLKDKAPIVEDI 619 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 LN + L + ++ G + + + TGR Sbjct: 620 LNYRGMKKLLGTYVEALPKLINPRTGHIHTSFNQAV-TATGRL 661 >gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01] gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01] Length = 682 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 121/684 (17%), Positives = 209/684 (30%), Gaps = 173/684 (25%) Query: 1 MSK--LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + L +D+ET G+ + + + A V ++D Sbjct: 145 MRQPVLGVDLETT--------GLDPHTSRPRLLSLAM---PGAVVVFDLFGVP--LEVFY 191 Query: 59 QYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114 R+E + V HN F+ + K KR T + + + +LK+ Sbjct: 192 PLFSREEGPLLVGHNLKFDLLFLLKAGVWRASGKRLWDTGLAHQVLHAQARMPALKDLAP 251 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L+ K L G + S + L+ E R Sbjct: 252 GLD-----------KTLQTSDWGGPLSSEQVAYAGLDAAVPLVLYREQR------ERART 294 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 RL + + ER + +G +L + +E + L ++ + Sbjct: 295 LRLEKVLEVERRALPAVAWMELKGVPFAPELWEEAAREAEREAEALRGELPFG-----VN 349 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + YL G+DL D E T L+ L L+ R A+ + Sbjct: 350 WNSPAQVLAYLKGE-GLDLPDTREDT----LAGYREHPLVAKLLRYREAAKRVST-YGKE 403 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 ++ ++ GR+ + Q GA TGR + Q +PR Sbjct: 404 WAKHLNPATGRIHPSWQQIGAE-TGRMACRKPNLQQVPRDPA------------------ 444 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R G+ ++ AD + IE R+ A IA E ++AF G+D++ T Sbjct: 445 ----------LRRAFRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTA 494 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + P+++V KE R + K + L Y GA+ + A Sbjct: 495 SLVLGKPLEEVGKEDRQLAKALNFGLLYGLGAEGLRRYALT------------------- 535 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A KL + ++ A+ + + + + Sbjct: 536 -------------------AYGVKLTLEEAQKLRDAFFRAYPALKRWHR----------- 565 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + + +V + RR Y Sbjct: 566 ------------------SQPEGEVVVRTLLGRRRTTDR--------------------Y 587 Query: 594 GGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFS-VGTL 647 KL VQ D L + +N G VL VHDE+V E P+ + TL Sbjct: 588 TEKL-NTPVQGTGADGLKMALALLWENRGLLWGAFPVLAVHDEVVLEAPEEGAKEYLETL 646 Query: 648 CSLMTKNPSWAKG--LPLKAEGYE 669 +LM + G +P++ EG Sbjct: 647 TALMRRGMEEVLGGAVPVEVEGGI 670 >gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] Length = 585 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 102/719 (14%), Positives = 188/719 (26%), Gaps = 207/719 (28%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 FID ET I L + P+ + D P + + + Sbjct: 26 FIDTETTPKD---------------IRLFQVGLESGPIYVIDFLFVKRAPELIKDIIAKK 70 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 V HN ++ K DI T V A+ GL + N Sbjct: 71 GVA--GHNLKYDLKYLMKY---DIHPYTTFDTMVGAQLIGLNR--VSLASVYNHFT---- 119 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 E +F S + + Y +DVE R L+++L + E Sbjct: 120 -GESIDKKEQFSNWSSK------------ELTESQIFYAAKDVEVLRLLYEKLKNELNKE 166 Query: 185 RDLWLLDQT--------------------------INDRGYRIDLDLVLKLQELIAQERK 218 + + Q I G ID + +++ + ++ + Sbjct: 167 PTIIEILQKSRVAKVFGLESTYAIIEMGFVQELAKIEHTGIGIDTKEIETMKKQLQKKTQ 226 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLA 274 +L + + +L I L + ++ H + Sbjct: 227 EL---AMNFYIKYRIDISSPKKVGEFLENHLNISLPRTDKDNIITDDSVLIEHLDYENEK 283 Query: 275 KD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 ++ R KL+ + E + + R+ GA TGR S QN Sbjct: 284 AKDVISSVLEFRKLHKLQ--EKLSEILEY-NENNRIHPEFWQIGA-VTGRMSSSRPNVQN 339 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +PR +RS + A +G V+AD + IE R+ Sbjct: 340 IPR------------------------------ELRSILKAKDGYVFVIADFSQIELRIA 369 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ I GED++ T + ++ ++KE+R K L Y K Sbjct: 370 AEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKSLS 429 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 A + + + ++ Sbjct: 430 LYAR--------------------------------------NSYGIDMSIEEAKRFREV 451 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + + QG+ + + + + + + Sbjct: 452 FFSTFQGIKAWHERIKKELK--AKGEIRLKTIGGKPMIAYTFTD---------------- 493 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-----------NAT 618 +Q ++L + + Sbjct: 494 ---------------------------AANYPIQGTGAELLKLSVLIFSQELKRAFPSIF 526 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYRK 675 ++V VHDEIV E + V L M K S + ++ E R+ K Sbjct: 527 HEVANVVNLVHDEIVVEAKEDYKEEVSKLLEKSMKKAGSILLNNVKIETEIVINHRWTK 585 >gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 78/271 (28%), Positives = 107/271 (39%), Gaps = 58/271 (21%) Query: 416 AFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 F PI++++K R GK+ ELALGY G +M Sbjct: 1 MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMG--------------------- 39 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A+ L + WR + + Q W D+ E V+ Sbjct: 40 -------------------ALAMGLSEDELPGLVSTWRNANPHITQFWWDVDEAAVRAVR 80 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN---------TAT 584 E V + + + +LPS R+L Y + + Sbjct: 81 ERKETQ------VGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYG KL ENIVQ SRDIL E M K G+ IV VHDE V E P+ SV Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +C +M + PSW GLPL+A+GYE + Y+K Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224 >gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana] gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] Length = 2154 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 91/739 (12%), Positives = 177/739 (23%), Gaps = 187/739 (25%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDE---------------------- 64 I A W+ PV + + + + + D Sbjct: 1500 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 1559 Query: 65 TVMCVA---------HNSLFERILFK-------KTLGIDIPSKRWICTSV-LARTNGLPS 107 + + N + + K + +++ + V + P Sbjct: 1560 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCTRLNL-PEGIRDELVDGSWLMMPPL 1618 Query: 108 ------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L E + + R + ++ Sbjct: 1619 HTSHTIDMSIVIWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQI-RRVAHN 1677 Query: 162 YCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQE 211 C R V TR L L + E L + + G ID++ L+ + Sbjct: 1678 GCCRRVAQTRALCSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARN 1737 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSIL 265 ++ + + L++ +L + LF + + + T K L Sbjct: 1738 ILRDKLRSLEKKAFELAGMTFSLHN-PADIANVLFGQLKLPIPENQSKGKLHPSTDKHCL 1796 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRTGRW 320 +I + L ++ + L G ++ TGR Sbjct: 1797 DLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQT-STATGRL 1855 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVA 379 S Q + G ++ R + L+ A Sbjct: 1856 SIEEPNLQ--------SVEHEVEFKLDKNGRDVSSDADRYKINARDFFVPTQENWLLLTA 1907 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R++A + + I + E D++ AK D VS R K + Sbjct: 1908 DYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYG 1967 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y G A + + Sbjct: 1968 ILYGMG--------------------------------------------ANRLAEQLEC 1983 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + +++++ V + Sbjct: 1984 TSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGY------------------------- 2018 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I RR S +K + + + R+ ++ Q + DI+ M N Sbjct: 2019 -IQTLKGRRRFLSKIKFGNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMINIY 2068 Query: 619 -----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 K I+L VHDE+V E + L M Sbjct: 2069 SAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENA 2128 Query: 655 PSWAKGLPLKAEGYEAKRY 673 S +PL + K + Sbjct: 2129 VSLL--VPLHVKLKVGKTW 2145 >gi|323451403|gb|EGB07280.1| hypothetical protein AURANDRAFT_27651 [Aureococcus anophagefferens] Length = 831 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 98/779 (12%), Positives = 188/779 (24%), Gaps = 180/779 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDD---EPVKLWDRTEQSAMPS 55 +D E L + G +T +++D D + A+ Sbjct: 101 AVDTE-VDDIDLSREGP---VGNGRVTCFTVYSGPDFSYDGEAAGKALFVDCVDA-AVLD 155 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--------- 106 + DE+ V HN F+R + + G+ T +AR + Sbjct: 156 VFAPWFADESRRKVWHNYGFDRHVVENH-GLACRGFA-GDTMHMARLHDSSRLRTHGGDG 213 Query: 107 SSLKNACLAL------------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 SL+ L F E K + + Sbjct: 214 YSLEALSRDLISAGEAKVSMKALFPEFFRKTAFADRANGSASRDAARRGLDILRMQTDDA 273 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDG-------------------ERDLWL------ 189 F Y D ++T ++ L + D + Sbjct: 274 TRDAFVCYAAYDAKSTWQVHDALRRRLERQAWAPMTDDPPRSPETPKTMWDFYERYFVPF 333 Query: 190 --LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-------SSRQTYA 240 + + G +D L E A K + + + Sbjct: 334 GKVLTDMEAAGIYVDAASHLTDVEKAATADKAAALKTFRDWAVERMGPDGALLNPASSKQ 393 Query: 241 LRMYLF-----LITG--IDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 ++ LF TG ++ +L + + L + + Sbjct: 394 IQTLLFGGAMNQKTGEYLETEREFDVDLPPELLPDGDDGASDRTRKLLVRSVGLTPTKYT 453 Query: 293 NTLSEAVSSD------GRLRGTLQFYGASRTGRWS-----------------GCVFQPQN 329 + + + ++D GR YGA+ G G + N Sbjct: 454 TSGAPSCTADVLRELAGRPTDDPPVYGAAHAGFGGGPAGEEACVALDALCNMGSIDTMLN 513 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDC--------------VRSCIIASNGKK 375 ++ + + +R A G Sbjct: 514 TFINPLRLLADDESRVHCSLNLNTETGRLSSRRPNLQNQPALEKDQYFIRKAFRAKEGCA 573 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LVVAD +E R+LA +A + + AF G + T F+ + V + Sbjct: 574 LVVADYGQLELRLLAHVARCESMLVAFREGGCFHSRTAVGMFDHVREAV--------ESG 625 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + L + ++ + + + A Sbjct: 626 AVLLEKGSSP------------EDSDKPLVKDVYASERRRAKTLNFSIAYGKTAHGLAKD 673 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + +AW V K + Sbjct: 674 WGVKQEEAQDMLRAWYDDRPEVEAWQKRTIADAKRTGYTTTLM----------------- 716 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 RR D+ L ++ +Q + D++ M Sbjct: 717 ---------GRRRNLPDILEKNRALQGRGARA---------AINTPIQGSAADVVMMAML 758 Query: 616 NATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGL-PLKAE 666 + GY ++L +HDE++ E P+ + + LM GL PL + Sbjct: 759 KIAESKTLKDLGYTLLLQIHDEVILEGPEQHKEAALAEVTKLMEAPFD-GIGLDPLHVD 816 >gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens] Length = 579 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 71/524 (13%), Positives = 145/524 (27%), Gaps = 120/524 (22%) Query: 168 EATRELFKRLIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 T +L +L E L + + +++ + + K L+ K+L+ Sbjct: 39 RLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELE 98 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSE--GTLKSILSHSNI 270 ++ G LR LF + + + T+ L+ Sbjct: 99 QEAH-FVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTVSEALNALRD 157 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +IL ++ L A G + T G + TGR S Q + Sbjct: 158 LHPLPKIILEYRQVHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGI 215 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + ++ TI+ R+ ++S G + AD + IE R+L Sbjct: 216 SKHPIQITTPKNFKGKEDKILTISP---------RAMFVSSKGHTFLAADFSQIELRILT 266 Query: 391 WIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 ++G+ +K F E + T ++ + P+++V+ R K + A+ Y G + Sbjct: 267 HLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERL 326 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + Sbjct: 327 AAC--------------------------------------------LGVPIQEAAQFLE 342 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 ++ K++ + + + +V RR Sbjct: 343 SFLQKYKKIKDF-------ARAAIAQCHQTG-------------------CVVSIMGRRR 376 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-------TKNG 621 + +Q R+ +VQ + D+ M + Sbjct: 377 PLPRIHAHDQ---QLRAQAERQA------VNFVVQGSAADLCKLAMIHVFTAVAASHTLT 427 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665 +V +HDE++ E D L + + +PLK Sbjct: 428 ARLVAQIHDELLFEVEDPQIPECAALVR---RTMESLEQVPLKV 468 >gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] Length = 848 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 89/500 (17%), Positives = 131/500 (26%), Gaps = 121/500 (24%) Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + G +D ++ + ++ +I+ G I + + Sbjct: 452 LPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGEILTYAGGPI-NLNSPKQVGEL 510 Query: 245 LFLITGIDLVD----MSEGTLKSILSHS----NITQLAKDLILNRLASSGSAILKLNTLS 296 LF G+ ++ T S+L L+L S L Sbjct: 511 LFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVPALLLEHRELSKMLSGFAVPL- 569 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 A S DG + T + + TGR S QNLP Sbjct: 570 AAASRDGVVHSTFE-AQTTGTGRLSSRDPNLQNLP------------------------N 604 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 + C+ A G V AD + IE RVLA ++GE + F G DI+ T A Sbjct: 605 YSELGGQLCRCLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMI 664 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 P D V+KEQR + K + L Y L + Q Sbjct: 665 LGIPADSVTKEQRRMAKTVTFGLLYGMS-----AFGLADRLSVGQA-------------- 705 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + A+ A GV + Sbjct: 706 -------------------------EARGIMDAYFAALPGVREYVDATVAEARRRGYSQT 740 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + + R Sbjct: 741 AYGRIR------------------------------PLDEVATGRQTDRGHAR-----RV 765 Query: 597 LTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVS-ETPDTPYFSVGTLCSLM 651 + VQ + DI M + G +VL VHD IV TP+ L M Sbjct: 766 AINSPVQGTAADITKMAMITVDRELAAAGVPMVLQVHDSIVCRTTPENAEPVGKKLAEFM 825 Query: 652 TKNPSWAKGLPLKAEGYEAK 671 T +PL E K Sbjct: 826 TGAVK--LSVPLAVETKTGK 843 >gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] Length = 340 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 57/440 (12%), Positives = 111/440 (25%), Gaps = 117/440 (26%) Query: 246 FLITGI-DLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 F I + ++ T + +L + IL ++ L ++ Sbjct: 2 FDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLIN 61 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P Sbjct: 62 PRTGRVHTSFNQTV-TATGRLSSSNPNLQNIP------------------------IRDE 96 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I G AD + IE R++A ++ + I AF + DI+ T AK + Sbjct: 97 NGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKI 156 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V + R K G+ + ++ Sbjct: 157 DLKDVDSDMRRKAKTAN--------------FGIIYGISVFGLAER-------------- 188 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + + + GV + Sbjct: 189 ----------------MNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFH 232 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R+ D+ + + + Sbjct: 233 --------------------------RKRFLPDINSRNAVVRGYAERN---------AIN 257 Query: 600 NIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 +Q + DI+ M + ++L VHDE+ P V + Sbjct: 258 APIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIE-EM 316 Query: 654 NPSWAKGLPLKAEGYEAKRY 673 ++ +PLKA+ K + Sbjct: 317 EKAYRMHVPLKADCGWGKNW 336 >gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated bacterium] Length = 206 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 187/204 (91%), Positives = 192/204 (94%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY Sbjct: 1 MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 + ER LWLLDQ INDRGYRIDLD Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLD 204 >gi|62327214|ref|YP_223952.1| DNA polymerase [Phage phiJL001] gi|50059532|gb|AAT69504.1| DNA polymerase [Phage phiJL001] Length = 631 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 97/702 (13%), Positives = 189/702 (26%), Gaps = 131/702 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAM-PSDLL 58 ++ D+ET L G I +A D P + + +L Sbjct: 27 RRVAFDLETY-DPHLKDTGPSVRTG-GHIAGYGFAIDGGPKHYLPVRHENGDNLDAAQVL 84 Query: 59 QYLRDE----TVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGLP---SSLK 110 +Y++D+ V N ++ + GID+P K + + SL Sbjct: 85 RYIKDQFKTFDGELVGANLGYDLD-WAWAEGIDMPLVKAYRDVLIAEPCINENKFFYSLD 143 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + E +K +A A + + Y H+ + G Y + D Sbjct: 144 SVAGD-WLGEQKSKTLMIEAARAYGMRKDSELGSYI-----HLLPARYVGVYGEDDCALP 197 Query: 171 RELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + + + E + + + RG ++D D +++++ +ER+ Sbjct: 198 LRILELQEKEIEQQGIQAVWDLESKVLPVLVRMRQRGVKVDEDRLMEVEIRATKERRDAS 257 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + I ++T + + L ++ + K ++ + Sbjct: 258 DLITRVTGVAVGPEDAMKKGILVDALRAAGHQLNADDAVDKHFIARHEGHCEVTAALGRL 317 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA----------SRTGRWSGCVFQPQNLP 331 L ++ + + +GR+ + A +R GR S Q P Sbjct: 318 RKWDTLRKLAIDPVKNHMV-NGRIHCSFNQMAADKDNGKGTKGARYGRLSCEHVNMQQQP 376 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 ++ + R +G D + E R+L Sbjct: 377 SRDED-----------------------IAPIWRRIYRPDDGGLWAALDYSQQEPRMLVH 413 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 A A + Y + + ++ R K++ L L Y G + Sbjct: 414 FAEICGMPGA-SEAAQKYRDDPDTDNHQMMADMAGISRKEAKIIFLGLCYGMGQEKLCH- 471 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L + + P K + G + + + Sbjct: 472 --DLQLPTKIIE----------------------LKKGPRKGQKMVVAGDEGARLFETFH 507 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 AK K + E G I RR + Sbjct: 508 AKVP----FVKQMENLCKDRATERG----------------------FITTLLGRRCRFK 541 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 +Y T K ++Q S D M A + GY++ L VHDE Sbjct: 542 MGDDGLNYWGTH------------KALNRLIQGSSADQTKAAMVAADEAGYELQLQVHDE 589 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 I + +M +P K + + Sbjct: 590 IDLTV--ESREQAEKIAEIMRTCVE--INVPSKVDVEVGVSW 627 >gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus] Length = 900 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 83/651 (12%), Positives = 176/651 (27%), Gaps = 137/651 (21%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLART 102 L Q L+ + + N+ F R + + G ++ + A Sbjct: 298 AHSQFARDVLFQILKCK-CPVICFNAKDFVRTVLQFFGDDGSWKHVADFVGLDPRIAAWL 356 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGE 161 +A + K L + N L Sbjct: 357 IDPS----DAA-------PSFEDLVAKYLENSITVKVSSTYGNSSRNIVNQNVCANLRIL 405 Query: 162 Y-CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 Y + + +++ E L + + +++ D + + ++ K+L Sbjct: 406 YRLTMGLCSQLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMERTSAVLGSRLKEL 465 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMSE----GTLKSILSHSN 269 +++ G LR LF + L T +++L+ Sbjct: 466 EQEAH-FVAGEQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHLSTSEAMLNVLQ 524 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +IL ++ L A G + T G + TGR S Q Sbjct: 525 NFHPLPKIILEYRQVHKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKRPNIQG 582 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 + + + TI+ R+ ++S G + AD + IE R+L Sbjct: 583 ISKHPIQITKPQNFKGKEDDILTISP---------RTMFVSSEGHTFLAADFSQIELRIL 633 Query: 390 AWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 A ++G+ +K F E + T ++ + P + V+ +R K + ++ Y Sbjct: 634 AHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVY------ 687 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G ++ + + Sbjct: 688 --------GAGKERLAAC------------------------------LGVTVQEAARFL 709 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + K++ + + + R + ++ RR Sbjct: 710 E-FLQKYKKIKDFAQA--------------------------TIARCHQTGYVASIMGRR 742 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------- 620 ++ +Q R+ +VQ + D+ M + Sbjct: 743 RPLPRIRAQDQ---QLRAQAERQA------VNFVVQGSAADLCKMAMIHIFAAVATSPTL 793 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT-----KNPSWAKGLPLKA 665 +V +HDE++ E D+ L M + +PLK Sbjct: 794 TARLVAQIHDELLFEVEDSQVPEFSALVRGTMESLQHVQALELQLQVPLKV 844 >gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio] gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio] Length = 1146 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 73/619 (11%), Positives = 163/619 (26%), Gaps = 137/619 (22%) Query: 77 RILFKKTLGI---DIPSKRWICTSVLARTNGLPSSLK----NACLALNFSEHLTKMEEGK 129 R + + + + + + + A S T + Sbjct: 610 RTVLRHFRDLSWTQVLGCQVMDPQIAAWLLDPADSSSCFQTLLSKHYTHQFTPTTL---- 665 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 + ++ +N +L E + T+ L++ S E+ + Sbjct: 666 -------QPVLEQAKVTQVISNLSLLHKLMEELHYKLR--TQGLWQL---YSGIEQKMIP 713 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + +D + + K E++ + K+L+++ + + LR+ LF Sbjct: 714 VLAAMESYKMHVDKEALKKTSEMLGSKLKQLEQEAHQAAGQKFL-VSSSAQLRLILFEKL 772 Query: 250 -------GIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L + T ++ L +IL ++ + Sbjct: 773 RLHELCENKKLPKTVKQQQSTSETALLQLQKLHPLPKIILEYRQIHKIKTTFVDGILSCT 832 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + T ++ +GR S Q LP+ + T+ Sbjct: 833 RKT-FISSTWNQT-STVSGRLSAKHPNFQALPKLPLQISKKQYIHGKASDIVTVHP---- 886 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFN 418 R+ I G + AD +E R+LA ++ + ++ F + E D + A+ Sbjct: 887 -----RAMFIPREGWTFLSADFCQVELRLLAHLSADPQLLRIFQSPEADAFTMLAAQWKG 941 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 D+VS E R K + ++ Y G + Sbjct: 942 VSEDRVSLEDREQAKRIVYSVVYGAGRERLSG---------------------------- 973 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + ++ ++ V + Sbjct: 974 ----------------ILGVSAEEASRFQDSFLKTYREVPAFIQ---------------- 1001 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 ++ + + RR + L +Q R+ Sbjct: 1002 ----------HTIQHCQSHGFVRSIMGRRRFLPHIHSADWSLR---NQAERQA------V 1042 Query: 599 ENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++Q + D+ M +V +HDE++ E + L M Sbjct: 1043 NFVLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQLDQFAALVKKTM 1102 Query: 652 TKN--PSWA---KGLPLKA 665 + +PLK Sbjct: 1103 ESLQHIEYLNVNLSVPLKV 1121 >gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1] Length = 850 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 87/524 (16%), Positives = 149/524 (28%), Gaps = 126/524 (24%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 LF D TR + L + +G + L + + G R+D LQE +A Sbjct: 427 ALFRLRQGLDAAMTR--HQGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAA 484 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG-----IDLVDMSEGTLKSILSHSN- 269 + ++ + + G + + LF+ G T ++L H Sbjct: 485 RIRAIEAQV-EDMAGTAVNLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLAR 543 Query: 270 -ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+L S + L +A + T + TGR S Q Sbjct: 544 LPGGEVPALLLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQ 603 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEAR 387 N+P G ++ ++ ++ G V AD + IE R Sbjct: 604 NIP------------------------AFGQWAERIKQGLVPVREGNVFVAADYSQIELR 639 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA ++ E ++AF NG DI+ T + F+ + V+ E R + Sbjct: 640 VLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRVA--------------K 685 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G+ A + + ++ Sbjct: 686 MINFGLLYGMS------------------------------AFGLAERLDMPRGEASMIV 715 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 K + GV KD+ + + R Sbjct: 716 KRYFEALPGVQSFLKDIVKEAHAAG--------------------------FARTLAGR- 748 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GY 622 + + L R L +Q + DI + M + + Sbjct: 749 ---IRPVDEVTA--QGRGGLDRV------LVNTPIQGTAADIARKAMVDFDRAFRHDGEV 797 Query: 623 DIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 + L VHD +V E P VG L +M + LPL+ Sbjct: 798 RLFLQVHDSLVCECPAARAEEVGHSLREIMMNAAT--LSLPLEV 839 >gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] Length = 744 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 92/540 (17%), Positives = 163/540 (30%), Gaps = 99/540 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITL-CAYAWDDEPVKLWDRTEQSAMP------- 54 ++ D+ET GV + + I A + ++ +P Sbjct: 136 EIVFDVETT--------GVDVWND--YIVGHVITAIKADVHAYIPTRHKTILPQLSRDLV 185 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLK 110 L + D TV +AHN+ F+ + + GI + W T R +LK Sbjct: 186 NETLRPFYEDPTVGKLAHNAKFDIHMLDR-EGIKLRGLTW-DTQEAMRLLNENEPSFALK 243 Query: 111 NA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N L GK I ++ Y +D + Sbjct: 244 NLVTKYLRIESSTYGDLFGK--IGFDEV----------------DDLEIALAYAAKDGDV 285 Query: 170 TRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L E L + Q + G+ IDLD + + Sbjct: 286 TLKLRNFQREHLAKMPEVLRYYETVEVPLISVVQQMETTGFDIDLDYAEEYGRELKSGLD 345 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L +++++ + L+ L +TG ++ K +L + Sbjct: 346 RLYDELIEELGD--VNINSPAQLKPALERVTG---ESLASTDAKKVLKPLAKKYPVVKKL 400 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSG-CVFQPQNLPRQERS 336 L S +N L E + G+L GA SG QN P++ Sbjct: 401 LEYKDSFKLYSTYINALPELIDQKTGKLYTNFNPNGAKTGRFSSGGTGVNLQNQPKKA-- 458 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 R +A G ++ D + E R LA+ + Sbjct: 459 ----------------------------RKLFVAPEGYAILGGDWSQQEYRCLAYFTQDP 490 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASH 454 + + G+D+Y + A+ F PI++ R KV+ LA+ Y GGA + K Sbjct: 491 KLVDNYFRGDDLYASIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLKD---- 546 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK-DKLIGTACELVKKAWRAK 513 + +++ S FE + + Q + + L R+ Sbjct: 547 -AIGVEKHEAQKFLDSFFERFPVVKEWVESNQKFVKKHGFVWMDHLQRKRRLPDAKDRSA 605 >gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012] gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012] gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74] Length = 449 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 105/264 (39%), Positives = 150/264 (56%), Gaps = 3/264 (1%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDC 147 P +RW T V A +GLP SL C L + K +EGKALI FCK +S Sbjct: 7 PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--ERDLWLLDQTINDRGYRIDLDL 205 T H + W+ F Y D+EA RE++ RL + E LW DQ INDRG +D+ L Sbjct: 67 TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 E + QE+K+L + ++TDG ++++ Q AL ++ G++L DM TL+ + Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 ++ ++ K+L+ RL +S ++ K L + VS DGRLRGTLQF GASRTGRW+G +F Sbjct: 187 ANPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLF 246 Query: 326 QPQNLPRQERSEEILTQTIQALNR 349 QPQNLPR +E + + I+A N Sbjct: 247 QPQNLPRPSLKQEQIDEGIEAPNA 270 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 90/660 (13%), Positives = 186/660 (28%), Gaps = 130/660 (19%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A A + + + L ++L+ E + H E + + +D+ Sbjct: 404 IAVATAT-SAAIVPLPITDTLRAQLARFLKSEHSRTIVHGYK-ELLHLLGAVDLDMDL-P 460 Query: 93 WICTSVLARTN--GLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T + + SLK A + + + + P R Sbjct: 461 MFDTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPSQGTLDFDDDQVEEDPNEHRLR 520 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + D RE + + E + + + G ++D ++ + Sbjct: 521 DLAIIRSLAVTLGPIID---EREQCWLMRAI---ELPVSRVLHGMEHTGAKVDSVRLVSM 574 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSIL 265 ++ A E ++ E + I + + L+ LF G+ ++ T + L Sbjct: 575 RDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAAL 633 Query: 266 SHS--------NITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 L+ +R + I + TL +A + SD R+ T + A Sbjct: 634 QDLYVKSVDNERANGFLGALLRHREINKLKQI--VQTLIDATNTSDERIHTTFEQTVA-A 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 TGR S QN+P A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP------------------------NRNAAGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y T L + F+ + + + + E Sbjct: 787 SYGLAYG-----LSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYT 841 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + G R + + V R R Sbjct: 842 ETIFGR---------RRYFPALHSTNR-----------------------VAREAAERAA 869 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + I ++ + + ++ + + I+ Sbjct: 870 LNAPIQGSAADIMKIAMIRAEQTLAEAHVKS---------------------CII----L 904 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 +V E V L M A +PL ++ Sbjct: 905 QIHDE-----------LVVEIAPGEGDQVTELVRNAMEHAVDLA--VPLDVSCGIGSDWQ 951 >gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus] Length = 848 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 85/648 (13%), Positives = 164/648 (25%), Gaps = 165/648 (25%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLPSSLKNACLALNF 118 V N+ F R + + G D K V A Sbjct: 314 KCPVVCFNAKDFVRTVL-QLYGEDDSWKHVADFVGLDPRVAAWLIDPSD----------- 361 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRL 177 + + K L + Y + T +L +L Sbjct: 362 TAPSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVCMNLKILY-----DLTMDLCSKL 416 Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E L + + + +D + + + L+ K+L+++ G Sbjct: 417 KAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGE 475 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILN 280 LR LF + L+ + T +++L+ LIL Sbjct: 476 QFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILE 535 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S S+ G + TGR S Q + + Sbjct: 536 YRQGSISST-------------------WNQTG-TVTGRLSAKHPNIQGISKHPIKISKP 575 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 TI+ R+ ++S G + AD + IE R+LA ++G+ +K Sbjct: 576 WNFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLK 626 Query: 401 AFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F E + T ++ + PI++V+ R K + ++ Y G + Sbjct: 627 LFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERLAAC------- 679 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + + + K++ + Sbjct: 680 -------------------------------------LGVTVLEATHFLERFLQKYKKIK 702 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + + + RR + Sbjct: 703 DFAQTVIGQCHSAGYVTSIL--------------------------GRRRPLPRICAQDQ 736 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDE 631 +Q R+ +VQ + D+ M + +V +HDE Sbjct: 737 ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 787 Query: 632 IVSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673 ++ E DT L +M + +PLK + + Sbjct: 788 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 835 >gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] Length = 854 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 74/535 (13%), Positives = 136/535 (25%), Gaps = 120/535 (22%) Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLD 204 K D+ + ++ L + D E L + + G ++ + Sbjct: 416 AAESIADPVEIAGQLWRVKNDLSSNIAQYQGLDKLMRDVEIPLIPVLWRMETWGIGLNRE 475 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----- 259 L + ++++ I + G + + LF + + ++ Sbjct: 476 SFNGLDSDLEIRIVEIEDTIAEKG-GERINLNSPKQVAWLLFEKLNMPPIKETKTGYSTD 534 Query: 260 --TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 L+ ++ + +LIL S ++ L A + L ++ T Sbjct: 535 VTVLEELVKMGLPEKEVPELILEHRELSKMRSGFVHPLVSAADENTDLIHGTFESTSTGT 594 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QNLP + L + + +G V Sbjct: 595 GRLSSRDPNLQNLPAFGQWSTRLKEGLVPHK-----------------------DGNIFV 631 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E RVLA + E +AF DI+ T + FN V+ E R KV Sbjct: 632 AADYSQVELRVLAHLCDEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRFAKV--- 688 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G+ + + Sbjct: 689 -----------VNFGLLYGMSSFGLASRL------------------------------G 707 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + + V + + R + + R Sbjct: 708 IGQQEAGDIINRYFRALPKVRDYIEKSYQDARKRGYAVTDFGRIRPLDEVSVNPRDRGAL 767 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 I +Q + DI M Sbjct: 768 KRI------------------------------------AVNTPIQGTAADIARMAMIKF 791 Query: 618 TK-----NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAE 666 K +VL +HD +V E + V L +M + +PLK E Sbjct: 792 YKHFEKRQNVHLVLQIHDSLVCECAAEEKEAVVKDLTDIMESAAT--LSVPLKVE 844 >gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 422 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 141/420 (33%), Positives = 194/420 (46%), Gaps = 56/420 (13%) Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLAS 361 + +F + TGRW+G +FQP NLPR S+ ++ I A+ G D + L S Sbjct: 9 IPYRCRFPISLYTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTS 68 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI------------- 408 +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + + Sbjct: 69 SALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAI 128 Query: 409 ---------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 Y YA +F V+K+QR IGKV ELALGY Sbjct: 129 THGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGY 188 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GG F A+ +DL+ ++ +A W + Sbjct: 189 GGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLSDRAWL 246 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 AC++ K+AWR H + WK L ++ + + M+ + + + Sbjct: 247 ACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMH 301 Query: 562 LPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 302 LPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMP 361 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 362 AIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 422 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 140/420 (33%), Positives = 193/420 (45%), Gaps = 56/420 (13%) Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLAS 361 + +F + TGRW+G +FQP NLPR S+ ++ I A+ G D + L S Sbjct: 9 IPYRCRFPISLYTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTS 68 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI------------- 408 +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + + Sbjct: 69 SALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAI 128 Query: 409 ---------------------------YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 Y YA +F V+KEQR IGKV ELALGY Sbjct: 129 THGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGY 188 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GG F A+ +DL+ ++ +A W + Sbjct: 189 GGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEALQWTKANQRPTFGLSDRAWL 246 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 AC++ K+AWR H + W+ L + + + ++ + + + Sbjct: 247 ACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRAWLRLR 301 Query: 562 LPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 302 LPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMP 361 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 362 AIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix jacchus] Length = 965 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 82/629 (13%), Positives = 164/629 (26%), Gaps = 125/629 (19%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G + K + A S ++ Sbjct: 376 KCPVICFNAKDFVRIVL-QFFGNNGSWKHVADFVGLDPRIAAWLIDPSDAAPSFEDLVEK 434 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + +Y + T EL Sbjct: 435 YCDKSITVKVSSTYGNSSRNIVNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLEL-- 492 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K L+ K+L+++ G Sbjct: 493 ----------PLIPILAVMESHTIQVNKEEMEKTSSLLGARLKELEQEAH-FVAGEQFLI 541 Query: 236 RQTYALRMYLFLITGID-------LVDMS----EGTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + T +++L+ +IL Sbjct: 542 MSNNQLREILFGKLKLHLLSPRNCFPRTGLQKYPSTSEAVLNALRDVHPLPKIILEYRQV 601 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L A G + T G + TGR S Q + + Sbjct: 602 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITKPKNFK 659 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + TI R+ ++S G + AD + IE R+LA ++G+ +K F Sbjct: 660 GKEDEILTICP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQE 710 Query: 405 GEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 E + T ++ + P++ V+ R K + ++ Y G + L + Sbjct: 711 SERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAGKERLAAC-----LGVPVQ 765 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + +++ + Q + ++G L + + Sbjct: 766 EAAQFLESFLQKYKKIKDFAQAAIAQCHQTGYMVSIMGRRRPL---------PRIHARDQ 816 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 L + +L V + +T Sbjct: 817 QLQAQAERQAVNFVVQGSAADLC---------------------KLAMIRVFAAVAASHT 855 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 +R +V +HDE++ E D+ Sbjct: 856 L---------------------TAR----------------LVAQIHDELLFEVEDSQIP 878 Query: 643 SVGTLC-SLMT-----KNPSWAKGLPLKA 665 L M + +PLK Sbjct: 879 ECAALVRRTMESLEQVQVLELQLQVPLKV 907 >gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 2147 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 88/742 (11%), Positives = 174/742 (23%), Gaps = 192/742 (25%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDE---------------------- 64 I A W+ PV + + + + + D Sbjct: 1492 EIHGIAICWNSSPVYYVNLNKDLPNLECVEKQKLIEDAVVGKNEVLATHNMFDVIKSRWN 1551 Query: 65 TVMCVA---------HNSLFERILFK-------KTLGIDIPSKRWICTSVL----ARTNG 104 + + N + + K + +++ + + + Sbjct: 1552 KISKIMGNVNTRKFTWNLKVQIQVLKSPAISIQRCNRLNLA-EGIRD--LELVDGSWLMM 1608 Query: 105 LPS------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 P + L E + + R + ++ Sbjct: 1609 PPLRTSHTIDMSIVTWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQI-RRV 1667 Query: 159 FGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLK 208 C R V TR L L + E L + + G +D++ L+ Sbjct: 1668 AHNGCCRRVAQTRALCSALWKILVSEELLEALTTTEMPLVNVLADMELWGIGVDIEGCLR 1727 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLK 262 + ++ + + L++ +L + LF + + + T K Sbjct: 1728 ARNILRDKLRSLEKKAFELAGMTFSLHN-PADIANVLFGQLKLPIPENQSKGKLHPSTDK 1786 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRT 317 L +I + L ++ + L G ++ T Sbjct: 1787 HCLDLLRNEHPVVPIIKEHRTLAKLLNCTLGSICSLAKLRLSTQRYTLHGRWLQT-STAT 1845 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKL 376 GR S Q G+ + R + L Sbjct: 1846 GRLSIEEPNLQ--------SVEHEVEFILDKNGKDVNSDADSYKINARDFFVPTQENWLL 1897 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R++A + + I E D++ AK VS R K + Sbjct: 1898 LTADYSQIELRLMAHFSRDSSLISQLRQPEGDVFTMIAAKWTGKAEGSVSPHDRDQTKRL 1957 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y G A + Sbjct: 1958 IYGILYGMG--------------------------------------------ANRLAEQ 1973 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + +++++ V + Sbjct: 1974 LECSSDEAKEKIRSFKSSFPAVTSWLNETISFCQEKGY---------------------- 2011 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 I RR S +K + + + R+ ++ Q + DI+ M Sbjct: 2012 ----IQTLKGRRRFLSKIKFGNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMI 2058 Query: 616 NAT-----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651 N K I+L VHDE+V E + L M Sbjct: 2059 NIYSAIAEDVDTTASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKVAAMLLQTSM 2118 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 S +PL + K + Sbjct: 2119 ENAVSLL--VPLHVKLKVGKTW 2138 >gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] Length = 383 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 74/489 (15%), Positives = 144/489 (29%), Gaps = 118/489 (24%) Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + +G++ID+ +L++ E K L+ I+ L + L L+ G+ Sbjct: 1 MGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGL 59 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 + S T + L + LIL + L D ++ T Sbjct: 60 P-KNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQ 118 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 G + TGR S QN+P +R IAS Sbjct: 119 TG-TATGRLSSHSPNLQNIP------------------------VRSPKGLLIRKGFIAS 153 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+ Sbjct: 154 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 210 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 I K + G+ Sbjct: 211 IAKSINF--------------GLVYGMGS------------------------------K 226 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + + + + +A+ + + + E + + RV + + Sbjct: 227 KLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVFDFNGVN 286 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + I Q + D+L Sbjct: 287 DYVKGNYLREG------------------------------------VNAIFQGSASDLL 310 Query: 611 CEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLK 664 GM ++ ++L VHDE++ E + + + ++ + +PL+ Sbjct: 311 KLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEV-YPLRVPLE 369 Query: 665 AEGYEAKRY 673 + AKR+ Sbjct: 370 TSAFIAKRW 378 >gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 1025 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 78/663 (11%), Positives = 173/663 (26%), Gaps = 148/663 (22%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI----------DIPSKRWICTSVL 99 A+ L ++L+ + + V H+ K LG+ + + T + Sbjct: 469 DRALLEMLRKFLQKNSSITVLHDYK-------KHLGLLKSLKLFDSNNSFGTPLLDTRLA 521 Query: 100 ARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + +L+N + G+ + + + + + Sbjct: 522 SYLLEPDFRAETLENMAEHY-LDIQSDEDNLGENEAKQGELDLLIDDETPASEEENNEKQ 580 Query: 157 QLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDL 205 E L ++D E + + + + D G +D+ Sbjct: 581 TQAREAKFLRTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQR 640 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTL 261 + + + + + + +++ G + + L+ LF G+ ++ T Sbjct: 641 LSGMLKQFSAD-AEFAQNMAWKVAGSSVNLQSPKQLQQILFEHFGLKPTRRTKNGSYTTN 699 Query: 262 KSILS--------HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 L +Q L+ +R + I + +L +A D R T Sbjct: 700 AEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI--VQSLIDAAHYDDRRIHTTFEQT 757 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 + TGR S QN+P A +R+ I Sbjct: 758 IAATGRLSSADPNLQNIP------------------------NRNAAGREIRAAFIPGEE 793 Query: 374 KK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 + L+ D + +E R++A + + I+AF +G D + + + P+++V+ +QR+ Sbjct: 794 FEYLMSCDYSQVELRIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHV 853 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K M L Y T L + + F+ + + + + E Sbjct: 854 KAMSYGLAYG-----LSTYGLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKEL 908 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + G R + + E Sbjct: 909 GYTETMFGR---------RRYFPQLSSNNRASREAAERGALNAPIQGTAADI-------- 951 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 + + L R + Sbjct: 952 MKLAMLRVDL--GLREAKVRSRV------------------------------------- 972 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 + ++L E V + M +PL Sbjct: 973 -ILQIHDE---LIL--------EISHGEQEQVENIVRKAMENAVH--LDVPLNVSTGVGV 1018 Query: 672 RYR 674 ++ Sbjct: 1019 DWQ 1021 >gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening disease-associated, Peptide, 207 aa] Length = 207 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 186/203 (91%), Positives = 191/203 (94%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 SKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQYL Sbjct: 3 SKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYL 62 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F EH Sbjct: 63 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEH 122 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 LTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL+ Sbjct: 123 LTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLN 182 Query: 182 DGERDLWLLDQTINDRGYRIDLD 204 ER LWLLDQ INDRGYRIDLD Sbjct: 183 PEERTLWLLDQEINDRGYRIDLD 205 >gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator] Length = 1937 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 91/675 (13%), Positives = 178/675 (26%), Gaps = 109/675 (16%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--------QSAMPSDLLQYL 61 T + L K + + + I A +W+ + + + L + L Sbjct: 1339 TEKKRKLKKSVNYIHGRK-EIRGAAISWESNIAYYISFSNTQDAKISTKEQIT-LLKELL 1396 Query: 62 RDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKNACLALNF 118 D + + L + I R++ + TN + F Sbjct: 1397 SDAALYVKCFAIK-DTYKLLYRCCAISAK-CRFLDPVIAHWLYTNDFEGNFSELVTQY-F 1453 Query: 119 SEHLTKME-------EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + M+ G + + + H+ V Sbjct: 1454 PQGNFIMKRTNSCCNVGPGMDVQNSLPGEFRSAAEAVLTWHMTDSITSKLEELNPV---- 1509 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L D E + + + G ++L + + +I E + L+ L Sbjct: 1510 ----LLHTFRDIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAGRK 1565 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + + L L + S+ L+ L+++ + + Sbjct: 1566 F-NLSSSKEVGQVLGLYKDKKV-STSKAVLEK------CDNPISRLVISWRKLNATKTKI 1617 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L D R+ G + TGR S QN+P+ Sbjct: 1618 VYPLLNLSQEDSRIHG--NCITCTVTGRVSMHEPNLQNVPKD------------------ 1657 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 VR + + G ++ AD +E R+L + + + DI+ + Sbjct: 1658 -FHFEDNNLLVSVRRSFVPALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFKS 1716 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 AK N ++V+ E R K + + Y G K L + + S Sbjct: 1717 IAAKWNNVIEEEVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISETEAQHFLESF 1771 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + ++ L+G R + + Sbjct: 1772 MNAYPGIYKWLDDTLEKAHHNGYVTTLLGR---------RRQLPDLRSTKSSTRAQAERQ 1822 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 + +++ K R + D T +L R Sbjct: 1823 AVNTKVQGSAADIVKKAMIIIEEK----------MRHSFPDSVI-VFPETQGTRKLRRN- 1870 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL- 650 SRD+L + G +VL +HDE++ E V + Sbjct: 1871 --------------SRDML--------QRGGYLVLQLHDELLYEVNSADLKEVAIIIKES 1908 Query: 651 MTKNPSWAKGLPLKA 665 M LP+K Sbjct: 1909 MEDVCQLTVPLPVKV 1923 >gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29] gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29] Length = 607 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 104/680 (15%), Positives = 194/680 (28%), Gaps = 166/680 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLR 62 L +D ET G+ Y+ L + E + + + ++ + L Sbjct: 38 LAVDTETT--------GLDIYSADFRCRLVQFGTQTESW-VLPIEDLEMLGREEVHEALD 88 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112 V N+ ++ + + GI + + + T +LA+ SL+ Sbjct: 89 VLN-KIVMQNASYDLQVLDRCFGIKMESLWPKILDTQILAKLVDPRPFGAGGFGHSLEEL 147 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E E K L+A+ K + + + Y D T Sbjct: 148 IAEFISKEQA---ENVKGLMAKLAKEHKTT--KAKIWSTIDLYHPEYLTYAGMDTVFTAR 202 Query: 173 LFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L PL E + + I+ RG+ +D++ +L + E++ + + Sbjct: 203 ICSALAPLVPDVSRPLVPYEHKISEICSYIDRRGFLLDVEYSQQLADKWLGEQQVWEAVL 262 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLAKD 276 + ++ + A F G + +G +++ + Sbjct: 263 LNEYGIEKVNATEDVAEA---FEELGHKFTAFTDSGKRKVDKGFYADMIAAGGEKAHLAE 319 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ + T + S+ R + A RT R S Q LP + Sbjct: 320 MVQEAKKLGKWRTSWVQTFLDTRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDW- 377 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G + D E RVLA ++G+ Sbjct: 378 --------------------------TVRRCFLADPGHVMASIDYQAQELRVLAALSGDR 411 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I+AF +G D+++ T AF I K E Sbjct: 412 TMIQAFKDGADLHLMTARAAFGDHITKDDPE----------------------------- 442 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + A + + + V + + G Sbjct: 443 ----------------RKYAKTVNFGRVYGGGANTVAEQTGISIETAKQVVDGFDKAYPG 486 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + + L I+ P RRL Sbjct: 487 VTRYSRKLANEAKRNGY--------------------------IINPMGRRLPVD----- 515 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVS 634 R RTY +Q+ SRD+ C+ + + G+ + L +HDEIV+ Sbjct: 516 ------------RSRTY--SALNYQIQSTSRDVTCKALIRLHEAGFTPYLRLPIHDEIVA 561 Query: 635 ETPDTPYFS-VGTLCSLMTK 653 P + LM + Sbjct: 562 SLPAEKANWGAREIARLMAE 581 >gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae] gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae] Length = 2215 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 92/721 (12%), Positives = 188/721 (26%), Gaps = 131/721 (18%) Query: 8 IETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQYLRDE 64 ET + K YA A A+ + + ++ ++ L Sbjct: 1549 FETFVAEWKTKT---NYA-------IAVAYTTDEMIPPPLDDRLPVEERLHNIKSVLEKG 1598 Query: 65 TV--MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE-- 120 V V + + GI + + V + +K+ Sbjct: 1599 DVCSSQVLFDLKPQYKALALGCGITMNGD-FEDPKVADWLLDPGAKVKS-----FHGTVQ 1652 Query: 121 --HLTKMEEGKALIARFCKGSIDSPPYD---CTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + L F GS+ + ++ F + D + Sbjct: 1653 RFTPQESYLLQGLGGCFGVGSLAMTVQNSGSGRMRAALECVLTFHMMEELDKLLEAQGLS 1712 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 D E + + G +++ + + L+E +L + Sbjct: 1713 TAFR--DVEMPSLVTLARMELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLAGHTF-AL 1769 Query: 236 RQTYALRMYLFLITGID-----------LVDMSE---------------GTLKSILSHSN 269 + LFL + + T K +L Sbjct: 1770 TSPDDIAQVLFLELKLPANGDPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLK 1829 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL---RGTLQFYGASRTGRWSGCVFQ 326 +IL S S + L + + RL R + TGR + Sbjct: 1830 KFHALPGVILEWRRISNSLTKVVFPLQKEKVYNPRLNMDRIYGNCDLHTATGRVTFHDPN 1889 Query: 327 PQNLPRQ--------------------ERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 QN+P+ + + R S +R Sbjct: 1890 LQNIPKDFEIEMPTIIGDSPPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRH 1949 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I G L+ AD + +E R++A ++ + + +G+D++ ++ ++ VS Sbjct: 1950 AFIPFQGGVLLAADYSQLELRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSD 2009 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + R K + + Y GAK L + + + + + Sbjct: 2010 KLRQQAKQLCYGMIYGIGAKALGE-----QLGVDEEEGACFIETFKSKYTGMRRYLHTTV 2064 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT-EGFACVVQEGGSISARRVAN 545 DQ + + G R G+ + + V SA + Sbjct: 2065 DQCKKDGFVQTMAGR---------RRYLPGITEGNHHVRCHAERQAVNTTVQGSAADLVK 2115 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + + + + + P++RR D + +S Sbjct: 2116 KAMVSIDQKLQKLF---PATRRSHRQDTQKRSRRSQQPSSPP------------------ 2154 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664 G ++L +HDE++ E V + M + LP+K Sbjct: 2155 --------------RGAYLILQLHDELIYEVRREDVQQVAQIVKHEMENAVKLSVVLPVK 2200 Query: 665 A 665 Sbjct: 2201 V 2201 >gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 704 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%) Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T + A+ K+ ++ RF +D + Sbjct: 194 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 239 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201 Q Y RD L +R L + D E + G +I Sbjct: 240 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245 D +L+ + +E +K + + + + L Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358 Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289 F + + +L ++ A + + ++ + Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 418 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L E ++S G++ +L GA GR+S Q +PR+ Sbjct: 419 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 462 Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R+C + G K ++AD + IE R+ A +A ++ I+A+ Sbjct: 463 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 508 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T + N P +SK R + K + L Y A F+ AS Sbjct: 509 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 560 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A ++ + + + G+ + + Sbjct: 561 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 590 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ R Sbjct: 591 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 616 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 K +Q S DI E + G +V+ VHDEI++E P+ Sbjct: 617 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 663 Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 + L M + + +P AEG A + Sbjct: 664 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62 +D+ET P A I L A D P L+D S + L Sbjct: 3 VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52 Query: 63 DETVMCVAHNSLFERILFK 81 + V HN F+ Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71 >gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii] Length = 2579 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%) Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T + A+ K+ ++ RF +D + Sbjct: 2069 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 2114 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201 Q Y RD L +R L + D E + G +I Sbjct: 2115 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 2173 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245 D +L+ + +E +K + + + + L Sbjct: 2174 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 2233 Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289 F + + +L ++ A + + ++ + Sbjct: 2234 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 2293 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L E ++S G++ +L GA GR+S Q +PR+ Sbjct: 2294 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 2337 Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R+C + G K ++AD + IE R+ A +A ++ I+A+ Sbjct: 2338 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 2383 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T + N P +SK R + K + L Y A F+ AS Sbjct: 2384 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 2435 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A ++ + + + G+ + + Sbjct: 2436 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 2465 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ R Sbjct: 2466 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 2491 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 K +Q S DI E + G +V+ VHDEI++E P+ Sbjct: 2492 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 2538 Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 + L M + + +P AEG A + Sbjct: 2539 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 2575 Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62 +D+ET P A I L A D P L+D S + L Sbjct: 1878 VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 1927 Query: 63 DETVMCVAHNSLFERILFK 81 + V HN F+ Sbjct: 1928 SPRIRKVFHNGQFDLCFLA 1946 >gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] Length = 681 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 59/356 (16%), Positives = 112/356 (31%), Gaps = 40/356 (11%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 + +Y DE + V+ + + + LGI+I + T ++ S Sbjct: 352 PDQKFVENFKKYFEDENINKVSFDIKEDI-VLFNKLGIEIN-FPYDDTMLMHYLIDPSRS 409 Query: 109 LKNACLA----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L + + GK + K + + + Sbjct: 410 SYDLKTFSQAFLKYEVLNEEDLLGKGRNKKSYKDLSEKELGKYLSS--IINAIEDSLDIL 467 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D +++ E L + + G+ D + + K+++ ++ E + L++ I Sbjct: 468 TDKLKELSMYELYKDC---EIKLSKVLAEMEITGFICDKNELEKIKDEVSLELEDLEKVI 524 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 +L + L + LF + ++ ++ T +L I Sbjct: 525 YELAGSEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERY 583 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L +L E + DGR+R T + + TGR S QNLP Sbjct: 584 REMYKLKSTYLESLEECIDEDGRIRSTFKQNV-TATGRLSSTEPNLQNLP---------- 632 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R A K L+ AD + IE RVLA +A + Sbjct: 633 --------------IRTEEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLANDKK 674 >gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 704 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%) Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T + A+ K+ ++ RF +D + Sbjct: 194 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 239 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201 Q Y RD L +R L + D E + G +I Sbjct: 240 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245 D +L+ + +E +K + + + + L Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358 Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289 F + + +L ++ A + + ++ + Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 418 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L E ++S G++ +L GA GR+S Q +PR+ Sbjct: 419 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 462 Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R+C + G K ++AD + IE R+ A +A ++ I+A+ Sbjct: 463 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 508 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T + N P +SK R + K + L Y A F+ AS Sbjct: 509 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 560 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A ++ + + + G+ + + Sbjct: 561 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 590 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ R Sbjct: 591 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 616 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 K +Q S DI E + G +V+ VHDEI++E P+ Sbjct: 617 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 663 Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 + L M + + +P AEG A + Sbjct: 664 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62 +D+ET P A I L A D P L+D S + L Sbjct: 3 VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52 Query: 63 DETVMCVAHNSLFERILFK 81 + V HN F+ Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71 >gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 704 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 92/637 (14%), Positives = 172/637 (27%), Gaps = 184/637 (28%) Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T + A+ K+ ++ RF +D + Sbjct: 194 GPLFDTLIAAKVVEA-----------GVMRTGFKLL---QVVERFLGVLMDKRMQASDWS 239 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKR---------LIPLSDGERDLWLLDQTINDRGYRI 201 Q Y RD L +R L + D E + G +I Sbjct: 240 -SPHLSQEQLLYAARDAAVLLPLQQRLQQKLEAFDLQEVMDVEMRCLRPVVAMELNGMQI 298 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYL-------------- 245 D +L+ + +E +K + + + + L Sbjct: 299 DHARWKELEAHLRREEEKARQRLAAELHVDENTVNFNSQKQMLDALRAIGIPAPPPDRPE 358 Query: 246 ---------FLITGIDLVDMSEGTLKSILSHSNI-------TQLAKDLILNRLASSGSAI 289 F + + +L ++ A + + ++ + Sbjct: 359 SRTRGSRFSFSELPLGFDKNAAEVEDQLLKDTSDGTLARLSQFPAVQALRDYRKAAKAIT 418 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L E ++S G++ +L GA GR+S Q +PR+ Sbjct: 419 TFVDKLPEHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQIPRE--------------- 462 Query: 349 RGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R+C + G K ++AD + IE R+ A +A ++ I+A+ Sbjct: 463 -------------RRFRACFVPSKTVAGRPG-KFIIADFSQIELRIAADLACDERMIEAY 508 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T + N P +SK R + K + L Y A F+ AS Sbjct: 509 RKGEDLHRLTASLILNKPPSLLSKADRQLAKAVNFGLIYGMSADRFRGYASS-------- 560 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A ++ + + + G+ + + Sbjct: 561 ------------------------------AYGVEMSLQEARDFHAKYFSSYPGITRWHR 590 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ R Sbjct: 591 ------RQKAEQPRETRTRAGRRALFEYFAFT---------------------------- 616 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 K +Q S DI E + G +V+ VHDEI++E P+ Sbjct: 617 -------------KSLNYPIQGTSADITKESLVQLQHKLAPLGGRLVMCVHDEIIAEVPE 663 Query: 639 TPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 + L M + + +P AEG A + Sbjct: 664 EKAEEGLRVLIDTMEAAGNKYLRFVPCVAEGAIADSW 700 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62 +D+ET P A I L A D P L+D S + L Sbjct: 3 VDVETTGLDPF----------SARIRLLQLALPDFPALLFDLFALPVSSPALRPVRLLLA 52 Query: 63 DETVMCVAHNSLFERILFK 81 + V HN F+ Sbjct: 53 SPRIRKVFHNGQFDLCFLA 71 >gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 352 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 64/434 (14%), Positives = 115/434 (26%), Gaps = 109/434 (25%) Query: 240 ALRMYLFLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 A+ L+ + T L +++ S ++ Sbjct: 7 AMGEVLYERLKLPHARKTKGKTGYSTDYRELERLAAYHDLPAAVISHRNLSKLKSTYVDK 66 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L+ + DGR+ T + TGR S QN+P Sbjct: 67 LATLIDPADGRVHTTFNQTV-TATGRLSSSNPNLQNIP---------------------- 103 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R+ +A+ + AD + I+ RVLA +G+ +AFA+ +DI+ T Sbjct: 104 --IRTPEGRRLRAAFVAAAEHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTA 161 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ F VS + R + K + + Y L + FE Sbjct: 162 AEIFRVNQGLVSADMRRVAKTINFGIVYGMS-----AFGLAEQLRCSRKEAQTFIDRYFE 216 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VV 532 ++ + +Q L+ L + K E + Sbjct: 217 LYQGVHRFMQEIVEQARRDGWVGTLLQRRRPL---------PEINSGNKMRREFAERTAI 267 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 +A + + + R L +D + + Sbjct: 268 NTPIQGTAADIIKLAAIACD-------------RALREADCRSE---------------- 298 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651 + HDE++ E P VG L M Sbjct: 299 --------------------ALLQI-----------HDELIFEVPQDELAQVGPLIRQAM 327 Query: 652 TKNPSWAKGLPLKA 665 + A +PL Sbjct: 328 EEVMELA--VPLTV 339 >gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior] Length = 2176 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 90/666 (13%), Positives = 175/666 (26%), Gaps = 110/666 (16%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------QSAMPSDLLQYLRDET-VMC 68 K G +++ I A +W+ + + L L D T M Sbjct: 1588 RKSGNYSH-GNKEIRGVAISWESNIAYYISFSNSQESKVSGKEQMALLKDLLYDTTLYMK 1646 Query: 69 VAHNSLFER-ILFKKTLGIDIPSKRWICTSVLA--RTNGLPSSLKN-ACLALN-----FS 119 + + L + GI R++ + TN + Sbjct: 1647 CF--ATKDIYKLLYQCCGITAK-CRFLDPIIGHWLYTNDFERNFNEMVLEYFQQGNVIMK 1703 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + G + AR + A V W + + E L L Sbjct: 1704 RIKSCYYAGPGMDARNSLP-----GEFRSAAEAVLTWHMMDNIMNKLEELNPAL---LYT 1755 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E + + G ++L + +L +++ E + L+ L + + Sbjct: 1756 FREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRKF-NFSSSK 1814 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + L L + S+ L+ L+++ + + + L Sbjct: 1815 EVGQVLGLYKDKKV-STSKTVLEK------CDNPISTLVISWRKLNATKTKMIYPLLNLA 1867 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 D R+RG + TGR S QN+P+ + Sbjct: 1868 QGDSRVRG--NCITCTVTGRVSMHEPNLQNVPKD-------------------FSFADNN 1906 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 VR + G ++ AD +E R+L + + K DI+ AK N Sbjct: 1907 LVVSVRMAFVPVLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIAAKWNNV 1966 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 ++V+ E R K + + Y G K L + + S + Sbjct: 1967 AEEQVTNEMRQRTKQLCYGMIYGMGVKSLAE-----NLCISEPEAQEFLESFMSAYPGIY 2021 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + ++ L+G R + + + Sbjct: 2022 KWLNDILEEAHHDGYVTTLLGR---------RREFPDLSSTKSSVRAQAERQSVNTKVQG 2072 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + ++ K + + S+ +R Sbjct: 2073 SAADIVKKAMISIEDKIRCYF------------PDSAIIFPEVHASRKLRS--------- 2111 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWA 658 N + G +VL +HDE++ E + M Sbjct: 2112 ----------------NLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESMENVCQLT 2155 Query: 659 KGLPLK 664 LP+K Sbjct: 2156 VPLPVK 2161 >gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] Length = 1046 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 86/603 (14%), Positives = 171/603 (28%), Gaps = 121/603 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCKGSID 141 I + + G SL+ + + K + D Sbjct: 546 FGIKCTEYFDILLARYVLG-TESLQEIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSD 604 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + + ++ E F + + L + + + G +I Sbjct: 605 DVVCE---FLSKRTFFIYKLEIIFRNRLQNEQFLNIFDKLES--RLIPVLAQMEETGIKI 659 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D + Q + ++ L DI KL DG + L LF I ++ Sbjct: 660 DKKYFSEFQNELEEKINMLQSDIYKLADGEF-NIDSPQQLGEVLFEKLQIPSGKKTKTGY 718 Query: 259 GTLKSILS-------HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +L + ++ +L A + + + + R+ T Sbjct: 719 STNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKEERIHTTFNQ 778 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 G + TGR S QN+P +R+ ++ Sbjct: 779 NG-TSTGRLSSANPNLQNIP------------------------VRTDDGIRIRTGFVSK 813 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRA 430 G L+ D + IE RVLA ++ + ++A+ + +D++ T K F T D++S+ +R+ Sbjct: 814 EGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEEDEISRHERS 873 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 I KV+ ++ Y L + + T+ FE++ + + + Sbjct: 874 IAKVINFSILYGKTP-----FGLSKELGITVQEASQYITTYFEEYPRVRKFLDIVTETAK 928 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + GT R G+ K++ + ++ Sbjct: 929 LHGFVETFYGT---------RRYISGINATNKNVQAQAVRMAVNTVVQGTAANIIKKVMI 979 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 + K ENI Sbjct: 980 ELHEEF---------------------------------------KNDENI--------- 991 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 + + ++ V DE + + M + K +PLKA G A Sbjct: 992 -KMLLQVHDE---LIFEVRDEF----AKEYMEKIEKI---MENTVKF-KKVPLKANGSVA 1039 Query: 671 KRY 673 K + Sbjct: 1040 KNW 1042 >gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii] Length = 1585 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 69/501 (13%), Positives = 144/501 (28%), Gaps = 103/501 (20%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +++ + + K L+ K+L+++ + LR Sbjct: 1113 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGEPFL-ITSNNQLRE 1171 Query: 244 YLFLITGI---------DLVDMSE--GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 LF + + + T +++L+ +IL + Sbjct: 1172 ILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDFHPLPKIILEYRQVHKIKSTFV 1231 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L A + G + T G + TGR S Q + + ++ T Sbjct: 1232 DGLL-ACTKKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKTLT 1289 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA--NGEDIYV 410 I+ R+ ++S G + AD + IE R+LA ++G+ +K F +D++ Sbjct: 1290 ISP---------RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQEAERDDVFS 1340 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T ++ + P+++V+ R K + A+ Y G + L + S Sbjct: 1341 TLTSQWKDVPMEQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPVQEAAQFLES 1395 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + +++ + Q + ++G L + + L Sbjct: 1396 FLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRPL---------PRIHAHDQQLRAQAER 1446 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + +L V + T Sbjct: 1447 QAVNFVVQGSAADLC---------------------KLAMIHVFTAVAASRTL------- 1478 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 +R +V +HDE++ E D L Sbjct: 1479 --------------TAR----------------LVAQIHDELLFEVEDPQIPECAALVRR 1508 Query: 650 LMT-----KNPSWAKGLPLKA 665 M + +PLK Sbjct: 1509 TMESLEQVQALELQLQVPLKV 1529 >gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] Length = 602 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 105/677 (15%), Positives = 196/677 (28%), Gaps = 163/677 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D ET G+ Y++ + E + A+ + Sbjct: 37 ILGLDSETT--------GLDIYSKGFRCRTVQFG-SPEEGWVIPVERG-AVFREAAIAAL 86 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNA 112 V HN+ ++ +F K LG+ + + + T +LA SL+ Sbjct: 87 RAADRFVLHNASYDLQVFDKCLGVPMEELWPKVVDTKILAHLVDPRGRKEGGTGHSLEEL 146 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K L+ K + + + + Y D Sbjct: 147 TRHY-LDADVADTV--KTLMTDLAKEEKTTKANVWKKVSLDNP--RYQLYAGMDPILACR 201 Query: 173 LFKRLIPLSD--------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L ++L PL ERDL + + G+ +D+D KL + + E Sbjct: 202 LRQKLSPLVPVSARGLVGYERDLAEVCSVMERTGFLLDVDYTRKLSTRLRLDESVASEIA 261 Query: 225 VKLTDGIIRSSRQTYALRMYLFLIT-GID--LVDMSEGTLKSILSHS--NITQLAKDLIL 279 + + T + L + I + ++L+ + + A+ +I Sbjct: 262 LSYGCE---NVNSTDQVADVLEQMGAWIPGRTPTGKKQVNDTLLAQLAKDGNEFARSVID 318 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ + V DGR ++ A RT R S Q LP + Sbjct: 319 A-KKAGKWRKTWVDRFLQTVDPDGRCHASINPLQA-RTARMSITEIPAQTLPAGDW---- 372 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R C +A G+ + D E RVLA ++G+ I Sbjct: 373 -----------------------MIRRCFLADEGELIASVDYQAQELRVLAALSGDPTMI 409 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AFA G+D+++ T AF I K E Sbjct: 410 RAFAEGQDLHLLTARAAFGDHITKDDPE-------------------------------- 437 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + + L A + V + + GV Sbjct: 438 -------------RKYAKVVNFGRVYGGGAKTVSEQTGLGFMAAKQVVDGFDKAYPGVRV 484 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 L L E Q IV P+ R L + Sbjct: 485 LSHKLQEEAVKSGQ--------------------------IVTPTGRVLPVDQDR----- 513 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETP 637 ++Q+ SRD+ + + + G+ ++ L +HDE+++ P Sbjct: 514 --------------AYAALNYLIQSTSRDVTGKALIRLHRAGFGPNLRLPIHDEVLASVP 559 Query: 638 DTPYFS-VGTLCSLMTK 653 + +M + Sbjct: 560 AAKARWGANRIAEIMRE 576 >gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool] Length = 2215 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 94/655 (14%), Positives = 176/655 (26%), Gaps = 190/655 (29%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 E + G+ + T + A+ K+ ++ RF Sbjct: 1690 EIGALQSDGGVYVSG-PIFDTLIAAKVVEA-----------GVMGTGFKLL---QVVERF 1734 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERD 186 +D + Q Y RD L +RL + E Sbjct: 1735 LGVLMDKRMQASDWS-SPHLSQEQLLYAARDAAVMLPLQQRLQRKLEAYDLQEVMDVEMR 1793 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK--LTDGIIRSSRQTYALRMY 244 + G +I+ +L+ + +E K + + D + + Sbjct: 1794 CLRPVVAMELNGMQIEHARWKELEAHLRKEEVKARKRLAAELHVDETTVNFNSQKQMLDA 1853 Query: 245 LFLITGIDLV---------------------------------DMSEGTLKSILSHSNIT 271 L GI + + T L+ Sbjct: 1854 LR-AIGIPSPPPDRPASRSRGARPSAFSEQRGLGFDQPAELEDTLLKDTSDGTLARLT-Q 1911 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 A + + ++ + ++ L + ++S G++ +L GA GR+S Q + Sbjct: 1912 YPAVQALRDYRKAAKAITTFVDKLPQHINSVTGKIHCSLHQCGAGS-GRFSCDSPNLQQI 1970 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA------SNGKKLVVADLAGI 384 PR+ R+C + G K ++AD + I Sbjct: 1971 PRE----------------------------RRFRACFVPSAKVAGRPG-KFIIADFSQI 2001 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+ A +A ++ I+A+ GED++ T + N P +SK R + K + L Y Sbjct: 2002 ELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQLAKAVNFGLIYGMS 2061 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 A F+ AS A ++ Sbjct: 2062 ADRFRGYASS--------------------------------------AYGVQMTPQEAR 2083 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + + G+ + + ++ R Sbjct: 2084 AFHAKYFSSYAGITRWHQ------RQKAEQPRETRTRAGRRALFDYFAFT---------- 2127 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 K +Q S DI E + Sbjct: 2128 -------------------------------KSLNYPIQGTSADITKESLVRLQDKLAPL 2156 Query: 621 GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 G +V+ VHDEI++E P+ + L M + + +P AEG A + Sbjct: 2157 GGRLVMCVHDEIIAEVPEDKAEEGLRILIETMEAAGNKFLRFVPCVAEGAIADSW 2211 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 13/79 (16%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQYLR 62 +D+ET G+ Y A + L A D P L+D S + L Sbjct: 1530 VDVETT--------GLDPY--SARVRLLQLALPDFPTLLFDLFALPVSSPSLRAVRLLLA 1579 Query: 63 DETVMCVAHNSLFERILFK 81 + V HN F+ Sbjct: 1580 SPRIRKVFHNGKFDLCFLA 1598 >gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6] gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6] Length = 628 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 109/696 (15%), Positives = 190/696 (27%), Gaps = 144/696 (20%) Query: 14 QPLPKVGVWAYAEQAVITLCAYAWDDEP----VKLWDRTEQ----SAMPSDLLQYLRDET 65 L G I + A + P V D ++ ++ DL L + Sbjct: 37 LNLTATGPDPLCH--EIQRISLALPNAPSSSTVYTVDIADRPELKESIIGDLAGLLENGR 94 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-------RTNGLPSSLKNACLALNF 118 + H+S F + G + + + + K N Sbjct: 95 IKKTLHDSKFVLSFIRARAGRKLNFCSIFDVMLASQICWSGYYYLTPSGNPK------NP 148 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 +L R +D A + D+ A L Sbjct: 149 WTKRLVDHSLASLAERHLGIILDEEGCPAQGAAALLPLH--------DILADLLAKNDLQ 200 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI------- 231 ++D E + + G +D L + E + + Sbjct: 201 RVADLEFRAAIALVEMEISGIGLDSSGARDLIDQEEDEIIDQIWRMQDEAERKGFVTVSF 260 Query: 232 -------IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + + +L G + LKS+ + A+ L+ R S Sbjct: 261 DGKRLCCYLNPDRQEDVMAFL-AKRGYRPANTKAEVLKSLA--AAGCSFAEALMRYRHLS 317 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L LN E V DGR+ S TGR S Q +PR Sbjct: 318 YNL--LFLNKWLEKVHPLDGRVHPQYFQIP-SSTGRISSRHPNAQQIPR----------- 363 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G + +R + GK+ V ADL+ IE R++A I+G++ +AF Sbjct: 364 -------------RGDDAPAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFI 410 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQF 462 G D++ T ++ TP ++V+ QR K M L Y G AK + + S G + Sbjct: 411 KGIDLHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQWRILSDYGEFICLD 470 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + F + Sbjct: 471 ETEERLERFFCSYPGVREWQ---------------------------------------- 490 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + N R +L RR ++ + Sbjct: 491 ------KMQLSQMSYTMQHHFHNCVRGFFSLPLTATRTIL--GRRRIWPRFGAGITASKF 542 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 ++ Q D++ M + I+ ++HDEI+ E P+ Sbjct: 543 -------------QMYNTPCQGTGADLIKLVMAEVYEKLSDEEARIIGSIHDEIILEVPE 589 Query: 639 TPYFS-VGTLCSLMTKN-PSWAKGLPLKAEGYEAKR 672 L +M + +P+KAE + Sbjct: 590 DRAEEYAARLKEIMERIGSEMLYPVPVKAEAKVMRN 625 >gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis] Length = 2435 Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats. Identities = 89/736 (12%), Positives = 189/736 (25%), Gaps = 150/736 (20%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHN----------------- 72 + A W + ++ ++ L ++ N Sbjct: 1750 VVGLAVCWGGKDAFYISLQQKLKEQIEMSASLAPPSLD---QNLTVAERLEHLQSCLQDS 1806 Query: 73 ------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNFS 119 +++E K GI + + V SL N + Sbjct: 1807 KRDFSLAMYEFIQHYKTLLKACGISLAG-SFEDPKVACWLLDPGSNERSLHNMVASFLPE 1865 Query: 120 EHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEATRELFKR 176 E + G + S D V + L + +++F + Sbjct: 1866 ELFLLDKIGTGQGNQSIGLNASADHSGRYRAAVESVLVFHLMDKLSALLQKDNLQDIFHK 1925 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E + G + ++ + + + I +L G S Sbjct: 1926 M------EMPNQYCLALLELNGIGFSTAECETQKHVMEAKLSETENQIYQLA-GHSFSLT 1978 Query: 237 QTYALRMYLFLITGIDLV---------------------------DMSEGTLKSILSHSN 269 + LFL + T K +L Sbjct: 1979 CPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTGRAVVNGNRVRLSKQFSTTKGVLEKLK 2038 Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 LIL + + + L + R+ Q A TGR S Sbjct: 2039 ALHPLPGLILEWRKITNAITKVIFPLQREKLLNPILGMERIYPVSQTNTA--TGRISFRE 2096 Query: 325 FQPQNLPR--------------------------QERSEEILTQTIQALNRGETIADPLG 358 QN+P+ + R+ + + N E + Sbjct: 2097 PNIQNVPKDFEIEMPILVEESPPTQRQHKMFNAPRNRNRKSSVLPCEPKNLTERLTSKKI 2156 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 + +R + G ++ AD + +E R+LA + + ++A +G D++ + A+ Sbjct: 2157 PFAVSMRHAFVPFPGGLILAADYSQLELRILAHLCCDRRLLQALNDGADVFRSIAAEWKM 2216 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + V + R K + + Y GAK + + + + S + Sbjct: 2217 MAPEAVGNDLRQQAKQICYGMIYGIGAKSLGE-----QMGVDEKDASYYIDSFKSRYPGI 2271 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + + ++G L R + + V Sbjct: 2272 QKFLRETVKKCNQDGFVQTIMGRRRYLPTI--RESNPYKKA------QAERQAVNTVVQG 2323 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 SA + + +++ LPS+ + + + + R+ Y Sbjct: 2324 SAADIVKTATVNIQKQLE----ALPSAVKSFEHLCSSTQNKWSGMAEK--RQIMYP---- 2373 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657 K+G +L +HDE++ E + V + M Sbjct: 2374 --------------------KHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEMEHAVK- 2412 Query: 658 AKGLPLKAEGYEAKRY 673 + L + + Sbjct: 2413 -LSVKLSVKVKVGSSW 2427 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 114/215 (53%), Gaps = 5/215 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ EPVK+WD T+ MP DL YL D Sbjct: 10 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K L ID+P R T V A +GLP +L + C N + Sbjct: 69 PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128 Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 TK +EGKALI FCK +S T H + W F Y D+ A RE+++ L Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 ++ E LW LDQ IN RG +D++L + Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223 >gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia guttata] Length = 2588 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 89/736 (12%), Positives = 180/736 (24%), Gaps = 143/736 (19%) Query: 30 ITLCAYAWDDEPVKLW------------------DRTEQSAMPSDL---LQYLRDETVM- 67 + A W + + + L QYL+ +T Sbjct: 1896 VVGLAVCWGGKDAYYISLQQTQDQTEISLSLAPPPLDQSLPVTERLNHLQQYLQKKTKKE 1955 Query: 68 --CVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLALNF 118 + +++ GI + + V +L + Sbjct: 1956 RSLI----MYDFIQHYKTLLMACGISLEG-SFEDPKVACWLLDSGSKEHTLHSMVTNFLP 2010 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 SE G G S +++ +F + E +E + Sbjct: 2011 SELPLLEGVGTGQ-GVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENLTDVF 2069 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E + G ++++ + +++ +L G S Sbjct: 2070 S--KVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLA-GHSFSLTSP 2126 Query: 239 YALRMYLFLITGIDLV---------------------------DMSEGTLKSILSHSNIT 271 + LFL + T K +L Sbjct: 2127 DDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLKTL 2186 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD---GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + G R + TGR S Q Sbjct: 2187 HPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPISQTHTATGRVSFTEPNIQ 2246 Query: 329 NLPR------------------------------QERSEEILTQTIQALNRGETIADPLG 358 N+PR + R + + + Sbjct: 2247 NVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEERGI 2306 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 S +R + G ++ AD + +E R+LA ++ + I+A G D++ + A+ Sbjct: 2307 QFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAEWKM 2366 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + V + R K + + Y GAK + + + S + Sbjct: 2367 IDPEAVGERTRQQAKQICYGIIYGIGAKSLGE-----QMGIDENEAANYIESFKSRYTGV 2421 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + ++G R + Sbjct: 2422 QKFLRETVRSCRRDGFVQTILGR---------RRYLPAIKDPNPYSKAHAERQAVNTTVQ 2472 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + V + + + PS + + S+ T +L R+R G Sbjct: 2473 GSAADIVKTATVNIQKRLEAF---PSVFKSH---GHLESSFQRDKTGRLSRKRNTG---- 2522 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657 M + + G+ I L +HDE++ E + V + M Sbjct: 2523 ---------------MLHPIRGGFFI-LQLHDELLYEVAEDDVIQVAQIVKREMENAIK- 2565 Query: 658 AKGLPLKAEGYEAKRY 673 + L + + Sbjct: 2566 -LSVKLDVKVKIGPSW 2580 >gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa] gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa] Length = 1001 Score = 193 bits (490), Expect = 9e-47, Method: Composition-based stats. Identities = 104/677 (15%), Positives = 189/677 (27%), Gaps = 148/677 (21%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------SAMPSDLLQYLRDETVMCVAHN 72 G+ I A +E D L LR E + Sbjct: 438 GLGIAIYNRDIIGIALCALNEECVYIDFRPNRISEIEIYERIETLDNILRSEQQKYI--- 494 Query: 73 SLFERILFKKTL----GIDIPSKRW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 ++ + F ++L G P + IC L+ +S S + Sbjct: 495 --YDLVSFSRSLRYLRGTTYPPSLFNHCICIQTLSYLAHYRAS-D------GNSAISFQD 545 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 L+++ + T A F D + + + + E Sbjct: 546 -----LVSQLTSPERAIILRNATSRLQA-AISAFICLHMHDDLLSAAIRLSSMKSVELEL 599 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 +L I G D + L + Q+ ++ ++ + + L Sbjct: 600 QSVVLFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIPF-NFGSAAEISQIL 658 Query: 246 FLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 F+ I ++S T K +L +LIL S + L +L ++ S Sbjct: 659 FVRLQIPPPNLSTGRHYSTNKFVLQQLAPNYPIINLILEWRRISTALTTSLPSLLKSCCS 718 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+R F S TGR QN+ + + Sbjct: 719 DGRIRT--NFITYSCTGRVLTENPNVQNVQKDGIID-----------------------G 753 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +RS IA G+ L+ +D +E R+LA ++ + I F D + K NT Sbjct: 754 FSIRSLFIAPKGRILLSSDYRQLEMRMLAHLSADSQLISLFLAEGDFFEIITNKW-NTNE 812 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 K R K + + Y G+ Sbjct: 813 TLPVKVDRNKVKQLCYGIIYGMGSLSLS-------------------------------- 840 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + + + ++ + V + Sbjct: 841 ------------KELGIQKQHAQQMIISFFQQFPKVRTWMDKI----------------- 871 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 + + D + RR + S L T ++Q R+ Sbjct: 872 ---------LAVCRADGFVSTLLGRRRFLPQI---NSMLQTESAQAERQAI------NTC 913 Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656 +Q ++ + N KN IV+ +HDE++ ET ++ SV + MT Sbjct: 914 IQGSVAELFKMALLNLQKNLLGTNSSIVMQMHDEVLVETDESSVASVVEIIKHSMTSVMP 973 Query: 657 WAKGLPLKAEGYEAKRY 673 +PL + K + Sbjct: 974 -NLRVPLAVKISSGKNW 989 >gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii] gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii] Length = 2508 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 85/612 (13%), Positives = 152/612 (24%), Gaps = 167/612 (27%) Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 TR D + L PL + E L + + G + ++ Sbjct: 1963 PTRQADACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRILARMEGEGIALAPQVL 2022 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSE 258 + + ++L + LF + Sbjct: 2023 KDQRGPLEARLRQLAAKAHLAAGMTFD-LNSPKDVSEVLFQHLNLPPPPCAFSNQNQRHP 2081 Query: 259 GTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSE------------------- 297 T K +L L+L+ + TL Sbjct: 2082 STKKEVLEELEESTHHPIIRLLLDYRTLHKLLTGFVETLYHTAKGQWQRQQHELERCQGQ 2141 Query: 298 -------------AVSSDG--------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 AV G RL GT + ++ TGR + Q +PR Sbjct: 2142 GQQPQRGGAATGGAVKPGGPGPVPDVIRLCGTW-LHTSTATGRLAMDEPNLQTVPRPVEY 2200 Query: 337 EEILTQTIQALNRGETIADPLGLASDCV----------------------RSCIIASNGK 374 + +Q QA A G + RS +A G Sbjct: 2201 TFMASQLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSVTLHFNLRSAFVAPPGY 2260 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANG-EDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 ++ AD IE R++A + + N +D ++ A+ P+++V+ E R K Sbjct: 2261 MVLAADYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWKKVPVEQVTPEVRVQAK 2320 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + + Y G A Sbjct: 2321 RLAYGMLYGMGTNTL--------------------------------------------A 2336 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + + +R V + +++ E + Sbjct: 2337 QELGVSVAEAGELSDNFRRAIPSVDRWMREVVEAVRSCGYTTTLM--------------- 2381 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSY-LNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 RR YS + S +A +Q R+ + Q + D++ Sbjct: 2382 -----------GRRRYYSRINERASKDARSARAQAERQA------VNTVCQGSAADLIKA 2424 Query: 613 GMK----NATKNGY----DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP---SWAKGL 661 M G +VL VHDE+V E + + L + A + Sbjct: 2425 AMVTLQRRLEAEGLAPHVRMVLMVHDELVFEVAEQLLPAAARLV----QAVLEGEVALSV 2480 Query: 662 PLKAEGYEAKRY 673 PL + + Sbjct: 2481 PLPVKLSAGPSW 2492 >gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5] gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5] Length = 856 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 80/631 (12%), Positives = 165/631 (26%), Gaps = 158/631 (25%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTK 124 +A+N E + + +LA L SL L Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPF-PTCYEDIGILAWLENCYLEPSLHALGQYLGEQ----- 407 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 G L + A + Y ++EL+ L Sbjct: 408 ---GYDLAGLEDTE--------ALFKASINARLILKAYKHYKEVLSQELWGIAHKLEYPL 456 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L T+ G+ +D+ LQ+ + + L++ + + + + + Sbjct: 457 L---ELLYTMQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQV 512 Query: 245 LFLITGIDLV--DMSE---GTLKSILSHSNITQLAKDL-----------ILNRLASSGSA 288 L+ G++ + T ++ L T ++ +LN Sbjct: 513 LYEHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYREIFKLQ 572 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + + + G++ T + + R S QN+P Sbjct: 573 STYVEPFLK-RHTQGKIHTTFYQNK-TASSRLSSANPNLQNIP----------------- 613 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + IAS G L+ D + IE R+LA + + +KAF EDI Sbjct: 614 -------IRHDLGRKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ T F ++ +R I K + L Sbjct: 667 HLNTATALFG----NQAQAKRPIAKAINFGLI---------------------------- 694 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + A ++ + + + K + ++L Sbjct: 695 ----------------YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARI 738 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 Q + R + + + D Sbjct: 739 LQEGQVTTLLGHVRRFSF--------------------KQASPKLHAD------------ 766 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDTPYFS 643 Y + + Q + D++ M + +++ VHDE++ E + Sbjct: 767 ----YLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822 Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +LM +PL+ A + Sbjct: 823 LQQEIKTLMENIYP--LRVPLECHASIASNW 851 >gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1] gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1] Length = 856 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 81/631 (12%), Positives = 166/631 (26%), Gaps = 158/631 (25%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTK 124 +A+N E + + +LA L SL L Sbjct: 355 KLIAYNLK-EVCSLLRGYNFPF-PTCYEDIGILAWLENCYLEPSLHALGQYLGEQ----- 407 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 G L + A + Y ++EL+ L Sbjct: 408 ---GYDLAGLEDTE--------ALFKASINARLILKAYKHYKEVLSQELWGIAHKLEYP- 455 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L L T+ G+ +D+ LQ+ + + L++ + + + + + Sbjct: 456 --LLELLYTMQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPL-NVNSSRQWAQV 512 Query: 245 LFLITGIDLV--DMSE---GTLKSILSHSNITQLAKDL-----------ILNRLASSGSA 288 L+ G++ + T ++ L T ++ +LN Sbjct: 513 LYEHLGLESKGIKKGKIGLSTNEASLKALQATYAQSEVRGVCVGVLLTKLLNYREIFKLQ 572 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + + + G++ T + + R S QN+P Sbjct: 573 STYVEPFLK-RHTQGKIHTTFYQNK-TASSRLSSANPNLQNIP----------------- 613 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + IAS G L+ D + IE R+LA + + +KAF EDI Sbjct: 614 -------IRHDLGRKIARGFIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDI 666 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ T F ++ +R I K + L Sbjct: 667 HLNTATALFG----NQAQAKRPIAKAINFGLI---------------------------- 694 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + A ++ + + + K + ++L Sbjct: 695 ----------------YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARI 738 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 Q + R + + + D Sbjct: 739 LQEGQVTTLLGHVRRFSF--------------------KQASPKLHAD------------ 766 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDTPYFS 643 Y + + Q + D++ M + +++ VHDE++ E + Sbjct: 767 ----YLREGVNTLFQGSASDLVKLAMLAIYQKYESRADIKMLVQVHDELILEVSEIEARE 822 Query: 644 V-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + +LM +PL+ A + Sbjct: 823 LQQEIKTLMENIYP--LRVPLECHASIASNW 851 >gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens] gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens] Length = 1492 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 76/661 (11%), Positives = 168/661 (25%), Gaps = 127/661 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 + A W + + + + D+ + + + + +A+N + + + L ++I Sbjct: 932 VVGIAICWGGFDSYFVNLGDCNTLQDDVANNIENSSAIKIAYNLKEQYKILTRHLQVEIK 991 Query: 90 SKRWICTSVLARTNGLPSS-----------LKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + + L + L+ G L Sbjct: 992 GTSY-DPKIGIWLLDQDAHEKTFHAIISNYLADEAALLDCVIGTCTDGNGIGL-----HY 1045 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + + VEA + + S+ E + G Sbjct: 1046 NSQTSGRRRACIE-----SVLVHKLHSVVEAMLKERELYKLYSEIEMPTIRTLCWLELDG 1100 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + E + ++ ++ G + L+ Sbjct: 1101 IGFCMDECQQQIERLQYRLHYIE-EMAYRIAGRSFQLTSPTDIAHVLYTELN-------- 1151 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----AVSSDGRLRGTLQFYG 313 T K +L + L+L + + L L S R+ T Q + Sbjct: 1152 -TCKDVLQKLSQIHPLPALVLEWRRINSALTKTLYPLKRYSKYCHKSKTYRVYPTCQMHT 1210 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A TGR S QN+P+ +++ +R+ I +N Sbjct: 1211 A--TGRISISDPNLQNIPKDFDIAKMVR----------------------MRNIIGCTND 1246 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + +E R++A ++ + + +G D++ ++ P D VS EQR K Sbjct: 1247 TILLSADYSQLELRLIAHLSEDKQLSRVLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAK 1306 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 M + Y MA + + + + + Sbjct: 1307 QMCYGIIYGMTP-----MALGEQMKVPEEQAATFMHTFKSRYNGIAKFIEKTLVSCRREG 1361 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 ++ + L + Sbjct: 1362 YVSTIMNRK---------RLLPNIRSTNARLRSHAERQAINTTVQGSAADLV-------- 1404 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 ++ ++ + + + K Sbjct: 1405 -------------KIAMINIHKRIDEMCANRANRDNAE-WKPKF---------------- 1434 Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKR 672 VL +HDE++ E SV + M + L+ + K Sbjct: 1435 -----------VLQMHDELLFEIKANELESVSLIVKQEMENALK--LRVKLEVKIKTGKY 1481 Query: 673 Y 673 + Sbjct: 1482 W 1482 >gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera] Length = 2091 Score = 191 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 94/722 (13%), Positives = 176/722 (24%), Gaps = 189/722 (26%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-------------------LR-----DE 64 I A W++ PV + + + L Sbjct: 1422 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1481 Query: 65 TVMCVA---------HNSLFERILFKK-----------TLGIDIPSKRWICTSVLARTNG 104 V + N + + K L + I + Sbjct: 1482 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELID---NSYLML 1538 Query: 105 LP----SSLKN--ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 P L L E + + + + + R + + Sbjct: 1539 SPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQ-TRRA 1597 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 C R V TR L L L E L + + G +D++ ++ Sbjct: 1598 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1657 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLK 262 + ++ ++ + L+++ +L + L+ + + T K Sbjct: 1658 ARNVLGKKLRHLEKEAYELAGMTFSLYTA-ADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1716 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRT 317 L +I + L ++ + L G ++ T Sbjct: 1717 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQT-STAT 1775 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S Q E + + + R + S L Sbjct: 1776 GRLSMEEPNLQ-------CVEHVVEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWLL 1828 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R++A + + + + D++ AK P V ++R K + Sbjct: 1829 LTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRL 1888 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y G A + Sbjct: 1889 VYGILYGMG--------------------------------------------ANTLAKQ 1904 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + E +++R+ GV L E AC ++G + + Sbjct: 1905 LECSLGEAEEKIRSFRSSFPGVASW---LHEAVACCCKKGYVKTLK-------------- 1947 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R+ S +K S + +I Q + DI+ M Sbjct: 1948 ---------GRKRFLSKIKFGTSKEKLKARRQ---------AVNSICQGSAADIIKIAMI 1989 Query: 616 NAT-----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 N K I+L VHDE+V E + G L M Sbjct: 1990 NIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTM 2049 Query: 652 TK 653 Sbjct: 2050 EN 2051 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 189 bits (481), Expect = 9e-46, Method: Composition-based stats. Identities = 107/693 (15%), Positives = 175/693 (25%), Gaps = 182/693 (26%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +D+ET ++A + L + A L D + L L T Sbjct: 917 LDLETTGL---------SHARD-RVRLLSLATPSG-TFLVDLFALPDPAAALAPLLEALT 965 Query: 66 -VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNAC-LALNF 118 V V N F+ + + R T + ++ SLK+ L Sbjct: 966 AVEVVGQNLGFDLPFLMR---LGFVPGRVRDTMLASQVLHAGNRTTGHSLKDLAHRHLGL 1022 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K L T Y RD E L++RL Sbjct: 1023 ELD-------KGL---------------QTADWSGPLTDAHLGYAARDAELPLALWERLA 1060 Query: 179 PLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 P + E G D + +A + + + D Sbjct: 1061 PELAAAHLTGTAEAEMAALPAVAWAARHGVGFDRPAW----DAVAADTEACAARAREHLD 1116 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR--LASSGS 287 ++ ++ + + + + + L S + L R A+S Sbjct: 1117 ELLPNAGNLFGVTNWNSVDEVTAAFAAAGVALTSTGDDALAAVAHPAAALLREHRAASKL 1176 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + V+ DGR+ + GA +GR S Q LPR Sbjct: 1177 SGTYGRGWLRHVADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRD-------------- 1222 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R C + G+ LV AD + IE R+ A I G+ + A+ GED Sbjct: 1223 --------------PRFRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGED 1268 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ TT V+K R + K + L Y GAK A+ Sbjct: 1269 LHTTTARAVLGKT--DVTKADRQLSKSLNFGLLYGMGAKALAAYAASN------------ 1314 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 L + A+ + G+ + + Sbjct: 1315 --------------------------FGVALTEGEAADHRDAFFRTYPGLRAWHRKV--- 1345 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + + RR V + Sbjct: 1346 --------------------------PDGIIQTRTLAGRRRVGVGAFTEK---------- 1369 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYF 642 VQ D L + VL VHDEIV E + Sbjct: 1370 ----------LNTPVQGTGADGLKRALALLWARRNSCPDAFPVLLVHDEIVVECSEERRD 1419 Query: 643 SVGT-LCSLMTKNP-SWAKGLPLKAEGYEAKRY 673 + M +P++ E + + Sbjct: 1420 EAIAWVRDAMRDGMAPLIDPVPVEVEVSAGRTW 1452 >gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7] gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11] Length = 237 Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQ 236 >gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13] Length = 237 Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQ 236 >gi|302855051|ref|XP_002959026.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f. nagariensis] gi|300255592|gb|EFJ39887.1| hypothetical protein VOLCADRAFT_108435 [Volvox carteri f. nagariensis] Length = 2736 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 74/542 (13%), Positives = 140/542 (25%), Gaps = 139/542 (25%) Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D + L PL + E L + + G + ++ + + ++L Sbjct: 2255 LDKLPKLQSEGLLRPLLEVEMPLVRILAAMEATGVALAPRVLRDQRGPLEARLRQLAHKA 2314 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI------------DLVDMSEGTLKSILSHSNITQ 272 + LF + + + L S Sbjct: 2315 HVAAGMTFD-LNSPKDVSEVLFQHLNLQPPPCAFTSHHQKHPST-KXEVLEELEESTHHP 2372 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + L+ R + TL G+L G+ + A+ TGR S Q +PR Sbjct: 2373 ILRYLLDYRSLHKLL-TGFVETLYSTA--RGQLCGSW-LHTATATGRLSMDEPNLQTIPR 2428 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASD------------------------------ 362 L+Q E G Sbjct: 2429 PVEYCFQLSQEESPRATTEMAVGVAGAEGQVPPLQPLQPAQGDGGEEAGGGGGGGGCRTV 2488 Query: 363 -----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG-EDIYVTTYAKA 416 +R+ +A G ++ AD IE R++A +G+ N +D + A+ Sbjct: 2489 VRMHFNLRNAFVAPPGHVILTADYKQIELRLMAHFSGDSALCDLLRNPAQDPFTLLAAEW 2548 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +++V+ E R K + + Y G Sbjct: 2549 KRLSVEQVTPEVRVQAKRLAYGMLYGMGTSTLAA-------------------------- 2582 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + +R GV + K++ E Sbjct: 2583 ------------------ELGVSVHEAAELSDNFRRAIPGVDRWMKEVVEQCRSCGY--- 2621 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL-NTATSQLMRERTYGG 595 IV RR + + + +Q R+ Sbjct: 2622 -----------------------IVTLMGRRRYFPRINERSCKEARSQRAQSERQAI--- 2655 Query: 596 KLTENIVQAISRDILCEGMK----NATKNGY----DIVLTVHDEIVSETPDTPYFSVGTL 647 ++ Q + D++ M + G+ +VL VHDE+V E ++ L Sbjct: 2656 ---NSVCQGSAADLVKAAMISLTRRIREEGWAGRARLVLMVHDELVLEVETGLLPAMAAL 2712 Query: 648 CS 649 Sbjct: 2713 TR 2714 >gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae] gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae] Length = 595 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 70/534 (13%), Positives = 164/534 (30%), Gaps = 74/534 (13%) Query: 160 GEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKL 209 + T L +L L + E + + G + + Sbjct: 94 QTRAALECVFTFHLMVKLSKLLEEQGLSTAFRNVEMPSLVALARLELNGAGFNPEECETQ 153 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID---LVDMS--------- 257 +++ + L+E KL + T A+ L+ ++ + Sbjct: 154 CQVMKDRLRMLEERAHKLAGHTF-ALNSTKAVDKVLYEEKKLEINEDPSTNSQPQERLST 212 Query: 258 --EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA- 314 +G L+ + + + L ++ + S+ K+ L + + RL + Sbjct: 213 SRKGVLEKLKTSHPLHPLPGVILKWKHISNLLN--KVTPLQKKNVYNPRLNMDRIYSTCN 270 Query: 315 --SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR + Q +P++ E + + + C+R I Sbjct: 271 LHTATGRVAFHDPNLQFIPKEFEIEMPTDTNNE-DGPPAAGEETMSKRKVCMRHAFIPFK 329 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G ++ AD + +E R++A ++ + +A +G+D++ ++ ++ VS + R Sbjct: 330 GGVILAADYSQLEVRIMAHLSKDSKLTQALNSGQDVFKAIASQWKGVAVEHVSDKLRQQA 389 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y G K L + + + + + + + DQ Sbjct: 390 KQLYYGIIYGMGPKTLGEK-----LGVSKEEGKRRIETFKSSYTGIQRYRQTTVDQCKRN 444 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + L ++ L++ SA + +++ Sbjct: 445 GYVQTMAERRRYLPDINGEDYYK--------LSQAERQAFNTTIQGSAADLVKKAMVLID 496 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 + + P +RR G+ + T + ++ Sbjct: 497 QRLQQEF---PDTRRSH---RHGESTAAAADTDKRRSQQPSSPP---------------- 534 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 G ++L +HDE++ E + V + M K + LP+K Sbjct: 535 -------RGAYLILQLHDELIYEVHEEDEQKVAQIVKHKMEKAMELSVELPVKV 581 >gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179] gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179] Length = 861 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 76/607 (12%), Positives = 153/607 (25%), Gaps = 156/607 (25%) Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + ++LA + ++ + +L + K Sbjct: 382 PTHYEDVALLAWLHNSS-----------LEPQMSALGRLFSLESFSSKPHAPL-NAAQME 429 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +N + + Y +L + L E L + + +G+ +DL L Sbjct: 430 SNTRLIARAYTHYKDTLSPDLLQLAREL------EYPLLAILLEMQAQGFSLDLAYFQTL 483 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSI 264 ++ AQ L I L I + T +L+ G+ + T ++ Sbjct: 484 KQEFAQSLNTLQNQIHALAHTDI-NVNSTKQWAHFLYQDLGLQAKGVKKIKTGFSTDEAS 542 Query: 265 LSHSNITQLAK-----------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 L T D +L + L + G++ + Sbjct: 543 LKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVEPLLTQ-NQHGKIHTIFYQHT 601 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372 + + R S QN+P + I S Sbjct: 602 -TASSRLSSAHPNLQNIP------------------------IRTPLGKKIAHGFIPSAP 636 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 L+ AD + IE R+LA + + I+AF +DI++ T FN P + Sbjct: 637 DLLLLGADYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFNDPHKRH-------- 688 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 A A G+ Sbjct: 689 ------------AAKSINFALIYGMGP------------------------------RRL 706 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A K+ + + + L + + +R + Sbjct: 707 ADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLKARILQEGKITTLLGHQRHFDFTNAT-- 764 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 ++ + Y + + Q + D++ Sbjct: 765 ------------------PKLQAE----------------YLREGINTLFQGSASDLVKL 790 Query: 613 GMKNATKNGY-----DIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAE 666 M + +++ VHDEI+ E P T + + ++M +PL+ Sbjct: 791 AMLKIHAHIAKYPRVKMLVQVHDEIILEVPKTQVSQIALEIKTIMEGIYP--LKVPLECH 848 Query: 667 GYEAKRY 673 + Sbjct: 849 TSYGANW 855 >gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 635 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 80/275 (29%), Gaps = 52/275 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYM----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSL 109 + + L + + + N F+ +F + GI++ + T +L+ T ++ Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 110 KNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + GK + + EY D + Sbjct: 462 DDLAKRYLGHETIAFESLAGKGKSQL---------------TFNQIPLEQATEYAAEDAD 506 Query: 169 ATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L E L + + G ID D + IA Sbjct: 507 VTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRL 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 L++ L + T L+ LF G+ Sbjct: 567 TALEKQAYALAGQPF-NLASTKQLQEILFDKLGLP 600 >gi|281339993|gb|EFB15577.1| hypothetical protein PANDA_004677 [Ailuropoda melanoleuca] Length = 769 Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats. Identities = 67/501 (13%), Positives = 133/501 (26%), Gaps = 62/501 (12%) Query: 65 TVMCVAHNSL-FERILFKK--TLGIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119 + N+ F R + + G ++ + A +A Sbjct: 306 KCPVICFNAKDFVRTVLQFFGHDGSWKHVVHFVGLDPRIAAWLIDPG----DAA------ 355 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EY------CKRDVEATRE 172 + K L + + + Y C + Sbjct: 356 -PSFEDLVAKYLESSISVKVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKARRLT 414 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E L + + ++D + + + L+ K+L+++ G Sbjct: 415 VYGLWQLFCTLELPLIPILAVMESHSIQVDREEMERTSALLGSRLKELEQEAH-FVAGEQ 473 Query: 233 RSSRQTYALRMYLFLITGIDL-------VDMS----EGTLKSILSHSNITQLAKDLILNR 281 LR LF + L T +++L +IL Sbjct: 474 FLITSNNQLREVLFGKLKLPLLSPRETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEY 533 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + ++ L A G + T G + TGR S Q + + Sbjct: 534 RRVHKTKSAFVDGLL-ACMRKGSISSTWNQTG-TVTGRLSARHPNIQGISKHPIQITKPQ 591 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 TI+ RS +A G + AD + IE R+LA ++G+ +K Sbjct: 592 NFKGVEGAMLTISP---------RSMFVAPEGHTFLAADFSQIELRILAHLSGDPELLKL 642 Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F E + T ++ P + V+ R K + + Y G + L + Sbjct: 643 FQESERDDVFSTLTSQWKGVPPEHVTHADREQTKKVVYSAVYGAGKERLAAC-----LGV 697 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + +++ + Q + ++G L V Sbjct: 698 TVQEAAWFLESFLQKYKKVKDFVQTTIAQCHQTGYVASIMGRRRPL---------PRVRA 748 Query: 520 LWKDLTEGFACVVQEGGSISA 540 + L Sbjct: 749 QDQQLRAQAERQAVNFVVQGT 769 >gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG] gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG] Length = 608 Score = 187 bits (474), Expect = 7e-45, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 193/699 (27%), Gaps = 175/699 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET G+ Y + I L + + + + Sbjct: 35 LRILGLDTETT--------GLNIYQDAFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++ LG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERMLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E ++ R+ + A RT R S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A +G+ +V D E RVLA +A + Sbjct: 374 --------------------------MVRRCFLADSGQLMVSVDYQAQELRVLAALANDR 407 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I+AF + D++ T S R +GK++ A + G A Sbjct: 408 TMIQAFKDNADLHQITADA---------SGVDRKVGKMVNFAYVFGSGPSTIAAQA---- 454 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + V + + Sbjct: 455 ----------------------------------------GITFPEAKRVIAGFEQSYPE 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K L A + ++ P+ RRL + Sbjct: 475 VTALSKSLQREAANLGY--------------------------VITPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 G +VQ+ SRD+ + + G + L +HDE+++ Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLA 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 P+ + + +M + G+ + + R Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585 >gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50] Length = 263 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 100/364 (27%), Gaps = 112/364 (30%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P +R IA + Sbjct: 1 TGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFIAPEDYVI 36 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 37 VSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAIN 96 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G+ A + Sbjct: 97 F--------------GLIYGMS------------------------------AFGLARQL 112 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + ++ GVL+ + Sbjct: 113 NIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGY----------------------- 149 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + RRL D+K A + +Q + DI+ M Sbjct: 150 ---VETLDGRRLYLPDIKSSNGARRAAAERAA---------INAPMQGTAADIIKRAMIA 197 Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYE 669 +++ VHDE+V E +V + LM +PL E Sbjct: 198 VDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGS 255 Query: 670 AKRY 673 + + Sbjct: 256 GENW 259 >gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus tauri] gi|116057584|emb|CAL53787.1| DNA polymerase I (ISS) [Ostreococcus tauri] Length = 538 Score = 186 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 70/571 (12%), Positives = 146/571 (25%), Gaps = 139/571 (24%) Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------E 184 S S ++ N +W + D+ ++R + E Sbjct: 67 YDGGISEVSGCFEEVTKNGDASWDSPTARLRADLALALRYYQRGSEIPRMQGISFARIVE 126 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + + + RG D + ++L + G+ + + Sbjct: 127 AKIAVALGAMQHRGMCFDRHEANTQRAAANARVEELQNRARDVIGGVEINLSSAQQVGDV 186 Query: 245 LFLITGIDLV-----DMSEG----TLKSILSHSNITQLAKDLILNRLASS-GSAILKLNT 294 L+ + ++ T +L A+ ++ +R A + + Sbjct: 187 LYNQLKLPPPSAHAMKGAKSSHLSTSVDVLQQMKHP-FAQIVLDHRGALKERAMCDGYDK 245 Query: 295 LSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V+++G R+ ++ TGR S Q + R Sbjct: 246 -ATVVNAEGHARIHTRWN-NTSTATGRLSSSAPNVQQVGRGS------------------ 285 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R+C IA G+ LV AD + IE RVLA + ++ I F Sbjct: 286 -----------MRNCFIAPPGRVLVAADYSQIELRVLAHLTEDERLISLFNEHSR----- 329 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 V + + ++ Sbjct: 330 --------------------TVDVFCAIW--------NAGRNLPIETPTEPGTRDI---- 357 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + ++ + A K + A+ V Q + + Sbjct: 358 ---AKRTAYGIVYGQHATGLAEKLNCSKFEAQGYIAAFHRAFPRVQQWISRVIQTAERDG 414 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 I+ S R + + + + Sbjct: 415 AV-------------------------IIPFSGRHRPLPKIHSNVFSERSEAQRQ----- 444 Query: 593 YGGKLTENIVQAISRDILCEGMKN---ATKNG------YDIVLTVHDEIVSETPDTPY-F 642 ++Q + D++ M ATK G ++V +HDE++ E Sbjct: 445 ----AVNTVIQGSASDLIKTAMLRWCEATKAGEARAELVELVAQIHDELLFECEKDYVQE 500 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 +V + S M +P + K + Sbjct: 501 AVRVIRSCMEGA--LCLSVPTPVKISTGKSW 529 >gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 65/407 (15%), Positives = 111/407 (27%), Gaps = 88/407 (21%) Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 DL+ + + L E GR+ ++ + TGR S N P Sbjct: 529 INDLLELKSIEVLLHT-FIIPLIELTDPSGRIHTSININ--TETGRLSSRNPNLLNQPAL 585 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 E+ +R IA G KL+VAD +E RVLA + Sbjct: 586 EKDRY------------------------KIRKSFIAKKGNKLIVADYGQLELRVLAHMT 621 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 I AF G D + T F +++ K EL + + Sbjct: 622 KCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDK--------GELLIEWDKSKGKA----- 668 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + + FA + + AW A+ Sbjct: 669 -------PAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQ 721 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V Q ++ R Sbjct: 722 RKEVEQWQYNVRMIAKNQ--------------------------FFTQTLLGRYRYLEKY 755 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 + + + +R +Q + DI+ M K GY ++L Sbjct: 756 FQQQT--RSYINHGLRAAI------NTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQ 807 Query: 628 VHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ ++ + LM LPL+ + + Sbjct: 808 VHDELILEGPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNW 854 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 49/349 (14%), Positives = 93/349 (26%), Gaps = 102/349 (29%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLWD-RTEQSAMPSDLLQ 59 D ET + + + + + + P D + S + + Sbjct: 78 DTETI-DIDVKSETP---INRGRLICASAFAGPEVNFGNGPRLFIDNFAQNSDLIMLFKE 133 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNACL 114 Y DE ++ + HN F++ +F GI++ + T +AR SL L Sbjct: 134 YFEDEKILKIWHNYGFDKHIFGNN-GINVRGF-FGDTMHMARLLDPSKQPQEYSLAKLSL 191 Query: 115 ALNFSEHLTKMEEGKALIARFCKG------------------------------------ 138 A E K+ + K + K Sbjct: 192 AY---EEEIKLVKTKRMECLLAKPNLTDEERSSLQLFGEHLLDINLKTSMKQIFGQNKEL 248 Query: 139 ----SIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW---- 188 Y H Q + EY D E T L L L + + + Sbjct: 249 KNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEITYFLCLTLKDLLNKTKIFYNLKP 308 Query: 189 -----------------------------LLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + + G ++D+D V ++ ++ K+ Sbjct: 309 TDSDYQTKQNEFGINSLGDIYSKYWNSLGEILTELEREGMQVDMDHVKNIKVKAEEDMKQ 368 Query: 220 LDEDIVKLTDGI------IRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 +++ +K + T L+ F V + T+K Sbjct: 369 YEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKKQQVKKTPQTMK 417 >gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 65/407 (15%), Positives = 111/407 (27%), Gaps = 88/407 (21%) Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 DL+ + + L E GR+ ++ + TGR S N P Sbjct: 529 INDLLELKSIEVLLHT-FIIPLIELTDPSGRIHTSININ--TETGRLSSRNPNLLNQPAL 585 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 E+ +R IA G KL+VAD +E RVLA + Sbjct: 586 EKDRY------------------------KIRKSFIAKKGNKLIVADYGQLELRVLAHMT 621 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 I AF G D + T F +++ K EL + + Sbjct: 622 KCKAMIDAFLKGGDFHSRTVITMFPHIQEEIDK--------GELLIEWDKSKGKA----- 668 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + + FA + + AW A+ Sbjct: 669 -------PAPLVKDKYAAERRKAKVLNFSIAYGKTATGFAKDWQCEVKEAQKTIDAWFAQ 721 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V Q ++ R Sbjct: 722 RKEVEQWQYNVRMIAKNQ--------------------------FFTQTLLGRYRYLEKY 755 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLT 627 + + + +R +Q + DI+ M K GY ++L Sbjct: 756 FQQQT--RSYINHGLRAAI------NTPIQGGAADIVIAAMVKIYKNQSLKDLGYKLLLQ 807 Query: 628 VHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P+ ++ + LM LPL+ + + Sbjct: 808 VHDELILEGPEENAQEALKIVKELMENPFEIQLELPLEVDAKIGNNW 854 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 49/349 (14%), Positives = 92/349 (26%), Gaps = 102/349 (29%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCA------YAWDDEPVKLWD-RTEQSAMPSDLLQ 59 D ET + + + + + + P D + S + Sbjct: 78 DTETI-DIDVKSETP---INRGRLICASAFAGPEVNFGNGPRLFIDNFAQNSDLIMLFKD 133 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSLKNACL 114 Y DE ++ + HN F++ +F GI++ + T +AR SL L Sbjct: 134 YFEDEKILKIWHNYGFDKHIFGNN-GINVRGF-FGDTMHMARLLDPSKQPQEYSLAKLSL 191 Query: 115 ALNFSEHLTKMEEGKALIARFCKG------------------------------------ 138 A E K+ + K + K Sbjct: 192 AY---EEEIKLVKTKRMECLLAKPNLTDEERSSLQLFGDHLLDINLKTSMKQIFGQNKEL 248 Query: 139 ----SIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW---- 188 Y H Q + EY D E T L L L + + + Sbjct: 249 KNGQVSKLKVYPKILQMHCLPQYINQWVEYSTLDSEITYFLCLTLKDLLNKTKIFYNLKP 308 Query: 189 -----------------------------LLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + + G ++D+D V ++ ++ K+ Sbjct: 309 TDSDYKTKQNEFGINSLGDIYSKYWNSLGEILTELEREGMQVDMDHVKNIKVKAEEDMKQ 368 Query: 220 LDEDIVKLTDGI------IRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 +++ +K + T L+ F V + T+K Sbjct: 369 YEQNFIKWVQTTQEGDVSQFNCSSTQQLQQLFFAPCKKQQVKKTPQTMK 417 >gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae] gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae] Length = 2135 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 83/646 (12%), Positives = 178/646 (27%), Gaps = 138/646 (21%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---------PSDLLQYLRDETVMCVAH 71 ++ + I ++ D + Q ++ + + V H Sbjct: 1560 LFQVDDSTYIDCLSFCVDSH--YVVHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMH 1617 Query: 72 NSLFERILFKKTLGIDIPSK--RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEE 127 + + + + + ++ + ++ +V + S +N C Sbjct: 1618 KTKDQLKVILQAIP-ELKTIAVKFEDPNVASWLMQPDRNCSFQNMCQQYAPECLNLLNLC 1676 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 G L G S V+A + F ++ D E L Sbjct: 1677 GSGL-GYTSYGLDASSEVSAQVRAQVEACVSVHILNGQMKSLEEHQFIKVFR--DNEMPL 1733 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 L+ + G+ + + L IA KKL+ I +L G + + A+ L + Sbjct: 1734 CLILAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELN-GSRFNINSSQAVAKVLGI 1792 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 T + +L +LI + + + L + + R+ G Sbjct: 1793 HRK---PTGRVSTSREVLERLEAP--IANLICQYRKLNALLVKNVQPLMK-CCLNNRIHG 1846 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 A TGR S QN+ + + I RS Sbjct: 1847 HSITNTA--TGRISMAEPNLQNVAKNFVVDVQDRGAIV-----------------SCRSA 1887 Query: 368 IIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + + + L+ AD +E R+LA ++ + + A + DI+ + A +VS Sbjct: 1888 FMPMDSTRCLLSADFCQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSD 1947 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + R K + + Y Sbjct: 1948 QLREGTKKICYGIIYGMSM----------------------------------------- 1966 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + A + + E++ + + + + G+ L + Sbjct: 1967 ---RKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYARHKGYVETIT-------- 2015 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 RR +++ + + + R+ + +Q + Sbjct: 2016 ------------------GRRRYLENIRSEDA---GTRKKAERQA------VNSTIQGSA 2048 Query: 607 RDILCEGMKN-------------ATKNGYDIVLTVHDEIVSETPDT 639 DI + +N ++VL +HDE++ E P Sbjct: 2049 ADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLHIHDELMFEVPAD 2094 >gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper] gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper] Length = 609 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 94/682 (13%), Positives = 180/682 (26%), Gaps = 172/682 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET G+ Y + I L + + + Sbjct: 35 LRILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGVFVGAAATA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL E + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSEDMLRKAEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATNKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E ++ R+ + A RTGR S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ + D E RVLA ++G+ Sbjct: 374 --------------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGD- 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +TM Sbjct: 407 ----------------------------------------------------QTMLRAFE 414 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + + A + + V + + + G Sbjct: 415 EESDLHQVTADAAGVDRKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPG 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K + + I P+ RRL + Sbjct: 475 VDTLNKRMQQEAGSAG--------------------------FITTPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVS 634 ++Q+ SRD+ + + G+ ++ L VHDE++ Sbjct: 507 -----------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLL 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNP 655 P+ +V + +M + Sbjct: 550 SLPEADAEAAVKEVGQIMEQRI 571 >gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus] Length = 467 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 72/538 (13%), Positives = 148/538 (27%), Gaps = 127/538 (23%) Query: 168 EATRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + T +L +L E L + + + +D + + + L+ K+L+ Sbjct: 12 DLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELE 71 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNI 270 ++ G LR LF + L+ + T +++ Sbjct: 72 QEAH-FVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMTQWRTS 130 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 A + +A L + + G + T G + TGR S Q + Sbjct: 131 GVPAGPHC-----CATTADSCLLSWLYPIGLLGSISSTWNQTG-TVTGRLSAKHPNIQGI 184 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + TI+ R+ ++S G + AD + IE R+LA Sbjct: 185 SKHPIKISKPWNFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILA 235 Query: 391 WIAGEDWKIKAFANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 ++G+ +K F E + T ++ + PI++V+ R K + ++ Y G + Sbjct: 236 HLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKERL 295 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + Sbjct: 296 AAC--------------------------------------------LGVTVLEATHFLE 311 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + K++ + + + + RR Sbjct: 312 RFLQKYKKIKDFAQTVIGQCHSAGYVTSIL--------------------------GRRR 345 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-------G 621 + +Q R+ +VQ + D+ M + Sbjct: 346 PLPRICAQDQ---QLRAQAERQA------VNFVVQGSAADLCKLAMIRISTAVATSPTLT 396 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT-----KNPSWAKGLPLKAEGYEAKRY 673 +V +HDE++ E DT L +M + +PLK + + Sbjct: 397 ARLVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 454 >gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus] Length = 2620 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 97/746 (13%), Positives = 182/746 (24%), Gaps = 146/746 (19%) Query: 23 AYAEQAVITLCAYAWDDEPVKLW------------------DRTEQSAMPSDLLQY---L 61 + E ++ A W + + ++ L L Sbjct: 1918 QHCEDTLVVGLAVCWGGKDAYYISLQQMQDQTEICPSLAPPPLDKNLSVTERLRHLQLYL 1977 Query: 62 -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALN 117 + V +N + GI + + V S L N Sbjct: 1978 QEKQERSLVMYNFIQHYKTLVMACGISLEG-SFEDPKVACWLLDSGSKECTLHNMVTNFL 2036 Query: 118 FSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +E G + S D V + + + Sbjct: 2037 PNELPLLEGVGTGQGVQSLGLSSSEDHSGRYRAAIESVLIFNIMNQLHS-----ELRKEN 2091 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 S E + G ++++ + +++ +L G S Sbjct: 2092 LTDVFSKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETKAYQLA-GHSFSL 2150 Query: 236 RQTYALRMYLFLITGIDLV---------------------------DMSEGTLKSILSHS 268 + LFL + T K +L Sbjct: 2151 TSPDDVAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQFSTTKDVLEKL 2210 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-----RLRGTLQFYGASRTGRWSGC 323 LIL + + + L + R+ Q + A TGR S Sbjct: 2211 KPLHPLPGLILEWRRINSAISKVVFPLQREKRFNSALGMERIYPVSQTHTA--TGRVSFA 2268 Query: 324 VFQPQNLPRQ------------------------ERSEEILTQTIQALNRGETIADPLGL 359 QN+PR RS + + + + Sbjct: 2269 EPNIQNVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGRKHSSVLPSGVNTW 2328 Query: 360 ASDC-----------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +D +R + G ++ AD +E R+LA + + I+AF G D+ Sbjct: 2329 TADRTERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRDCRLIEAFNKGADV 2388 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + + A+ + V R K + + Y GAK + + Sbjct: 2389 FKSIAAEWKMIDSEAVGDSTRQQAKQICYGIIYGIGAKSLGE-----QMGIDDNKAANYI 2443 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 S + + ++G L A R + + Sbjct: 2444 ESFKSRYTGIQKFLKETVSNCRRDGFVQTILGRRRYLP--AIRDSNPYIKA------HAE 2495 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 V SA + + ++R + V S + S+ T +L Sbjct: 2496 RQAVNTTVQGSAADIVKTATVNIQRRLEALSSVNKS-------HGHLENSFQRDKTGRLS 2548 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R+R M + G+ I L +HDE++ E + V + Sbjct: 2549 RKRNRE-------------------MLHPISGGFFI-LQLHDELLYEVAEDDVIQVAQIV 2588 Query: 649 S-LMTKNPSWAKGLPLKAEGYEAKRY 673 M + L +K + Sbjct: 2589 KHEMENAVKLSVKLNVKV--KIGPSW 2612 >gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni] gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni] Length = 2080 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 86/659 (13%), Positives = 179/659 (27%), Gaps = 111/659 (16%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAM--------PSDLLQYLRDETVMCVAHNSLFERILFK 81 I ++ D + ++ +L++ L + + H+ + + + Sbjct: 1510 IACLSFCLADNVAYYMNMQQEGKKEAVGTQLKVEELVKLLTRPELTLIMHDGKEQLKILR 1569 Query: 82 KTLGIDIPSK-RWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + + + V S N C G G Sbjct: 1570 HAMPQLVRIAIKLEDPKVANWLLQPDKVLSFHNMCQQFAPECKGLTDLCGSGR-GYSSYG 1628 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197 S V+A + R +L+ D E + L + Sbjct: 1629 LDASNAILPKIRASVEACVSMHILHGQIENLERIGTGQLLKFFRDLEMPIQLSLCNMEFT 1688 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G+ + + L + + KKL+ I +L G + + A+ L G+ Sbjct: 1689 GFPAKQESLQGLSQQMLSTMKKLEAKIYELH-GSRFNLGSSQAVAKVL----GLHRKASG 1743 Query: 258 E-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 + T + IL + LI+ S + L + D R+ G Y A Sbjct: 1744 KVSTSRQILEKLDSP--ISQLIVGYRKLSTVLAKNVQPLLK-CCQDNRVYGQSLSYTA-- 1798 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKK 375 TGR S QN+ + + + RS + + + Sbjct: 1799 TGRISMSEPNLQNVAKDFEINLDSDK-----------------VNISCRSAFLPMDFKRC 1841 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD +E R+LA ++ + ++ + D++ A+ + +VS+ R K + Sbjct: 1842 LISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSENLRNGTKQI 1901 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y G + L + S + + ++ + Sbjct: 1902 CYGIVYGMGMRSLAE-----SLKCTENEAQTVSEQFHQTYAGISAYIQKVVKFARNNGYV 1956 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + G R + + + + + +R K Sbjct: 1957 ETITGR---------RRYLEHINSGELQIKNQAERQAINSTIQGSAADIAKSAI-LRMEK 2006 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + Sbjct: 2007 HLLRYRERLG-------------------------------------------------- 2016 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 T+N ++VL +HDE++ E P + + SL M +PLK + + + Sbjct: 2017 -ITENSVNLVLHLHDELIFEVPIDKAKKIAKVLSLTMESCVK--LSVPLKVKLKIGRSW 2072 >gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem] gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem] Length = 608 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 100/699 (14%), Positives = 183/699 (26%), Gaps = 175/699 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET + Y I L + + + A + Sbjct: 35 LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E +D R+ + A RTGR S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ +V D E RVLA +A + Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +TM Sbjct: 407 ----------------------------------------------------RTMIRAFE 414 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + A + + V + A + G Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K L A + +V P+ RRL + Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VVTPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 G +VQ+ SRD+ + G + L +HDE+++ Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLA 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 P+ + + +M + G+ + + R Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585 >gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik] gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik] Length = 600 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 97/679 (14%), Positives = 177/679 (26%), Gaps = 171/679 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET G+ Y+ L + DE L + + + + L D Sbjct: 38 LAVDTETT--------GLDIYSSTFRCRLVQFGTQDEAWVLPVDESPTQLQQETREAL-D 88 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNAC 113 + V N+ ++ + GI + + + T +LA+ SL+ Sbjct: 89 KLGKIVMQNASYDLQVLDHCFGIKMEDLWPKVLDTQILAKLVDPRPYGAGGFGHSLEELI 148 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 S+ K K L+A+ K + + + + Y D T + Sbjct: 149 AEF-ISKDQAKDV--KGLMAKLAKEHKTTKAKIWSTIDLFHP--EYLTYAGMDTIFTARI 203 Query: 174 FKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++L L E + + I+ +G+++D++ +L + E+ + + Sbjct: 204 CRKLTRLVPDVSRGLVPYEHKISEICSYIDRKGFQLDVEYAQELSDRWLYEKSVWEAILF 263 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDL 277 + + + G + I + + Sbjct: 264 TEYG--LDNPNSNEQCADVIEEAGWKIKGRTDTGKRQVNADLYDEMIKKGTPEQAALAAM 321 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 I + E SD R + A RT R S Q LP + Sbjct: 322 IQEAQKLGKWRNTWVQKFLEVKDSDDRCHTFVNPLQA-RTSRMSITGIPAQTLPAGDW-- 378 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 VR C +A G + D E RVLA ++G+ Sbjct: 379 -------------------------TVRRCFLAEPGHVMSSIDYQTQELRVLAALSGD-- 411 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 KTM Sbjct: 412 ---------------------------------------------------KTMIEAFKT 420 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + A + + + V +A+ + GV Sbjct: 421 GADLHQMTADAAQVPRKIGKMANFLTVYGGGAKTLAEQANIDFPTAKRVLEAFAKTYPGV 480 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + K L IV RRL V Sbjct: 481 ARYSKKLAAEAGRQGY--------------------------IVNGMGRRLP---VDSSR 511 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635 +Y ++Q+ SRD+ C + + G+ + L +HDEIV+ Sbjct: 512 TY----------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEIVAS 555 Query: 636 TPDTPYFS-VGTLCSLMTK 653 P + LM + Sbjct: 556 LPAEKAEWGAKKIGQLMAE 574 >gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5] gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5] Length = 608 Score = 183 bits (465), Expect = 6e-44, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 184/699 (26%), Gaps = 175/699 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET G+ Y + I L + + + A + Sbjct: 35 LRILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E ++ R+ + A RT R S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPANDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ +V D E RVLA +A + Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +TM Sbjct: 407 ----------------------------------------------------RTMIRAFE 414 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + A + + V + A + G Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K L A + +V P+ RRL + Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VVTPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 G +VQ+ SRD+ + G + L +HDE+++ Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHDAGLTPMIRLVIHDEVLA 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 P+ + + +M + G+ + + R Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585 >gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley] gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley] Length = 608 Score = 183 bits (465), Expect = 6e-44, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 185/699 (26%), Gaps = 175/699 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET G+ Y + I L + + + A + Sbjct: 35 LRILGLDTETT--------GLNIYQDDFGIRLIQFG-NPWESWVLPVERGGAFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E ++ R+ + A RT R S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTTSPSAQNLPANDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ +V D E RVLA +A + Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +TM Sbjct: 407 ----------------------------------------------------RTMIRAFE 414 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + A + + V + A + G Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K L A + +V P+ RRL + Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VVTPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG-YDIV-LTVHDEIVS 634 G +VQ+ SRD+ + G ++ L +HDE+++ Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHDAGLAPMIRLVIHDEVLA 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 P+ + + +M + G+ + + R Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585 >gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon] gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon] Length = 609 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 94/683 (13%), Positives = 179/683 (26%), Gaps = 174/683 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET + Y I L + + + + Sbjct: 35 LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85 Query: 61 LRDETVMC-VAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSL 109 L+ V V HN+ F+ + ++TLG+ + + T + + L Sbjct: 86 LQ--KVEKFVIHNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKL 143 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + + KA +AR K + + + Y D Sbjct: 144 EELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTIL 198 Query: 170 TRELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 199 VSRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYT 258 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAK 275 + T L L TG+ + + + + LAK Sbjct: 259 AVARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAK 315 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 I + E ++ R+ + A RTGR S QNLP + Sbjct: 316 AAIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW 373 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR C +A G+ + D E RVLA ++G+ Sbjct: 374 ---------------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGD 406 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +TM Sbjct: 407 -----------------------------------------------------QTMLRAF 413 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + + + + + A + + V + + + Sbjct: 414 KEESDLHQVTADAAGVDRKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYP 473 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV L K + + I P+ RRL + Sbjct: 474 GVDTLNKRMQQEAGSAG--------------------------FITTPTGRRLPVDPDR- 506 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIV 633 ++Q+ SRD+ + + G+ ++ L VHDE++ Sbjct: 507 ------------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVL 548 Query: 634 SETPDTPYF-SVGTLCSLMTKNP 655 P+ +V + +M + Sbjct: 549 LSLPEADAEAAVKEVGQIMEQRI 571 >gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock] Length = 595 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 98/676 (14%), Positives = 179/676 (26%), Gaps = 170/676 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET G+ Y++ L + D + D+ + Sbjct: 38 LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAIG- 87 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLKNAC 113 V N+ ++ + + GI++ R + T +LA+ SL+ Sbjct: 88 ALRKVVLQNASYDLQVLDQCFGIEMEDLWPRVLDTQILAKLVDPRPFEAGGFGHSLEELI 147 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 E E K L+A+ + + A + +Y D T + Sbjct: 148 AEFISKEQA---ETVKKLMAKLAQEHKTT--KAKIWATIDLFHPEYLKYAGMDTIFTARV 202 Query: 174 FKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 K L PL E ++ + I+ +G+ +D++ +L + +++ + Sbjct: 203 CKALTPLVPDVSRGLVAYEHEISEICSYIDRQGFLLDVEYAQELSDKWLADQQVWEAIAF 262 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-NITQLAKDLILN 280 + T L L G+ + +E K++L + Sbjct: 263 TEYGVEKVN--STEDLAEGL-EEMGVKITGRTETGKRQVDKTLLEKLVAEGNELATIAQE 319 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + ++ R + A RT R S Q LP + Sbjct: 320 AKKLGKWRKTWVQKFLDTRDAEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASD------ 372 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR C +A G + D E RVLA ++ + Sbjct: 373 ---------------------STVRRCFLAEEGDVMASIDYQTQELRVLAALSND----- 406 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +TM Sbjct: 407 ------------------------------------------------QTMIEAFKTGAD 418 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + A + K+ + A+ + GV +L Sbjct: 419 LHQMTADAAQVTRKVGKMANFLTVYGGGAKTLAEQAKVDFPTAKRTLDAFARTYPGVARL 478 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 K L IV P RRL + Sbjct: 479 SKKLGTEAGRKGY--------------------------IVTPVGRRLPVDSSRS----- 507 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638 +VQ+ SRD+ C + K GY + L +HDEIV+ P Sbjct: 508 --------------YSALNYMVQSSSRDVTCRALIRLHKAGYTPYLRLPIHDEIVASLPA 553 Query: 639 TPYF-SVGTLCSLMTK 653 + + + LM + Sbjct: 554 SEAERAAAHIGQLMAE 569 >gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279] gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279] Length = 1273 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 78/414 (18%), Positives = 133/414 (32%), Gaps = 72/414 (17%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A A+ V +L ++ +++ + + + G+ +P Sbjct: 332 LGLA-AYAGGKVY-----RGQPSLQELKKFPEIRSMV-----AK-DLSVLALKEGVWVPP 379 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 +LA +S A P A Sbjct: 380 G--DDPMLLAYLYDPSNS-DPASTVR----------------RYGAGDWGSDPGERAQAA 420 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 + W+ + + L++++ E+ L + I RG ++ + +L+L Sbjct: 421 HT--LWETLQSRIGENPKIEW-LYQQI------EKPLSAVLARIEARGISLNAEYLLQLS 471 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTLKSIL 265 E +A+E L+ +I +L G + L + L+ + T S L Sbjct: 472 EELAKEISYLEAEIHRLA-GRSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASAL 530 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 + IL + L+ L + + GRL G + TGR S Sbjct: 531 EELLGQHPIIERILTYRELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTG-TATGRLSSVD 589 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R A+ G +LVVAD + I Sbjct: 590 PNLQNIP------------------------VRTEIGRRIRKAFRAAPGMRLVVADYSQI 625 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 E RVLA ++G++ I F G DI+ T A F DKV EQR K + Sbjct: 626 ELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGAEQRRAAKCLVEG 679 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 60/227 (26%), Gaps = 45/227 (19%) Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A L ++ + + + + + + E + + Sbjct: 1083 ARVYDLSVEGKPAYLAEGFVSH---NTINFGVLYGMSAHRLSNELSISYAEAEGFIERYF 1139 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A + V + + + RR + Sbjct: 1140 ASYPKVREWIERVLADARQTGYVETMF--------------------------GRRRFVA 1173 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYDIVLT 627 D+ + A ++ VQ + D++ M +VL Sbjct: 1174 DLGSRVRSVREAAERM---------AFNMPVQGTAADLMKLAMVKLQPELEPLEAHLVLQ 1224 Query: 628 VHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E P +V + +M + WA +PL+ + + Sbjct: 1225 VHDELLVEAPADKAEAVAGVVREVMQQA--WALAVPLEVGTGIGENW 1269 >gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a] gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a] Length = 302 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 107/402 (26%), Gaps = 115/402 (28%) Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S +N L + + +DG++ + TGR S QN+P Sbjct: 3 YRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTGRLSSVEPNLQNIP--------- 52 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + L D + +E RVLA ++ E + Sbjct: 53 ---------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNML 97 Query: 400 KAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 +AF G DI+ T K F D+V+ R K + G+ Sbjct: 98 EAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNF--------------GIVYGIS 143 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 ++N + + + ++ + Sbjct: 144 DYGLAKN------------------------------LGISRQEAQNFINNYFEQYPQIK 173 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 K + + RR + D+ Sbjct: 174 DYMKAAVKLAREKGYAETIMH--------------------------RRRLLPDIHNKNF 207 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEI 632 + + R + +Q + DI+ M K ++L +HDE+ Sbjct: 208 NIRSFA---ERTAI------NSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 258 Query: 633 VSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 + + P + TL +M + +PL A+ + Sbjct: 259 LFDVPSEELDLIRTLVPKIMQQAAQ--LDVPLIADANWGHNW 298 >gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 354 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 60/416 (14%), Positives = 107/416 (25%), Gaps = 112/416 (26%) Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 + + + ILN S + L + V DGR+ + A+ TGR Sbjct: 26 EVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFS-TTATATGRL 84 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + +R IA G K++ AD Sbjct: 85 SSSNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISAD 120 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA +A +AFANG+DI+ T + F Sbjct: 121 YSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGV--------------------- 159 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + ++ + + A + + Sbjct: 160 -------------------------QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITI 194 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + + + + + Sbjct: 195 AEAAEYINYYFSCYPEIKAYMEKAVSIARLHGY--------------------------V 228 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TK 619 RR D+ Y+ R Q + DI+ + Sbjct: 229 ETLFGRRCFVRDINNTIPYIRQFA---ERAAINAPL------QGTAADIIKRATIQLFDQ 279 Query: 620 NGY-DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 I+L VHDE++ E D + + +M +PL+ E + Sbjct: 280 LKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE--ISIPLEVEIKIGDNW 333 >gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole] Length = 609 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 92/682 (13%), Positives = 175/682 (25%), Gaps = 172/682 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET + Y I L + + + + Sbjct: 35 LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKD 276 + T L L TG+ + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTTTGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E ++ R+ + A RTGR S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTGRMSTSNPSAQNLPSGDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ + D E RVLA ++G+ Sbjct: 374 --------------------------MVRRCFLADPGQIIASVDYRAQELRVLAALSGD- 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +TM Sbjct: 407 ----------------------------------------------------QTMLRAFE 414 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + + A + + V + + + G Sbjct: 415 EESDLHQVTADAAGVDRKIGKMANFLVCYGGGAGKLATNAGITFPEAKKVLEVFATTYPG 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K + + I P+ RRL + Sbjct: 475 VDTLNKRMQQEAGSAG--------------------------FITTPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVS 634 ++Q+ SRD+ + + G+ ++ L VHDE++ Sbjct: 507 -----------------AYSALNYLIQSSSRDVTGAAVLRLHEAGFTPNMRLVVHDEVLL 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNP 655 P+ +V + +M + Sbjct: 550 SLPEADAEAAVKEVGQIMEQRI 571 >gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 384 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 127/379 (33%), Positives = 171/379 (45%), Gaps = 53/379 (13%) Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 ++A D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 12 AMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAF 71 Query: 403 ANGEDI----------------------------------------YVTTYAKAFNTPID 422 + + Y YA +F Sbjct: 72 RDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQ 131 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 V+KEQR IGKV ELALGY GG F A+ +DL+ ++ +A Sbjct: 132 AVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ--EAVEAL 189 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 W + AC++ K+AWR H + WK L ++ + Sbjct: 190 QWTKANQRPTFGLSDRAWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-- 247 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGK 596 + M+ + + + LPS R L Y+ + G SY+ T T + R TYGGK Sbjct: 248 ---CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGK 304 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656 L ENI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM P Sbjct: 305 LVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPP 364 Query: 657 WAKGLPLKAEGYEAKRYRK 675 WA+GLPL AEG++ RYRK Sbjct: 365 WAQGLPLAAEGFQTHRYRK 383 >gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12] gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12] Length = 595 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 93/676 (13%), Positives = 183/676 (27%), Gaps = 170/676 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET G+ Y++ L + + +P ++++ L + Sbjct: 38 LAVDTETT--------GLDIYSDTFRCRLVQFGTQS-EAWVLPVELGGGIPENVIEALYE 88 Query: 64 ETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGL--------PSSLKNAC 113 + V N+ ++ + + ++ + + T +LA+ SL+ Sbjct: 89 VDKL-VMQNASYDLQVLDQIGYAAMEDLWPKVLDTQILAKLVDPRPFEAGGFGHSLEELI 147 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + E K L+ + K + + + + Y D T + Sbjct: 148 AEF---IDKEQAENVKGLMTKLAKEHKTTKAKIWSTIDLFHP--EYLTYAGMDTIFTARI 202 Query: 174 FKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L PL E L + I+ +G+ +D++ L + E+ D + Sbjct: 203 CSKLAPLVPDVSRSLVPYEHKLSEICSYIDRKGFLLDVEYAQALSDKWLYEKS--VWDAI 260 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNIT-QLAKDLILN 280 T+ + + T L G+ + +E +L + +I Sbjct: 261 AFTEYGLENVNSTDQCADAL-EEMGVKIKGRTESGKRQVNDDLLQSLSDDGNELAAIIQE 319 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + S+ R + A RT R S Q LP + Sbjct: 320 AKKLGKWNKTWVAKFLSVRDSEDRCHTFVNPLQA-RTSRMSITGIPAQTLPASDW----- 373 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR C +A G+ + D E RVLA ++G+ Sbjct: 374 ----------------------IVRRCFVADPGQVMASVDYQTQELRVLAALSGD----- 406 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +TM Sbjct: 407 ------------------------------------------------QTMIEAFKTGAD 418 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 ++ + + A + + + V + + GV + Sbjct: 419 LHQMTADASQVVRKVGKMANFLTVYGGGAKTLAEQAHIDFPTAKRVLDGFAKTYPGVARY 478 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 K L + G +IV RRL V +Y Sbjct: 479 SKKL---AMEAGRNG-----------------------YIVNAMGRRLP---VDSSRTY- 508 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPD 638 ++Q+ SRD+ C + + G+ + L +HDE+V+ P Sbjct: 509 ---------------SALNYMIQSSSRDVTCRALIRLHEAGFTPYLRLPIHDEVVASLPA 553 Query: 639 TPYFS-VGTLCSLMTK 653 + LM + Sbjct: 554 GQAEWGAKEIARLMQE 569 >gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta] Length = 2672 Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats. Identities = 83/736 (11%), Positives = 181/736 (24%), Gaps = 145/736 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----RDETVMC---VAHNSL-------- 74 + A W + ++ S++ L D ++ + H Sbjct: 1982 VVGLAVCWGGRDAYYFSL-QKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLRKESD 2039 Query: 75 -------FE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS 119 ++ + + GI + + + V S +L + L Sbjct: 2040 KECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHE 2098 Query: 120 -EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L ME + + + + + + + + + R Sbjct: 2099 LPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR-- 2156 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E + G + ++ + ++ + G S + Sbjct: 2157 ---KVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQ-LAGHSFSFTSS 2212 Query: 239 YALRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNIT 271 + LFL + T K +L+ Sbjct: 2213 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2272 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQ 326 LIL + + + L + R+ Q + A TGR + Sbjct: 2273 HPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPN 2330 Query: 327 PQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------------ 358 QN+PR + +L +G ++ Sbjct: 2331 IQNVPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERAADRGM 2390 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2391 PFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKM 2450 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + V + R K + + Y GAK + +++ S + Sbjct: 2451 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2505 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 ++G R G+ Sbjct: 2506 NQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQ 2556 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + V + + + G + + G L Sbjct: 2557 GSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDR--------TGLLR 2600 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657 + +Q M + G+ I L +HDE++ E + V + M Sbjct: 2601 KRKLQG---------MFCPVRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAVK- 2649 Query: 658 AKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2650 -LSVKLKVKVKIGASW 2664 >gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980] gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980] Length = 280 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 110/379 (29%), Gaps = 103/379 (27%) Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + SDG++ ++TGR S QN+P Sbjct: 1 MIQSDGKVHTRYVQT-LTQTGRLSSVDPNLQNIP------------------------IR 35 Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + + +D + IE RVLA I+ ++ AF G+DI+ +T + Sbjct: 36 LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRV 95 Query: 417 FNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 F + V+ R K + + Y L + + + + FE + Sbjct: 96 FGIEKAEDVTPNMRRQAKAVNFGIVYG-----ISDYGLSQNLGISRKAAQQYIDTYFEKY 150 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + + + + L L R + + + Sbjct: 151 PGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYN--IRSF------AERTAINTP 202 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 SA + + + + + Sbjct: 203 IQGSAADILKIAMIELDK------------------------------------------ 220 Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +L E +QA ++L VHDE+V E P+ S+ L +M + Sbjct: 221 RLKETGLQAT------------------MLLQVHDELVFEVPEKELESLDKLVKEVMEQA 262 Query: 655 PSWAKGLPLKAEGYEAKRY 673 S +PL + K + Sbjct: 263 VS--LHVPLITDSSWGKTW 279 >gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum] Length = 1583 Score = 180 bits (456), Expect = 7e-43, Method: Composition-based stats. Identities = 87/670 (12%), Positives = 187/670 (27%), Gaps = 167/670 (24%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDR-TEQSAMPSDLLQYLRDETVMC 68 RS + ++ + Q + A W + V D + S L + L ++ ++ Sbjct: 1054 RSLENNKNTKLFKFNNQV-LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV 1112 Query: 69 VAHN---SLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLT 123 N + + + I P ++ V +SL N Sbjct: 1113 ---NITDAKLNYKIISQCCNIK-PVCKFRDPFVADWLINGQPKNSLNNL----------- 1157 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 + +++ T A+ + ++++ D Sbjct: 1158 ------------VQWNLNFQGKIQTNDAVFNAFITLKLMSTLRHQL-KQIYIY-KTFKDI 1203 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E + ++ + G+ ++ +++L + + + + E + + GI + + T Sbjct: 1204 EMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQS-GIRFNMQSTLE-WA 1261 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + + L +L+ N S +N + Sbjct: 1262 KVKKKLKLTDSSS---------------HLLVELVKNWRKLSCLRNTHIN--MYLTIQND 1304 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ Y S TGR S QN+P+ E + Sbjct: 1305 RVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEI---------------------LS 1341 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS + + + LV D IE RVLA ++ + + A + D+++ +K N P + Sbjct: 1342 LRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIE 1401 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V E R K + + Y G Sbjct: 1402 VCDELRQKTKQVCYGMLYGMGTVTLS---------------------------------- 1427 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + ++ GV + + + + Sbjct: 1428 ----------ETLNITQDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTL------ 1471 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 S R + D+ + + + Q+ R+ I+Q Sbjct: 1472 --------------------SGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQ 1502 Query: 604 AISRDILCEGMKNATK--------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 + D+ M K +V+ +HDE++ + +T T+ M Sbjct: 1503 GSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA 1562 Query: 655 PSWAKGLPLK 664 + LP+K Sbjct: 1563 VNLCVPLPVK 1572 >gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum] Length = 1691 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 87/670 (12%), Positives = 187/670 (27%), Gaps = 167/670 (24%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDR-TEQSAMPSDLLQYLRDETVMC 68 RS + ++ + Q + A W + V D + S L + L ++ ++ Sbjct: 1162 RSLENNKNTKLFKFNNQV-LKGFAITWYKQSVVHYVDFNKTGPSGVSLLKKLLSNKNLIV 1220 Query: 69 VAHN---SLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLT 123 N + + + I P ++ V +SL N Sbjct: 1221 ---NITDAKLNYKIISQCCNIK-PVCKFRDPFVADWLINGQPKNSLNNL----------- 1265 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 + +++ T A+ + ++++ D Sbjct: 1266 ------------VQWNLNFQGKIQTNDAVFNAFITLKLMSTLRHQL-KQIYIY-KTFKDI 1311 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E + ++ + G+ ++ +++L + + + + E + + GI + + T Sbjct: 1312 EMPIQIILAKMELYGFGLNKKHLVELNDTVNKLMANISEQGFEQS-GIRFNMQSTLE-WA 1369 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + + L +L+ N S +N + Sbjct: 1370 KVKKKLKLTDSSS---------------HLLVELVKNWRKLSCLRNTHIN--MYLTIQND 1412 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ Y S TGR S QN+P+ E + Sbjct: 1413 RVHCDSNTY--SNTGRISMHEPNLQNIPKDYVIENEI---------------------LS 1449 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS + + + LV D IE RVLA ++ + + A + D+++ +K N P + Sbjct: 1450 LRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVFINLSSKWHNIPEIE 1509 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V E R K + + Y G Sbjct: 1510 VCDELRQKTKQVCYGMLYGMGTVTLS---------------------------------- 1535 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + ++ GV + + + + Sbjct: 1536 ----------ETLNITQDEAHKLISEFKRTFPGVNKYFNECVLQCRSMGLVKTL------ 1579 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 S R + D+ + + + Q+ R+ I+Q Sbjct: 1580 --------------------SGRIRHFPDINSEVPKIKS---QVERQAI------NTIIQ 1610 Query: 604 AISRDILCEGMKNATK--------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 + D+ M K +V+ +HDE++ + +T T+ M Sbjct: 1611 GSAADVTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA 1670 Query: 655 PSWAKGLPLK 664 + LP+K Sbjct: 1671 VNLCVPLPVK 1680 >gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda melanoleuca] Length = 2634 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 92/759 (12%), Positives = 193/759 (25%), Gaps = 153/759 (20%) Query: 9 ETRSPQPLPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------------ 55 ET P+ GV + ++ A W + ++ P Sbjct: 1927 ET----PIRDYGVPVKGCDDILLVGLAVCWGGRDAYYFSLQKEQTHPEISSSLVAPSLDP 1982 Query: 56 ------DLLQYLR------DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVL 99 + L D+ + ++ + + GI + + + V Sbjct: 1983 GLTVKERIWYLLSCFQEESDKERSVII----YDFIQSYKILLLSCGISLE-QSYEDPKVA 2037 Query: 100 ARTNGLPSS---LKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 S L + L L +E G+ + + + + + Sbjct: 2038 CWLLDPDSKEPTLHSIVSSFLPHELPLLDGIETGQGIQSLGLNVNSEHSGRYRASVESIL 2097 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + + + + E + G + ++ Sbjct: 2098 TFNAMNQLNSLLKKENLKDVFC-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQ 2152 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM--------- 256 + ++ +L G S + + LFL + Sbjct: 2153 AKLDAIETQAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNGEIKNQNSKKTLGSTRRGND 2211 Query: 257 ---------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD----- 302 T K +L+ LIL + + + L + Sbjct: 2212 NGRKLKLGKQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGM 2271 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----------ERSEEILTQTIQALNRG- 350 R+ Q + A TGR + QN+PR + L + + +NRG Sbjct: 2272 ERIYPVSQSHTA--TGRVTFTEPNIQNVPRDFEIKMPTVVGESPPSQALGKGLLPMNRGK 2329 Query: 351 ---------------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 E +D S +R + G ++ AD + +E R+LA ++ + Sbjct: 2330 EKSCGINSGHQAQMEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHD 2389 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I+ G D++ + A+ + V + R K + + Y GAK Sbjct: 2390 RRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE----- 2444 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + +++ S + ++G L + Sbjct: 2445 QMGIKENDAACYIDSFKSRYTGINHFMRETVKNCKRDGFVQTILGRRRYLPGINDNNPYH 2504 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + SA + V + +++ H S G Sbjct: 2505 KAH--------AERQAINTTVQGSAADIVKVATVNIQKQLETFHSTFKS---------HG 2547 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + G L + +Q G +L +HDE++ E Sbjct: 2548 HREGMLQSER--------TGLLPKRKLQG----------VFCPIRGGFFILQLHDELLYE 2589 Query: 636 TPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + V + M + LK + + Sbjct: 2590 VAEEDVVQVAQIVKNEMESAME--LSVKLKVKVKIGASW 2626 >gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio] Length = 2593 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 89/785 (11%), Positives = 185/785 (23%), Gaps = 216/785 (27%) Query: 10 TRSPQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLW------------------DRTEQ 50 T + K G + E V+ + +W + + Sbjct: 1896 TTPMRNKRKDGFLLKGYEDLVVIGISVSWGAKDAYFVSLQQELVDTDISASLAPPPLDDT 1955 Query: 51 SAMPSDLLQY---LR-DETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLARTN 103 + L Q L+ D +V ++ I K L + + + Sbjct: 1956 LTVEERLKQIQSCLQKDSSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKIACWLL 2010 Query: 104 GLP---SSLKNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L N + + G+ + + G P V +++ Sbjct: 2011 DSSSKERTLHNMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIESVLVFRV 2070 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + E L E + G + + ++ + Sbjct: 2071 MTQLNCL-----LEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKLS 2125 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------------------------ 254 L+ +L G S + LFL + Sbjct: 2126 ALESQAYQLA-GHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKL 2184 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----AVSSDGRLRGTL 309 T K +L +IL + + + L + R+ Sbjct: 2185 SKQFSTTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPIS 2244 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQ----------------------------ERSEEILT 341 Q + A TGR S QN+P+ + +I Sbjct: 2245 QSHTA--TGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINR 2302 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L + D S +R + +G ++ D + +E R+LA ++ + + Sbjct: 2303 LLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHV 2362 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 +G D++ + A+ V R K + + Y G Sbjct: 2363 LNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMG----------------- 2405 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + + +++++ G+ Sbjct: 2406 ---------------------------AKSLGEQMGIEENDAACYIETFKSRYNGIQNF- 2437 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 L E + G ++ R+ +K Y+ Sbjct: 2438 --LRETVQKCGKNG-----------------------YVKTLLGRKRFLPGIKDSNVYIK 2472 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--------------------- 620 + + VQ + DI+ N + Sbjct: 2473 SHAERQ---------AVNTTVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGG 2523 Query: 621 -----------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGY 668 GY I L +HDE++ E + V + M + L+ + Sbjct: 2524 RHRNQFRPLRGGYFI-LQLHDELIYEVAEEDVIQVAQIVKREMESVVKLY--VKLRVKVK 2580 Query: 669 EAKRY 673 + Sbjct: 2581 VGPSW 2585 >gi|115475031|ref|NP_001061112.1| Os08g0175300 [Oryza sativa Japonica Group] gi|40253292|dbj|BAD05227.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|40253609|dbj|BAD05554.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|113623081|dbj|BAF23026.1| Os08g0175300 [Oryza sativa Japonica Group] gi|215737038|dbj|BAG95967.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640001|gb|EEE68133.1| hypothetical protein OsJ_26226 [Oryza sativa Japonica Group] Length = 1033 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 79/790 (10%), Positives = 167/790 (21%), Gaps = 165/790 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 284 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 339 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D + V HN F+ + + I + T LAR Sbjct: 340 LMEFAPFFEDPFIKKVWHNYSFDIHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 396 Query: 107 SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ + K G+ + + + + + Sbjct: 397 YSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSEGK-TISIEPVEKLQRED 455 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195 +L+ Y D +T +L++ L + E + W L + Sbjct: 456 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKME 515 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246 G +D + ++++ ER+ + K D + +R F Sbjct: 516 TEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIE 575 Query: 247 --LITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-------- 294 G + ++ I I Sbjct: 576 NRNKRGETWPQSKTFKVPNDEGIATEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSG 635 Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L G S Q++ E Sbjct: 636 DVLRSLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREA 695 Query: 353 IADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGE 406 + I+ G + + I + G + Sbjct: 696 CHAIAALCEVFSIDKLISGFIVPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPNLQNQ 754 Query: 407 DIYVTTYAKAFN----------TPIDKVSKEQRAIGKVMEL-----ALGYQGGAKVFKTM 451 K + D E R + + A G M Sbjct: 755 PALEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 814 Query: 452 ASHCGLDLQQFSQN-------------------VKSTSTFEDWEQAESHHLWMQDQYPEF 492 + + + + + + + Sbjct: 815 NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGL 874 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + K+ K W + V K + + Sbjct: 875 SWDWKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLL-------------- 920 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R + ++ + R VQ + D+ Sbjct: 921 ------------GRSRQFPNM---THAGPGQKGHVERAAINAP------VQGSAADVAMC 959 Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPL 663 M + G+ ++L VHDE++ E P T+ M+K + + L Sbjct: 960 AMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDL 1019 Query: 664 KAEGYEAKRY 673 + AK + Sbjct: 1020 AVDAKYAKSW 1029 >gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ) [Danio rerio] Length = 2239 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 86/694 (12%), Positives = 178/694 (25%), Gaps = 130/694 (18%) Query: 46 DRTEQSAMPSDLLQY---LR-DETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSV 98 + + L Q L+ D +V ++ I K L + + + Sbjct: 1602 PLDDTLTVEERLKQIQSCLQKDSSVTVT-----YDFIHLYKILLLACELAVRGTFEDPKI 1656 Query: 99 LARTNGLP---SSLKNACLALNFSEHLTKME--EGKALIARFCKGSIDSPPYDCTRANHV 153 +L N + + G+ + + G P V Sbjct: 1657 ACWLLDSSSKERTLHNMVTSFATEDLPLLEGISAGQGVQSLGIFGEASQPGRYRAAIESV 1716 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +++ + E L E + G + + ++ Sbjct: 1717 LVFRVMTQLNCL-----LEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVM 1771 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------------------- 254 + L+ +L G S + LFL + Sbjct: 1772 QAKLSALESQAYQLA-GHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAG 1830 Query: 255 -----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----AVSSDGR 304 T K +L +IL + + + L + R Sbjct: 1831 ARIKLSKQFSTTKDVLEKLKPLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDR 1890 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----------------------ERSEEILT 341 + Q + A TGR S QN+P+ + +I Sbjct: 1891 IHPISQSHTA--TGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWCKRTKINR 1948 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 Q L + D S +R + +G ++ D + +E R+LA ++ + + Sbjct: 1949 QLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHV 2008 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 +G D++ + A+ V R K + + Y GAK + +++ Sbjct: 2009 LNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGE-----QMGIEE 2063 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + ++ + + L+G L G+ Sbjct: 2064 NDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFL---------PGIKDSN 2114 Query: 522 KDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + V SA + + + ++R + +P+ S Sbjct: 2115 VYIKSHAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPT------SHQHPSIRLG 2168 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 +Q R GY I L +HDE++ E + Sbjct: 2169 GRHRNQFRPLRG----------------------------GYFI-LQLHDELIYEVAEED 2199 Query: 641 YFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 V + M + L+ + + Sbjct: 2200 VIQVAQIVKREMESVVKLY--VKLRVKVKVGPSW 2231 >gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus caballus] Length = 2701 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 92/750 (12%), Positives = 192/750 (25%), Gaps = 139/750 (18%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ + G + ++ A W + ++ +P L L Sbjct: 1994 DPPIREDGFPVKGCDDILVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPRLTM 2053 Query: 64 ETVMCV----AHN--------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M +++ + + GI + + + V S Sbjct: 2054 KDRMWHLRSCFQKESDKERSVIVYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2112 Query: 108 S---LKN-ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 L + L L + E I + V++ +F Sbjct: 2113 KEPTLHSIVTSFLPHELPLLEGIETGQGIQSLGLNVDTEHSGRYRAS--VESILIFNSMN 2170 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + + +E + + E + G + ++ + ++ Sbjct: 2171 QLNSLLKKENLQDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQ 2228 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM------------------ 256 + G S + + LFL + Sbjct: 2229 AYQ-LAGHSFSFTSSDDIAEVLFLELKLPPNGEMKNQGGKKTLGSTRRGNDNGRKLRLGK 2287 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQF 311 T K IL+ LIL + + + L A + R+ Q Sbjct: 2288 QFSTSKDILNKLKALHPLPGLILEWRRITNAITKVVFPLQRAKRLNPFLGMERIYPVSQS 2347 Query: 312 YGASRTGRWSGCVFQPQNLPRQ-----------ERSEEILTQTIQALNRG---------- 350 + A TGR + QN+PR + L + + + RG Sbjct: 2348 HTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQALGKGLLPMGRGNEKSHGLNLG 2405 Query: 351 ------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E +D S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 2406 HQAQTEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNT 2465 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 2466 GADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGILYGMGAKSLGE-----QMGIKENDA 2520 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 S + ++G R G+ Sbjct: 2521 ACYIDSFKSKYTGINHFMRETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYH 2571 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + V + + + G + + Sbjct: 2572 KAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHSSF--------KSHGHREGMLQSD 2623 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 G L + +Q M + + G+ I L +HDE++ E + V Sbjct: 2624 R--------TGLLPKRKLQG---------MFSPIRGGFFI-LQLHDELLYEVAEEDVVQV 2665 Query: 645 GTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 + M + LK + + Sbjct: 2666 AQIVKNEMESAIK--LSVKLKVKVKIGASW 2693 >gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis] gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis] Length = 267 Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats. Identities = 61/364 (16%), Positives = 99/364 (27%), Gaps = 112/364 (30%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR + QN+P +R +A G + Sbjct: 5 TGRLASSDPNLQNIP------------------------VRTAEGRRIREAFVAPPGSHI 40 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE R++A ++ + + AFAN EDI+ T A+ F V EQ Sbjct: 41 VSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAAVDSEQ-------- 92 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + + + L A Sbjct: 93 ------------------------------------RRYAKVINFGLIYGMSAFGLAQNL 116 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + +A + + A++ GV Q D E Sbjct: 117 NIERSAAANYIERYFARYPGVRQYMNDTRELAKQQGYVETIF------------------ 158 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RRL ++ + R +Q + D++ M Sbjct: 159 --------GRRLWVPEINSANV---QRRNGAERAAINAP------MQGTAADLIKLAMIA 201 Query: 617 AT------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYE 669 K +++ VHDE+V E PD + L LM + +PL AE Sbjct: 202 VDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLPRLMQSVAT--LDVPLLAEVGS 259 Query: 670 AKRY 673 + Sbjct: 260 GNNW 263 >gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335] gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335] Length = 500 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 72/495 (14%), Positives = 139/495 (28%), Gaps = 139/495 (28%) Query: 173 LFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + + L+P + E + + + RG + + + + + + L+ +T+ Sbjct: 64 IDRDLLPSLENIEAPVQSILAAMECRGVAFYPNHLKRNEAQANERIEALEAQARTITNDS 123 Query: 232 IRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNI-----TQLAKDLIL 279 + YL+ I + + T + L D+IL Sbjct: 124 SFLLSSPQQISNYLYDILKMKVPSGLVQKTKSQRSTSEETLQALKAASNGSPHPIIDVIL 183 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L R+ A RTGR S Q +P+ + Sbjct: 184 EFRTLNKLLTTYIKPLPTFCLPQ-RIHPQWSEC-AVRTGRLSCRQPNLQQVPKDD----- 236 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDW 397 VR + L D + E R+LA ++G+ Sbjct: 237 ---------------------GASVRRSFVPSKKETMCLFACDYSQKEVRILAHMSGDKA 275 Query: 398 KIKAFANGEDIYVTTYA--KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I F ++ + N P++ ++ ++RA K + LAL Y Sbjct: 276 LISLFQMDANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPN--------- 326 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + A K + + + + + Q Sbjct: 327 -----------------------------------QVAKKLNITKSQAIQMMNDFFRRFQ 351 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV +D E + ++V + RR + Sbjct: 352 GVKNWMEDTKEFARR--------------------------NHYVVTIAGRRRYLDGIDS 385 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--------------- 620 D N A +Q R+ ++Q + D++ M N +N Sbjct: 386 DD---NGAKAQAERQAI------NTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSS 436 Query: 621 GYDIVLTVHDEIVSE 635 I+L +HDE+V E Sbjct: 437 RPRILLQIHDELVLE 451 >gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 297 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 65/392 (16%), Positives = 108/392 (27%), Gaps = 115/392 (29%) Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + TL +A++ DGR+ T A TGR S QN+P Sbjct: 8 VQTLMDAINPRDGRIHTTFTQTVA-ATGRLSSVDPNLQNIP------------------- 47 Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +RS + G L+ AD + +E R++A ++G++ IKAF +G D + Sbjct: 48 -----NRNATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFH 102 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + + P+D+V+ +QR K M L Y T L Sbjct: 103 RYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYG-----LSTYGLSQQL------------ 145 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + ++ + V + L Sbjct: 146 ---------------------------GIPSKEAAALRSRYFQTFGKVHDYLESLVSNAR 178 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 RR + + A + Sbjct: 179 NTGYTQTMF--------------------------GRRRYFPALTSANRVARDAAERG-- 210 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M + IVL +HDE+V E Sbjct: 211 -------ALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKR 263 Query: 644 VGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 V L M + A +PL ++ Sbjct: 264 VTELVRDAMEHAVNIA--VPLDVSTGVGSDWQ 293 >gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa] Length = 976 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 79/790 (10%), Positives = 168/790 (21%), Gaps = 165/790 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 227 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 282 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D + V HN F+ + + I + T LAR Sbjct: 283 LMEFAPFFEDPFIKKVWHNYSFDIHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 339 Query: 107 SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ + K G+ + + + + + Sbjct: 340 YSLEGLTNDYRVMDAVLKDIPKTGKVSMKTIFGRKKVRKDGSEGK-TISIEPVEKLQRED 398 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195 +L+ Y D +T +L++ L + E + W L + Sbjct: 399 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKME 458 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246 G +D + ++++ ER+ + K D + +R F Sbjct: 459 TEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIE 518 Query: 247 --LITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-------- 294 G + ++ I I Sbjct: 519 NRNKRGETWPQSKTFKVPNDEGIATEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSG 578 Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L G S Q++ E Sbjct: 579 DVLRSLAGKIPTDHIYKIDDGQEFDEDGSSLELPEQDIEDTSPYGTAYEAFGGGKKGREA 638 Query: 353 IADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAW-IAGEDWKIKAFANGE 406 + I+ G + + I + G + Sbjct: 639 CHAIAALCEVFSIDKLISGFIVPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPNLQNQ 697 Query: 407 DIYVTTYAKAFN----------TPIDKVSKEQRAIGKVMEL-----ALGYQGGAKVFKTM 451 + K + D E R + + A G M Sbjct: 698 PVLEKDRYKIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 757 Query: 452 ASHCGLDLQQFSQN-------------------VKSTSTFEDWEQAESHHLWMQDQYPEF 492 + + + + + + + Sbjct: 758 NMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGL 817 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + K+ K W + V K + + Sbjct: 818 SWDWKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLL-------------- 863 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R + ++ + R VQ + D+ Sbjct: 864 ------------GRSRQFPNM---THAGPGQKGHVERAAINAP------VQGSAADVAMC 902 Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPL 663 M + G+ ++L VHDE++ E P T+ M+K + + L Sbjct: 903 AMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDL 962 Query: 664 KAEGYEAKRY 673 + AK + Sbjct: 963 AVDAKYAKSW 972 >gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5] gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5] Length = 595 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 97/679 (14%), Positives = 181/679 (26%), Gaps = 176/679 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET G+ Y++ L + D + D+ + Sbjct: 38 LAVDTETT--------GLDIYSDTFECRLVQFGTQD-EAWVVPVELGDVFIEDVRIAI-- 86 Query: 64 ETVMC--VAHNSLFERILFKKTLGIDIPSK--RWICTSVLARTNGL--------PSSLKN 111 + V N+ F+ + + GI++ R + T +LA+ SL+ Sbjct: 87 -GALKRMVLQNASFDLQVLDQCFGIEMEGLWPRVLDTQILAKLVDPRPFEAGGFGHSLEE 145 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ-LFGEYCKRDVEAT 170 ++ + + K + + + + + + Y D T Sbjct: 146 LIAKF------ISEDQAENVKKLMAKLAAEHKTTKAKIWSTIDLFHPEYLLYAGMDTIFT 199 Query: 171 RELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + K L PL E + + I+ +G+ +D++ L E +++ + Sbjct: 200 ARVCKSLTPLVPDVSRSLVPYEHKISEICSYIDRQGFLLDVEYSRSLAEKWLADQEVWEA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS-NITQLAKDL 277 + T L L G+ + +E ++L + Sbjct: 260 IAFTEYGVEKVN--STEDLAEGL-EEMGVKITGRTETGKRQVNAALLDKLVEDGNELAAI 316 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + + S+ R + A RT R S Q LP + Sbjct: 317 AQEAKKLGKWRKTWVQKFIDTRDSEDRCHTFINPLQA-RTSRMSITGIPAQTLPSSDW-- 373 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 VR C IA G + D E RVLA ++G+ Sbjct: 374 -------------------------IVRRCFIAEPGDVMASVDYQAQELRVLAALSGD-- 406 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + M Sbjct: 407 ---------------------------------------------------RNMIEAFEN 415 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + A + + V +A+ A + GV Sbjct: 416 GADLHQMTADAAQVPRKVGKTANFQKVYGGGAKALAEAVGISIPVAKRVHEAFSATYPGV 475 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 +L K L + G +IV RRL V Sbjct: 476 ERLSKKL---AMEAGRNG-----------------------YIVNAMGRRLP---VDSSR 506 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSE 635 +Y ++Q+ SRD+ C + + GY + L +HDEIV+ Sbjct: 507 TY----------------SALNYMIQSSSRDVTCRALIRLHEAGYTPYLRLPIHDEIVAS 550 Query: 636 TPDTPYF-SVGTLCSLMTK 653 P + + + LM + Sbjct: 551 LPASEAERAAAHIGHLMQE 569 >gi|255071395|ref|XP_002507779.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299] gi|226523054|gb|ACO69037.1| hypothetical protein MICPUN_113588 [Micromonas sp. RCC299] Length = 1974 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 61/540 (11%), Positives = 140/540 (25%), Gaps = 105/540 (19%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------LTDGIIRSS 235 D E L + G D ++ + + ++++ + S Sbjct: 1482 DAEMRLVPALAQMEATGVAFDPSVLCRQMRQANRRLREIEREADALVSKQVPGAEPAFSL 1541 Query: 236 RQTYALRMYLFLITGIDLV----------DMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + + LF + +L+ L+L S Sbjct: 1542 ASSADVARVLFENLKLPPPPCAVVQCGNGRRRLRANAEVLAALKDQSDLPALVLEHRTLS 1601 Query: 286 GSAILKLNTLSEA-------------VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + + E RLRG + + TGR + Q +P+ Sbjct: 1602 RC-VAMADEMVELALGGARRDEGNSSRGKITRLRGAIHQTN-TETGRLAMEEPNLQTVPK 1659 Query: 333 QERSEEILTQTIQ-------------ALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + + + VR+ +A G L+ A Sbjct: 1660 PRTFRMADAYDGRPGIIAPEGSAKAHKTREPSPGTEVGSEETLSVRNAFVAPPGAVLLSA 1719 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D +E RV+A ++G++ ++AF + P + Sbjct: 1720 DYRQLELRVMAHMSGDEGLVRAFNHE------------GAPPHHPDADPFR--------- 1758 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 + + K + + ++ + FA + + Sbjct: 1759 ---------------FLASRWRGVEVGKVSDADRAVAKQLAYGVLYGSGPARFAQEMGVT 1803 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + +A++A GV + K L E + + + + Sbjct: 1804 ESEARVQIEAFKASVPGVERWRKKLIETASRA-SPPSVETICGRRRILSSLAPDAALTAT 1862 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---- 615 + RR + + Q + D++ M Sbjct: 1863 GCEDAKRRFRLDRSADER------------------RAVNTACQGSAADVVKRAMIAVFD 1904 Query: 616 NATKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN-PSWAKGLPLKAEGYEAKRY 673 + VL +HDE++ E + + + ++M + + +PL + + Sbjct: 1905 ELDPSLATPVLQIHDELLFEVDASRVVEAARAVRAIMERAGDEFGFTVPLPVKVSAGANW 1964 >gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 113/288 (39%), Gaps = 61/288 (21%) Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +K F DIY + + F+ P++K + R GK+ ELALGY G + Sbjct: 1 MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIG---- 56 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A+ L + + +WRA + Sbjct: 57 ------------------------------------ALDTGLSEDELQPLVDSWRASNPN 80 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++Q W D+ +++ + + + IVLPS RRL Y K Sbjct: 81 IVQFWWDVDRCVKTAIKQRTATETHGIR------FVYQNGILFIVLPSGRRLCYVKPKIG 134 Query: 577 CSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + + R +YG K ENIVQAISRDILC M+ + IV Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMRTL--SHCFIVGH 192 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ ETP + +C + + P W GL L+A+GYE Y+K Sbjct: 193 VHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238 >gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis] Length = 2671 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 76/738 (10%), Positives = 165/738 (22%), Gaps = 144/738 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---------TVMCVAHNS--- 73 + ++ A W + ++ +D+ L + ++ Sbjct: 1980 DDVLLVGLAVCWGGKDAYYISL-QKEQDQADICPSLAPPPLDQTLSVKDRLWHIQSALQQ 2038 Query: 74 -----------LFE----RILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA 115 +++ + + + V +L N Sbjct: 2039 IRPGGSEPTIIMYDCIEQYKALLLACRVSLAGH-FQDPKVACWLLDPGSKERTLHNMVTN 2097 Query: 116 LNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 E G + S D V + E Sbjct: 2098 FLPYELPLLDGVGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGAL-----LEK 2152 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 K E + G + + ++ + +++ +L G Sbjct: 2153 EKLQDAFHRVEMPTQYCLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLA-GRSF 2211 Query: 234 SSRQTYALRMYLFLITGIDL---VD------------------------MSEGTLKSILS 266 S L LFL + T K +L Sbjct: 2212 SLTSHDDLAQVLFLELKLPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLE 2271 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSD-GRLRGTLQFYGASRTGRWSGC 323 LIL + + + L + ++ + G R + TGR S Sbjct: 2272 KLKALHPLPGLILEWKRITNALTKVVFPLQREKLLNPNLGMERIYPISQTHTATGRVSFT 2331 Query: 324 VFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLGLASD----- 362 QN+P+ + P Sbjct: 2332 EPNIQNVPKDFEIEMPRLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAER 2391 Query: 363 ------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G ++ A + +E R+LA ++ + I+ +G D++ + A+ Sbjct: 2392 GVSFFVSMRHAFVPFPGGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEW 2451 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + V+ R K + + Y GAK + +++ + + Sbjct: 2452 KMIDPEAVTDTVRQQAKQICYGIIYGMGAKSLGE-----QMGIEESDAACYIDTFKSRYT 2506 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + ++G R + Sbjct: 2507 GIQKFLKETVRSCTRDGFVQTILGR---------RRYLPAIKDSNPYAKSHAERQAVNTT 2557 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + V ++ + PS + V+ T + R R Sbjct: 2558 VQGSAADIVKTATV--NIQKRLEETFPSVPKSHEHPVQA------GGTGRAERLRHRPPP 2609 Query: 597 LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 G +L +HDE++ E V + M Sbjct: 2610 T----------------------RGAFFILQLHDELLYEAAQEDAIQVAQIIKKEMENAM 2647 Query: 656 SWAKGLPLKAEGYEAKRY 673 + L+ + + Sbjct: 2648 K--LSVKLRVKVKMGPSW 2663 >gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2] gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2] Length = 608 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 183/699 (26%), Gaps = 175/699 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET + Y I L + + + + Sbjct: 35 LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 EE KA +AR K + + + Y D Sbjct: 145 ELTKFY---IDPATAEEVKASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPESSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKAEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E +D R+ + A RT R S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDADDRVHPGINPLQA-RTARMSTTSPSAQNLPANDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ +V D E RVLA +A + Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALAND- 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +TM Sbjct: 407 ----------------------------------------------------RTMIRAFE 414 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + + A + + V + A + G Sbjct: 415 EEADLHQVTADAAGMDRKVGKMANFLTVYGGGAGKLATNAGITFPEAKKVLDIFAATYPG 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K L A + ++ P+ RRL + Sbjct: 475 VTDLSKSLQREAANLGY--------------------------VITPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 G +VQ+ SRD+ + + G + L +HDE+++ Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLA 549 Query: 635 ETPDTPYF-SVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 P+ + + +M + G+ + + R Sbjct: 550 SVPEAEAEVTAKEIGRIMEQTFR---GVLINTDPEVGGR 585 >gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana] gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana] Length = 1548 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 94/706 (13%), Positives = 170/706 (24%), Gaps = 174/706 (24%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMC----VAHN----SLFERI 78 I A W+ PV + + + + + D + +HN Sbjct: 933 EIHGIAICWNCSPVYYVNLNKDLPNLECVEKQKLIEDAVIGKSEVLASHNMLDVIKSRWN 992 Query: 79 LFKKTLGIDIPSKRW---ICTSVLARTNGLPSS-LKNA--CLALNFSEHLTK-------- 124 K +G + S CT LP L T Sbjct: 993 KISKIMGNVLKSPAISIQRCT-----RLNLPEGIRDELVDGSWLMMPPLHTSHTIDMSIV 1047 Query: 125 ------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY-----CKRDVEATREL 173 EE + + P AN W+ C R V TR L Sbjct: 1048 IWILWPDEERHSNPNIDKEVKKRLSPEAAEAANRSGRWRNQIRRVAHNGCCRRVAQTRAL 1107 Query: 174 FKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L + + G ID++ L+ + ++ + + L++ Sbjct: 1108 CSALWKILVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKK 1167 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDL 277 +L + LF + + + T K L ++ Sbjct: 1168 AFELAGMTFSLHN-PADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRYSEWLIAF 1226 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + D RL L + Sbjct: 1227 P-------------YIAFCFFIIKDNRLFELLS-------------------------AS 1248 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396 + G ++ R + L+ AD + IE R++A + + Sbjct: 1249 VEHEVEFKLDKNGRDVSSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDS 1308 Query: 397 WKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 I + E D++ AK D VS R K + + Y G Sbjct: 1309 SLISKLSQPEGDVFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMG----------- 1357 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 A + + + +++++ Sbjct: 1358 ---------------------------------ANRLAEQLECTSDEAKEKIRSFKSSFP 1384 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V + + L + + ++I RR S +K Sbjct: 1385 AVTSWLNETISFCQEKGWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIKF 1444 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----------------- 618 + + + R+ ++ Q + DI+ M N Sbjct: 1445 GNAKEKS---KAQRQA------VNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSE 1495 Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSW 657 K I+L VHDE+V E + L M S Sbjct: 1496 TRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVSL 1541 >gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis] gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis] Length = 2181 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 90/668 (13%), Positives = 181/668 (27%), Gaps = 117/668 (17%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQ------------SAMPSDLLQYLRDETVMCVAHNS 73 + + + A+ +D V + + L L + + ++H++ Sbjct: 1603 DSSYLAGIAFCLNDNVVYYMNMQPEEEQQQQQQQVGSELKVQQLSSLLSRQDLTLLSHDA 1662 Query: 74 LFERILFKKTLG--IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGK 129 + + ++ + DI V S N C G Sbjct: 1663 KEQLKVLRQAVPQLNDIQVL-LEDPKVANWLLQPDKTLSFHNMCQQFAPECGALANLCGS 1721 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLW 188 G S ++A + R +L+ + E + Sbjct: 1722 GR-GYSSFGLDASSAIMAKVRASIEACVTVHILNGQLENLERIGTGQLLKFFRELEMPIQ 1780 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G+ + +L + + K+L+ I +L G + T A+ L Sbjct: 1781 MSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELH-GSRFNLGSTQAVAKVL--- 1836 Query: 249 TGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 G+ T + IL + LILN S + L + R+ G Sbjct: 1837 -GLHRKANGRVSTSRQILEKIDSP--ISQLILNYRKLSMLLAKSMQPLLK-CCQANRVHG 1892 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 Y A TGR S QN+ + I RS Sbjct: 1893 QSITYTA--TGRISMSEPNLQNVAKD-----------------FHIELGKEQLKISCRSA 1933 Query: 368 IIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + L+ AD +E R+LA ++ + ++ + +D++ A VS+ Sbjct: 1934 FAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWNKIDESNVSE 1993 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + R K + + Y G + L + + + + +++ + + Sbjct: 1994 QLRNGTKQICYGIVYGMGMRSLSE-----ALKCTEQEAQMITEQFHLAYPGIKAYTMKVV 2048 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + G L + L + Sbjct: 2049 KFARNNGYVETITGRRRYLD---------HINSGEVQLKTQAERQAINSTIQGSAADI-- 2097 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + + R Y KL ++ Sbjct: 2098 ------AKSAILRMEKNLGR--------------------------YREKL------GLA 2119 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 KN ++VL +HDE++ E P V + SL M +PL+ Sbjct: 2120 ------------KNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENCVK--LNVPLRV 2165 Query: 666 EGYEAKRY 673 + + + Sbjct: 2166 KLKIGRSW 2173 >gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis] Length = 1711 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 87/673 (12%), Positives = 179/673 (26%), Gaps = 126/673 (18%) Query: 26 EQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLLQYLR--DETVMCVAHNSLFERIL 79 + + + W V D T ++ D+ DE V+ +A ++ Sbjct: 1127 KDPKLVGLSLCWSPTVVYYLDIQILKTRHPSVIEDIQNIFESFDEDVIQIAFCIK-DQ-- 1183 Query: 80 FKKTLGIDIPSK----RWICTSVLARTNGL---PSSLKNACLALNFSEHLTKMEEGKALI 132 FK L + W + + L + Sbjct: 1184 FKWMLNSGVHGVTTSNNWQDPMIASWLMDPDNIKQGLFSLVEHYCSEHL----------- 1232 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG------ERD 186 + + + V + ++ +L ++L ++ E Sbjct: 1233 -YLFQDTKYDWDVNRPSYTSVSSEKVCCVESIASYILMLQLEEQLSGMNMWQHFTGVEMP 1291 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 + G +D L+ + + + L E K+ + + LF Sbjct: 1292 HMYCVALLELNGIEVDNSLLKRYRLELHSASLALQEKAWKILGRKF-NLSNPKEVSKVLF 1350 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRL 305 + ++ R + K+ L ++ GRL Sbjct: 1351 QEL-----RLXXXXXXXXXXXXXXXXXYPCIMSWRTVNYALN--KVILLINSLPPSCGRL 1403 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + TGR Q++P+ Q + ++ S C+R Sbjct: 1404 HHKC--LTLTNTGRMIMSEPNIQSIPK------------QFSITKGSKSEADSEQSFCLR 1449 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP---ID 422 + +A NGK L+ AD + IE R+LA ++G++ I AF + + A F + ID Sbjct: 1450 NIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSEISSID 1509 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 V+ +QR K + Y GA+ ++ + S + + + Sbjct: 1510 DVTDKQRDTTKQTCYGILYGMGAQTL-----AQQMNTSETDAQNAMDSFMNSYPMVKVYF 1564 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + Q E + + G R + + + + Sbjct: 1565 NRLVAQCKEKGYIETISGR---------RRYLPEIKSVRLKMRSHAERQAVNSTIQGSAA 1615 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-SQLMRERTYGGKLTENI 601 ++ + + L T Q R T Sbjct: 1616 DIV---------------------KMATYKIHCAVASLGWNTLHQNTRSNT--------- 1645 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKG 660 + +V +HDE++ E + +V + M Sbjct: 1646 ------------------TDFFLVHHIHDELIYEVDEKKLHEAVSVIERCMVDAFP--MS 1685 Query: 661 LPLKAEGYEAKRY 673 + L K + Sbjct: 1686 VKLAVRIKVGKLW 1698 >gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e] gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e] Length = 306 Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats. Identities = 90/289 (31%), Positives = 121/289 (41%), Gaps = 45/289 (15%) Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 EL LGY+GG F T A + GLDL + ++ + T W + W + Q + Sbjct: 18 AHNCELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAK 77 Query: 492 FA------------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--- 536 + DK + C+ +K+ WR H + W+DL +G V+ G Sbjct: 78 RPPHPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREF 137 Query: 537 ------------SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV----------- 573 +I R + + + LPS R L Y + Sbjct: 138 WAGAHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDED 197 Query: 574 -------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + N T Q T+GGK ENIVQA+ RD+L M N GY IVL Sbjct: 198 GRINTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVL 257 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +VHDE+V ETPDT ++V L LM P WA G PL AEG E KRY K Sbjct: 258 SVHDELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306 >gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix jacchus] Length = 2550 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 84/736 (11%), Positives = 185/736 (25%), Gaps = 145/736 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----RDETVMC---VAHNSL-------- 74 + A W + ++ S++ L D ++ + H Sbjct: 1860 VVGLAVCWGGRDAYYFSL-QKEQKHSEISASLVPPSLDPSLTLKDRIWH-LQSCLQKESD 1917 Query: 75 -------FE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS 119 ++ + + GI + + + V S +L + L Sbjct: 1918 EERSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHE 1976 Query: 120 -EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L ME + + + + + + + + + R Sbjct: 1977 LPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR-- 2034 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E + G + ++ + ++ +L G S + Sbjct: 2035 ---KVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLA-GHSFSFTSS 2090 Query: 239 YALRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNIT 271 + LFL + T K +L+ Sbjct: 2091 DDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLKAL 2150 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQ 326 LIL + + + L + R+ Q + A TGR + Sbjct: 2151 HPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPN 2208 Query: 327 PQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------------ 358 QN+PR + +L + +G ++ Sbjct: 2209 IQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERAAERGM 2268 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 S +R + G ++ AD + +E R+LA ++ + I+ +G D++ + A+ Sbjct: 2269 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIAAEWKM 2328 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + V + R K + + Y GAK + +++ S + Sbjct: 2329 IEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGI 2383 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 ++G R G+ + Sbjct: 2384 NQFMRETVKNCKRDGFVQTILGR---------RRYLPGIKENNPYHKAHAERQAINTTVQ 2434 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + V + + + G + + G L Sbjct: 2435 GSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDQ--------TGLLP 2478 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657 + +Q M + G+ I L +HDE++ E + V + M Sbjct: 2479 KRKLQG---------MFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAVK- 2527 Query: 658 AKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2528 -LSVKLKVKVKIGASW 2542 >gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens] Length = 1762 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 1054 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1113 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 1114 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1172 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 1173 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1232 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 1233 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1287 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 1288 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1346 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 1347 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1406 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 1407 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1464 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 1465 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 1524 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 1525 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 1579 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 1580 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 1630 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 1631 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 1682 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 1683 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 1723 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 1724 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 1754 >gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens] gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens] Length = 2270 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 1562 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1621 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 1622 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1680 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 1681 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1740 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 1741 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1795 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 1796 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1854 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 1855 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1914 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 1915 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1972 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 1973 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2032 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 2033 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2087 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 2088 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2138 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 2139 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2190 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 2191 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2231 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 2232 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2262 >gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens] Length = 2725 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 2017 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 2076 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 2077 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2135 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 2136 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2195 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 2196 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2250 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 2251 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2309 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 2310 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2369 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 2370 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2427 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 2428 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2487 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 2488 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2542 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 2543 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2593 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 2594 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2645 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 2646 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2686 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 2687 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2717 >gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens] Length = 2214 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 1506 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1565 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 1566 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1624 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 1625 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1684 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 1685 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1739 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 1740 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1798 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 1799 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1858 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 1859 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1916 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 1917 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 1976 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 1977 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2031 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 2032 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2082 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 2083 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2134 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 2135 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2175 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 2176 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2206 >gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens] Length = 2590 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 1882 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1941 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 1942 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2000 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 2001 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2060 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 2061 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2115 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 2116 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2174 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 2175 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2234 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 2235 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2292 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 2293 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2352 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 2353 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2407 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 2408 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2458 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 2459 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2510 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 2511 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2551 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 2552 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2582 >gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638] gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638] gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68] Length = 231 Score = 177 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 11/234 (4%) Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 F T A LDL + + + +A+S + + + + +++ AC+ + Sbjct: 3 AFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVFI-ACDSL 61 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K+ WR H W +L + ++ L +RR + I LPS R Sbjct: 62 KRLWRRAHPATCDFWYELERTVRTAIATP-----QKTLYCGYLKIRRDGAWLRIQLPSGR 116 Query: 567 RLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + Y KG+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+L M G Sbjct: 117 AVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAG 176 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 Y IVLTVHDEI+SE PD+P +S + L+ P WA +PL A G+E+ RYRK Sbjct: 177 YSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230 >gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 181 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 3/176 (1%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AY+++ PVK+WD T+ MP+DL YL D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K L ID+P R T V A +GLP +L + C N + Sbjct: 64 PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K +EGKALI FCK +S T H + W F Y D+ A RE+++ L Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHL 179 >gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis] gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis] Length = 2193 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 89/671 (13%), Positives = 185/671 (27%), Gaps = 120/671 (17%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL-----QYLRDETVMCVA 70 K ++ + + I ++ D V E +P+ L + + + + Sbjct: 1620 KQALFQVDDSSFIAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLV 1679 Query: 71 HNSLFERILFKK----TLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTK 124 H++ + I I V S KN C Sbjct: 1680 HDAKEQVKALLHGVPQLQNIGIK---VEDPKVGHWLLEPDKTVSFKNMCQQFAPECTALA 1736 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 G G S ++A + R + E Sbjct: 1737 NLCGSGR-GYSSHGLDSSSAILPKLRASIEACVTVHILKGQIENLER---------IEVE 1786 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + ++ + G+ + +L + + K++ I K+ + T A+ Sbjct: 1787 MPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSKF-NLGSTQAVANV 1845 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 L L T + +L +LILN + + + L R Sbjct: 1846 LGLHRK---PHGRVSTSRQVLEKLGSP--ISELILNHRKLNMQIVKGMQPLIR-CCKANR 1899 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + G + A TGR S QN+ + + ++ Sbjct: 1900 IHGHSITHTA--TGRISMSEPNLQNV----AKDFDIRMGPDSVRISC------------- 1940 Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 RS + + L+ AD +E R+LA ++ + + + +D++ A + P + Sbjct: 1941 RSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAE 2000 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+++ R+ K + + Y G + L + + + + ++ Sbjct: 2001 VTEQMRSGTKQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTE 2055 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + + G L ++ + + V SA + Sbjct: 2056 KVLKFARKLGYVETITGRRRYLDHINSGEQN--------LIKQAERQAVNTTIQGSAADI 2107 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 A L M ++ L + EN +Q Sbjct: 2108 AKRAILDMDKNIGRYWKKLG---------------------------------VEENSIQ 2134 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662 +VL +HDE+V E P+ + L M +P Sbjct: 2135 --------------------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVP 2174 Query: 663 LKAEGYEAKRY 673 LK + + + Sbjct: 2175 LKVKIKMGESW 2185 >gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera] Length = 1864 Score = 177 bits (449), Expect = 5e-42, Method: Composition-based stats. Identities = 90/661 (13%), Positives = 180/661 (27%), Gaps = 116/661 (17%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMP-------SDLLQYLRD----------ETVMCV 69 + A AW+ + + + + L + + + Sbjct: 1281 DKKLYGAAIAWESNIAYYISFSNEQDLKISGKEQMKLFKELLANTILYVKCFATKEIFKT 1340 Query: 70 AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKME 126 + GI I S +++ V + + + Sbjct: 1341 ----------LYECCGI-IASCKFLDPKVANWLYDGNIYEKTFNDMVKEYFPQGCFIIKK 1389 Query: 127 EGKALIARFCKGSIDSPPYD-CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 G + P + A V +W + K + + L D E Sbjct: 1390 MGTCYDTGPGLCIKSAIPGELRACAEAVLSWHMA---DKLIDKLEQLSPTLLYTFKDIEM 1446 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + +L + G + L + L +I +E L+E L + + + L Sbjct: 1447 KIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKKF-NFSSSKEVGEIL 1505 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 L G + K++L S+ +L+++ + + + L R+ Sbjct: 1506 GLYKGKKI-----SVNKAVLGQSDHP--ISNLVMSWRKLNVTKSKIIYPLLNLAQHSSRI 1558 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G ++ TGR S QN+PR + VR Sbjct: 1559 HG--NCVTSTLTGRISMHEPNLQNVPRD-------------------FNSKDNSFTISVR 1597 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 I + G ++ AD +E R+LA + + DI+ AK + ++V Sbjct: 1598 MAFIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSENEVD 1657 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 + R K + + Y G K L + + S + + Sbjct: 1658 DKMRRHTKQLCYGMIYGMGVKTLAE-----NLSVDEVKAKEFLESFMNAYPGISKWLNNV 1712 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVA 544 ++ ++ R G+ + V SA + Sbjct: 1713 LEEARINGYITTILER---------RRMFPGLTSINPMEKSQAERQAVNTKVQGSAADIV 1763 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + R + +S+ +R + + Sbjct: 1764 KKAMIDIEKRMRFEFST--------------SLPIMPANSSRKLRSNSKETQ-------- 1801 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPL 663 K GY +VL +HDE++ E V T+ M + LP+ Sbjct: 1802 -------------HKGGY-LVLQLHDELLYEVNIYDLRQVATIVKESMEQVCQLTVPLPV 1847 Query: 664 K 664 K Sbjct: 1848 K 1848 >gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46] Length = 225 Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 58/271 (21%) Query: 416 AFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 1 MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------------------- 39 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A++ + + + +WR + ++ WK E Sbjct: 40 -------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAIN--- 77 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------AT 584 ++ +R+ + L K + I LPS R L Y + + Sbjct: 78 ---TVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ E P + Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNG-L 193 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + ++M K WAKGL L ++G+ + Y K Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224 >gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens] gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct] Length = 2590 Score = 176 bits (447), Expect = 8e-42, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 186/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 1882 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1941 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 1942 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2000 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 2001 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2060 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 2061 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2115 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 2116 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2174 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 2175 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2234 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 2235 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2292 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 2293 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2352 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 2353 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2407 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 2408 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2458 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 2459 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2510 Query: 583 AT-SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + + L R+R G + G +L +HDE++ E + Sbjct: 2511 SDQTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 2551 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 2552 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2582 >gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 169 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 8/170 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L Y+ D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTR-ANHVQAWQLFGEYCK 164 GK L+ F CK + + + WQ F +Y + Sbjct: 121 PRQKI--TAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQ 168 >gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum] gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum] Length = 1200 Score = 176 bits (447), Expect = 9e-42, Method: Composition-based stats. Identities = 86/721 (11%), Positives = 192/721 (26%), Gaps = 185/721 (25%) Query: 34 AYAWDDEPVKLWDRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPS 90 +Y + + L D +++ L + + +++N + F K + Sbjct: 537 SYIIEKYFITLIDNVGGLVEEKLKFMVEILENGLIKKISYNCS-DGYKPFIKQYPY-MKP 594 Query: 91 KRWICTSVLARTNG-----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + A S + K E K + + + + Sbjct: 595 INSFDIKIAAWLLNSDGGNNGYSFEKVQEY-------GKDESIKTIQNISNRNIMQNQSE 647 Query: 146 DCTRANHVQ----AWQLFGEYCKRDVEATRELFKRLIPLSD---------GERDLWLLDQ 192 + + + +D+ + +++ L L E + L Sbjct: 648 KIKKLINEENEFSKENTNYGSFSQDIVYSLKIYLVLKNLLYDKDLSYNFIEEMSVVSLIS 707 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++ ++ + ++L+ ++ L D + + R + ++ + Sbjct: 708 KMELYGILLETKILNQYKKLLDEKSANL---CEYFRDNNLLNPRSIPQVTKVIYQDLKLK 764 Query: 253 LV-----DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLR 306 L + + +L I + + + + +L ++ E S + Sbjct: 765 LPHPPPTKVDKKSLNEIKALNPNQEEFINNLLIYRNLEKINKTYISAYLELADSYYDKFH 824 Query: 307 GTLQ-------------FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 G + TGR S C QN+ R + QA ++ + + Sbjct: 825 QNQNESNKKAFIKCDWLQCG-TSTGRLSSCNPNMQNVCRNTSIISFDDEEDQASSQIDDL 883 Query: 354 --------------------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + +R I+ +G ++ D IE RV++ + Sbjct: 884 FLMTHIEDDQNQNQNHNQNQNQNQNQETINIRDAFISRDGYTMLAYDYNQIELRVMSHFS 943 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + I F N +D+ +K N I+ V+ ++R K + + Y G + Sbjct: 944 NDKHLINYFNNNQDVIRRMASKLLNKEINDVTTDEREKTKRVVYGIMYGIGPQSL----- 998 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 K+ +A EL+ + + Sbjct: 999 ---------------------------------------GKLLKISTSAAELLINNFYKE 1019 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + D + S R ++ Sbjct: 1020 FPQISSFITTTKNSLKQ-------------------------NDPEVRTISGRIRKLGEI 1054 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI--------- 624 K + I+Q S DI+ + M DI Sbjct: 1055 KNSFD-----------ISIAKRRSVNTIIQGSSADIIKKSMVKINNFFGDICSIFNNNNN 1103 Query: 625 ---------------VLTVHDEIVSETP----DTPYFSVGTLCSLMTKNPSWAKGLPLKA 665 +L +HDE++ E P + + + LM +K LK Sbjct: 1104 NNNSNNNNNQISPRFLLQIHDELIFEVPTFLIEEHRVDL-YIKYLMESV---SKDFNLKV 1159 Query: 666 E 666 + Sbjct: 1160 D 1160 >gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c] gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c] Length = 252 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 91/258 (35%), Positives = 128/258 (49%), Gaps = 13/258 (5%) Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++KEQR IGKV ELALGY GG F A+ +DL+ + + ++A Sbjct: 1 MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQ--AVFPPLLLQEATELLE 58 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 W + + AC++ K+AWR H + W+ L + + Sbjct: 59 WTKANHRPTFDLSDRAWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT--- 115 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKL 597 + ++ + + + LPS R L Y+ + G SY+ T T + R TYGGKL Sbjct: 116 --CCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA+SRD+L M GY IVLTVHDEI++E D P F+ L +LM P W Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233 Query: 658 AKGLPLKAEGYEAKRYRK 675 A+GLPL AEG++ RYRK Sbjct: 234 AEGLPLAAEGFDTYRYRK 251 >gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus] gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus] gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus] Length = 2593 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 88/734 (11%), Positives = 187/734 (25%), Gaps = 141/734 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + + ++ +P L L + + + Sbjct: 1903 LVGLAVCWGGKDAYYFSLQKEQKHSEISASLIPPSLDPSLTVKDRLRHLQSCFHKESDKE 1962 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN-ACLALNFSEH 121 +++ + + GI + + + V S L + L Sbjct: 1963 RSVIIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSKEPTLHSIVSHFLPHELP 2021 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 L + E I + + V++ +F + + +E + + Sbjct: 2022 LLEEIETGQGIQSLGLNVSTTHSGRYRAS--VESILIFNSMNQLNSLLKKENLQDVF--Y 2077 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E + G + ++ + ++ +L G S + + Sbjct: 2078 KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLA-GHSFSFTSSDDI 2136 Query: 242 RMYLFLITGIDLVDMSE---------------------------GTLKSILSHSNITQLA 274 LFL + + T K +L+ Sbjct: 2137 AEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSKGVLNKLRALHPL 2196 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQN 329 LIL + + + L + R+ Q + A TGR + QN Sbjct: 2197 PGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQN 2254 Query: 330 LPRQ----------------------------ERSEEILTQTIQALNRGETIADPLGLAS 361 +PR R ++ + E +D S Sbjct: 2255 VPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQTKVEERASDRGMPFS 2314 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2315 VSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIEP 2374 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + V R K + + Y GAK + +++ S + Sbjct: 2375 ESVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGISHF 2429 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISA 540 ++G R G+ + SA Sbjct: 2430 MRETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTRVQGSA 2480 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + + + +++ H S Q R K Sbjct: 2481 ADIVKIATVNIQKQLETFHSTFKS-------------HGHREGLLQSERTGLLPKKKL-- 2525 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 Q M + G+ I L +HDE++ E + V + M Sbjct: 2526 --QG---------MFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAIK--L 2571 Query: 660 GLPLKAEGYEAKRY 673 + L+ + + Sbjct: 2572 SVKLRVKVRIGASW 2585 >gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus] Length = 2273 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62 + AV+ A W + ++ S++ L Sbjct: 1579 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1637 Query: 63 ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111 D V ++ + + GI + + V S L + Sbjct: 1638 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1692 Query: 112 ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + ME G + + + + ++ +F + + Sbjct: 1693 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1749 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +E + E + G + ++ + ++ +L G Sbjct: 1750 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1806 Query: 231 IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263 S + LFL + T K Sbjct: 1807 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1866 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320 IL+ LIL S + + L + ++ R+ R + TGR Sbjct: 1867 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 1926 Query: 321 SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358 + QN+PR Q Sbjct: 1927 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 1986 Query: 359 -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + Sbjct: 1987 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2046 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ D V + R K + + Y GAK + +++ S Sbjct: 2047 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2101 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ + + ++G R G+ Sbjct: 2102 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2152 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + V + + + R S + N T L + + Sbjct: 2153 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2206 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 G M + G+ I L +HDE++ E + V + M Sbjct: 2207 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2246 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2247 CAIK--LSVKLKVKVKIGASW 2265 >gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus] Length = 2398 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62 + AV+ A W + ++ S++ L Sbjct: 1704 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1762 Query: 63 ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111 D V ++ + + GI + + V S L + Sbjct: 1763 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1817 Query: 112 ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + ME G + + + + ++ +F + + Sbjct: 1818 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1874 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +E + E + G + ++ + ++ +L G Sbjct: 1875 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1931 Query: 231 IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263 S + LFL + T K Sbjct: 1932 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1991 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320 IL+ LIL S + + L + ++ R+ R + TGR Sbjct: 1992 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 2051 Query: 321 SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358 + QN+PR Q Sbjct: 2052 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 2111 Query: 359 -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + Sbjct: 2112 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2171 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ D V + R K + + Y GAK + +++ S Sbjct: 2172 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2226 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ + + ++G R G+ Sbjct: 2227 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2277 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + V + + + R S + N T L + + Sbjct: 2278 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2331 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 G M + G+ I L +HDE++ E + V + M Sbjct: 2332 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2371 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2372 CAIK--LSVKLKVKVKIGASW 2390 >gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus] Length = 2119 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62 + AV+ A W + ++ S++ L Sbjct: 1425 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1483 Query: 63 ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111 D V ++ + + GI + + V S L + Sbjct: 1484 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1538 Query: 112 ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + ME G + + + + ++ +F + + Sbjct: 1539 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1595 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +E + E + G + ++ + ++ +L G Sbjct: 1596 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1652 Query: 231 IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263 S + LFL + T K Sbjct: 1653 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1712 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320 IL+ LIL S + + L + ++ R+ R + TGR Sbjct: 1713 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 1772 Query: 321 SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358 + QN+PR Q Sbjct: 1773 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 1832 Query: 359 -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + Sbjct: 1833 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 1892 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ D V + R K + + Y GAK + +++ S Sbjct: 1893 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 1947 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ + + ++G R G+ Sbjct: 1948 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 1998 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + V + + + R S + N T L + + Sbjct: 1999 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2052 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 G M + G+ I L +HDE++ E + V + M Sbjct: 2053 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2092 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2093 CAIK--LSVKLKVKVKIGASW 2111 >gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus] Length = 2587 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62 + AV+ A W + ++ S++ L Sbjct: 1893 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1951 Query: 63 ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111 D V ++ + + GI + + V S L + Sbjct: 1952 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 2006 Query: 112 ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + ME G + + + + ++ +F + + Sbjct: 2007 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 2063 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +E + E + G + ++ + ++ +L G Sbjct: 2064 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 2120 Query: 231 IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263 S + LFL + T K Sbjct: 2121 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 2180 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320 IL+ LIL S + + L + ++ R+ R + TGR Sbjct: 2181 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 2240 Query: 321 SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358 + QN+PR Q Sbjct: 2241 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 2300 Query: 359 -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + Sbjct: 2301 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2360 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ D V + R K + + Y GAK + +++ S Sbjct: 2361 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2415 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ + + ++G R G+ Sbjct: 2416 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2466 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + V + + + R S + N T L + + Sbjct: 2467 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2520 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 G M + G+ I L +HDE++ E + V + M Sbjct: 2521 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2560 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2561 CAIK--LSVKLKVKVKIGASW 2579 >gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus] gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus] Length = 2265 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62 + AV+ A W + ++ S++ L Sbjct: 1571 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1629 Query: 63 ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111 D V ++ + + GI + + V S L + Sbjct: 1630 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1684 Query: 112 ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + ME G + + + + ++ +F + + Sbjct: 1685 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 1741 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +E + E + G + ++ + ++ +L G Sbjct: 1742 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 1798 Query: 231 IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263 S + LFL + T K Sbjct: 1799 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 1858 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320 IL+ LIL S + + L + ++ R+ R + TGR Sbjct: 1859 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 1918 Query: 321 SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358 + QN+PR Q Sbjct: 1919 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 1978 Query: 359 -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + Sbjct: 1979 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2038 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ D V + R K + + Y GAK + +++ S Sbjct: 2039 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2093 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ + + ++G R G+ Sbjct: 2094 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2144 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + V + + + R S + N T L + + Sbjct: 2145 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2198 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 G M + G+ I L +HDE++ E + V + M Sbjct: 2199 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2238 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2239 CAIK--LSVKLKVKVKIGASW 2257 >gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus] gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus] gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus] gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus] gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus] Length = 2544 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 91/741 (12%), Positives = 183/741 (24%), Gaps = 146/741 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---------------------- 62 + AV+ A W + ++ S++ L Sbjct: 1850 CDGAVVVGLAVCWGAKDAYYLSL-QKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQ 1908 Query: 63 ---DETVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN- 111 D V ++ + + GI + + V S L + Sbjct: 1909 KKSDRERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSI 1963 Query: 112 ACLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + ME G + + + + ++ +F + + Sbjct: 1964 VTSFLPHELALLEGMETGPGIQSLGLNVNTEHSGRYRASV---ESVLIFNSMNQLNSLLQ 2020 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +E + E + G + ++ + ++ +L G Sbjct: 2021 KENLHDIF--CKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLA-G 2077 Query: 231 IIRSSRQTYALRMYLFLITGIDL---------VDM------------------SEGTLKS 263 S + LFL + T K Sbjct: 2078 HSFSFTSADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKD 2137 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRW 320 IL+ LIL S + + L + ++ R+ R + TGR Sbjct: 2138 ILNKLKGLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPVSQSHTATGRI 2197 Query: 321 SGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------ 358 + QN+PR Q Sbjct: 2198 TFTEPNIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKA 2257 Query: 359 -----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + Sbjct: 2258 SDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIA 2317 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+ D V + R K + + Y GAK + +++ S Sbjct: 2318 AEWKMIEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKS 2372 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ + + ++G R G+ Sbjct: 2373 RYKGINHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAI 2423 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + V + + + R S + N T L + + Sbjct: 2424 NTTVQGSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLK 2477 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 G M + G+ I L +HDE++ E + V + M Sbjct: 2478 G-------------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEME 2517 Query: 653 KNPSWAKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2518 CAIK--LSVKLKVKVKIGASW 2536 >gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis] gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis] Length = 2086 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 89/671 (13%), Positives = 181/671 (26%), Gaps = 115/671 (17%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVA 70 ++ + A + A+ D + + + L L + + Sbjct: 1505 LYQVDDGAYLAGIAFCLSDNVAFYMNMQAEEELEQQPVSTEQKVELLCSLLSRPELTLLI 1564 Query: 71 HNSLFERILFKKTLGIDIPSKRW--ICTSVLARTN--GLPSSLKNACLALNFSEHLTKME 126 H+ + ++ L + + V S +N C Sbjct: 1565 HDGKDQLKALRQALP-QLKGMQVKLEDPKVGNWLLQPDKTLSFQNMCQQFAPECTALSHL 1623 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGER 185 G G S ++A + R +L+ + E Sbjct: 1624 CGSGR-GYSSYGLDASSAILGKVRASIEACLSVHILNGQLENLERIGTGQLLKFFRELEM 1682 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + + + G+ + +L + + KKL+ I +L G + T A+ L Sbjct: 1683 PIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFELH-GSRFNLGSTQAVAKVL 1741 Query: 246 FLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 G+ T + IL + LIL+ S + L + R Sbjct: 1742 ----GLHRKANGRISTSRQILEKLDSP--ISQLILDHRKLSMVLAKNMQPLLK-CCQANR 1794 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + G Y A TGR S QN+ + + + + Sbjct: 1795 VHGQSITYTA--TGRISMSEPNLQNVAKDFLVDLGQEK-----------------INISC 1835 Query: 365 RSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 RS ++S L+ AD +E R+LA ++ + +K + +D++ A Sbjct: 1836 RSAFVSSNEKHCLLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWNKIAESD 1895 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 VS++ R K + + Y G + L + + S + +++ Sbjct: 1896 VSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFHLAYAGIKAYAS 1950 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + G L + L + Sbjct: 1951 KVVKFARNNGYVETITGRRRYLD---------HINSGEPQLKNQAERQAINSTIQGSAAD 2001 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 ++ Y KL Sbjct: 2002 IAKSAILRMEKN----------------------------------IARYREKL------ 2021 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662 ++ +N ++VL +HDE++ E P V + SL M +P Sbjct: 2022 GLA------------ENAVNLVLHLHDELIFEVPADKAKKVAKVLSLTMENCVK--LNVP 2067 Query: 663 LKAEGYEAKRY 673 L+ + + + Sbjct: 2068 LRVKLKIGRSW 2078 >gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus] Length = 2306 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 83/734 (11%), Positives = 183/734 (24%), Gaps = 141/734 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W ++ +P L L + M + Sbjct: 1616 VVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQKASDKE 1675 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHL 122 +++ + + G+ + + + V S L + + E Sbjct: 1676 RSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFLPCELP 1734 Query: 123 --TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +ME G+ + + S++ + + + + +L + Sbjct: 1735 LLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQK--EKLQDIFHKV 1792 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 1793 ---EMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 1848 Query: 241 LRMYLFLITGID---------LVDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 1849 IAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHP 1908 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 1909 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 1966 Query: 329 NLPR---------------------------QERSEEILTQTIQALNRGETIADPLG-LA 360 N+PR + E+ T + + E A G Sbjct: 1967 NVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPF 2026 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ GED++ + A+ Sbjct: 2027 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMME 2086 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2087 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINH 2141 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2142 FMKETVKNCRRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQGS 2192 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + + G + + + + + Sbjct: 2193 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGVLQSDKTGLFPKRRLPGVFCP 2244 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 + G +L +HDE++ E + V + M Sbjct: 2245 V------------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--L 2284 Query: 660 GLPLKAEGYEAKRY 673 + LK + + Sbjct: 2285 SVKLKVKVKIGASW 2298 >gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus] Length = 2585 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 83/734 (11%), Positives = 183/734 (24%), Gaps = 141/734 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W ++ +P L L + M + Sbjct: 1895 VVGLAVCWGGRDAYYCSLQKEQQHSEISASLVPPSLDPRLTMKDRMWHLQSCLQKASDKE 1954 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHL 122 +++ + + G+ + + + V S L + + E Sbjct: 1955 RSVIIYDFIRSYKILLLSCGVSLE-QSFEDPKVACWLLDPDSKEPTLHSIVTSFLPCELP 2013 Query: 123 --TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +ME G+ + + S++ + + + + +L + Sbjct: 2014 LLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQK--EKLQDIFHKV 2071 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 2072 ---EMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2127 Query: 241 LRMYLFLITGID---------LVDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 2128 IAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLKALHP 2187 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 2188 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2245 Query: 329 NLPR---------------------------QERSEEILTQTIQALNRGETIADPLG-LA 360 N+PR + E+ T + + E A G Sbjct: 2246 NVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERASDRGIPF 2305 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ GED++ + A+ Sbjct: 2306 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIAAEWRMME 2365 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2366 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINH 2420 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2421 FMKETVKNCRRDGFVQTILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQGS 2471 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + + G + + + + + Sbjct: 2472 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGVLQSDKTGLFPKRRLPGVFCP 2523 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 + G +L +HDE++ E + V + M Sbjct: 2524 V------------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMENAIK--L 2563 Query: 660 GLPLKAEGYEAKRY 673 + LK + + Sbjct: 2564 SVKLKVKVKIGASW 2577 >gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus] gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus norvegicus] Length = 2547 Score = 176 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 89/734 (12%), Positives = 179/734 (24%), Gaps = 143/734 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-------------------------DE 64 + A W + ++ S++ L D+ Sbjct: 1859 VVGLAVCWGGKDAYYLSL-QKEQKQSEMSPSLAPPPLDATLTVKERMEYLQSCLQKKSDQ 1917 Query: 65 TVMCVAHNSLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN-ACLAL 116 V ++ + + GI + + V S L + L Sbjct: 1918 ERSVV----TYDFIQTYKVLLLSCGISLEP-SYEDPKVACWLLDPDSKEPTLHSIVTSFL 1972 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 L + E I + V++ +F + + +E Sbjct: 1973 PHELALLEGIETGPGIQSLGLNVNTDHSGRYRAS--VESVLIFNSMNQLNSMLQKENLHD 2030 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E + G + ++ + ++ +L G S Sbjct: 2031 IF--CKVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLA-GHSFSFT 2087 Query: 237 QTYALRMYLFLITGIDL-------------VDMSE--------------GTLKSILSHSN 269 + LFL + T K IL+ Sbjct: 2088 SADDIAQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKDILNKLK 2147 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLS--EAVSSDGRL-RGTLQFYGASRTGRWSGCVFQ 326 LIL S + + L + ++ R+ R + TGR + Sbjct: 2148 DLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPVSQSHTATGRITFTEPN 2207 Query: 327 PQNLPRQ----------------ERSEEILTQTIQALNRGETIADPLG----------LA 360 QN+PR + L Q Sbjct: 2208 IQNVPRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKTSDRGVPF 2267 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ +G D++ + A+ Sbjct: 2268 SVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGADVFRSIAAEWKMIE 2327 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 D V R K + + Y GAK + +++ S ++ Sbjct: 2328 PDAVGDNLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYKGINH 2382 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + ++G R G+ + Sbjct: 2383 FMRDTVKNCRRDGFVETILGR---------RRYLPGIKDNNPYHKAHAERQAINTTVQGS 2433 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + + G + + G L + Sbjct: 2434 AADIVKVATVNIQKQLETFHPTF--------KSHGHRESMLQSDR--------AGLLPKR 2477 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 V +GM + G+ I L +HDE++ E + V + M Sbjct: 2478 KV---------KGMFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMECAIK--L 2525 Query: 660 GLPLKAEGYEAKRY 673 + LK + + Sbjct: 2526 SVKLKVKVKIGASW 2539 >gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura] gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura] Length = 2054 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 90/671 (13%), Positives = 186/671 (27%), Gaps = 120/671 (17%) Query: 18 KVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMPSDLL-----QYLRDETVMCVA 70 K ++ + + I ++ D V E +P+ L + + + + Sbjct: 1481 KQALFQVDDSSFIAGLSFCLADNVVYYMCMQEEEGQQVPTRLKVQELCKLMDRPELTLLV 1540 Query: 71 HNSLFERILFKK----TLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTK 124 H++ + I I R V S KN C Sbjct: 1541 HDAKEQLKALLHGVPQLHNIGI---RVEDPKVGNWLLEPEKTFSFKNMCQQFAPECTALA 1597 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 G G S ++A + R + E Sbjct: 1598 NLCGSGR-GYSSHGLDSSSAILPKLRASIEACVTVHILKGQIENLER---------IEVE 1647 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + ++ + G+ + +L + + K++ I K+ + T A+ Sbjct: 1648 MPIQIVLCRMECVGFPAKHQRMGRLIKHMLDTLNKVEIKIYKMHGSKF-NLGSTQAVANV 1706 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 L L T + +L +LILN + + + L R Sbjct: 1707 LGLHRK---PHGRVSTSRQVLEKLGSP--ISELILNHRKLNMQIVKGMQPLIR-CCKANR 1760 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + G + A TGR S QN+ + + ++ Sbjct: 1761 IHGHSITHTA--TGRISMSEPNLQNV----AKDFDIRMGPDSVRISC------------- 1801 Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 RS + + L+ AD +E R+LA ++ + + + +D++ A + P + Sbjct: 1802 RSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKALVSVMNSPQDLFTAIAAHWNHIPEAE 1861 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+++ R+ K + + Y G + L + + + + ++ Sbjct: 1862 VTEQMRSGTKQICYGIVYGMGMRSLGD-----ALQCTESEAQLICEQFHQSYPGIRAYTE 1916 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + + G L ++ + + V SA + Sbjct: 1917 KVLKFARKLGYVETITGRRRYLDHINSGEQN--------LIKQAERQAVNTTIQGSAADI 1968 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 A L M ++ L + EN +Q Sbjct: 1969 AKRAILDMDKNIGRYWKKLG---------------------------------VEENSIQ 1995 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662 +VL +HDE+V E P+ + L M +P Sbjct: 1996 --------------------LVLHIHDELVYEVPEAKAKRIAKFLGLTMESIGKGKLTVP 2035 Query: 663 LKAEGYEAKRY 673 LK + + + Sbjct: 2036 LKVKIKMGESW 2046 >gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 815 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 151/467 (32%), Gaps = 62/467 (13%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART 102 A+ + + + L + + H+ LG D + +L+ Sbjct: 384 APDPALVAAVREALGEGGLAKAVHDLKRTLKALAAPTEGDGLGPDAALDGVVDDVLLSAY 443 Query: 103 NGLP----SSLKNACLALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 P +SL+ A + + + +A G + A+ V+A Sbjct: 444 LIQPDRRDTSLEALAEAHLHTPLAAPREPAQQRAQGTFDLDGGQAAADRAARAADAVRAA 503 Query: 157 QLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 + + + +RL L + E L L + G +D+D + L+E Sbjct: 504 WVVRRLSTQFTPQVLDRGAQRL--LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTA 561 Query: 216 ERKKLDEDIVKLTDGI----IRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSI 264 E + L+ LF + ++ +L+ + Sbjct: 562 AADAAKESAWASVAEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDL 621 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + L ++L+ +R A+ + L E V+ D R+ T A TGR S Sbjct: 622 LEQTRHPFL-ENLMAHRDATKLRQT--VEGLLETVAPDDRIHTTYSQTAA-ATGRLSSLH 677 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN----GKKLVVAD 380 QN+P A +R +A L+ AD Sbjct: 678 PNLQNIP------------------------VRTEAGRRIREVFVADEVAGEQAVLLSAD 713 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ ++ I+AF GED++ ++ F D+V+ EQRA K M L Sbjct: 714 YSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLA 773 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 Y + L + F+ + + QD Sbjct: 774 YG-----LSSFGLSKQLKISVDEARGLMKGYFDRFGGVPEELIPYQD 815 >gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C] gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C] Length = 1023 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 103/842 (12%), Positives = 188/842 (22%), Gaps = 283/842 (33%) Query: 7 DIETRSPQ-PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM--PSDLLQY--- 60 D+ET S + L + + +W + A P +L + Sbjct: 227 DLETNSLRGDLLGAKP---------LVMSMSWLEGQGVTIPLEHHEAKWSPEELNEIYDL 277 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKN 111 L D V N F+ T G T + L + Sbjct: 278 FEKFLADRQQPKVGQNIQFDIRFLMNTKGFTEFEDN-RDTKIAYYLIVSQKVDTSKRLSD 336 Query: 112 ACLAL-----------NFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANH------ 152 L + + + KA I F + + + A Sbjct: 337 IAYELTDMGGYDEPLEQYKKQYKEDYIARKKAEIDAFKEAEKERVECEFKIAMDRYKQEV 396 Query: 153 -------------------------------------------VQAWQLFGEYCKRDVEA 169 ++ Y DV+ Sbjct: 397 KEAKLIGKPTKSIIKPVKEKVVVPKKSDIKLINEIDGGNFNYDWIPLEIMHPYASGDVDC 456 Query: 170 TRELFKRLIPLSDGERDLWLL-----------DQTINDRGYRIDLDLVLKLQELIAQERK 218 ++ L + + L I G +D + ++ + +E Sbjct: 457 CLRIYNVLYKRIEEHPKMLELWLGFYPRLTATLAHIEASGVLLDSEYAELVENIYTEEEH 516 Query: 219 KLDEDIVKLTDGI--------------------------------------------IRS 234 +L +I KL + Sbjct: 517 RLLNEIRKLPEVKEVEDEHMMFYKEGLKEMTKPVKDRDASVARLRDKYKITDSENKVHFK 576 Query: 235 SRQTYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSN 269 + LF + G+ L + L I + Sbjct: 577 PSSSEHKGRLLFKVMGLTLPYDKESIKKETFDNGVPEHQLTWRDYKTDKHALAYIAENYP 636 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + +L+L + L + + DG + G+ G T R S Q Sbjct: 637 EAKHVAELLLEYSKVNTLKNNFAQKLPKLASNKDGMIHGSYNSTGTEST-RLSANNPNMQ 695 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 L + ++ G ++ D + +E R Sbjct: 696 QL------------------SSKVGDPRRFDYKYPIKRLFRTRFEGGGMLQLDYSALEMR 737 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +L IA + +AF NGED++ T + + P D V K+ R K + + Sbjct: 738 ILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRAKSVNFGI-------- 789 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + A K + E + Sbjct: 790 ------------------------------------AYGESPFSIAPKLGVTVEEAERIF 813 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + A + Q ++ + RR+ R Sbjct: 814 EEYFASKPSIKQFIEETHQFAQRYGYVETLQGHRRLL---------------------RD 852 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNG 621 D K + K I+Q + M Sbjct: 853 SFSKDKKVFNGAMR--------------KSVNTIIQGTGAYLTNLSMVYIDEYIRKHNKR 898 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP------SWAKG---LPLKAEGYEAK 671 IV+TVHD +V + P + + +M P W P+ A+ + Sbjct: 899 SRIVITVHDSLVIDCPRDEVDEMAKVAKYIMENLPIDFLMIEWEGKEMRYPIVADVEIGE 958 Query: 672 RY 673 Y Sbjct: 959 NY 960 >gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] Length = 788 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 61/398 (15%), Positives = 106/398 (26%), Gaps = 82/398 (20%) Query: 287 SAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + DGR+ +L + TGR S Q ++ I + Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRSSFLNINQPAL 515 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +R IA GK L+VAD +E R+LA ++G ++AF Sbjct: 516 EKDRY-------------KIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEA 562 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D + T R + E+ L + G Sbjct: 563 GGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVPL 601 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + K+ + W V + D Sbjct: 602 LKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDT 661 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + + R D+ S L Sbjct: 662 IERARITKRVHTLL--------------------------GRSRHLPDINTSISVLRGH- 694 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 L R VQ + D+ M + G+ ++L VHDE++ E P Sbjct: 695 --LERAAI------NTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPS 746 Query: 639 TPYFSVGTL-CSLMTKNPSWA--KGLPLKAEGYEAKRY 673 + M+ + L + AK + Sbjct: 747 ESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 78/303 (25%), Gaps = 56/303 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQSA-MPSD 56 D E + + K +T + + ++W D + Sbjct: 29 ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN 111 Y + + + HN F++ + GI + T LAR L SL+ Sbjct: 85 FRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGF-YADTMHLARLWDSARGGLGYSLEA 142 Query: 112 ACLA--------LNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L + K + +G + P + Y Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202 Query: 163 CKRDVEATRELFKRLIPLSDGE---------------RDLWL-----LDQTINDRGYRID 202 D T L+ L +L+ + + G R+D Sbjct: 203 SAHDSVCTWHLWSSLKKKLQKASWYMEGDKRGNMYQFYELYWRHFGDVLVQMEAEGMRVD 262 Query: 203 LDLVLKLQELIAQERK----KLDEDIVKLTDGII-RSSRQTYALRMYLFLITGIDLVDMS 257 + +++++ +++ + + + + + +R LF G Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319 Query: 258 EGT 260 Sbjct: 320 PSV 322 >gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo abelii] Length = 2728 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 85/734 (11%), Positives = 181/734 (24%), Gaps = 140/734 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + ++ +P L L + M + Sbjct: 2037 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDQE 2096 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120 +++ + + GI + + + V S +L + L Sbjct: 2097 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 2155 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L ME + + + + + + + + + R Sbjct: 2156 LLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 2211 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + Q+ I Q + + E G S + Sbjct: 2212 -KVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHSFSFTSSDD 2270 Query: 241 LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 2271 IAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2330 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 2331 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFTEPNIQ 2388 Query: 329 NLPRQ----------------ERSEEILTQTIQALNRGETIADPLG------------LA 360 N+PR + +L +G ++ Sbjct: 2389 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEERAADRGMPF 2448 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2449 SISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2508 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2509 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2563 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2564 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTTVQGS 2614 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + + G + + + ++ Sbjct: 2615 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSQK--------R 2658 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK 659 +Q M + G+ I L +HDE++ E + V + M Sbjct: 2659 KLQG---------MFCPIRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMESAVK--L 2706 Query: 660 GLPLKAEGYEAKRY 673 + LK + + Sbjct: 2707 SVKLKVKVKIGASW 2720 >gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] Length = 788 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 61/398 (15%), Positives = 106/398 (26%), Gaps = 82/398 (20%) Query: 287 SAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + DGR+ +L + TGR S Q ++ I + Sbjct: 458 LISNFIQPLQNGQILGPDGRVHCSLNIN--TETGRLSARRPNLQASLQRSSFLNINQPAL 515 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +R IA GK L+VAD +E R+LA ++G ++AF Sbjct: 516 EKDRY-------------KIRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEA 562 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D + T R + E+ L + G Sbjct: 563 GGDFHSRTALNM--------YPHVRKAVETGEVLLEWS-------------GEGKSPVPL 601 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + + K+ + W V + D Sbjct: 602 LKDKFGSERRKAKMLNFSIAYGKTAMGLSKDWKVSLYEAQQTLDLWYNDRSEVKEWQTDT 661 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E + + R D+ S L Sbjct: 662 IERARITKRVHTLL--------------------------GRSRHLPDINTSISVLRGH- 694 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPD 638 L R VQ + D+ M + G+ ++L VHDE++ E P Sbjct: 695 --LERAAI------NTPVQGSAADVAMCAMLEIDRNSRLRELGWKLILQVHDEVILEGPS 746 Query: 639 TPYFSVGTL-CSLMTKNPSWA--KGLPLKAEGYEAKRY 673 + M+ + L + AK + Sbjct: 747 ESVEEAQEIVVKCMSFPFEGENFLKVNLDVDADHAKSW 784 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 35/303 (11%), Positives = 77/303 (25%), Gaps = 56/303 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQSA-MPSD 56 D E + + K +T + + ++W D + Sbjct: 29 ACDTE-VADIDVKKESP---VGHGKLTCFSIYCGVNVDFGGGKSRVWVDLLNGGPGILDV 84 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-----LPSSLKN 111 Y + + + HN F++ + GI + T LAR L SL+ Sbjct: 85 FRPYFENAEIKKIWHNYSFDKHILGNY-GIKAAGF-YADTMHLARLWDSARGGLGYSLEA 142 Query: 112 ACLA--------LNFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L + K + +G + P + Y Sbjct: 143 LTADPKVMDDRPLQNGKTSMKDLFAITNVKKDGSEGKLKVIPPVEELQTSKDTRDKWIYY 202 Query: 163 CKRDVEATRELFKRLIPLS-------------------DGERDLW-LLDQTINDRGYRID 202 D T L+ L + + + + G R+D Sbjct: 203 SAHDSVCTWHLWSSLKKKLLKASWYMEGDKRGNMYQFYELYWRHFGDVLVRMEAEGMRVD 262 Query: 203 LDLVLKLQELIAQERK----KLDEDIVKLTDGII-RSSRQTYALRMYLFLITGIDLVDMS 257 + +++++ +++ + + + + + +R LF G Sbjct: 263 TVHLAEVEKVALNQKQLSVSRFQKWASQYCPDAMYMNVCSDVQIRQILF---GGTSNKKD 319 Query: 258 EGT 260 Sbjct: 320 PSV 322 >gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens] Length = 1154 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 87/753 (11%), Positives = 187/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 448 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 507 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 508 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 566 Query: 108 ---SLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + + + L ME + + + + + + + Sbjct: 567 QEPTLHSIVTSFFPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 626 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 627 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 681 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 682 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 740 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 741 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 800 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 801 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 858 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 859 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 918 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 919 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 973 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 974 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 1024 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 1025 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 1076 Query: 583 AT-SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + + L R+R G + G +L +HDE++ E + Sbjct: 1077 SDQTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVAEEDV 1117 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 1118 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 1148 >gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera] Length = 1118 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 101/383 (26%), Gaps = 88/383 (22%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 +GR+ +L + TGR S QN P E+ Sbjct: 811 GKNGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 847 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA+ G L+VAD +E R+LA +A + AF G D + T + Sbjct: 848 ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPH 904 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V K + G D + + + Sbjct: 905 IREAVEKREV------------------LLEWHPQPGEDKPPVPLLKDAFGSERRKAKML 946 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + A K+ + W + + VL + + + + Sbjct: 947 NFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLL- 1005 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R + V + R Sbjct: 1006 -------------------------GRARSFPSVHHATASQRGHI---ERAAI------N 1031 Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 VQ + D+ M + G+ ++L VHDE++ E P + M Sbjct: 1032 TPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECME 1091 Query: 653 KNPSW--AKGLPLKAEGYEAKRY 673 K + L + A+ + Sbjct: 1092 KPFDGKNILSVDLAVDAKCAQNW 1114 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 66/302 (21%) Query: 2 SKL--FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS- 51 L D E V + I + + + +W D + Sbjct: 355 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 410 Query: 52 -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP--- 106 + + + D ++ V HN F+ + + D+ + T +AR Sbjct: 411 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 467 Query: 107 ---SSLKNA--------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 SL+ L + K GK + + Sbjct: 468 VGGYSLEALTRDSKVMSGAHMSNGEEL-IGKVSMKTIFGKKKLKKDGTEGKI-ITIAPVE 525 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLI-PLSDGERDLW-------------------L 189 + + + Y D +T +L++ + L D E L Sbjct: 526 VLQREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGE 585 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMY 244 L + G +D + K++++ E + D + LR Sbjct: 586 LLVQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQL 645 Query: 245 LF 246 LF Sbjct: 646 LF 647 >gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1683 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 94/730 (12%), Positives = 187/730 (25%), Gaps = 172/730 (23%) Query: 28 AVITLCAYAWDDEPVKLWDR---------------TEQSAMPSDLL-------------- 58 + A W D PV + + + ++ Sbjct: 1033 FEVMGVAICWKDSPVYYVNLSIVHKSFQHATNPNCGNKEVIIREVNSSLIESQTRWRHVG 1092 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR-------------------------- 92 L V ++ + + + G+ +PS R Sbjct: 1093 TMLSKTGVRKISWDLKIQLQVL-NNPGLHVPSARQTTEHERGVPDVKAREGEVVALPSIR 1151 Query: 93 ----WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK-ALIARFCKGSIDSPPYDC 147 I T V A + + L+ + + K G+ A A + Sbjct: 1152 VQMPCIDTRVAAWLLWPD---EESTRLLSLEQEVKKRLPGEIAAAAGRAGRWANQMGCVA 1208 Query: 148 TRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + Q++ +C + L + L E L + + +D+ + Sbjct: 1209 HNGCCRRVAQIWVLHCAFWKLLVAEGLHEAL---LQLEMPLVRVLADMETWSLGLDMRVC 1265 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTL 261 K Q + + ++L+ + G+ S + L+ + + T Sbjct: 1266 RKAQSHLHCKLRELEAQ-GEKLAGMSFSLSAPAEVAHVLYRHLKLPVPPGCKGKHHPSTD 1324 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKL----------NTLSEAVSSDGR-----LR 306 K L D+I + S L L + R + Sbjct: 1325 KQALEFLRNHHPIADIIKEHRSLSKLLQSTLGSIIAWAKSPEPLFSSQERSSRGEIFSIA 1384 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G ++ TGR S Q + + + E + + + + R Sbjct: 1385 GHWLQT-STATGRLSMEDPNLQCV--EHAVSFTIEGGRSLDGDQEKANNVVEVNA---RQ 1438 Query: 367 CIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKV 424 + S G L+ AD + IE R++A +G+ + ++ D++ A+ P+ +V Sbjct: 1439 AFVPSQEGWILLSADYSQIELRLMAHFSGDPSLVSLLSHPTGDLFRVLAAQWTGLPMCEV 1498 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 S +QR K + + Y G L+ V + + Sbjct: 1499 SDKQRERTKRLVYGILYGMGVNTLAE-----HLECPVAEAQVMLERFKGTFPLVTTWLSH 1553 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 D + L G L K W + + V SA + Sbjct: 1554 AVDSCRQKGYITTLSGRKRYLDKIN--------TGKWGEQAKAERQAVNSICQGSAADLI 1605 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 +L V S + Q Sbjct: 1606 ----------------------KLAMIKVHDAISSSH---------------------QG 1622 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPL 663 ++L +HDE++ E V + M + +PL Sbjct: 1623 S----------------CRLLLQIHDELLLEVDKRVLKHVAQILRSSMEGAIT--LRVPL 1664 Query: 664 KAEGYEAKRY 673 + + + Sbjct: 1665 RTKLQVGTSW 1674 >gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor] gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor] Length = 917 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 100/704 (14%), Positives = 190/704 (26%), Gaps = 130/704 (18%) Query: 28 AVITLCAYAWDDEPVKLWDR----------------TEQSAMPSDLLQYLRDETVMCVAH 71 + A W++ P+ + + ++ ++V + Sbjct: 275 FEVFGLAVCWENSPIYYCNFPKDLVTTSNNDFREMWGNFQRRWEKITDIMQQKSVQKMTW 334 Query: 72 NSLFERILFK-----------KTLGIDI-PSKRWICTSVLARTNGLPSS----LK--NAC 113 N + K L + + + P S L Sbjct: 335 NLKIQIQALKSPYISCQRLERFHLDHKMLDKVEVLD---NSYVLLSPVSVYNGLDICLLA 391 Query: 114 LALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L E + K + R + + D N + C R TR Sbjct: 392 WVLWPDEESRTVPNLEKFVKRRLHSEAAAAANRDGRWRNQMHKAAH--NGCCRRSAQTRA 449 Query: 173 LFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L+ L L E L + + G D+D L + +I ++ K+L+++ Sbjct: 450 LYTVLKKLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHIITKKLKELEKE 509 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDL 277 G S T + L++ + + T K L H + Sbjct: 510 AY-RLAGKNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDHLRDQHPIIPV 568 Query: 278 ILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 I + L ++ S + G ++ TGR S Q Sbjct: 569 IKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQT-STATGRLSMEEPNLQ---- 623 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391 E L + + + VR I V AD + IE R++A Sbjct: 624 ---CVEHLVEFDTGKSNKDYCMSVDDHHKINVRDFFIPTKENWLFVTADYSQIELRLMAH 680 Query: 392 IAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 + + ++ + + D++ ++ + +S ++R K + + Y GA Sbjct: 681 FSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANSLAE 740 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 L+ K S + S + + + L+G L K Sbjct: 741 -----QLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGRRRFLTKITA 795 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 K+ + V SA + V + Sbjct: 796 GNS--------KEKAKAQRQAVNSICQGSAADIIKVAMI-------------------RL 828 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 V + + +T ++ R+ + G I+Q VHD Sbjct: 829 HSVITNRTRATDSTDEVTRKFSEFGGQCHLILQ------------------------VHD 864 Query: 631 EIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 E+V E G L M + S +PL+ + K + Sbjct: 865 ELVLEVVPCMVAQAGRLLQICMEEAASLL--VPLRTKIKVGKTW 906 >gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus] Length = 530 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 69/501 (13%), Positives = 137/501 (27%), Gaps = 61/501 (12%) Query: 54 PSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS-----VLARTNGLPS 107 L Q LR + V + N+ F + + + G I K+ + + A Sbjct: 31 LQVLFQILRCK-VPVICFNAKDFLKTVL-QVYGSGISWKQVADSIVLDPRIAAWLINSS- 87 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY---CK 164 + + + + L Y Sbjct: 88 --DTV--------PSFECLLQYFEKSYSVETVNTDTGGLRNSRHQNLVVNLQKLYTIMMG 137 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + +L E L + + +D + K E++ K+L+E+ Sbjct: 138 LAHDLQVQGLWKLFCTL--ELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEA 195 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGI-----DLVDMS----EGTLKSILSHSNITQLAK 275 ++ G + LR LF + + T + +LS Sbjct: 196 HQIA-GERFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLP 254 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L ++ L + G + T G + TGR S Q + + Sbjct: 255 KLMLEYRQVRKMKSTYVDGLRTCMRK-GFICPTWNQTG-TVTGRLSSKHPNIQGISKHPV 312 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 TI+ R+ ++ G + AD + IE R+LA ++ E Sbjct: 313 RITKKQYIKGKEEEILTISP---------RALFVSKKGYTFLAADFSQIELRILADLSAE 363 Query: 396 DWKIKAFANGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +K F E + T ++ P ++V + R K + ++ Y G + Sbjct: 364 PELLKLFQEPETTDIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAEC-- 421 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + S + +++ Q ++G L Sbjct: 422 ---LGITPHEAGHFIESFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGRKRLLA------- 471 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 + L Sbjct: 472 --NINSQDYKLRTQAERQAVN 490 >gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes] Length = 2499 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + ++ +P L L + M + Sbjct: 1809 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1868 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120 +++ + + GI + + + V S +L + L Sbjct: 1869 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 1927 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L ME + + + + + + + + + R Sbjct: 1928 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 1983 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 1984 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2041 Query: 241 LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 2042 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2101 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 2102 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2159 Query: 329 NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360 N+PR + +L +G E AD Sbjct: 2160 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2219 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2220 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2279 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2280 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2334 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2335 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2385 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599 V + + + G + + L R+R G Sbjct: 2386 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2436 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658 + G +L +HDE++ E + V + M Sbjct: 2437 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2476 Query: 659 KGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2477 LSVKLKVKVKIGASW 2491 >gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes] Length = 2500 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + ++ +P L L + M + Sbjct: 1810 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1869 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120 +++ + + GI + + + V S +L + L Sbjct: 1870 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 1928 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L ME + + + + + + + + + R Sbjct: 1929 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 1984 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 1985 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2042 Query: 241 LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 2043 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2102 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 2103 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2160 Query: 329 NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360 N+PR + +L +G E AD Sbjct: 2161 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2220 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2221 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2280 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2281 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2335 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2336 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2386 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599 V + + + G + + L R+R G Sbjct: 2387 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2437 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658 + G +L +HDE++ E + V + M Sbjct: 2438 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2477 Query: 659 KGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2478 LSVKLKVKVKIGASW 2492 >gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes] Length = 1762 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + ++ +P L L + M + Sbjct: 1072 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1131 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120 +++ + + GI + + + V S +L + L Sbjct: 1132 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 1190 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L ME + + + + + + + + + R Sbjct: 1191 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 1246 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 1247 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 1304 Query: 241 LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 1305 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 1364 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 1365 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 1422 Query: 329 NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360 N+PR + +L +G E AD Sbjct: 1423 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 1482 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 1483 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 1542 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 1543 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 1597 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 1598 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 1648 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599 V + + + G + + L R+R G Sbjct: 1649 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 1699 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658 + G +L +HDE++ E + V + M Sbjct: 1700 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 1739 Query: 659 KGLPLKAEGYEAKRY 673 + LK + + Sbjct: 1740 LSVKLKVKVKIGASW 1754 >gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes] Length = 2596 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + ++ +P L L + M + Sbjct: 1906 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 1965 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120 +++ + + GI + + + V S +L + L Sbjct: 1966 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 2024 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L ME + + + + + + + + + R Sbjct: 2025 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 2080 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 2081 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2138 Query: 241 LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 2139 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2198 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 2199 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2256 Query: 329 NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360 N+PR + +L +G E AD Sbjct: 2257 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2316 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2317 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2376 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2377 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2431 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2432 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2482 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599 V + + + G + + L R+R G Sbjct: 2483 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2533 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658 + G +L +HDE++ E + V + M Sbjct: 2534 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2573 Query: 659 KGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2574 LSVKLKVKVKIGASW 2588 >gi|114588752|ref|XP_001165150.1| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes] Length = 2730 Score = 174 bits (442), Expect = 3e-41, Method: Composition-based stats. Identities = 86/735 (11%), Positives = 180/735 (24%), Gaps = 143/735 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHN--------- 72 + A W + ++ +P L L + M + Sbjct: 2040 VVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKE 2099 Query: 73 ---SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKN-ACLALNFS-E 120 +++ + + GI + + + V S +L + L Sbjct: 2100 CSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELP 2158 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L ME + + + + + + + + + R Sbjct: 2159 LLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKENLQDVFR---- 2214 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + G + ++ + ++ +L G S + Sbjct: 2215 -KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLA-GHSFSFTSSDD 2272 Query: 241 LRMYLFLITGIDL---------VDM------------------SEGTLKSILSHSNITQL 273 + LFL + T K +L+ Sbjct: 2273 IAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHP 2332 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQPQ 328 LIL + + + L + R+ Q + A TGR + Q Sbjct: 2333 LPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIYPVSQSHTA--TGRITFIEPNIQ 2390 Query: 329 NLPRQ----------------ERSEEILTQTIQALNRG------------ETIADPLGLA 360 N+PR + +L +G E AD Sbjct: 2391 NVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPF 2450 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 2451 SISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE 2510 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V + R K + + Y GAK + +++ S + Sbjct: 2511 PESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKENDAACYIDSFKSRYTGINQ 2565 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++G R G+ + Sbjct: 2566 FMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNPYRKAHAERQAINTIVQGS 2616 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS-QLMRERTYGGKLTE 599 V + + + G + + L R+R G Sbjct: 2617 AADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQSDRTGLSRKRKLQGMFC- 2667 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWA 658 + G +L +HDE++ E + V + M Sbjct: 2668 -PI-----------------RGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMESAVK-- 2707 Query: 659 KGLPLKAEGYEAKRY 673 + LK + + Sbjct: 2708 LSVKLKVKVKIGASW 2722 >gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1] gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1] Length = 608 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 103/699 (14%), Positives = 190/699 (27%), Gaps = 175/699 (25%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + L +D ET + Y I L + + + + Sbjct: 35 LRILGLDTETTD--------LGIYKPDFGIRLIQFG-NPWESWVLPVERGGVFVGAAVTA 85 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGL--------PSSLK 110 L+ + HN+ F+ + ++TLG+ + + T + + L+ Sbjct: 86 LQKVQRFVI-HNAAFDLQVIERTLGVPMEQMWPKVEDTKIYSHLVDPRAYKEGGTGHKLE 144 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + KA +AR K + + + Y D Sbjct: 145 ELTKFY-IDPVTAEEV--KASMARLAKKHKTTKDKIWALVDLDDPD--YELYAGMDTILV 199 Query: 171 RELFKRLIPL--------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + G+ +D+D KL + ++ + Sbjct: 200 SRLLGKVAPLVPEPSHKLIPYEHKLAEVMSYVERTGFLLDVDYSEKLSADMLRKSEHYTA 259 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI------LSHSNITQLAKD 276 + T L L TG+ + + + + LAK Sbjct: 260 VARYAYGVDSVN--STEKLADGL-ERTGVKIKGRTATGKRQVNAELLEALAEEGNALAKA 316 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I + E ++ R+ + A RT R S QNLP + Sbjct: 317 AIEA-KKWGSWEKTWVRNFIERRDANDRVHPGINPLQA-RTARMSTNNPSAQNLPAGDW- 373 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR C +A G+ +V D E RVLA +A + Sbjct: 374 --------------------------MVRRCFLADPGQLMVSVDYQAQELRVLAALANDR 407 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 I+AF + D++ T S R +GK++ A + G A Sbjct: 408 TMIQAFKDNADLHQITADA---------SGVDRKVGKMVNFAYVFGSGPSTIAAQA---- 454 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + V + + Sbjct: 455 ----------------------------------------GITFPEAKRVIAGFEQSYPE 474 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V L K L A + ++ P+ RRL + Sbjct: 475 VTALSKSLQREAANLGY--------------------------VITPTGRRLPVDPDR-- 506 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV--LTVHDEIVS 634 G +VQ+ SRD+ + + G + L +HDE+++ Sbjct: 507 -----------------GYAALNYMVQSTSRDVTASAVLRLHEAGMTPMIRLVIHDEVLA 549 Query: 635 ETP-DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 P + + +M + G+ + + R Sbjct: 550 SVPEAEAEATAKEIGRIMEQTFR---GVLINTDPEVGGR 585 >gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 84/783 (10%), Positives = 185/783 (23%), Gaps = 136/783 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E + + + + I + + D +W D + + Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGEIICFSIYSGPEADFGDGKSCIWVDVLDGDGKNLLV 443 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + +D ++ V HN F+ + + + T +AR S Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500 Query: 109 LKNA--------------CLALNFSE-----HLTKMEEGKALIARFCKGSIDSPP----- 144 L+ L E K G+ + + + Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560 Query: 145 ------YDCTRANHVQAWQLFGEYCKRDVEATRELFK-------RLIPLSDGERDLW-LL 190 + + + Y + + ++ + + + L Sbjct: 561 LQKTERELWICYSALDSISTLMLYESLKNKLAKRIWTFDGVRKGSMYEFYEKYWRPFGEL 620 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYL 245 + G +D + +++++ E++ D + LR Sbjct: 621 LVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCHDAKYMNVGSDTQLRQLF 680 Query: 246 F----------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA------------ 283 F + K + + L+R+ Sbjct: 681 FGGIQNRKNSDESLPYEKEFKVPNIDKVTEEGKKAPTKFRKIRLHRICDLIDTEMYTASG 740 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYG-----ASRTGRWSGCVFQPQNLPRQERSEE 338 + L LS VS+D + S + P P Sbjct: 741 WPSVSGDALKALSGKVSADFDILDEADDNAEEDPETSIDEALATNNEVPSQEPEVSIYGS 800 Query: 339 ILTQTIQALNRGETIADP-----LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI- 392 E + + + I+ G+ D++G R+ + Sbjct: 801 AYNAFGGGQKGIEACHAIAALCEMCSIGSLISNFILPLQGQ-----DVSGENGRIHCSLN 855 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA------LGYQGGAK 446 + + K Q V + L + K Sbjct: 856 INTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVADYGQLELRILAHLANCK 915 Query: 447 VFKTMASHCGLDLQQFSQNVK--STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 G + + N+ E+ H ++ P + G+ Sbjct: 916 SMLDAFKAGGDFHSRTAMNMYTHIREAVENGRVLLEWHPQPGEEKPPVPLLKDAFGSERR 975 Query: 505 L-----VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 A+ G+ + WK + V + Sbjct: 976 KAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYRDRKEVSDWQEQRKFEAR-EFRR 1034 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK---- 615 + R + VK + + + R VQ + D+ M Sbjct: 1035 VHTLLGRARWFPSVK---NATGSVKGHIERAAI------NTPVQGSAADVAMCAMLEISK 1085 Query: 616 --NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNP--SWAKGLPLKAEGYEA 670 + G+ ++L VHDE++ E P+ ++ + M+K + L + A Sbjct: 1086 NARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVDSKCA 1145 Query: 671 KRY 673 K + Sbjct: 1146 KNW 1148 >gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 240 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 116/285 (40%), Gaps = 57/285 (20%) Query: 402 FANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F NGED+Y T + F P++K + E R GK+ LA GY G K M Sbjct: 1 FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------- 53 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+K L + + AWRA + ++Q Sbjct: 54 ---------------------------------ALKMGLSKDELQPIVDAWRAANPNIVQ 80 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 LW D+ + G ++ R L + + I LPS RRL Y + Sbjct: 81 LWHDVDNAATRAISTGSPVTLR------NLGFEKKSGMLFINLPSGRRLAYVKPGIGMNR 134 Query: 580 LNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + + TYGGKL ENIVQA +RD+L E + G IV+ +HD Sbjct: 135 FGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIHD 194 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V + P +V +C+L+ + P GLP+ A GYE Y+K Sbjct: 195 EVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239 >gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia guttata] Length = 631 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 66/493 (13%), Positives = 132/493 (26%), Gaps = 65/493 (13%) Query: 65 TVMCVAHNSLFE-RILFKKTLGIDIPSKRWI-----CTSVLARTNGLPSSLKNACLALNF 118 V + N+ + + G +I K+ + A Sbjct: 134 KVPIICFNAK-DFLRTLLQIYGNEISWKQVANSVVLDPRIAAWLINPS---DTV------ 183 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + K F K T ++Q G ++ +L L Sbjct: 184 --PSFECLIQK----YFEKPFSKGAENTDTDTLRNISYQNLGVNLEKLYNVMMDLAHGLK 237 Query: 179 P------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + +D + K E++ K+L+ + + G Sbjct: 238 AQGLWNLFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHE-VAGER 296 Query: 233 RSSRQTYALRMYLFLITGID--LVDMSE-------GTLKSILSHSNITQLAKDLILNRLA 283 + LR LF + + T + +L+ +IL Sbjct: 297 FLLTSSCQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDLHPLPKIILEYRQ 356 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ L G + T G + TGR S Q + + + Sbjct: 357 VHKMKSTYVDGL-RTCMKKGFISSTWNQTG-TVTGRLSAKHPNIQGISKHPVTIAKKQYI 414 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 TI+ R+ ++ G + AD + IE R+LA ++ E +K F Sbjct: 415 KGKEEDIITISP---------RTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQ 465 Query: 404 NGEDIYVTTY--AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 E + ++ P ++V R K + ++ Y G + L + Sbjct: 466 EPEITDIFATLASQWKGIPSEQVKHADREQAKRIVYSVVYGAGKERLADC-----LGITP 520 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + S + +++ +Q ++G L + Sbjct: 521 VQASQFIESFMQKYKKVHEFTKKTIEQCRNKGYVVSIMGRKRPLA---------NINAQD 571 Query: 522 KDLTEGFACVVQE 534 L Sbjct: 572 YKLRTQAERQAVN 584 >gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi] gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi] Length = 2235 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 152/502 (30%), Gaps = 98/502 (19%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E + + + G+ + L + + KKL+ I +L G + Sbjct: 1821 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELH-GSRFN 1879 Query: 235 SRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 T A+ L G+ T + IL + LILN S + Sbjct: 1880 LGSTQAVAKVL----GLHRKANGRISTSRQILEKLDSPM--SQLILNYRKLSMLLSKNMQ 1933 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + R+ G Y A TGR S QN+ + + + +N Sbjct: 1934 PLLK-CCQANRVHGQSITYTA--TGRISMSEPNLQNV----AKDFEIQLGAEKINISC-- 1984 Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 RS +GK+ L+ AD +E R+LA ++ + +K + +D++ Sbjct: 1985 -----------RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAI 2033 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A P +VS++ R K + + Y G + L + + S Sbjct: 2034 AAHWNKIPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFH 2088 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + +++ + + + + G L + + + Sbjct: 2089 LAYAGIKAYAMKVVKFARNNGYVETITGRRRYLDHINSGE--PQIKN------QAERQAI 2140 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 SA +A L M ++ L Sbjct: 2141 NSTIQGSAADIAKSAILRMEKNIGRYREKLG----------------------------- 2171 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651 L EN V ++VL +HDE++ E P V + SL M Sbjct: 2172 ----LAENAV--------------------NLVLHLHDELIFEVPVDKAKKVAKVLSLTM 2207 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 +PL+ + + + Sbjct: 2208 ENCVK--LSVPLRVKLKIGRSW 2227 >gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi] gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi] Length = 2218 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 152/502 (30%), Gaps = 98/502 (19%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E + + + G+ + L + + KKL+ I +L G + Sbjct: 1804 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELH-GSRFN 1862 Query: 235 SRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 T A+ L G+ T + IL + LILN S + Sbjct: 1863 LGSTQAVAKVL----GLHRKANGRISTSRQILEKLDSPM--SQLILNYRKLSMLLSKNMQ 1916 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + R+ G Y A TGR S QN+ + + + +N Sbjct: 1917 PLLK-CCQANRVHGQSITYTA--TGRISMSEPNLQNV----AKDFEIQLGAEKINISC-- 1967 Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 RS +GK+ L+ AD +E R+LA ++ + +K + +D++ Sbjct: 1968 -----------RSAFAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAI 2016 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 A P +VS++ R K + + Y G + L + + S Sbjct: 2017 AAHWNKIPESEVSEQLRNGTKQICYGIVYGMGMRSLAE-----SLKCTEQEAQMISEQFH 2071 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + +++ + + + + G L + + + Sbjct: 2072 LAYAGIKAYAMKVVKFARNNGYVETITGRRRYLDHINSGE--PQIKN------QAERQAI 2123 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 SA +A L M ++ L Sbjct: 2124 NSTIQGSAADIAKSAILRMEKNIGRYREKLG----------------------------- 2154 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-M 651 L EN V ++VL +HDE++ E P V + SL M Sbjct: 2155 ----LAENAV--------------------NLVLHLHDELIFEVPVDKAKKVAKVLSLTM 2190 Query: 652 TKNPSWAKGLPLKAEGYEAKRY 673 +PL+ + + + Sbjct: 2191 ENCVK--LSVPLRVKLKIGRSW 2210 >gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis domestica] Length = 816 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 61/486 (12%), Positives = 139/486 (28%), Gaps = 53/486 (10%) Query: 67 MCVAHNSL-FERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + N+ F + + + + + + A + Sbjct: 318 TVICFNAKEFVKTVLQVYGSYCHWKHVVDFVVLDPRIAAWLLDPS---DTISSFEDLVRK 374 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + + S + + + + K V +LF L Sbjct: 375 YFEESVTMKVNNTNGGSSHNMMFSNQRKNLRILYRITVDLCSKLKVCGLWQLFYTL---- 430 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E L + + +++D + + + +L+ K+L+++ + G L Sbjct: 431 --ELPLIPILAVMETHKFQVDKEEMKRTSKLLGCRLKELEQEAH-VAAGEQFLVTSNNQL 487 Query: 242 RMYLFLITGI-------DLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 R LF + L T +++L+ +IL Sbjct: 488 REVLFDKLKLHLLCKSKTLPKTELQKHPSTSEAVLNALQDLHPLPKIILEYRQIHKVKST 547 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L + G + T G + +GR S Q + + + Sbjct: 548 FVDGLLSCMRK-GFIAPTWNQTG-TVSGRLSAKKPNIQGISKHPIQITKHQYEQGKEDEK 605 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 T++ R+ I+S G + AD + IE R+LA ++ + +K F E + V Sbjct: 606 TTVSP---------RTMFISSKGYTFLAADFSQIELRILAHLSCDPELLKLFQEPESLDV 656 Query: 411 TT--YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ P+++V+ +R K + ++ Y G + L + + Sbjct: 657 FMSLTSQWKGIPLEQVTHVEREQTKRIVYSVVYGAGKERLAAC-----LGVTSLQSSQFI 711 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 S + +++ Q ++G L + L Sbjct: 712 ESFLQKYKKIHDFTQETIMQCHHKGYVTSIMGRRRPL---------PNINAKDYRLRTQA 762 Query: 529 ACVVQE 534 Sbjct: 763 ERQAVN 768 >gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi] gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi] Length = 475 Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats. Identities = 76/504 (15%), Positives = 137/504 (27%), Gaps = 115/504 (22%) Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E +L I G D + L L + Q+ +++ ++ + Sbjct: 69 KSVELELKSVVLFSEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIPF-NFGSA 127 Query: 239 YALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + LF+ I + S T K +L LIL + + L Sbjct: 128 AEISQILFVRLQIPPPNASTGRHYSTNKIVLQQLAPKYPIISLILEWRRINTALTTSLPI 187 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + SDGR+R F TGR QN+ + + Sbjct: 188 LLKLCCSDGRIR--ANFITHCCTGRVLTVHPNVQNVQKDAIID----------------- 228 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS I G+ L+ +D +E R+LA ++ + I F +D + Sbjct: 229 ------GFSIRSLFIVPKGRILLSSDYRQLEMRMLAHLSADPNLISLFLTKDDFFEIITN 282 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 K N K R K + + Y G Sbjct: 283 KW-NKNETLHIKVDRNKVKQLCYGIIYGMG------------------------------ 311 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + + + + ++ V + Sbjct: 312 --------------AISLSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRTNG-- 355 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 + RR + L T +Q R+ Sbjct: 356 ------------------------FVSTLLGRRRFLPQITSAV--LQTELAQAERQAI-- 387 Query: 595 GKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS-VGTLCS 649 +Q ++ + N KN IV+ +HDE++ ET ++ S V + Sbjct: 388 ----NTCIQGSVAELFKMALLNLRKNLLGTNSSIVMQLHDEVLIETDESSIASIVEIIKH 443 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 MT +PL + K + Sbjct: 444 SMTSVTP-NLRVPLAVKISFGKSW 466 >gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa] Length = 1413 Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats. Identities = 66/484 (13%), Positives = 128/484 (26%), Gaps = 117/484 (24%) Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI-------DLVDMS----EGTLKSI 264 K+L+++ G LR LF + L M T ++ Sbjct: 959 RLKELEQEAH-FVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTV 1017 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 LS +IL ++ L + G + G + TGR S Sbjct: 1018 LSALQDLHPLPRIILEYRQVHKIKSTFVDGLRAHM-KKGSVSSVWNQTG-TVTGRLSAKR 1075 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 Q + + T++ RS ++ G+ + AD + I Sbjct: 1076 PNMQGISKLPIQIGAPRNAKGEAGDALTVSA---------RSLFVSPEGRSFLAADFSQI 1126 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTT--YAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 E R+LA ++G+ +K F E V + ++ + V++ R K + A+ Y Sbjct: 1127 ELRILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYG 1186 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 A + Sbjct: 1187 --------------------------------------------AGRERLAACLGVTLRE 1202 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 +++ K++ + + + R + ++ Sbjct: 1203 AARFGESFLQKYKKIKDFTQA--------------------------TIARCHQTGYVES 1236 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 RR ++ L +Q R+ +VQ + D+ M Sbjct: 1237 VMGRRRPLPRIRARDQKLR---AQAERQA------VNFVVQGSAADLCKMAMIRIFAAVA 1287 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKAEGYE 669 +V +HDE++ E D+ L M +PLK Sbjct: 1288 TSPTLTARLVAQIHDELLFEVEDSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSLST 1347 Query: 670 AKRY 673 + + Sbjct: 1348 GRSW 1351 >gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1034 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 101/383 (26%), Gaps = 88/383 (22%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 +GR+ +L + TGR S QN P E+ Sbjct: 727 GKNGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 763 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA+ G L+VAD +E R+LA +A + AF G D + T + Sbjct: 764 ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPH 820 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V K + G D + + + Sbjct: 821 IREAVEKREV------------------LLEWHPQPGEDKPPVPLLKDAFGSERRKAKML 862 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + A K+ + W + + VL + + + + Sbjct: 863 NFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVLAWQEKRKKEATTLKYVCTLL- 921 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R + V + R Sbjct: 922 -------------------------GRARSFPSVHHATASQRGHI---ERAAI------N 947 Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 VQ + D+ M + G+ ++L VHDE++ E P + M Sbjct: 948 TPVQGSAADVAMCAMLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECME 1007 Query: 653 KNPSW--AKGLPLKAEGYEAKRY 673 K + L + A+ + Sbjct: 1008 KPFDGKNILSVDLAVDAKCAQNW 1030 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 66/302 (21%) Query: 2 SKL--FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS- 51 L D E V + I + + + +W D + Sbjct: 271 KHLIHACDTE----VANIDVKRETPVDHGEIICFSIYSGPEADFGNGKSCIWVDVLDGGG 326 Query: 52 -AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP--- 106 + + + D ++ V HN F+ + + D+ + T +AR Sbjct: 327 RDLLVEFAPFFEDPSIQKVWHNYSFDNHVIENY---DLKVSGFHADTMHMARLWDSSRRA 383 Query: 107 ---SSLKNA--------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 SL+ L + K GK + + Sbjct: 384 VGGYSLEALTRDSKVMSGAHMSNGEEL-IGKVSMKTIFGKKKLKKDGTEGKI-ITIAPVE 441 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLI-PLSDGERDLW-------------------L 189 + + + Y D +T +L++ + L D E L Sbjct: 442 VLQREDRKPWISYSALDSMSTLKLYESMKNKLLDKEWLLDGARKGCMFDFYQKYWRPFGE 501 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMY 244 L + G +D + K++++ E + D + LR Sbjct: 502 LLVQMETEGMLVDRAYLSKVEKVAKAEEQVAANRFRNWASKHCPDAKYMNVGSDTQLRQL 561 Query: 245 LF 246 LF Sbjct: 562 LF 563 >gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis] Length = 241 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 83/276 (30%), Gaps = 42/276 (15%) Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 T +L + ILN + + L + + G++ Q ++TG Sbjct: 1 TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQT-LTQTG 59 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +R + G KL Sbjct: 60 RLSSVDPNLQNIP------------------------IRMEEGRKIRQAFVPQQEGWKLF 95 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVME 436 +D + IE RVLA I+G++ +AF G+DI+ +T F + V+ R K + Sbjct: 96 ASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVN 155 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L++ + + F+ + + + + E + Sbjct: 156 FGVVYG-----ISDYGLSQNLNITRKAAQEFIDRYFDKYPGVKQFMEDIVKEAKENGYVE 210 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 L R + +L Sbjct: 211 TLFHR---------RRYLPDIHNRNFNLRSFAERTA 237 >gi|218200555|gb|EEC82982.1| hypothetical protein OsI_28013 [Oryza sativa Indica Group] Length = 1028 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 85/802 (10%), Positives = 174/802 (21%), Gaps = 184/802 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 274 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 329 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 330 LMEFAPFFEDPSIKKVWHNYSFDNHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 386 Query: 107 SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ + K G+ + + + + + Sbjct: 387 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKKVRKNGSEGK-TISIEPVEKLQRED 445 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195 +L+ Y D +T +L++ L + E + W L + Sbjct: 446 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKME 505 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246 G +D + ++++ ERK + K D + +R F Sbjct: 506 TEGMLVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIK 565 Query: 247 --LITGIDLV------------------DMSEG------TLKSILSHSNITQLAKDLILN 280 G S+ T+ L Sbjct: 566 NRNKPGETWPQSKTFKVPNDESIATEGKKTSKSRTIKLFTIVEDLKLFTTEGKKTTKTGW 625 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 L +L+ + +D G S Q++ Sbjct: 626 ----LKVRGDVLWSLAGKIPTD---HIYKIDDGQEFDEDGSSVELPEQDIENTSPYGTAY 678 Query: 341 TQTIQALNRGETIADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--- 392 E + II G + + I + Sbjct: 679 EAFGGGKKGREACHAIAALCEAFSIDKLISGFIIPLQGDR-ISCKEGRIHCSLNINTETG 737 Query: 393 ---AGEDWKIKAFANGEDIYVTTYAKA-----FNTPIDKVSKEQRAIGKVMEL-----AL 439 A A +D Y A D E R + + A Sbjct: 738 RLSARTPNLQNQPALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAF 797 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKST-------------------STFEDWEQAES 480 G M + + + V + + Sbjct: 798 KAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDTFGAERRKAKMLN 857 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + K W + V K + + Sbjct: 858 FSIAYGKTAVGLSQDWNVEVREARDTLKLWYRDRKEVSAWQKKQKALALEKCEVYTLL-- 915 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 R + ++ + R Sbjct: 916 ------------------------GRSRQFPNM---THAGPGQKGHVERAAINAPG---- 944 Query: 601 IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTK 653 Q + D+ M + G+ ++L VHDE++ E P ++ M+K Sbjct: 945 --QGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKSIVVECMSK 1002 Query: 654 NP--SWAKGLPLKAEGYEAKRY 673 + + L + AK + Sbjct: 1003 PFYGTNILKVDLAVDAKYAKSW 1024 >gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum] Length = 1076 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 77/528 (14%), Positives = 143/528 (27%), Gaps = 130/528 (24%) Query: 169 ATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L++ L+P E + L + G D L + E Sbjct: 648 VNIRLYEWLLPLATRLSSEKSVSLELESTELLARLEATGIAFDRQAGHDLLQRTKSEMSS 707 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDMSEGTLKSILSHSNI 270 L+ + +L + + LF+ GI T K +L Sbjct: 708 LEAEGRRLASMPF-NFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKEVLQRLAP 766 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +IL + + L L A S+GR+ F + TGR QN+ Sbjct: 767 KHRIAAIILKWRKLNTALSSSLQNLLRACRSNGRIH--ASFTTFTGTGRVQSVHPNVQNV 824 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + + S VRS +A G LV AD + +E RVLA Sbjct: 825 QKDALID-----------------------SLSVRSLFVAPPGFVLVSADYSQLELRVLA 861 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ ++ K F NG D + T + Sbjct: 862 GLSKDEGLCKLFRNGGDFFQTVTDRWN--------------------------------- 888 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 ++ +D+ Q V + + + + + + +++ Sbjct: 889 --ANTSIDVPLDRQKV----------KQLCYAIIYGMGAITLGERIGTTKQNAQHLIESF 936 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + V E + RR V++ Sbjct: 937 FKEFPKVRSWMDATLESCRRDACAVTILGRRRPLKCGESVVQSD---------------- 980 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVL 626 ++ R+ + +Q + +I + K IV+ Sbjct: 981 -------------RARAERQAI------NSTIQGSASEIFKSALLKLEKNLKDLDARIVM 1021 Query: 627 TVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 VHDE++ E + + + V + S M +PL + + Sbjct: 1022 QVHDEVIVELNEACFSTAVERIESAMLNALPEFP-VPLSVKISSGTNW 1068 >gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 317 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 65/420 (15%), Positives = 117/420 (27%), Gaps = 116/420 (27%) Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 L+ N + L+ +R I + L E V+ DGR+ T A TGR S Sbjct: 2 EELARYNPHPFLEALLYHRDRIKLLQI--VRNLRERVADDGRIHTTFGQTVA-ATGRLSS 58 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADL 381 QN+P + +R + L+ AD Sbjct: 59 IDPNLQNIP------------------------ARTVDGQKIREAFVPQKPYAALMTADY 94 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++G++ + AFA+GED++ + A + D+V+ QR+ K L Sbjct: 95 SQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGL-- 152 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 GL + + Sbjct: 153 ------------AYGLSAYGLAAQ------------------------------LNISQR 170 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + V + + V Sbjct: 171 DAKQLMDTYFERFGKVREYLNQIVATATRVGYTETM------------------------ 206 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619 RR +++ + + +Q + D++ M Sbjct: 207 --RGRRRYLPELRSTNRNVADNARRA---------ALNAPIQGSAADLMKAAMLQVDADL 255 Query: 620 ----NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYR 674 ++L VHDE+V E + TL MT +PL+ +R Sbjct: 256 RQEQLQSRVLLQVHDELVLEVAPGETERLETLVRQAMTGVAK--LRVPLEVSVGIGPNWR 313 >gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 2100 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 91/721 (12%), Positives = 169/721 (23%), Gaps = 224/721 (31%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-------------------LR-----DE 64 I A W++ PV + + + L Sbjct: 1470 EIHGIAICWENSPVYYINLPKDLLCSDERKNIYLTMNVSDDKPNILDANHRLEAAKWRWS 1529 Query: 65 TVMCVA---------HNSLFERILFKK-----------TLGIDIPSKRWICTSVLARTNG 104 V + N + + K L + I + Sbjct: 1530 KVGKIMGKKDVRKFTWNLKVQIQVLKNPAVSIQKFGSLNLAMRTMGLELID---NSYLML 1586 Query: 105 LP----SSLKN--ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 P L L E + + + + + R + + Sbjct: 1587 SPVYIVDGLDMCIVTWILWPDEERSSNPNLEKEVRKRLSSEAAAAANRSGRWKNQ-TRRA 1645 Query: 159 FGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 C R V TR L L L E L + + G +D++ ++ Sbjct: 1646 AHNGCCRRVAQTRALCSVLWKLLVSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQ 1705 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLK 262 + ++ ++ + L+++ +L + L+ + + T K Sbjct: 1706 ARNVLGKKLRHLEKEAYELAGMTFSLYTA-ADIANVLYGHLKLPIPEGHNKGKQHPSTDK 1764 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTL-----SEAVSSDGRLRGTLQFYGASRT 317 L +I + L ++ + L G ++ T Sbjct: 1765 HCLDLLRHEHPIIPVIKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQT-STAT 1823 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S Q L+ Sbjct: 1824 GRLSMEEPNLQ-------------------------------------------ENWLLL 1840 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 AD + IE R++A + + + + D++ AK P V ++R K + Sbjct: 1841 TADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLV 1900 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y G A + Sbjct: 1901 YGILYGMG--------------------------------------------ANTLAKQL 1916 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + E +++R+ GV L E AC ++G + + Sbjct: 1917 ECSLGEAEEKIRSFRSSFPGVASW---LHEAVACCCKKGYVKTLK--------------- 1958 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 R+ S +K S + +I Q + DI+ M N Sbjct: 1959 --------GRKRFLSKIKFGTSKEKLKARRQ---------AVNSICQGSAADIIKIAMIN 2001 Query: 617 AT-----------------------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMT 652 K I+L VHDE+V E + G L M Sbjct: 2002 IHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTME 2061 Query: 653 K 653 Sbjct: 2062 N 2062 >gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis] Length = 437 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 74/492 (15%), Positives = 145/492 (29%), Gaps = 117/492 (23%) Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E L L ++ G +D + + + +I K L++ L I Sbjct: 7 LNSYWNIELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPIL-MW 65 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 + + L+ ++ + + +S+L L++ S ++ L Sbjct: 66 SSKQVCEVLYDELKLEAPKGNRVSTESVLQTMADKHPFPGLVIEYRRLSKQMSTYIDGLE 125 Query: 297 E-------AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + + + T A+ TGR S Q LP++ Sbjct: 126 KEFVSVPFRSTETKLIYSTWNQ-MATGTGRLSTAAPNMQTLPKRSLERL----------- 173 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A ++L+ D IE RV A + + I F++G++ Sbjct: 174 --------SNLDVDIRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNSD 225 Query: 410 VTTYA--KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + T + V+++ R KV+ L L Y G+ ++ + +K Sbjct: 226 IYTMIASMIHKVEVKDVTQKFRDEAKVITLGLCY--------------GMGVESMASKLK 271 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 +K + + +GVLQ K+ Sbjct: 272 IPIL------------------------------TATQLKNSILNRFKGVLQFMKNTISS 301 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + S RR Y S Sbjct: 302 ARK--------------------------THFVETLSGRRR----------YFKAKDSGG 325 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTP--- 640 + +++Q + D+L M K +I+L +HDE+V + PD+ Sbjct: 326 EGLAHIDRQAVNSVIQGSAADLLKCAMILLWKPLSELDSEIILQIHDELVIDCPDSDEVC 385 Query: 641 YFSVGTLCSLMT 652 + L +M Sbjct: 386 EKVIALLNQVMC 397 >gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii] Length = 241 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 84/276 (30%), Gaps = 42/276 (15%) Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 T +L + ILN + + L + + G++ Q ++TG Sbjct: 1 TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQT-LTQTG 59 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLV 377 R S QN+P +R + G KL Sbjct: 60 RLSSVDPNLQNIP------------------------IRMEEGRKIRQAFVPQQAGWKLF 95 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 +D + IE RVLA I+G++ +AF G+DI+ +T + F + V+ R K + Sbjct: 96 ASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVN 155 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y L++ + + FE + + + + E + Sbjct: 156 FGVVYG-----ISDYGLSQNLNITRKAAQEFIDRYFEKYPGVKQFMEDIVKEAKENGYVE 210 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 L R + +L Sbjct: 211 TLFHR---------RRYLPDIHNRNFNLRSFAERTA 237 >gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818] Length = 830 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 87/571 (15%), Positives = 153/571 (26%), Gaps = 113/571 (19%) Query: 91 KRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 T V A + + G + + + Sbjct: 322 IAVRDTQVAAWLADPERAWDDMDDVFRLCQLRPVTR----GAGDLGDSSASASSQWLHKL 377 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + LF D EL+ RL E L + G ID + + Sbjct: 378 ASRHAAAFDHLFARLRACD---QAELYSRL------EAPAIWLLAEMQVHGIHIDTETLK 428 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDL----VDMSEG 259 + + I Q +L+ L + LR YL+ GI Sbjct: 429 QQRVQIQQCLAELEARAEALVGFKLL-LTSPLQLREYLYDQLQLHVGIPNFPRTPKGKLS 487 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T + L+ +L+L ++ ++ + V+ G L A +GR Sbjct: 488 TGEDALTLIKDRHELPNLLLLHRRAARLLCTYIDGVLPHVTH-GMLHPEWLQTSA-ASGR 545 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S Q++P +E + L L R+ +A G V Sbjct: 546 VSCQQPNIQSVPLRETALR------------------LDLLVVSPRAAYVAPGGCVYVSL 587 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D +E R+LA + ++ I F N E + A E Sbjct: 588 DWRQMELRLLAHFSEDEGLIALFQNQEAKA------------KANTPPSTANATSREE-- 633 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 G + FK +AS + + + + + ++ Sbjct: 634 --GGTSDPFKALASKWFCVPVEQVTGRQRDQ-----VKRCLYAFIYGSGALHLSKVLEVS 686 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + + +A+R +H + L + + R K Sbjct: 687 VHEAKKLLQAFRRRHPRIQHLRDQV--------------------------LIRLKETGF 720 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + S RR + D D S ++Q + DI M N + Sbjct: 721 VSCLSRRRRYFKDSANDHSQR---------------AAFNFLLQGSAADICKAAMINLRE 765 Query: 620 ------NGYDIVLTVHDEIVSETPDTPYFSV 644 +V +HDEI+ E P+ V Sbjct: 766 FLRAKQMRSFMVAQLHDEIILECPEKEAKEV 796 >gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 552 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 78/440 (17%), Positives = 134/440 (30%), Gaps = 68/440 (15%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 S L V + +I A + + D T S + DL+ T + Sbjct: 176 TSKIKLSAETVVHIIDDKII----IAPNRSKAFICDVTNASDLVFDLI-----STTKMIC 226 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA 130 ++ + + L I+I + + L L+ + G Sbjct: 227 YDVK-DTLHKLNALNINIVVDKVFDIKQASFLIDP----------LIRDRSLSSIVVG-- 273 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + + F AT D + L L Sbjct: 274 --EIDESNPAVVITAIWNAYDTQM--EKFKNDKILYKIAT-----------DFDFPLAPL 318 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT- 249 + RG +I+ + + I ++ ++L + I + G + L LF+ Sbjct: 319 LFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIA-GYNFNIASPAQLSDMLFIKLQ 377 Query: 250 ----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 GI T + L+ +LI + ++ L + V + RL Sbjct: 378 LPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLVDKNYRL 437 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T S TGR S QN+P +R Sbjct: 438 HTTFNQDVVS-TGRLSSTHPNLQNIP------------------------IRSTLGKKIR 472 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + IA LV AD + E R+ A +AG++ I F N DI+ T + + P+D+V+ Sbjct: 473 NAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVT 532 Query: 426 KEQRAIGKVMELALGYQGGA 445 QR KV+ + Y Sbjct: 533 SNQRRNAKVINFGVLYGMSP 552 >gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa] gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa] Length = 646 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 84/559 (15%), Positives = 144/559 (25%), Gaps = 94/559 (16%) Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------- 181 K + R ++ + + N ++ C R V TR L L L Sbjct: 128 KEVKKRLSSEAVAAANQNGRWKNQMRRVAH--NGCCRRVAQTRALCSGLWKLLTSEGLFE 185 Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E L + + G +D++ L + ++ + + L++ KL Sbjct: 186 ALKNIEIPLVNVLADMELWGIGVDMEGCLNARTVLGKRLRYLEKKAYKLAGMTFSLYTA- 244 Query: 239 YALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ + + T K L +I + L Sbjct: 245 ADIANILYRHLKLPIPEGHNKGKKHPSTDKHCLDLLRHEHPIVPVIREHRTLAKLLNSTL 304 Query: 293 NTL-----SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ + L G ++ TGR S Q + Sbjct: 305 GSICSLARLSMETQKYTLHGHWLQT-STATGRLSIEEPNLQ--------CVEHAVDFEMS 355 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + E R + + L+ AD + IE R++A + + IK Sbjct: 356 SDKEGDDAEPEHYKINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDTALIKLLTKPH 415 Query: 407 -DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D++ A+ P VS +R K M + Y GA LD Sbjct: 416 GDVFNLIAARWTGKPEASVSSVERDQTKRMVYGILYGMGANTLAE-----QLDCSSDEAA 470 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 K S + S E + + G L K + Sbjct: 471 EKIKSFKSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKFGNS------------ 518 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 Q S + + + + IV R Sbjct: 519 -EEKSKAQRQAVNSICQGSAADLIKIAMINIHSLIVDGVGR------------------- 558 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 + K M K I+L VHDE+V E + Sbjct: 559 -PESSSLHANKFH---------------ML---KGQCRILLQVHDELVLEVDPSLINEAA 599 Query: 646 TLCSL-MTKNPSWAKGLPL 663 L + M S +PL Sbjct: 600 VLLQMSMEDAASLL--VPL 616 >gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 180 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 19/189 (10%) Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L + + +WR + + W D+ + + R + Sbjct: 1 MGLSEEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQRIQTEVRG------ICFFYKS 54 Query: 556 RDVHIVLPSSRRLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAIS 606 + I LPS R L Y + G+ Y +T + R +YG K ENIVQA+S Sbjct: 55 GMLFIKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVS 114 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RDILC MK IV VHDE++ E +V +C M ++P W + L+A+ Sbjct: 115 RDILCYAMKTL--RHCFIVGHVHDELIIECSPDVDTNV--ICKQMGRSPDWMPDILLRAD 170 Query: 667 GYEAKRYRK 675 GYE Y+K Sbjct: 171 GYETNFYKK 179 >gi|22330154|ref|NP_175498.2| POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] gi|332194474|gb|AEE32595.1| polymerase gamma 2 [Arabidopsis thaliana] Length = 1050 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 95/365 (26%), Gaps = 88/365 (24%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 742 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 781 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +AS G LVVAD +E R+LA + G ++AF G D + T Sbjct: 782 ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 835 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V Q G D + + Sbjct: 836 YPHVREAVENGQV------------------ILEWHPEPGEDKPPVPLLKDAFGSERRKA 877 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W Q V + + + Sbjct: 878 KMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLT 937 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + K + + R Sbjct: 938 LL--------------------------GRSRRFPASKS-----RAQRNHIQRAAI---- 962 Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M K G+ ++L +HDE++ E P + Sbjct: 963 --NTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVD 1020 Query: 650 LMTKN 654 M+K Sbjct: 1021 CMSKP 1025 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 62/297 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E +V + + + + + +W D + + Sbjct: 292 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 347 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSL 109 + Y D + V HN F+ + + GI+I T +AR SL Sbjct: 348 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 405 Query: 110 KNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L + K GK + + + Sbjct: 406 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIP-PVEELQREDR 464 Query: 157 QLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW----LLDQTI 194 + + Y D +T +L++ + + D + W L + Sbjct: 465 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 524 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 G +D + + +++++ E++ D + LR F Sbjct: 525 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 581 >gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis] Length = 2382 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 91/750 (12%), Positives = 180/750 (24%), Gaps = 170/750 (22%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAM---------------------PSDLLQYLRDETVMC 68 + A W ++ + + + L + Sbjct: 1689 LIGLAVCWGSRDAYYISLQQEQSAGSFSSSLAPPPLDDDLGLRERLAQVKTCLGQPS--- 1745 Query: 69 VAHN-----SLFER----ILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLAL 116 AH+ ++ + + GI + V +L N Sbjct: 1746 -AHHGDRVLIAYDIIRTYKVLVLSCGISLEG-SCEDPKVACWLLDPGSEERTLPNMVTVY 1803 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E G + P V + + G Sbjct: 1804 CPEELPLLGGLGSSH---------THCPRVRASTASVLTYAVMGRLTGL-----LREDGV 1849 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E + + G + + ++ + L+ G S Sbjct: 1850 LDHFRSVEMPSQVCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAY-RLAGHSFSLT 1908 Query: 237 QTYALRMYLFLITGID-----LVDMSEGTL--------------------KSILSHSNIT 271 + LFL + S+ TL K +L Sbjct: 1909 SVDDVAQVLFLELHLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLRPL 1968 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRT--------- 317 LIL + + + L R+ Q + A+ Sbjct: 1969 HPLPGLILEWRRITNALTKVVFPLQREKKHHSALSMDRIYPIAQTHTATGNPQTPEPCET 2028 Query: 318 ------------GRWSGCVFQPQNLPR-------------QERSEEILTQTIQALNRGET 352 GR S QN+P+ + + R Sbjct: 2029 CNMRWLSLVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSA 2088 Query: 353 IADPLGLASDC-------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 + S+ +R + +G ++ AD + +E RVLA ++ + ++ G Sbjct: 2089 VPSGAAAGSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGG 2148 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D++ A+ + D V+ R K + + Y GAK + +++ Sbjct: 2149 ADVFRCIAAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGE-----QMGVEENDAA 2203 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + L+G R G+ + Sbjct: 2204 CYIETFKSRYRGINAFLKETVKNCGKNGYVQTLMGR---------RRYLPGITNTNAHVK 2254 Query: 526 EGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 V SA + + + +++ R + P L + A Sbjct: 2255 AHAERQAVNTTVQGSAADIVKLATVNIQKRLRQTYPAAP----LSHQHPAPVMGRFCGAG 2310 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 S R T + GY VL +HDE++ ET D V Sbjct: 2311 SSRRRAVTRHPRG-----------------------GYF-VLQLHDELIYETTDEDVIQV 2346 Query: 645 GTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 + M + ++A+ + Sbjct: 2347 AQIVKREMETAVKLY--VKMRAKVKVGPSW 2374 >gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana] gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein [Arabidopsis thaliana] gi|71013470|dbj|BAE10873.1| PolI-like A DNA polymerase [Arabidopsis thaliana] Length = 1049 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 95/365 (26%), Gaps = 88/365 (24%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 741 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 780 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +AS G LVVAD +E R+LA + G ++AF G D + T Sbjct: 781 ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 834 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V Q G D + + Sbjct: 835 YPHVREAVENGQV------------------ILEWHPEPGEDKPPVPLLKDAFGSERRKA 876 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W Q V + + + Sbjct: 877 KMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLT 936 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + K + + R Sbjct: 937 LL--------------------------GRSRRFPASKS-----RAQRNHIQRAAI---- 961 Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M K G+ ++L +HDE++ E P + Sbjct: 962 --NTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVD 1019 Query: 650 LMTKN 654 M+K Sbjct: 1020 CMSKP 1024 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 62/297 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E +V + + + + + +W D + + Sbjct: 291 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 346 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSL 109 + Y D + V HN F+ + + GI+I T +AR SL Sbjct: 347 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 404 Query: 110 KNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L + K GK + + + Sbjct: 405 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIP-PVEELQREDR 463 Query: 157 QLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW----LLDQTI 194 + + Y D +T +L++ + + D + W L + Sbjct: 464 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 523 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 G +D + + +++++ E++ D + LR F Sbjct: 524 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 580 >gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] Length = 1047 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 96/365 (26%), Gaps = 88/365 (24%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 739 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 778 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +AS G LVVAD +E R+LA + G ++AF G D + T Sbjct: 779 ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 832 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V Q G D + + Sbjct: 833 YPHIREAVENGQV------------------ILEWHPQPGEDKPPVPLLKDAFGSERRKA 874 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + K W Q V + + + Sbjct: 875 KMLNFSIAYGKTAIGLSRDWKVSVEEAQDTVKLWYNDRQEVRKWQERRKKEAIEDGYVRT 934 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + K + + R Sbjct: 935 LL--------------------------GRSRRFPRYKS-----RAQKNHIQRAAI---- 959 Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M K G+ ++L +HDE++ E P + Sbjct: 960 --NTPVQGSAADVAMCAMLEISTNQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVD 1017 Query: 650 LMTKN 654 M+K Sbjct: 1018 CMSKP 1022 >gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia] gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia] Length = 2006 Score = 170 bits (431), Expect = 6e-40, Method: Composition-based stats. Identities = 91/666 (13%), Positives = 181/666 (27%), Gaps = 122/666 (18%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVA 70 ++ + I+ ++ D W+ +L + + + V Sbjct: 1426 LFQVDDSTFISCVSFCLADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVM 1485 Query: 71 HNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTK 124 H+ + + +K I + + V + N C Sbjct: 1486 HDGKEQLKMLRKAIPQLQKISVKLE---DAKVANWLLQPDKTVNFLNMCQTFAPECTGLA 1542 Query: 125 MEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 G + + S P T + + L D Sbjct: 1543 NLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILKGQIENLGRI--GEGDLLKFFHD 1600 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + L + G+ + +L + + KKL+ I + G + + A+ Sbjct: 1601 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQH-GSRFNLGSSQAVA 1659 Query: 243 MYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 L G+ T + +L N LIL S + L E + Sbjct: 1660 KVL----GLHRKAKGRVTTSRQVLEKLNSP--ISHLILGYRKLSCLLAKSIQPLMECCQA 1713 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ G Y A TGR S QN+ ++ I + Sbjct: 1714 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FCIQVGADAVN 1753 Query: 362 DCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 RS + + L+ AD +E R+LA ++ + ++ + +D+++ A Sbjct: 1754 ISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIK 1813 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 +V+ + R K + + Y G + L+ + + S E ++ Sbjct: 1814 ESEVTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARILSDQFHEAYKGIRD 1868 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + + + G L + + L + V SA Sbjct: 1869 YTRRVVNFARGKGFVETITGRRRYLEM---------INSDMEHLKKAERQAVNSTIQGSA 1919 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 +A L M ++ L Sbjct: 1920 ADIAKNAILKMEKNIERYREKLALG----------------------------------- 1944 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK 659 D+V+ +HDE++ E P + + S+ M Sbjct: 1945 ------------------DKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--L 1984 Query: 660 GLPLKA 665 +PLK Sbjct: 1985 SVPLKV 1990 >gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme DSM 15981] gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme DSM 15981] Length = 711 Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 89/320 (27%), Gaps = 42/320 (13%) Query: 83 TLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKG 138 L I V + L + GK + Sbjct: 423 YLDIPYDG-PVFDAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLLGKQSLG-DALW 480 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDR 197 D C A + +R + +LF + E L ++ Sbjct: 481 MKDPKAVSCACYMGYVAMKAAAPLTERLKQTGMYQLF------IEIEMPLIYSLSSMEQA 534 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +++ + + + + + L+++I + T + L LF + + Sbjct: 535 GVKVEREELKEYGSRLKVQIDVLEQEIYRDTGKEF-NINSPKQLGEILFGDMALPGGKKT 593 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L IL+ + L+ + SDGR+ G Sbjct: 594 KTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLYSTYAEGLAAFIGSDGRIHGKFNQT-I 652 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P +R + G Sbjct: 653 TATGRISSTEPNLQNIP------------------------VRMELGREIRKVFVPREGS 688 Query: 375 KLVVADLAGIEARVLAWIAG 394 V AD + IE R+LA ++G Sbjct: 689 VFVDADYSQIELRILAHMSG 708 >gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group] Length = 2044 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 97/739 (13%), Positives = 183/739 (24%), Gaps = 225/739 (30%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------ 55 S+ D+ + + + I A W++ PV + + M Sbjct: 1406 SEFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIE 1459 Query: 56 ----------DLLQYLRDETVMCVAHNSLFERILFKK-----------TLGIDI-PSKRW 93 +++ +R +V + N F+ K L + + Sbjct: 1460 MWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEV 1519 Query: 94 ICTSVLARTNGLPSS----LK--NACLALNFSEHLTKMEEGKAL-IARFCKGSIDSPPYD 146 + P S L L E + + L R + + D Sbjct: 1520 LDNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAANRD 1576 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTIND 196 N + C R TR L L L E L + + Sbjct: 1577 GRWRNQMHKAAH--NGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMEL 1634 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G D+D L+ + +I ++ K+L+++ KL G S T + L+ + + Sbjct: 1635 WGIGADMDACLRARHIIIRKLKELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKG 1693 Query: 257 ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T K L H +I + LN ++ S +L Q Sbjct: 1694 CGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKL----LNGTLGSICSRAQLCSKSQ 1749 Query: 311 FY--------GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 Y ++ TGR S Q Sbjct: 1750 RYIIQGNWLQTSTATGRLSMEEPNLQ---------------------------------- 1775 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPI 421 LV AD + IE R++A + + I+ + + D++ ++ Sbjct: 1776 ---------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAE 1826 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + ++R K + G+ Sbjct: 1827 SLICSKERETTKRFIYGIL--------------YGMG----------------------- 1849 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A + + ++++ GV + + Sbjct: 1850 -------ANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLM--- 1899 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 RR S + S ++ R+ +I Sbjct: 1900 -----------------------GRRRFLSKITAGNSKEK---AKAQRQA------VNSI 1927 Query: 602 VQAISRDILCEGMKNAT--------------------------KNGYDIVLTVHDEIVSE 635 Q + DI+ M + ++L VHDE+V E Sbjct: 1928 CQGSAADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLE 1987 Query: 636 TPD-TPYFSVGTLCSLMTK 653 +V L ++M Sbjct: 1988 VDPCMVAEAVRLLQTVMEN 2006 >gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica Group] Length = 2065 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 97/739 (13%), Positives = 183/739 (24%), Gaps = 225/739 (30%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------ 55 S+ D+ + + + I A W++ PV + + M Sbjct: 1427 SEFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIE 1480 Query: 56 ----------DLLQYLRDETVMCVAHNSLFERILFKK-----------TLGIDI-PSKRW 93 +++ +R +V + N F+ K L + + Sbjct: 1481 MWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKYPCVSCQRLSRLHLDYKMLKNVEV 1540 Query: 94 ICTSVLARTNGLPSS----LK--NACLALNFSEHLTKMEEGKAL-IARFCKGSIDSPPYD 146 + P S L L E + + L R + + D Sbjct: 1541 LDNL---YVFLQPVSVHSGLDICLVAWVLWPDEESKTVPNLEKLVKRRLHNEAAAAANRD 1597 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTIND 196 N + C R TR L L L E L + + Sbjct: 1598 GRWRNQMHKAAH--NGCCRRAAQTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMEL 1655 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G D+D L+ + +I ++ K+L+++ KL G S T + L+ + + Sbjct: 1656 WGIGADMDACLRARHIIIRKLKELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKG 1714 Query: 257 ------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T K L H +I + LN ++ S +L Q Sbjct: 1715 CGKGKLHPSTDKQSLDHLRDQHPIISVIKEHRTLAKL----LNGTLGSICSRAQLCSKSQ 1770 Query: 311 FY--------GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 Y ++ TGR S Q Sbjct: 1771 RYIIQGNWLQTSTATGRLSMEEPNLQ---------------------------------- 1796 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPI 421 LV AD + IE R++A + + I+ + + D++ ++ Sbjct: 1797 ---------ENWLLVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAE 1847 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + ++R K + G+ Sbjct: 1848 SLICSKERETTKRFIYGIL--------------YGMG----------------------- 1870 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A + + ++++ GV + + Sbjct: 1871 -------ANSLAEQLECSPEDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLM--- 1920 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 RR S + S ++ R+ +I Sbjct: 1921 -----------------------GRRRFLSKITAGNSKEK---AKAQRQA------VNSI 1948 Query: 602 VQAISRDILCEGMKNAT--------------------------KNGYDIVLTVHDEIVSE 635 Q + DI+ M + ++L VHDE+V E Sbjct: 1949 CQGSAADIIKVAMIKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLE 2008 Query: 636 TPD-TPYFSVGTLCSLMTK 653 +V L ++M Sbjct: 2009 VDPCMVAEAVRLLQTVMEN 2027 >gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 671 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 64/498 (12%), Positives = 134/498 (26%), Gaps = 106/498 (21%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E + + + G D + + + ++L+ + K I + + Sbjct: 239 DVEAKVAVALGVLQHHGVGFDRTRADEQRRAANRRVEELEREAQKCIGVDI-NLASAQQV 297 Query: 242 RMYLFLITGIDLV-----DMSEGT-----LKSILSHSNITQLAKDLILNRLASS-GSAIL 290 L+ + S+ + ++ + S A+ ++ +R A + Sbjct: 298 ADVLYNKLKLPTPSAHAMKGSKSSHLSTSVEVLQSLVKHHHFAQIVLNHRGALKERAMCD 357 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + S +++DGR R Q+ + TGR S Q + R Sbjct: 358 NYDK-SAVIAADGRARIHTQWNNTKTATGRLSSSHPNIQQVGRGT--------------- 401 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DI 408 +R+C +A G+ + AD + IE RVLA ++G+D I + D+ Sbjct: 402 --------------MRNCFVAPTGRTFIAADYSQIELRVLAHLSGDDRLISLLRQAKGDV 447 Query: 409 YVTTYAKAFNTPIDKVS-KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +V + P+D + K R I K + Y L + + Sbjct: 448 FVAIWNAGKGLPLDAPAEKSTRDIAKRTAYGIVYGQ-----HATGLAEKLGVPKSEAQGY 502 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + + + + + L + Sbjct: 503 IAAFHRAFPKVNQWITRVLQRAEQTGAVT--------LPMSGRHRALPKIHSKVFSERSE 554 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + TA + Sbjct: 555 AQRQAVNTIIQGT-----------------------------------AADMMKTAMLRW 579 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY-FSVGT 646 G+ ++ K +V +HDE++ E + Sbjct: 580 T-SAVGAGRFANDVAPGS-----------VNKKRVTLVAQIHDELLFEVDEDYVPECARA 627 Query: 647 LCSLMTKNPSWAKGLPLK 664 + ++M A P+K Sbjct: 628 VKNVMENAIKLAVPTPIK 645 >gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158] gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158] Length = 248 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 99/324 (30%), Gaps = 88/324 (27%) Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R IA+ G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ Sbjct: 2 RTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEV 61 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F +V+ +QR I KV+ G+ Sbjct: 62 FGVTPLEVNADQRRIAKVIN--------------FGLIYGMS------------------ 89 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 A + A +L + ++ GV Q ++ Sbjct: 90 ------------AFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMENTRASAKEKGYVET 137 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 RRL ++ G A R Sbjct: 138 VF--------------------------GRRLWLPEINGGNGPRRQAA---ERAAINAP- 167 Query: 597 LTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649 +Q + D++ M K +++ VHDE+V E PD V L Sbjct: 168 -----MQGTAADLIKLSMIAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPE 222 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M +PL AE + Sbjct: 223 MMCGVAK--LKVPLVAEVGAGANW 244 >gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium] Length = 283 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 92/375 (24%), Gaps = 100/375 (26%) Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 GR+ + A TGR S QN+P Sbjct: 3 KTGRVHTSYNQAVA-VTGRLSSNNPNLQNIP------------------------VRTER 37 Query: 361 SDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R + L+ AD + IE R++A I+G+ +AF G+DI+ T AK +N Sbjct: 38 GREIRKAFVPRDENHLLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNI 97 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+KE R K + + Y G L + + + + + + Sbjct: 98 EEADVTKEMRYKAKSVNFGIIYGQG-----AFGLAENLKITRSEAKEIIDNYKKQFPNIQ 152 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + L G L + + + Sbjct: 153 QYMDAQMKFAQQNGYVETLWGRKRWL---------KDINSGNFTVRGYAERNAINMPIQG 203 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 +L + + + Sbjct: 204 TAADMI---------------------KLAMIKIHREFKDRGFKSK-------------- 228 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWA 658 M L VHDE+V + + + M Sbjct: 229 --------------MI----------LQVHDELVFDAWKDEVDIIKPIIIECMQSALPLP 264 Query: 659 KGLPLKAEGYEAKRY 673 +P AE + Sbjct: 265 NDVPANAEIGVGVNW 279 >gi|125560330|gb|EAZ05778.1| hypothetical protein OsI_28011 [Oryza sativa Indica Group] Length = 1033 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 85/790 (10%), Positives = 172/790 (21%), Gaps = 165/790 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 284 ACDTE-VANIDVKEETP---VGHGEVICFSICSGNSDGEADFGNGKTCIWVDVLDGGRDV 339 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 340 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRTDGG 396 Query: 107 SSLKNACLALNF-----------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ + K G+ + + + + + Sbjct: 397 YSLEGLTNDHRVMDAVVKDIPKTGKVSMKTIFGRKKVRKDGSEGK-TISIEPVEKLQRED 455 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIN 195 +L+ Y D +T +L++ L + E + W L + Sbjct: 456 RELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDDCPRGTMYDFYEEYWRPFGALLVKME 515 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF---- 246 G +D + ++++ ER+ + K D + +R F Sbjct: 516 TEGVLVDRAYLSEIEKAAVTERELAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIE 575 Query: 247 --LITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-------- 294 G + ++ I I Sbjct: 576 NRNKRGETWPQSKTFKVPNDEGITTEGKKTPKSRTIKLFTIVEDLKIDMFTPTGWPSVSG 635 Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L R G S Q++ E Sbjct: 636 DVLRSLAGKIPTNRIYKIDDGQEFDEDGSSLELPEQDIEDTSLYGTAYEAFGGGNKGREA 695 Query: 353 IADPLG-----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWI------AGEDWKIKA 401 + I+ G + + I + A Sbjct: 696 CHAIAALCEVFSIDKLISGFIVPLQGDR-ISCKEGRIHCSLNINTETGRLSARTPNLQNQ 754 Query: 402 FANGEDIYVTTYAKA-----FNTPIDKVSKEQRAIGKVMEL-----ALGYQGGAKVFKTM 451 A +D Y A D E R + + A G M Sbjct: 755 PALEKDRYKIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAM 814 Query: 452 ASHCGLDLQQFSQNVKST---STFEDWEQAESHHLWMQDQYPE-------FAVKDKLIG- 500 + + + V ++ + + A +G Sbjct: 815 NMYQHVRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGL 874 Query: 501 --------TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 K W + V K + + Sbjct: 875 SWDWKVEVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLL-------------- 920 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 R + ++ + R VQ + D+ Sbjct: 921 ------------GRSRQFPNM---THAGPGQKGHVERAAINAP------VQGSAADVAMC 959 Query: 613 GMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPL 663 M + G+ ++L VHDE++ E P T+ M+K + + L Sbjct: 960 AMLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDL 1019 Query: 664 KAEGYEAKRY 673 + AK + Sbjct: 1020 AVDAKYAKSW 1029 >gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding [Arabidopsis thaliana] gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana] gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana] gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana] Length = 1034 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 54/386 (13%), Positives = 105/386 (27%), Gaps = 90/386 (23%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 726 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 765 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R IAS G L+VAD +E R+LA +A + +AF G D + T Sbjct: 766 ------KIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNM 819 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V + G + + ++ Sbjct: 820 YPHIREAVENGEV------------------LLEWHPQPGQEKPPVPLLKDAFASERRKA 861 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W Q V + + + Sbjct: 862 KMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLT 921 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + + + + + R Sbjct: 922 LL--------------------------GRARKFPEYRS-----RAQKNHIERAAI---- 946 Query: 597 LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M + G+ ++L VHDE++ E P + + + Sbjct: 947 --NTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVN 1004 Query: 650 LMTKNP--SWAKGLPLKAEGYEAKRY 673 M++ + L + A+ + Sbjct: 1005 CMSEPFNGKNILSVDLSVDAKCAQNW 1030 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 66/299 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E S + + + + + D +W D + + Sbjct: 270 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 325 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + D ++ V HN F+ + + I + T +AR S Sbjct: 326 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 382 Query: 109 LKNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 L+ L F + K GK + + + ++ Sbjct: 383 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIP-PVKELQMED 441 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQT 193 + + Y D +T +L++ + D ++ W L Sbjct: 442 REAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAK 501 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD------EDIVKLTDGIIRSSRQTYALRMYLF 246 + G +D D + + E++A+ +++ D + LR F Sbjct: 502 MESEGMLVDRDYLAQ-IEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFF 559 >gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster] gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster] Length = 2059 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 89/654 (13%), Positives = 178/654 (27%), Gaps = 115/654 (17%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVAHNSLFERIL 79 I+ ++ D W+ +L + + + V H+ + + Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546 Query: 80 FKKTLG-IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEG--KALIAR 134 +K + + S + V + N C G + + Sbjct: 1547 LRKAIPQLKRISAKLEDAKVANWLLQPDKTVNFLNMCQTFAPECTGLANLCGSGRGYSSY 1606 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 S P T + + L D E + L + Sbjct: 1607 GLDTSSAILPRIRTAIESCVTLHILQGQTENLSRI--GNGDLLKFFHDIEMPIQLTLCQM 1664 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G+ + +L + + KK++ I + G + + A+ L G+ Sbjct: 1665 ELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQH-GSRFNLGSSQAVAKVL----GLHRK 1719 Query: 255 DMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 T + +L N LIL SG + L E +D R+ G Y Sbjct: 1720 AKGRVTTSRQVLEKLNSP--ISHLILGYRKLSGLLAKSIQPLMECCQAD-RIHGQSITYT 1776 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372 A TGR S QN+ ++ +I + RS + Sbjct: 1777 A--TGRISMTEPNLQNVAKE-----------------FSIQVGSDVVHISCRSPFMPTDE 1817 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 + L+ AD +E R+LA ++ + ++ + +D+++ A +V+++ R Sbjct: 1818 SRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNST 1877 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y G + L+ + + S + ++ + + + Sbjct: 1878 KQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSK 1932 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + G R + + + L + Sbjct: 1933 GFVETITGR---------RRYLENINSDVEHLKNQAERQAVNSTIQGS------------ 1971 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 N Y KL Sbjct: 1972 ----------------------AADIAKNAILKMEKNIERYREKLA-------------- 1995 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 N D+V+ +HDE++ E P + + SL M +PLK Sbjct: 1996 ----LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK--LSVPLKV 2043 >gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana] Length = 1088 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 54/386 (13%), Positives = 105/386 (27%), Gaps = 90/386 (23%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 691 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 730 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R IAS G L+VAD +E R+LA +A + +AF G D + T Sbjct: 731 ------KIRQAFIASPGNSLIVADYGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNM 784 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V + G + + ++ Sbjct: 785 YPHIREAVENGEV------------------LLEWHPQPGQEKPPVPLLKDAFASERRKA 826 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W Q V + + + Sbjct: 827 KMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLT 886 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + + + + + R Sbjct: 887 LL--------------------------GRARKFPEYRS-----RAQKNHIERAAI---- 911 Query: 597 LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M + G+ ++L VHDE++ E P + + + Sbjct: 912 --NTPVQGSAADVAMCAMLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVN 969 Query: 650 LMTKNP--SWAKGLPLKAEGYEAKRY 673 M++ + L + A+ + Sbjct: 970 CMSEPFNGKNILSVDLSVDAKCAQNW 995 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 66/299 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E S + + + + + D +W D + + Sbjct: 235 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 290 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + D ++ V HN F+ + + I + T +AR S Sbjct: 291 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 347 Query: 109 LKNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 L+ L F + K GK + + + ++ Sbjct: 348 LEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIP-PVKELQMED 406 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQT 193 + + Y D +T +L++ + D ++ W L Sbjct: 407 REAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEYWQPFGELLAK 466 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD------EDIVKLTDGIIRSSRQTYALRMYLF 246 + G +D D + + E++A+ +++ D + LR F Sbjct: 467 MESEGMLVDRDYLAQ-IEIVAKAEQEIAVSRFRNWASKHCPDAKHMNVGSDTQLRQLFF 524 >gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster] Length = 2059 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 89/654 (13%), Positives = 178/654 (27%), Gaps = 115/654 (17%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVAHNSLFERIL 79 I+ ++ D W+ +L + + + V H+ + + Sbjct: 1487 ISGVSFCLADNVAYYWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKM 1546 Query: 80 FKKTLG-IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEG--KALIAR 134 +K + + S + V + N C G + + Sbjct: 1547 LRKAIPQLKRISAKLEDAKVANWLLQPDKTVNFLNMCQTFAPECTGLANLCGSGRGYSSY 1606 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 S P T + + L D E + L + Sbjct: 1607 GLDTSSAILPRIRTAIESCVTLHILQGQTENLSRI--GNGDLLKFFHDIEMPIQLTLCQM 1664 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G+ + +L + + KK++ I + G + + A+ L G+ Sbjct: 1665 ELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQH-GSRFNLGSSQAVAKVL----GLHRK 1719 Query: 255 DMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 T + +L N LIL SG + L E +D R+ G Y Sbjct: 1720 AKGRVTTSRQVLEKLNSP--ISHLILGYRKLSGLLAKSIQPLMECCQAD-RIHGQSITYT 1776 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372 A TGR S QN+ ++ +I + RS + Sbjct: 1777 A--TGRISMTEPNLQNVAKE-----------------FSIQVGSDVVHISCRSPFMPTDE 1817 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 + L+ AD +E R+LA ++ + ++ + +D+++ A +V+++ R Sbjct: 1818 SRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQDLRNST 1877 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y G + L+ + + S + ++ + + + Sbjct: 1878 KQVCYGIVYGMGMRSLAE-----SLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFAHSK 1932 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + G R + + + L + Sbjct: 1933 GFVETITGR---------RRYLENINSDVEHLKNQAERQAVNSTIQGS------------ 1971 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 N Y KL Sbjct: 1972 ----------------------AADIAKNAILKMEKNIERYREKLA-------------- 1995 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 N D+V+ +HDE++ E P + + SL M +PLK Sbjct: 1996 ----LGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVK--LSVPLKV 2043 >gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis] Length = 2117 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 93/700 (13%), Positives = 178/700 (25%), Gaps = 148/700 (21%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG--- 85 + A +W + + ++L V + + K LG Sbjct: 1485 RLEGVAVSWRSGQAFYVPLHRRDDLLAELRPLFWSAAVEKATWDLRGQLAALAKVLGPGA 1544 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN------ACLALNFSEH-LTKMEEGKA-----LIA 133 + +P + A G P +L++ L + K E + Sbjct: 1545 LGVPGDQ------AA---GCPLALRDPLVDVRVAAWLGTPDDGRLKDESSHSVGSGRKEP 1595 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQL-------FGEYCKRDVEATRELFKRLIPLSDGERD 186 + A Q Q R R++++ L G+ + Sbjct: 1596 YTLSDMLKIRGGQAVWAEATQGMQASTAASGARRADAGRRAAQARKMWQLLRSRLRGD-E 1654 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + + ++L+ S + LF Sbjct: 1655 LLPPLWRTEMPLEPM-----------LQRRIEELEGMAHAEAGQEF-SLSSPQEVSRILF 1702 Query: 247 LITGI-------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + + DL T + +L + +A+ + +R + L V Sbjct: 1703 EVLKLAPPPCAKDLKSGGYSTGQEVLLELHEHPIARLIFEHRKLRTLLNRQGGPGLLPFV 1762 Query: 300 S--------------SDG----RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 G R+RG++ T R + Q +P+ + +LT Sbjct: 1763 QGFKMHLAYAEAVSYPGGLVLKRIRGSINQ-----TCRLAMDEPNLQCVPKPRAYKVLLT 1817 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L + A + +R+ +A G L+ AD IE R++A +G+ + Sbjct: 1818 PG--ELGSAASGASAHADRTANLRAAFVAPPGCVLLSADYRQIEFRLMAHFSGDPGLARV 1875 Query: 402 F-ANGEDIYVTTYAKAFNTPIDK-------------VSKEQRAIGKVMELALGYQGGAKV 447 F +G D + A+ P ++ V+++QR K + L Y GA Sbjct: 1876 FSEDGADPFRLLAAQWLGAPQEQARPRGWLGRGRRGVTQQQRDHAKQLTYGLLYGMGAAK 1935 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 L E+ + + + L G Sbjct: 1936 LADE-----LGCSVAEARTAQEKFRASMPGIEAWQARVVAECRRLGYVETLAGR------ 1984 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R + +G E + + + L V I + Sbjct: 1985 ---RRYLPNIN-----CRDGRKRAAAERQAKNTVCQGSAADL---AKAAMVAIHTRLAAW 2033 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 L + +VL Sbjct: 2034 LALGSGGNCGCGGGPGGGP-------------------AA---------------RLVLQ 2059 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTK-NPSWAKGLPLKA 665 +HDE + E + V L M +PL+ Sbjct: 2060 IHDEFLLEVAEPLLEPVARLVRDCMEGLASGVRLRVPLRV 2099 >gi|118362992|ref|XP_001014571.1| DNA polymerase I family protein [Tetrahymena thermophila] gi|89296488|gb|EAR94476.1| DNA polymerase I family protein [Tetrahymena thermophila SB210] Length = 988 Score = 167 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 114/409 (27%), Gaps = 87/409 (21%) Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + LI + + + L E DGR+ +L + TGR S N P Sbjct: 656 HAIESLIQLKQVETLL-TTFIIPLRELADKDGRIHCSLNMN--TETGRISARKPNLMNQP 712 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 ++ +RS A G KL+VAD +E R+LA Sbjct: 713 SHDKDVY------------------------KIRSAFQAGKGNKLIVADYGQLELRILAH 748 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + I+AF G D + T + + + EL L + Sbjct: 749 MTNCKAMIEAFKMGGDFHSRTAMGM--------YPKLKEEIEKGELLLEWDKSQG----- 795 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 S+ + + + F+ + AW Sbjct: 796 -------EPPAPLLKDKYSSERKKAKMMNFSIAYGKSAHGFSKDWNCSMKEAQEALDAWF 848 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A + V + ++ + + R S+R LV Sbjct: 849 ADRKEVKEWQENTKKIALEHGYTQTMMGRYRNLERLTHSK------------SARHLVQH 896 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIV 625 ++ +Q + D++ M + GY ++ Sbjct: 897 GLRASI---------------------NTPIQGGAADLVIAAMVKVSQDPKLNELGYKLL 935 Query: 626 LTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L +HDE++ E P+ ++ + +M L ++ + + Sbjct: 936 LQIHDELILEGPEEHAQEALARVIEIMENPLDTPLLLKMEVDAKVGNNW 984 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 15/129 (11%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVIT------LCAYAWDDEPVKLWD-RTEQSAMPSDLLQ 59 D ET + + + I + + P D + + + + Sbjct: 97 DTETI-DVDAK---LESPIGKGKIICASAFCGIDVDFGNGPRLFIDNFAQNTDLIQIFKE 152 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK--NACLALN 117 YL D + HN F+R +F GI++ T LAR K + Sbjct: 153 YLEDSRYKKIWHNYGFDRHIFYNH-GINVQGFG-GDTMHLARLADPSRGPKEYSLANVTK 210 Query: 118 FSEHLTKME 126 E K Sbjct: 211 HYEEEIKYL 219 >gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus] Length = 1219 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 91/637 (14%), Positives = 142/637 (22%), Gaps = 142/637 (22%) Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T V A A AL F +G+ A Sbjct: 655 VSGLFDTRVAAWMTDTGK----ADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAI 710 Query: 150 ANHVQAWQ---LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 V + + A E K L E + + G + V Sbjct: 711 VAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERV 770 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV-----DMSEGTL 261 + + + + L VK G + + LF + + T Sbjct: 771 TRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHASTS 830 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG---------------RLR 306 +L IL + ++ L+E R+ Sbjct: 831 AEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERALGAAAAESAVPASQGAGAARIH 890 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T A RTGR S Q +P+ G+ VR Sbjct: 891 ATWNQTSA-RTGRLSCSRPNLQQMPKGSDP-------------------LAGVEGVNVRD 930 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK------------AFANGEDIYVTTYA 414 A+ L+ AD + IE RVLA + A G D+Y A Sbjct: 931 AFSATRSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAA 990 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + F VS E+R KV+ L + Y G L++ + S + Sbjct: 991 QVFAKEEHGVSDEERNRAKVVCLGITYGMGTPQ-----VAKKLEITESQAQGLVRSFLKA 1045 Query: 475 WEQAESHHLWM-------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + E + E L G L + Sbjct: 1046 FPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEIN--------NSRN 1097 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 +V+ RRL Sbjct: 1098 AAAKAQAERQAVNSVVQGTAADIMKTAMVLVA------------RRLD------------ 1133 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP--DT 639 R G ++ + +HDE+V E P + Sbjct: 1134 -----AWRSSLDEGLDCPRLI-----------------------MQIHDELVLECPACEE 1165 Query: 640 PYFSVG-TLCSLMTKNPSWAKGL--PLKAEGYEAKRY 673 + L M G+ PL + Sbjct: 1166 DLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSW 1202 >gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] Length = 222 Score = 167 bits (422), Expect = 6e-39, Method: Composition-based stats. Identities = 71/266 (26%), Positives = 98/266 (36%), Gaps = 59/266 (22%) Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ R GK+ ELALGY G K+M Sbjct: 6 VEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------------------- 39 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 A++ + + + AWR + + +LW D+ V++ Sbjct: 40 --------------ALEMGIEEEELQPLVTAWRQSNSNITKLWWDVDRAVKVCVKQKTPT 85 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------ATSQLMR 589 + + IVLPS RRL Y + + T + R Sbjct: 86 ET------HGIKFIYQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGTKKWER 139 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +YG K ENIV AISRDIL M+ IV VHDEI+ E S +C Sbjct: 140 IESYGPKFVENIVHAISRDILYHAMQTL--KNCSIVAHVHDEIIIEA--DMRMSFSAICE 195 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 M + PSWA GL L A+GYE + Y+K Sbjct: 196 QMARTPSWANGLLLSADGYECQFYQK 221 >gi|291335358|gb|ADD94973.1| DNA polymerase I putative [uncultured phage MedDCM-OCT-S04-C148] Length = 640 Score = 167 bits (422), Expect = 7e-39, Method: Composition-based stats. Identities = 106/745 (14%), Positives = 191/745 (25%), Gaps = 204/745 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRTEQSAMP-SDLLQYL 61 L D ET QP E+ + L A D + + L D + +DL + Sbjct: 21 LCFDTETLQLQP----------ERGKLRLLQLGARDRDTIVLIDCFQLDKGDWADLRWFF 70 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN-----GLPSSLKNACLA 115 +AHN++F+ ++ +I W C+ + +R L + Sbjct: 71 STPDRFWLAHNAVFDLGWLQEH---NIYPAGWVRCSMLASRLLTNGLPNSKHGLDSVVKR 127 Query: 116 LNFSEHLTK----MEEG---KALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRD 166 E + G + + D + + R Sbjct: 128 YLKKELSKEQQRSDWSGDLSEEQLEYAANDVAALMELDPILEHRISRDRLGPAFKLECRA 187 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL---------QELIAQER 217 + A ++++ +P + +D + + D ++L +E Q Sbjct: 188 LPAMAQMWRTGLPWNAENLQQRKVDYEYDITQLKQDFLMLLDKALPEEHKLPRERDEQRI 247 Query: 218 KKLDEDIVKLTDGII-------------------------------------RSSRQTYA 240 L + + ++ + Sbjct: 248 SYLKDKVTEMGHYDKAYEKWYAELESLENSTTFNTRSKDEGSIRLGTKKYAGFNINSPKQ 307 Query: 241 LRMYLFLITGIDLVD---MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L L +I G D + +++ S++ ++ + + + + ++ E Sbjct: 308 LVEKLTVILGEPPRDANGKPSASRQALRSYAADHEVIQIYLEWKRCEKRRQ--MIESIQE 365 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + G +R + GA GR S Q +PR Sbjct: 366 KMDGTGFVRASYMQLGAES-GRMSCIKPNNQQIPRD------------------------ 400 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 RSC+ A G LV AD +E R+ A +A ++ I AF GED + T Sbjct: 401 ----KQFRSCVEAPEGWLLVDADFGQMELRLAAAVADDERMIAAFQAGEDPHTVTAKAI- 455 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 R K L Y GA + A G+ Sbjct: 456 --------GCDRQTAKSANFGLLYGSGATGLRNYAGGMGI-------------------- 487 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + ++ W QGV + +D + Sbjct: 488 -------------------TMTQERAADIRNEWLGVFQGVAKWQRD---NAKEADETQDY 525 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 A + S R + Sbjct: 526 KWAATRVPI-----------------SGMRRYLQGDMNRLTVR----------------- 551 Query: 598 TENIVQAISRDILCEGM----KNATKNG---YDIVLTVHDEIVSETPDTPY-FSVGTLCS 649 +Q IL + + G I VHDEI+ + TL Sbjct: 552 CNTPIQGAGAAILKCALGNLWPKVKEAGEDTVRIAAAVHDEILLLVRENAAQEWAATLKQ 611 Query: 650 LMTKNP-SWAKGLPLKAEGYEAKRY 673 +M W +P AE K + Sbjct: 612 VMEDAEAKWLGEIPALAEVSVGKTW 636 >gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 55/383 (14%), Positives = 104/383 (27%), Gaps = 88/383 (22%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 +GR+ +L + TGR S QN P E+ Sbjct: 845 GENGRIHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 881 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A+ G L+VAD +E R+LA +A + AF G D + T + Sbjct: 882 ---KIRQAFVAAQGNSLIVADYGQLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTH 938 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + V + G + + + + Sbjct: 939 IREAVENGEV------------------LLEWHPQPGEEKPPVPLLKDAFGSERRKAKML 980 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + A K+ + W + + V + Sbjct: 981 NFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDRKEVSDWQEQRKFEARE--------- 1031 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + R + VK + + + R Sbjct: 1032 -----------------FRRVHTLLGRARWFPSVK---NATGSVKGHIERAAI------N 1065 Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMT 652 VQ + D+ M + G+ ++L VHDE++ E P+ ++ + M+ Sbjct: 1066 TPVQGSAADVAMCAMLEISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMS 1125 Query: 653 KNP--SWAKGLPLKAEGYEAKRY 673 K + L + AK + Sbjct: 1126 KPFGGKNILRVDLSVDSKCAKNW 1148 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 33/346 (9%), Positives = 83/346 (23%), Gaps = 76/346 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQ--SAMPS 55 D E + + + + I + + D +W D + + Sbjct: 388 ACDTE-VAKIDVKQQTP---VDHGDIICFSIYSGPEADFGDGKSCIWVDVLDGGGKNLLV 443 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + +D ++ V HN F+ + + + T +AR S Sbjct: 444 EFAPFFQDPSIRKVWHNYSFDNHVIENY---GFKVSGFHADTMHMARLWDSSRRTSGGYS 500 Query: 109 LKNA--------------CLALNFSE-----HLTKMEEGKALIARFCKGSIDSPP----- 144 L+ L E K G+ + + + Sbjct: 501 LEALTGDSTVMRDARPVHAERLFHGEGLFGKISMKTIFGRKKLKKDGTEGKVTVIPSVEE 560 Query: 145 ------YDCTRANHVQAWQLFGEYCKRDVEATRELFK-------RLIPLSDGERDLW-LL 190 + + + Y + ++ ++ + + + L Sbjct: 561 LQKTERELWICYSALDSISTLMLYESLKNKLSKRIWTFDGVRKGSMYEFYERYWRPFGEL 620 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYL 245 + G +D + +++++ E++ D + LR Sbjct: 621 LVQMETEGVLVDRAYLAEIEKVAKAEQQVAANRFRNWAAKYCPDAKYMNVGSDTQLRQLF 680 Query: 246 F----------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 F + K I + + L+R Sbjct: 681 FGGIQNRKNSDESLPYEKEFKVPNVDKGIEEGKKAPTKFRKIRLHR 726 >gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans] gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans] Length = 967 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 91/666 (13%), Positives = 181/666 (27%), Gaps = 122/666 (18%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM----------PSDLLQYLRDETVMCVA 70 ++ + + I+ ++ D W+ +L + + + V Sbjct: 387 LFQVDDSSFISCVSFCRADNVAFYWNMQIDDRAACQGVPTPLKVQELCNLMARKDLTLVM 446 Query: 71 HNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTK 124 H+ + + +K I + + V + N C Sbjct: 447 HDGKEQLKMLRKAIPQLQKISVKLE---DAKVANWLLQPDKTVNFLNMCQTFAPECTGLA 503 Query: 125 MEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 G + + S P T + + L D Sbjct: 504 NLCGSGRGYSSYGLDTSSAILPRIRTAIESCVTLHILKGQTENLGRI--GEGNLLKFFHD 561 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + L + G+ + +L + + KKL+ I + G + + A+ Sbjct: 562 IEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQH-GSRFNLGSSQAVA 620 Query: 243 MYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 L G+ T + +L N LIL S + L E + Sbjct: 621 KVL----GLHRKARGRVTTSRQVLEKLNSP--ISHLILGYRKLSCLLAKSIQPLMECCQA 674 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ G Y A TGR S QN+ ++ I + Sbjct: 675 D-RIHGQSITYTA--TGRISMTEPNLQNVAKE-----------------FCIQVGSDAVN 714 Query: 362 DCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 RS + + L+ AD +E R+LA ++ + ++ + +D+++ A Sbjct: 715 ISCRSPFMPTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIK 774 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 +V+ + R K + + Y G + L+ + + S E ++ Sbjct: 775 ESEVTPDLRNSTKQVCYGIVYGMGMRSLAE-----SLNCSEQEARIISDQFHEAYKGIRD 829 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + + + G L + L + V SA Sbjct: 830 YTRRVVNFARGKGFVETITGRRRYLEMTN---------SDMEHLKKAERQAVNSTIQGSA 880 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 +A L M ++ L Sbjct: 881 ADIAKNAILKMEKNIERYREKLALG----------------------------------- 905 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAK 659 D+V+ +HDE++ E P + + S+ M Sbjct: 906 ------------------DKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITMESCVK--L 945 Query: 660 GLPLKA 665 +PLK Sbjct: 946 SVPLKV 951 >gi|255088559|ref|XP_002506202.1| predicted protein [Micromonas sp. RCC299] gi|226521473|gb|ACO67460.1| predicted protein [Micromonas sp. RCC299] Length = 972 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 86/727 (11%), Positives = 176/727 (24%), Gaps = 133/727 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLK 110 Y V V HN F+R + + G+ + T +AR SL+ Sbjct: 265 FKPYFESPDVKKVWHNYGFDRHVIENH-GVKLAGFA-ADTMHMARLWNSNRKLEGGYSLE 322 Query: 111 NAC-----------------LALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANH 152 L S+ K GKA + + P Sbjct: 323 ALSSDPKVMSDAGEMYSEAGEELIRSKRGMKKIFGKAKLKKDGTPGKTVILPPIDEIQTD 382 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSD--------------------GERDLW---- 188 + + + EY D +AT L + L D + Sbjct: 383 PEQRETWIEYSALDAQATWFLRESLEAKLRGIDCEACPVLSKKPTFRRCSNLWDFYVHYL 442 Query: 189 ----LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTY 239 + + G +D + ++ +++K ++ G + Sbjct: 443 REFGEVLTDMESNGMYVDKAHLADAEKRALEDKKVAEDYFRAWATGKCPAAEHMNVGSGI 502 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 +R LF G + ++ + +++ + N K E Sbjct: 503 QVRQLLFA--GAPNKRRDKPGVEKTREFAMVSKEWTEWDENGREGKA---PKKAAKFELH 557 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 R + + TG + + L + + L AL + + Sbjct: 558 GITKRNLQPPVY---TTTGLPAVSSVVLRALAGKPGAARELVDNWDALADDQKKDE---A 611 Query: 360 ASDCVRSCIIASNG-------KKLVVA--DLAGIEARVLAWIA--GEDWKIKAFANGEDI 408 + S +A G + A D+A I+ + +I D Sbjct: 612 LAKKCGSAFLAFGGGFDGVEACAAIDALNDVAAIDTLLSNFIIPLQSDNLRGFNGRVHAA 671 Query: 409 YVTTYAKAFN------------TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 D+ + + + + G + +A G Sbjct: 672 LNINTETGRLSARRPSLQNQPALEKDRYGIRKAFSAEPGNILIVADYGQLELRLLAHMAG 731 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP---------------EFAVKDKLIGT 501 + + +Q + A+ + + Sbjct: 732 CVSMREAFEAGGDFHSRTAMGMYKEIREAMEQGKCLLEYGDIDDDAGGEKPALVKDMFAS 791 Query: 502 ACEL-----VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 A+ G+ + + T V S V + ++ Sbjct: 792 ERRKAKVLNFSIAYGKTAHGLAKDFGVSTREAEETVDLWYS-DRPEVREWQAVQHKKAAE 850 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + R + + +Q + DI M Sbjct: 851 KGKVNTLLGRHRNLPEASSSDEMRRGHALRAS---------INTPIQGGAADIAMLAMIQ 901 Query: 617 ATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNP---SWAKGLPLKAE 666 + G+ +++ +HDE++ E P+ L L M K + L + Sbjct: 902 IHRCPRLRELGFKLLMQIHDEVILEGPEEHRDEALALVKLHMEKPFNDHENLCDVELSVD 961 Query: 667 GYEAKRY 673 G AK + Sbjct: 962 GDYAKTW 968 >gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] Length = 1044 Score = 166 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 105/386 (27%), Gaps = 90/386 (23%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 736 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 775 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R IAS G L+VAD +E R+LA +A +AF G D + T Sbjct: 776 ------KIRQAFIASPGNSLIVADYGQLELRILAHLASCKSMKEAFIAGGDFHSRTAMNM 829 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V + G + + ++ Sbjct: 830 YPHIREAVENGEV------------------LLEWHPQPGQEKPPVPLLKDAFASERRKA 871 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W Q V + + + Sbjct: 872 KMLNFSIAYGKTAIGLSRDWKVSIEEAQDTVNLWYNDRQEVRKWQELRKKEAIQNGYVLT 931 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R V R +++ + R Sbjct: 932 LLGRARKFPVYRSRAQKN-------------------------------HIERAAI---- 956 Query: 597 LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M + G+ ++L +HDE++ E P + + + Sbjct: 957 --NTPVQGSAADVAMCAMLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENAKDIVVN 1014 Query: 650 LMTKNP--SWAKGLPLKAEGYEAKRY 673 M++ + L + A+ + Sbjct: 1015 CMSEPFNGKNILSVDLSVDAKCAQNW 1040 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 66/299 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E S + + + + + D +W D + + Sbjct: 280 ACDTE-VSRIDVKTETP---VDHGEMICFSIYCGSEADFGDGKSCIWVDVLGENGRDILA 335 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + D ++ V HN F+ + + I + T +AR S Sbjct: 336 EFKPFFEDSSIKKVWHNYSFDNHIIRNY---GIKLSGFHGDTMHMARLWDSSRRISGGYS 392 Query: 109 LKNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 L+ L F + K GK + + + ++ Sbjct: 393 LEALTSDPRVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVIIP-PVKELQMED 451 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQT 193 + + Y D +T +L++ + D ++ W L Sbjct: 452 REAWISYSALDSISTLKLYESMKKQLQAKKWFLDGNLISKQNMFDFYQEYWQPFGELLAK 511 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLD------EDIVKLTDGIIRSSRQTYALRMYLF 246 + G +D D + + E++A+ +++ D + LR F Sbjct: 512 MESEGMLVDRDYLAQ-IEIVAKAEQEIAVSRFRSWASKHCPDAKHMNVGSDTQLRQLFF 569 >gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208] Length = 240 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 89/317 (28%), Gaps = 89/317 (28%) Query: 365 RSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R + G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D+ Sbjct: 1 RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V R K + G+ SQN+ Sbjct: 61 VDSLMRRQAKAVNF--------------GIVYGISDYGLSQNL----------------- 89 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + + + V + +D+ + RR Sbjct: 90 -------------GITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRY 136 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 + + + +NT +Q Sbjct: 137 IPEIVSRNFNVRG-----------------FAERTAMNT------------------PIQ 161 Query: 604 AISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 + DI+ + M K ++L VHDE++ E P+ + + +M Sbjct: 162 GSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE 221 Query: 657 WAKGLPLKAEGYEAKRY 673 +PLK + + Sbjct: 222 --LSVPLKVDSAFGDTW 236 >gi|145350384|ref|XP_001419587.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579819|gb|ABO97880.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 824 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 94/794 (11%), Positives = 184/794 (23%), Gaps = 154/794 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-------DEPVK----LWD-RTEQSA 52 D E V +T + + K D Sbjct: 56 ACDTE----VAYISVADQTPVGHGQVTCFSVYVGPDVNFAPEGESKRSLLWVDTLRGGDG 111 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-- 110 + +Y + V V HN F+R + + GI + T +AR L Sbjct: 112 VWEVFKEYFENANVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARLWNSNRKLDGG 170 Query: 111 --------------NACLALNFSEHL------TKMEEGKALIARFCKGSIDSP-PYDCTR 149 L + K GK + + P Sbjct: 171 YSLEALSSSADAMSECAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTMILPPIEEI 230 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE--------------------RDLW- 188 + + EY D +AT L + L G D + Sbjct: 231 QEARDSRDRWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFYT 290 Query: 189 -------LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI-----IRSSR 236 L + G +D + +++ ++++ ++ I + Sbjct: 291 FYLAEFGNLLTQMERNGLLVDKAHLAHAEKMAHEDKRVAEDYFRNWAASKCEGARIMNVG 350 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 +R LF G + ++ + + L Sbjct: 351 SGLQVRQLLFA--GAKNKRRDKPGVELTREFTQESSEWIAWDAAGREGKAPKKTMKVAL- 407 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 G +Q + TG + + L + + Sbjct: 408 -----HGITVKPIQVQTFTATGLPAVSSVVLRAL---AGKPGAARAIMDTWDSLADAEKT 459 Query: 357 LGLASDCVRSCIIA----SNGKKLVVA-----DLAGIEARVLAWIA---GEDWKIKAFAN 404 + + A G + A D+A I+ + +I G+D I+ Sbjct: 460 EDVLKKACGTAFEAFGGGKEGVQACAAIDALNDVAAIDTLLSNFIIPLQGDD--IRGPEG 517 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL--GYQGGAKVFKTMASHCGLDLQQF 462 + + + S + + + + + G +A + L+L+ Sbjct: 518 RVHGALNINTETGRLSARRPSLQNQPALEKDRYGIRKAFTAGPGNILVVADYGQLELRLL 577 Query: 463 SQNVKSTSTFEDWEQAESH-------HLWMQDQYPEFAVK--------DKLIGTACELVK 507 + S E +E + + + + + Sbjct: 578 AHMADCKSMQEAFEAGGDFHSRTALGMYSNIKEAIDKGEVVLEYGEQEETVDEKDRPALV 637 Query: 508 KAWRAKHQG------------------VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 K A + L E V R + Sbjct: 638 KDVFASERRKAKVLNFSIAYGKTAHGLAKDWGTSLEEAANTVELWYADRPEVREWQEVQK 697 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 M K V +L R D + + +Q + DI Sbjct: 698 KMAVEKNLVRTLL--GRVRNLPDASSKNEAFKSHALRAS---------INTPIQGGAADI 746 Query: 610 LCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW---AK 659 M + GY +++ +HDE++ E P+ L M Sbjct: 747 AMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKYHMENPFPGHVNLL 806 Query: 660 GLPLKAEGYEAKRY 673 + L +G AK + Sbjct: 807 NVALAVDGDYAKTW 820 >gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis] gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis] Length = 963 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 59/406 (14%), Positives = 106/406 (26%), Gaps = 85/406 (20%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 + S+ L S + + L + S R R + Sbjct: 610 TALKAFPSLEEGIEACHAIASLCEVCSIDSLISN-FILPLQGSNVSGKRGRVHCSLNINT 668 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN P E+ +R IA+ G Sbjct: 669 ETGRLSARRPNLQNQPALEKDRY------------------------KIRQAFIAAPGNS 704 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+VAD +E R+LA +A ++AF G D + T + + V K + Sbjct: 705 LIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHEAVDKGEV------ 758 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 G + + + + + + A Sbjct: 759 ------------LLEWDPQPGEEKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARD 806 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ + W + Q VL+ + + + + Sbjct: 807 WKVSIEEAKETVNLWYRERQEVLKWQEARKKEAREDGRVHTLL----------------- 849 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R V+ + N + R VQ + D+ M Sbjct: 850 ---------GRARVFPSI---SHASNAQKRHIERAAI------NTPVQGSAADVAMCAML 891 Query: 616 ------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + G+ ++L +HDE++ E P + M+K Sbjct: 892 QISRNKRLKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKP 937 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 36/329 (10%), Positives = 87/329 (26%), Gaps = 65/329 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS--AMPS 55 D E + + + I + + + +W D + + Sbjct: 208 ACDTE-VAKIDVKQETP---VGHGEIICFSIYSGPEADFGNGTSCIWVDVLDGGGRDLLV 263 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + + V HN F++ + + ++P + T +AR S Sbjct: 264 KFKPFFENPEIKKVWHNYSFDKHVIQNY---EVPVCGFHADTMHMARLWNSSRRTEGGYS 320 Query: 109 LKNA------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 L+ C + K GK + + + Sbjct: 321 LEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGK-MITVAPVEELQREER 379 Query: 157 QLFGEYCKRDVEATRELFKRLIP-----------------LSDGERDLW----LLDQTIN 195 + + Y D +T +L++ L + D ++ W L + Sbjct: 380 EPWICYSALDAISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWRPFGELLVRME 439 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLITG 250 G +D + +++++ E++ + LR F G Sbjct: 440 TEGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQLRQLFF--GG 497 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLIL 279 I ++ + + + K + Sbjct: 498 IAN-SKDPDSILPVEKKIKVPNVDKVIEE 525 >gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group] Length = 1986 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 94/720 (13%), Positives = 178/720 (24%), Gaps = 225/720 (31%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------ 55 S+ D+ + + + I A W++ PV + + M Sbjct: 1386 SEFSFDLH-YVKKSIKSSSTY-----FDILGLAVCWENSPVYYCNFPKDLMMAGSNDSIE 1439 Query: 56 ----------DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +++ +R +V + N F+ K C Sbjct: 1440 MWDELTRRWNRVIEIMRQNSVKKMTWNLKFQIQALKY--------PCVSC---------Q 1482 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 S L+ + K E + F + D W Sbjct: 1483 RLS------RLHLDYKMLKNVEVLDNLYVFLQPVSVHSGLDICLVAW-VLWPDEESKTVP 1535 Query: 166 DVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 ++E TR L L L E L + + G D+D L+ + +I + Sbjct: 1536 NLEKTRALCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIR 1595 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM------SEGTLKSILSHSN 269 + K+L+++ KL G S T + L+ + + T K L H Sbjct: 1596 KLKELEKEAYKLA-GKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR 1654 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY--------GASRTGRWS 321 +I + LN ++ S +L Q Y ++ TGR S Sbjct: 1655 DQHPIISVIKEHRTLAKL----LNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLS 1710 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 Q LV AD Sbjct: 1711 MEEPNLQ-------------------------------------------ENWLLVTADY 1727 Query: 382 AGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A + + I+ + + D++ ++ + ++R K + Sbjct: 1728 SQIELRLMAHFSKDTALIELLSKPDGDVFTMIASRWTGKAESLICSKERETTKRFIYGIL 1787 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 G+ A + + Sbjct: 1788 --------------YGMG------------------------------ANSLAEQLECSP 1803 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 ++++ GV + + Sbjct: 1804 EDAAQKIQSFKRFFPGVSSWLHEAVASCRHKGYVETLM---------------------- 1841 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-- 618 RR S + S ++ R+ +I Q + DI+ M Sbjct: 1842 ----GRRRFLSKITAGNSKEK---AKAQRQA------VNSICQGSAADIIKVAMIKVHSA 1888 Query: 619 ------------------------KNGYDIVLTVHDEIVSETPD-TPYFSVGTLCSLMTK 653 + ++L VHDE+V E +V L ++M Sbjct: 1889 ITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLLQTVMEN 1948 >gi|40253294|dbj|BAD05229.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|40253611|dbj|BAD05556.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] Length = 1035 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 103/399 (25%), Gaps = 90/399 (22%) Query: 286 GSAILKLNTLS--EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L +GR+ +L + TGR S QN P E+ Sbjct: 712 KLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQPALEKDRY----- 764 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A+ G L+VAD +E R+LA + ++AF Sbjct: 765 -------------------KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFK 805 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D + T + D V + KV G D Sbjct: 806 AGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQPGQDKPPVP 847 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + + + + K W + + K Sbjct: 848 LLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEISAWQKK 907 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + R + ++ Sbjct: 908 QKALAFEKCEVYTLL--------------------------GRSRQFPNM---THAGPGQ 938 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637 S + R VQ + D+ M + G+ ++L VHDE++ E P Sbjct: 939 KSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGP 992 Query: 638 DTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 + M+K + + L + AK + Sbjct: 993 TESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 1031 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 39/309 (12%), Positives = 85/309 (27%), Gaps = 66/309 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392 Query: 107 SSLKNACLALNFSEHLTKM--EEGK-ALIARFCKG-------SIDSPPYDCTRANHVQAW 156 SL+ + K + GK ++ F + + + + + Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIND 196 +L+ Y D +T +L++ L + E + W L + Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF----- 246 G +D + ++++ ERK + K D + +R F Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFFGGIKN 572 Query: 247 -LITGIDLV 254 G Sbjct: 573 RNKPGETWP 581 >gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 261 Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 85/362 (23%), Gaps = 112/362 (30%) Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R C I K Sbjct: 1 RLSSSDPNLQNIP------------------------VRDDDGKEIRKCFIPEPSCKFFS 36 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ ++ ++AF G DI+ T +K + +D+V+ QR K Sbjct: 37 ADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDEVTDSQRKQAKQAN-- 94 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 G+ A + + Sbjct: 95 ------------FGIIYGI------------------------------TTYGLAQRMGI 112 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + V + + E Sbjct: 113 DNGEARQLIDDYFTTFPKVKEYMEKAKEIARERGYAETLF-------------------- 152 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 RR D+ T R +Q DI+ M Sbjct: 153 ------GRRRYLPDINSKN---GTVRGFAERNAINAP------IQGSEADIIKLAMIRIW 197 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAK 671 K ++L VHDE+ V + M +PL AE Sbjct: 198 KRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGAYP--LHVPLIAEAGWGD 255 Query: 672 RY 673 + Sbjct: 256 NW 257 >gi|228904297|ref|ZP_04068392.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|228930754|ref|ZP_04093731.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828844|gb|EEM74504.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855382|gb|EEM99946.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 1097 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 88/715 (12%), Positives = 186/715 (26%), Gaps = 181/715 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------- 52 L +D ET K E + + Sbjct: 210 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 266 Query: 53 --MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-SVLARTNGLPS-- 107 M + + L + ++ HN+ F+ + GI + I T +V + T Sbjct: 267 YFMETYMKPLLEKKDIIV--HNASFDWKVI-YIYGIVLNV--VIDTFAVFSLTLNAKYQT 321 Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 LK+ L ++ + + +L Y Sbjct: 322 PVGLKHLISLL-LKRDSLEL----------DDLCKNGDFGSIDQNFADLPKELVRLYACA 370 Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L+ ++ + E G ++++ +L + I Sbjct: 371 DADNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDID 430 Query: 215 QERKKLDEDIVK-----LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 ++ ++ + + D + + ++ + G Sbjct: 431 RDLQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAP----------------- 473 Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 K L LS+ + D + Y + Sbjct: 474 ---------EQYKLDGKLTADKKALKNLSKMTNPDDTPKYPFVNYFQEFNEVNTLRKNFS 524 Query: 328 QNLPRQERSEEILTQTIQ---ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 +NLP + + ++ R +D V+ I G + D + I Sbjct: 525 KNLPEFCTPDGFMFSGVKQFLKTGRVSISKPNYQSYNDTVKKYIKPRPGFWMGDMDYSSI 584 Query: 385 EARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 E RV+A ++ + I+AF + D + + + P + VSK R K + + Sbjct: 585 EYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFGIPFGM 644 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G + G+ + F K Sbjct: 645 GNEKL-------GMTI--------------------------------FGKVSKENTRKA 665 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 +++ + V + + V+ G + + Sbjct: 666 TALRERYFKGQDNVREFF---VNAQRDAVKYGYTETH----------------------- 699 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATK 619 RR Y+ + + + + Q +R +Q + DI + + Sbjct: 700 FGRRRYYNK---ETTSVGSIKRQGGNQR----------IQGTAADIYKQAVVRLFLRIIN 746 Query: 620 NGY--DIVL--TVHDEIVSETPDT--PYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668 G+ ++L +HDE++ E P + L M LK +G+ Sbjct: 747 EGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKVDGF 791 >gi|222640002|gb|EEE68134.1| hypothetical protein OsJ_26228 [Oryza sativa Japonica Group] Length = 982 Score = 164 bits (414), Expect = 5e-38, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 103/399 (25%), Gaps = 90/399 (22%) Query: 286 GSAILKLNTLS--EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L +GR+ +L + TGR S QN P E+ Sbjct: 659 KLISGFIVPLQGDHISCKEGRIHCSLNIN--TETGRLSARTPSLQNQPALEKDRY----- 711 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A+ G L+VAD +E R+LA + ++AF Sbjct: 712 -------------------KIRQAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFK 752 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D + T + D V + KV G D Sbjct: 753 AGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQPGQDKPPVP 794 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + + + + K W + + K Sbjct: 795 LLKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEISAWQKK 854 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + R + ++ Sbjct: 855 QKALAFEKCEVYTLL--------------------------GRSRQFPNM---THAGPGQ 885 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETP 637 S + R VQ + D+ M + G+ ++L VHDE++ E P Sbjct: 886 KSHVERAAINAP------VQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGP 939 Query: 638 DTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 + M+K + + L + AK + Sbjct: 940 TESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYAKSW 978 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 60/295 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 227 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 282 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 283 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 339 Query: 107 SSLKNACLALNFSEHLTKM--EEGK-ALIARFCKG-------SIDSPPYDCTRANHVQAW 156 SL+ + K + GK ++ F + + + + + Sbjct: 340 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 399 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIND 196 +L+ Y D +T +L++ L + E + W L + Sbjct: 400 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 459 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 G +D + ++++ ERK + K D + +R F Sbjct: 460 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 514 >gi|168060384|ref|XP_001782176.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666342|gb|EDQ52999.1| predicted protein [Physcomitrella patens subsp. patens] Length = 808 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 62/382 (16%), Positives = 105/382 (27%), Gaps = 90/382 (23%) Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGR+ +L + TGR S QN P E+ Sbjct: 504 SDGRVHCSLNIN--TETGRLSARRPSLQNQPALEKDRY---------------------- 539 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R +A+ GK LVVAD +E R+LA +A AF G D + T + Sbjct: 540 --KIRQAFVAAPGKALVVADYGQLELRLLAHLADCKSMKAAFIAGGDFHSRTAMNMYPHV 597 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V K+ + + GL+ + + + Sbjct: 598 REAVEKD---------------------RVLLEWEGLEKPPVPLLKDMFGSERRKAKMLN 636 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + A + + W + VL K+ + Sbjct: 637 FSIAYGKTAMGLAKDWNVKLDEAKATVDLWYSDRPEVLAWQKERKQEAHE---------- 686 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + + R D+ S L + R Sbjct: 687 ----------------TLRVHTLLGRARHLPDINSSNSLLRSHM---ERAAINTP----- 722 Query: 601 IVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTK 653 + Q + D+ M + G+ ++L VHDE++ E P L M Sbjct: 723 VQQGSAADVAMCAMLEINQNARLRELGWKLLLQVHDEVILEGPLESAEEAKELVIKSMMY 782 Query: 654 NP--SWAKGLPLKAEGYEAKRY 673 + L +G A+ + Sbjct: 783 PFNGENILDVELVVDGDYAENW 804 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 78/302 (25%), Gaps = 67/302 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVKLWDRTEQSAMPSD 56 D E + + K IT + + + + + + Sbjct: 41 ACDTE-VAGIDVKKESP---VGHGQITCFSIYCGPGADFGYGKNRLWVDVLDGGDDVLRV 96 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------PSSL 109 +Y D ++ V HN F++ + + GI P + T LAR N +L Sbjct: 97 FKRYFEDPSIQKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLNDSARRGSKGGYAL 154 Query: 110 KNACLALN-----------------FSEHLTKMEEGKALIARFCKGSI-DSPPYDCTRAN 151 + + K GKA + + P Sbjct: 155 EVLSADRKVMDYCSKNFTEEDGSVFVGKKSMKELFGKAKLKKDGTPGKIKVVPPVDELQR 214 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL--------------------IPLSDGERDLW-LL 190 + + Y D T LF L + + + Sbjct: 215 DEELRDAWIHYSTLDAVCTWRLFVSLQHKLSNTPWSVAELRHKGSMYDFYEKYWRPFGEV 274 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKL------DEDIVKLTDGIIRSSRQTYALRMY 244 + G +D D + E +A+ ++K+ + + +R + Sbjct: 275 LVQMEAYGMLVDYDHL-ATVEKLARAQQKISVSRFRKWAARYCPNAARMNVGSDAQIRQF 333 Query: 245 LF 246 LF Sbjct: 334 LF 335 >gi|75759443|ref|ZP_00739536.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493056|gb|EAO56179.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1015 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 88/715 (12%), Positives = 186/715 (26%), Gaps = 181/715 (25%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------- 52 L +D ET K E + + Sbjct: 128 KVLAVDTETTGLDITFKSRTG---EHDECVGLIITGKEGESFYFPFKHTQFDNLCGGDDW 184 Query: 53 --MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT-SVLARTNGLPS-- 107 M + + L + ++ HN+ F+ + GI + I T +V + T Sbjct: 185 YFMETYMKPLLEKKDIIV--HNASFDWKVI-YIYGIVLNV--VIDTFAVFSLTLNAKYQT 239 Query: 108 --SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 LK+ L ++ + + +L Y Sbjct: 240 PVGLKHLISLL-LKRDSLEL----------DDLCKNGDFGSIDQNFADLPKELVRLYACA 288 Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L+ ++ + E G ++++ +L + I Sbjct: 289 DADNTLALYHYMLETNMLENWGATKVVQFESIFACAIGYSEFHGQFVNVNETDQLVQDID 348 Query: 215 QERKKLDEDIVK-----LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 ++ ++ + + D + + ++ + G Sbjct: 349 RDLQEAERKMRNELRKVNYDADNFNPQSNVEKLKIIYEVFGAP----------------- 391 Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 K L LS+ + D + Y + Sbjct: 392 ---------EQYKLDGKLTADKKALKNLSKMTNPDDTPKYPFVNYFQEFNEVNTLRKNFS 442 Query: 328 QNLPRQERSEEILTQTIQ---ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 +NLP + + ++ R +D V+ I G + D + I Sbjct: 443 KNLPEFCTPDGFMFSGVKQFLKTGRVSISKPNYQSYNDTVKKYIKPRPGFWMGDMDYSSI 502 Query: 385 EARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 E RV+A ++ + I+AF + D + + + P + VSK R K + + Sbjct: 503 EYRVIASMSKQLSLIEAFQDPNTDYHKLQASNMYQIPYELVSKAMRGEAKAFNFGIPFGM 562 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G + G+ + F K Sbjct: 563 GNEKL-------GMTI--------------------------------FGKVSKENTRKA 583 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 +++ + V + + V+ G + + Sbjct: 584 TALRERYFKGQDNVREFF---VNAQRDAVKYGYTETH----------------------- 617 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK----NATK 619 RR Y+ + + + + Q +R +Q + DI + + Sbjct: 618 FGRRRYYNK---ETTSVGSIKRQGGNQR----------IQGTAADIYKQAVVRLFLRIIN 664 Query: 620 NGY--DIVL--TVHDEIVSETPDT--PYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668 G+ ++L +HDE++ E P + L M LK +G+ Sbjct: 665 EGWLDKVLLPGFIHDELLMEVSMEIHPLDWMKVLKEEME----------LKVDGF 709 >gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum] Length = 1855 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 54/387 (13%), Positives = 97/387 (25%), Gaps = 93/387 (24%) Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L S+ RL ++ + TGR S QN P E+ Sbjct: 1540 LISSFIIPLQRLADSNHRLHTSVNVN--TETGRLSSRRPNLQNQPALEKDRY-------- 1589 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R G LVVAD +E R+L I + AF G Sbjct: 1590 ----------------KIRKAFTCEPGNTLVVADYGQLELRLLGHITNCKSMLDAFRVGG 1633 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D + T + RA E+ L + G Sbjct: 1634 DFHSRTAMGMY--------PHVRAAVDAGEVLLEWD-------------GEGAPPKPLLK 1672 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 ++ + + + + + + + W VL + + Sbjct: 1673 DKFASERRKAKTLNFSIAYGKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLLWQRSTIQ 1732 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + R + D+ + Sbjct: 1733 IAHQKKWTRTLM--------------------------GRYRLLPDIDSKARGFVGHS-- 1764 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTP 640 R +Q + DI+ + M + GY +++ +HDE++ E P+ Sbjct: 1765 -ERASI------NTPLQGGAADIVMKAMLIIEQDARLKELGYRLIMQIHDELILEGPEEH 1817 Query: 641 YFSVGTLC-SLMTKNPSWAKGLPLKAE 666 + LM PL + Sbjct: 1818 APEARDIVIKLMGNP----LNKPLLVD 1840 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 46/281 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLWDR--TEQSAMPSD 56 D E + + I + + D + + Sbjct: 1142 ACDTE-VIDIDVKEQSP---IGHGKIICFSIYCGPDIDFGTGSRIWVDILGSNGDEILQI 1197 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLP------SSL 109 +Y DE++ V HN F+R +F +I + T ++AR SL Sbjct: 1198 FKEYFEDESIFKVWHNYAFDRHVFYNH---NIDVVGFGGDTMLMARLWDASRMMRGGYSL 1254 Query: 110 KNACLALNFSE-HLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDV 167 + L G+ + P + + EY RD Sbjct: 1255 EGLTKDLLDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSRDA 1314 Query: 168 EATRELFKRLIPLS---------DGERDLW--------LLDQTINDRGYRIDLDLVLKLQ 210 E T L + L D + L + RG ++DL+ + ++ Sbjct: 1315 EVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKGVE 1374 Query: 211 ELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 + ++ + +E+ + + + ++ +LF Sbjct: 1375 VIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLF 1415 >gi|308807921|ref|XP_003081271.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] gi|116059733|emb|CAL55440.1| polI-like DNA polymerase, putative (ISS) [Ostreococcus tauri] Length = 968 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 103/387 (26%), Gaps = 87/387 (22%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + +GR+ G L + TGR S QN P E+ Sbjct: 655 DIRGPEGRVHGALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 695 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R A G LVVAD +E R+LA +AG +AF G D + T Sbjct: 696 -------IRKAFTAGPGNVLVVADYGQLELRLLAHMAGCKSMQEAFEAGGDFHSRTALGM 748 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 ++ D ++K E+ L Y + + + + ++ Sbjct: 749 YSNIKDAIAK--------GEVVLEYGEQEEGVD--------EKDRPALVKDVFASERRKA 792 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + + W + V + + Sbjct: 793 KVLNFSIAYGKTAHGLSKDWGTSLEEAANTVELWYSDRPEVRDWQEVQKKMAVEKNLVRT 852 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R D + + Sbjct: 853 LL--------------------------GRVRNLPDASSKNEAFKSHALRAS-------- 878 Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649 +Q + DI M + GY +++ +HDE++ E P+ L Sbjct: 879 -INTPIQGGAADIAMLAMLQIQRCPRLKELGYKLLMQIHDEVILEGPEEHKDEALALTKY 937 Query: 650 LMTKNPSW---AKGLPLKAEGYEAKRY 673 M + L +G AK + Sbjct: 938 HMENPFPGHVNLLDVALAVDGDYAKTW 964 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 80/327 (24%), Gaps = 77/327 (23%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-------------RTEQS 51 D E V +T + + V Sbjct: 200 ACDTE----VAYIDVSDQTPVGHGQVTCFSV-FCGPDVNFAPEGESKRSLLWVDTLRGGE 254 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK- 110 + +Y + V V HN F+R + + GI + T +AR L Sbjct: 255 GVWEVFKEYFENPNVKKVWHNYSFDRHVVENHHGIKLAGFA-ADTMHMARLWNSNRGLDG 313 Query: 111 ---------------NACLALNFSEHLT------KMEEGKALIARFCKGSIDSP-PYDCT 148 + L + K GK + + P Sbjct: 314 GYSLEALSSSAEVMSDCAEMLGAGAEMMRAKRGMKKIFGKPKLKKDGTPGKTIILPPVEE 373 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE--------------------RDLW 188 V+ + EY D +AT L + L G D + Sbjct: 374 IQEDVEQRDKWIEYSALDAQATWFLRESLEAKLRGMSCEACPILASKPGYRKCVTLWDFY 433 Query: 189 --------LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----VKLTDGIIRSS 235 L + G +D + + +++ ++++ +E K + + Sbjct: 434 TFYLAEFGNLLTQMERNGLLVDKEHLANAEKMALEDKRVAEEYFRTWASAKCEGAKLMNV 493 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLK 262 +R LF G + ++ Sbjct: 494 GSGLQIRQLLFA--GAKNKRRDKPGVE 518 >gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group] Length = 1032 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 64/415 (15%), Positives = 110/415 (26%), Gaps = 89/415 (21%) Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 L S + L +S D GR+ +L + TGR S Sbjct: 693 EACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNL 750 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN P E+ +R +A+ G L+VAD +E R Sbjct: 751 QNQPALEKDRY------------------------KIRQAFVAAPGNSLIVADYGQLELR 786 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA +A + AF G D + T + D V + KV Sbjct: 787 ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKV 828 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G + + + + + A K+ + Sbjct: 829 LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 888 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 K W + VL E + + R Sbjct: 889 KLWYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRS 922 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621 + ++ S R VQ + D+ M + G Sbjct: 923 RRFPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELG 973 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 + ++L VHDE++ E P ++ M+K + + L + A+ + Sbjct: 974 WRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 1028 >gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa] gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa] Length = 834 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 107/383 (27%), Gaps = 88/383 (22%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ +L + TGR S QN P E+ Sbjct: 527 GKGGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY--------------------- 563 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA+ G L+VAD +E R+LA +A + AF G D + T + Sbjct: 564 ---KIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPH 620 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + + K+Q G + + ++ + Sbjct: 621 IREAIEKKQV------------------LLEWYPQPGENKPPVPLLKDAFASERRKAKML 662 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + + K+ + W + + VL+ + + + + Sbjct: 663 NFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEARENGRVYTLL- 721 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 R V+ + S L + R Sbjct: 722 -------------------------GRARVFPSLTDASSSLRGH---VERAAI------N 747 Query: 600 NIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 VQ + D+ M + G+ ++L VHDE++ E P + M+ Sbjct: 748 TPVQGSAADVAMCAMLEISKNTRLQELGWKLLLQVHDEVILEGPTESAEVAKAIVVGCMS 807 Query: 653 KNP--SWAKGLPLKAEGYEAKRY 673 K + L + A+ + Sbjct: 808 KPFGGKNFLNVDLAVDSKCAQNW 830 Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 38/343 (11%), Positives = 84/343 (24%), Gaps = 72/343 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-------PVKLWDRTEQS--AMPS 55 D E + + + + IT + E D + + + Sbjct: 71 ACDTE-VARIDVKEETP---IDHGEITCLSIYCGPEADFGHGKSCIWVDVLDGGGRDLLN 126 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + D + V HN F+ + + + T +AR S Sbjct: 127 EFALFFEDPDIKKVWHNYSFDNHVIENY---GFSVSGFHADTMHMARLWDSSRRLKGGYS 183 Query: 109 LKNA-------------CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 L+ L + K GK + + + Sbjct: 184 LEALTGDQKVMRGAGSCYKEL-IGKVSMKTIFGKKKLKKDGSEGK-MTIIAPVEELQREE 241 Query: 156 WQLFGEYCKRDVEATRELFKRL------------------IPLSDGERDLW----LLDQT 193 + + Y D +T +L+K + + D ++ W + Sbjct: 242 REPWICYSALDAISTLQLYKSMESELSKMPWNLDGKRVFQKSMFDFYQEYWQPFGEILVR 301 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLI 248 + G +D + +++++ E++ + LR LF Sbjct: 302 METEGMLVDRAYLAEVEKVAKAEQEVAANRFRNWACKYCPDAKYMNVGSDTQLRQLLF-- 359 Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 G+ TL + +I + Sbjct: 360 GGVPNSKDPLLTLPE--DKTFKVPNVDKVIE---EGKKTPTKY 397 >gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] Length = 808 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 94/748 (12%), Positives = 190/748 (25%), Gaps = 187/748 (25%) Query: 16 LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA---MPSDLLQYLR-DETVMCVAH 71 + V + A A ++ + ++ V A + L +YL +E V+ +A Sbjct: 143 ICTVSLSAAAHESRVVPISHKV--GQVFEPSMDRGEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACLA 115 N FE K + + ++ P LK A Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 257 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + K + F + A EY + Sbjct: 258 IFGVTMNDFAALLKKYKVDFFDEIDASKGEGLLYSAEDADYALQHYEYWSQIAAQIPRYE 317 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E + + G D +L + ++ +++ E I ++ Sbjct: 318 DWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 374 Query: 235 ------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269 S +T ++ +F I + L Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434 Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297 K+ L + LS Sbjct: 435 SISLPENWESIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 494 Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + GR+ + + TGR + QN+PR + E Sbjct: 495 HIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 541 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R+ + GK L D +G E R++AW +G++ I+ F G D++ Sbjct: 542 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMH 588 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468 T + ++ K++R K + Y G + T + + Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + +++ + + + E + G + G+ + Sbjct: 649 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 699 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + K + + + + Sbjct: 700 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 731 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645 +G S D++ +HDEI+ E D P V Sbjct: 732 GVLAHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVEK 765 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + P +P++AEG R+ Sbjct: 766 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 793 >gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500] Length = 1192 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 81/714 (11%), Positives = 175/714 (24%), Gaps = 145/714 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-PVKLWDRTEQSAMPSD--------- 56 D ET L + +W V + Sbjct: 540 DEETFFLPKL-----------FHVESIIVSWSPGLAVYQLPLAPSGGVADFKQSFYNDNW 588 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + Q L NS + + + GI + R I + + Sbjct: 589 KLVKQVLEYPYSYKHIWNSKPQLKILL-SKGISLK-HRLIDPKIALWLTDS-----DLHK 641 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +G K +I +I NH C + + ++ L Sbjct: 642 DKKLEYVYMDNAKGSKKMIGATKFHNISKLATRSGSTNHFDLAYQA---CYQTLILSQRL 698 Query: 174 FKRLIPL-----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 K+L P + E + + + G D ++ +EL+ ++ L L Sbjct: 699 LKQLDPSSLKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLLV 758 Query: 229 DGIIRSSRQTYALRMYL--FLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDLIL 279 + + + +L ++ LK L + ++++ Sbjct: 759 PRLKLDMESKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETISHEHPFPNILM 818 Query: 280 NRLASSGSAILKLNTLSEAV----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-- 333 S + L + + R+ T+ TGR + Q++ Sbjct: 819 EYRKLSHHINNYADELRKYCYRSTDNSMRIYSTILQTIVP-TGRLAMVFPNLQSIAHPIE 877 Query: 334 ---------------------ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 E L N + S +R + Sbjct: 878 FKVAPTFTPSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPKQ 937 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAI 431 G + AD + IE R+LA + + ++ F N D++ + P++++ R I Sbjct: 938 GYIFLSADYSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRTI 997 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + + Y G L+ + ++ + + D + Sbjct: 998 AKHLCYGILYGMGIGKL-----AHDLNTTKDKAKAALLRFKTTYQVLTDYLTSVGDSCLK 1052 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + G + + ++ ++ E + + Sbjct: 1053 NGFVETFFGR--KRYFREVFEVYKDTKVTN-EVKESAKRKAKNTIPQGTAADIS------ 1103 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 +L V + +I+ Sbjct: 1104 ---------------KLAMIQVDKKLNERGIP-----------------------AEIV- 1124 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664 DE++ E P++ V + M + +P+K Sbjct: 1125 ---LQVH-----------DELLLEVPESQLAEVALIVKESMESAAKLSIPIPIK 1164 >gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta] gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta] Length = 2037 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 91/653 (13%), Positives = 183/653 (28%), Gaps = 113/653 (17%) Query: 30 ITLCAYAWDDEPVKLWDR-----TEQSAMP-----SDLLQYLRDETVMCVAHNSLFERIL 79 I+ +++ D + +P +L + L + + V H+ + + Sbjct: 1465 ISGVSFSLADNVAYYMNMQNDGRATGQGVPTILKVQELCKLLARKDLTLVMHDGKEQLKM 1524 Query: 80 FKKTLG-IDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEG--KALIAR 134 K + + S + V S + C G + + Sbjct: 1525 LLKAIPQLQKISAKLEDPKVANWLLQPDRTMSFADMCRTFAPECTALADICGSGRGYSSY 1584 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + P T + + + L D E L L + Sbjct: 1585 GLDSASAILPKIRTSIEACVTVHILKGQTENLGRI--GSGQLLKFFHDLEMPLQLTLCHM 1642 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G+ L+ +L + + +KL+ I + G + + A+ L L I Sbjct: 1643 EFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQH-GSRFNLGSSQAVAKVLGLHRKI--- 1698 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T + +L N +IL +G + L + +D R+ G Y A Sbjct: 1699 NGRVTTSRQVLEKLNTP--ISHMILGYRKLAGLLAKSIQPLLKCCQAD-RIHGQSITYTA 1755 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR S QN+ E + A+N + L + Sbjct: 1756 --TGRISMAEPNLQNV----AKEFCIQVGSDAVNISCRLPFMLK------------DEDR 1797 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD +E R+LA ++ + +K + +D+++ A +VS+ R K Sbjct: 1798 CLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQNLRNSTKQ 1857 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y G + L+ + + S + + + + + Sbjct: 1858 VCYGIVYGMGMRSLAE-----SLNCSEEEARLISEQFHQAYTGIREYTMRVVKFARNQGF 1912 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRR 553 + + G L + + L + SA +A L M + Sbjct: 1913 VETITGRRRYLD---------NINSDQEHLKNQAERQAINSTIQGSAADIAKSAILKMEK 1963 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 + L Sbjct: 1964 NLERYRDKLGLG------------------------------------------------ 1975 Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 D+V+ +HDE++ E P + + S+ M +PL+ Sbjct: 1976 -----DKSVDLVMHLHDELIFEVPAAKSKKIAKVLSVTMQNCVK--LTVPLQV 2021 >gi|168066821|ref|XP_001785330.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663085|gb|EDQ49871.1| predicted protein [Physcomitrella patens subsp. patens] Length = 792 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 111/421 (26%), Gaps = 95/421 (22%) Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEA---VSSDGRLRGTLQFYGASRTGRWS 321 L L ++ + + L +SDGR+ +L + TGR S Sbjct: 451 LEGKEACMALAALCEVASINTLLSN-FIEPLQGNDIKSASDGRVHCSLNIN--TETGRLS 507 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN P E+ +R +A+ GK LVVAD Sbjct: 508 ARRPSLQNQPALEKDRY------------------------KIRQAFVAAPGKSLVVADY 543 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R+LA +A AF G D + T + + V KE Sbjct: 544 GQLELRLLAHLADCKSMKAAFKAGGDFHSRTAMNMYPHVREAVEKE-------------- 589 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + + + + A K+ Sbjct: 590 -------RVLLEWESHGKPPAPLLKDIFGSERRKAKMLNFSIAYGKTAMGLAKDWKVKVD 642 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + W + VL K+ + + + Sbjct: 643 EAKATVDLWYSDRPEVLAWQKERKQEAHT--------------------------SLRVH 676 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK-- 619 R D+ + L + R VQ + D+ M + Sbjct: 677 TLLGRARHLPDINSSNALLRSHM---ERAAI------NTPVQGSAADVAMCAMLEINRNS 727 Query: 620 ----NGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP--SWAKGLPLKAEGYEAKR 672 G+ ++L VHDE++ E P L M + L +G A+ Sbjct: 728 KLRELGWKLLLQVHDEVILEGPSESAQEAKELVIKSMMYPFNGENFLDVELVVDGDYAES 787 Query: 673 Y 673 + Sbjct: 788 W 788 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 83/301 (27%), Gaps = 65/301 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAY------AWDDEPVKLWD--RTEQSAMPSD 56 D E + + K +T + + + +LW + Sbjct: 26 ACDTE-VAEIDVKKESP---VGHGRMTCFSIYCGPSANFGNGKNRLWVDVLDGGDGILEV 81 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------PSSL 109 +Y D ++ V HN F++ + + GI P + T LAR + SL Sbjct: 82 FRRYFEDPSIKKVWHNYSFDKHILSRH-GIH-PQGFYADTMHLARLHDSARRGAKGGYSL 139 Query: 110 KNACL-------ALNF----------SEHLTKMEEGKALIARFCKGSI-DSPPYDCTRAN 151 + L + K GKA + + + P Sbjct: 140 EVLSADEKVMDGYLGHLTEEDDITLVGKKSMKELFGKANLKKDGSPGKIKTIPPVDELQR 199 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL--------------------IPLSDGERDLW-LL 190 + + Y D T LF L + + + Sbjct: 200 DGELRDAWIHYSTFDTVCTWRLFVSLQHKLSNTPWNVVDLKEKGSMYDFYEKYWRPFGEV 259 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERK----KLDEDIVKLTDG-IIRSSRQTYALRMYL 245 + G +D D + ++++ +++ + + K + + +R +L Sbjct: 260 LVQMEADGMLVDCDHLATVEKVARAQQEISVSRFRKWAAKYCPDAAMMNVGSDAQIRQFL 319 Query: 246 F 246 F Sbjct: 320 F 320 >gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa] gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa] Length = 834 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 101/365 (27%), Gaps = 86/365 (23%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 GR+ +L + TGR S QN P E+ Sbjct: 524 NLSGKSGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 563 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R IA+ G L+VAD +E RVLA +A + AF G D + T Sbjct: 564 ------KIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNM 617 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + + K +V G D + ++ Sbjct: 618 YPHIREAIEK------------------KRVLLEWYPQPGEDKPPVPLLKDAFASERRKA 659 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W + + VL+ + + + Sbjct: 660 KMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHT 719 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R V+ + S L + R Sbjct: 720 LL--------------------------GRARVFPSLTDASSSLRGH---VERAAI---- 746 Query: 597 LTENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CS 649 VQ + D+ M + G+ ++L VHDE++ E P + Sbjct: 747 --NTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVD 804 Query: 650 LMTKN 654 M+K Sbjct: 805 CMSKP 809 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 80/296 (27%), Gaps = 61/296 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DRTEQS--AMPS 55 D E +V + IT + + + +W D + + Sbjct: 71 ACDTE----VAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLH 126 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------SS 108 + + + V HN F+ + + I + T +AR S Sbjct: 127 EFAPFFESPDIKKVWHNYSFDNHVIENY---GISVSGFHADTMHMARLWDSSRRINGGYS 183 Query: 109 LKNAC---LALNFSEHLTKMEEGK-ALIARFCKGSIDSPP-------YDCTRANHVQAWQ 157 L+ + +E K GK ++ F K + +A + Sbjct: 184 LEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLTTIAPVEELQREARE 243 Query: 158 LFGEYCKRDVEATRELFKRLIPLS------------------DGERDLW----LLDQTIN 195 + Y D +T +L+K L D + W + + Sbjct: 244 PWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRME 303 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 G +D + +++ E++ K D + LR LF Sbjct: 304 TEGMLVDRAYLAVTEKVAKAEQEVAASRFRKWASRYCPDAKYMNVGSDTQLRQLLF 359 >gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] Length = 808 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 88/748 (11%), Positives = 184/748 (24%), Gaps = 197/748 (26%) Query: 28 AVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVAH 71 I + + ++ + + +L L +E V+ +A Sbjct: 141 GEICTVSLSAAAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACLA 115 N FE K + + ++ P LK A Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 257 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + K + F + A EY + Sbjct: 258 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQISRYE 317 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E + + G D +L + ++ +++ E I ++ Sbjct: 318 EWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 374 Query: 235 ------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269 S +T ++ +F I + L Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434 Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297 K+ L + LS Sbjct: 435 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 494 Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + GR+ + + TGR + QN+PR + E Sbjct: 495 HIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 541 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R+ + GK L D +G E R++AW +G++ + F G D++ Sbjct: 542 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 588 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468 T + ++ K++R K + Y G + T + + Sbjct: 589 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + +++ + + + E + G + G+ + Sbjct: 649 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 699 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + K + + + + Sbjct: 700 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 731 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645 ++G S D++ +HDEI+ E D P V Sbjct: 732 GVLSHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVEK 765 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + P +P++AEG R+ Sbjct: 766 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 793 >gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] Length = 516 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 70/546 (12%), Positives = 146/546 (26%), Gaps = 135/546 (24%) Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L S+ E + + + G + + +E + + L+ L G + S Sbjct: 18 LFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLPGKVFSLS 77 Query: 237 QTYALRMYLFLITGIDLVDMSE-----------------------GTLKSILSHSNITQL 273 T + LF I + ++++ T ++L H + Sbjct: 78 STEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHISHHHP 137 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLR----GTLQFYGASRTGRWSGCVFQPQN 329 LI+ + ++ L + R + TGR S QN Sbjct: 138 LPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVPTGRISMAFPNLQN 197 Query: 330 LPRQERSEEILTQ----------------------TIQALNRGETIADPLGLASDCVRSC 367 + ++ Q I +R+ Sbjct: 198 ISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVSLRNS 257 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA--NGEDIYVTTYAKAFNTPIDKVS 425 +NG L+ AD + +E R+L + + I+ F D++ + +KVS Sbjct: 258 FTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDYEKVS 317 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 E+R K + + G+ + + +K Sbjct: 318 DEERNFAKHLVYGIL--------------YGMGINSIASELKVDK--------------- 348 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 ++ + ++ ++ ++ + + + Sbjct: 349 ---------------EKAKVQLERFKNTYRTLIDFLESIEDRVFIDAY------------ 381 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 I R +S + + L ++ R ++ Q Sbjct: 382 --------------IKTLFGRIRNFSAIHDPKT-LPKDIGKIKRGAR------NSVPQGT 420 Query: 606 SRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWA 658 + DI M N +VL +HDE++ E P T + M Sbjct: 421 AADITKLAMINIQSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENVVKLN 480 Query: 659 KGLPLK 664 LP+K Sbjct: 481 VPLPIK 486 >gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] Length = 643 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 78/538 (14%), Positives = 137/538 (25%), Gaps = 149/538 (27%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + L ++ G D ++ + + + KL+ + L + Sbjct: 201 LFQELPVARLLTLMSVTGAPFDHSIMQRWRSDLEVTVAKLEREAQALVKKEVL-MTSPAQ 259 Query: 241 LRMYLFLITGIDLVDM--SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN----- 293 + L+ G+ S T +LS +I + ++ Sbjct: 260 VAALLYDDLGLQPPAGRRSRSTGDEVLSMMVDQHPVVSIIRKHRQVAKLITTYVDTIRSL 319 Query: 294 -------TLSEAVSSDG------------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L E RL + TGR S QN+PR Sbjct: 320 PESSPKPGLLEYFRPQNGVSESCNFLGKNRLYTVWNQTM-TVTGRLSSSNPNLQNIPRSH 378 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWI 392 E L +R I+ + LV D +E RVLA Sbjct: 379 EFE--------------------DLGVISLRKAFISPILDSHCLVSVDYRQVEIRVLAHF 418 Query: 393 AGEDWKIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 G ++F+ +G DIY A + V+KE+R KV LAL Y G + Sbjct: 419 VGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVYGSGIHLL--- 475 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A + + T + K+ + Sbjct: 476 -----------------------------------------ARQMGVTTTVAQGFKRQFN 494 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + RR + + + I Sbjct: 495 YAFPELERWMVRVWHAAKGKKYVETICKRRRKIELDGGELTSEAKRFCI----------- 543 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYD---- 623 +I+Q + DI+ M + + Sbjct: 544 ---------------------------NSIIQGSAADIMKSAMVQIAHALDEAQWKRGRP 576 Query: 624 -IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN--PSWAKG----LPLKAEGYEAKRY 673 ++L++HDE V +G L M P + +PL+ + Sbjct: 577 QLLLSIHDEFVLSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNW 634 >gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51] gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51] Length = 802 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 88/748 (11%), Positives = 184/748 (24%), Gaps = 197/748 (26%) Query: 28 AVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVAH 71 I + + ++ + + +L L +E V+ +A Sbjct: 135 GEICTVSLSAAAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 194 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACLA 115 N FE K + + ++ P LK A Sbjct: 195 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKH 251 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + K + F + A EY + Sbjct: 252 IFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQISRYE 311 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E + + G D +L + ++ +++ E I ++ Sbjct: 312 EWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFNI 368 Query: 235 ------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269 S +T ++ +F I + L Sbjct: 369 DINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 428 Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297 K+ L + LS Sbjct: 429 GVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 488 Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + GR+ + + TGR + QN+PR + E Sbjct: 489 HIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 535 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R+ + GK L D +G E R++AW +G++ + F G D++ Sbjct: 536 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 582 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468 T + ++ K++R K + Y G + T + + Sbjct: 583 RRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 642 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + +++ + + + E + G + G+ + Sbjct: 643 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 693 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + K + + + + Sbjct: 694 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 725 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645 ++G S D++ +HDEI+ E D P V Sbjct: 726 GVLSHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVEK 759 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + P +P++AEG R+ Sbjct: 760 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 787 >gi|322822411|gb|EFZ28469.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma cruzi] Length = 927 Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats. Identities = 86/717 (11%), Positives = 178/717 (24%), Gaps = 168/717 (23%) Query: 9 ETRSPQPLPKVGVWAYAE--QAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYLR 62 ET G + ++ + + + V + S S L++ L Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFILRWKDDVFVL---HASTALSFLVRVLE 352 Query: 63 D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V V N+ +L ++ + +++ + + Sbjct: 353 ELSGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAFTDYDVLLQS 412 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + A ++ L+G+ + L Sbjct: 413 CQQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQLGTQ---------GLLPAFL 463 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYA 240 E+ + LL + G+ ++L V + ++L K + + + Sbjct: 464 KQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEE 523 Query: 241 LRMYLFLITGIDL------------------VDMSEGTLKSILSHSNITQLAKDLILNRL 282 RM ++ + + T + L L++ Sbjct: 524 CRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR 583 Query: 283 ASSGSAILKLNTLSEAVSS---------DGRL-----------------RGTLQFYGASR 316 ++ + E D R+ G + Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 642 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QNLPR ++P R C G L Sbjct: 643 TGRLSCVEPNLQNLPR------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLTL 690 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D IE RV+A ++ + + A N D++ F V+ E+R + K + Sbjct: 691 LSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKS--PVNVEERTLAKRVV 748 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y G A + Sbjct: 749 FGMLYGAGP--------------------------------------------RTLATQM 764 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + V ++A + + + + + + Sbjct: 765 GVPMERALHVMSLFKASYPQIERYQRRVIDQCRT-------------------------- 798 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 D + + R D+ + +++Q + D++ GM Sbjct: 799 DGFVRTMTGRIRSLPDINDRVMAKRMYAERQ---------AFNSVIQGSAADVMKLGMLA 849 Query: 617 ATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 ++ ++ +HDEIV P V L S M S +PL+ Sbjct: 850 VERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904 >gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 808 Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats. Identities = 90/748 (12%), Positives = 186/748 (24%), Gaps = 197/748 (26%) Query: 28 AVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVAH 71 I + + ++ + + +L L +E V+ +A Sbjct: 141 GEICTVSLSAAVHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIAV 200 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNAC-L 114 N FE K + + ++ P LK A Sbjct: 201 NLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATKE 257 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + K + F + A EY + + Sbjct: 258 IFGVTMNDFSALLKKYKVDFFDEIDASKGEGLLYSAEDADYALQHYEYWSQIASQIPQYE 317 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR- 233 + L + E + + G D +L + ++ +++ E I ++ Sbjct: 318 EWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQVAKETFNV 374 Query: 234 -----SSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN---------------- 269 S +T ++ +F I + L Sbjct: 375 DINTGKSGKTNEVKSLMFDYLKIPVAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKYL 434 Query: 270 --------------------------------ITQLAKDLILNRLASSGSAILKLNTLSE 297 K+ L + LS Sbjct: 435 SIPLPENWEIIDPDKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLSS 494 Query: 298 AV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + GR+ + + TGR + QN+PR + E Sbjct: 495 HIVGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF----------- 541 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R+ + GK L D +G E R++AW +G++ + F G D++ Sbjct: 542 -------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMH 588 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVKS 468 T + P D++ K++R K + Y G + T + + Sbjct: 589 RRTASVMTGKPEDEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIV 648 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + +++ + + + E + G + G+ + Sbjct: 649 NAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGSA 699 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 + K + + + + Sbjct: 700 ERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQE 731 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV---G 645 +G S D++ +HDEI+ E D P V Sbjct: 732 GVLAHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAAEK 765 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + P +P++AEG R+ Sbjct: 766 QIKQVMEQPPVPGFPVPIEAEGSVGYRW 793 >gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba] gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba] Length = 2043 Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats. Identities = 87/654 (13%), Positives = 175/654 (26%), Gaps = 115/654 (17%) Query: 30 ITLCAYAWDDEPVKLW-----DRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERIL 79 I ++ D V DR +P +L + L + + V H+ + + Sbjct: 1471 IAGLSFCLADNVVYYMNMQNDDRATGQGVPTILKVQELCKLLARKDLTIVMHDGKEQLKI 1530 Query: 80 FKKTLGIDIPS-KRWICTSVLARTNGLPSSLK--NACLALNFSEHLTKMEEG--KALIAR 134 K + + V ++ N C G + + Sbjct: 1531 LLKAIPQLQKICAKLEDPKVANWLLQPDKTMTFYNMCQTFAPECTALADLCGSGRGYSSY 1590 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 S P + + + L D E + L + Sbjct: 1591 GLDTSSAILPKIRASIEACVTVHILKGQTENLGRI--GSGQLLKFFHDIEMPIQLTLCHM 1648 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G+ + +L + + +KL+ I + G + + + L G+ Sbjct: 1649 EFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQH-GSRFNLGSSQTVAKVL----GLHRK 1703 Query: 255 DMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 T + +L N LIL +G + L + +D R+ G Y Sbjct: 1704 ANGRVTTSRQVLEKINSP--ISQLILGYRKVAGLLAKSIQPLLKCCEAD-RIHGQSITYT 1760 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SN 372 A TGR S QN+ ++ I R + Sbjct: 1761 A--TGRISMTEPNLQNVAKE-----------------FCIQVGSDALRIACRLPFVPKDE 1801 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 + L+ AD +E R+LA ++ + ++ + +D+++ A +VS++ R Sbjct: 1802 DRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVSQDLRNST 1861 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 K + + Y G + L+ + + S + ++ + + Sbjct: 1862 KHVCYGIVYGMGMRSLAE-----SLNCSEQEARMISEQFHQAYKGIREYTSRVVKFARNQ 1916 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + + G L + + L + Sbjct: 1917 GFVETITGRRRYLD---------NINSDEEQLKNQAERQAINSTIQGSA----------- 1956 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 S + + R Y KL Sbjct: 1957 --------------------ADIAKSAILKMEKNIER---YRDKLV-------------- 1979 Query: 613 GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 D+++ +HDE++ E P + + SL M +PLK Sbjct: 1980 ----LGDQSVDLIMHLHDELIFEVPAAKAKKIAKVLSLTMENCVK--LSVPLKV 2027 >gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] Length = 808 Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats. Identities = 90/749 (12%), Positives = 184/749 (24%), Gaps = 197/749 (26%) Query: 27 QAVITLCAYAWDDEPVKLWDRTE-----------QSAMPSDLLQYLR-----DETVMCVA 70 Q I + + ++ + + +L L +E V+ +A Sbjct: 140 QGEICTVSLSATAHESRVVPISHKVGQVFEPSMDRDEARKLVLDLLDEYLFKNEKVLKIA 199 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLART----------NGLPS------SLKNACL 114 N FE K + + ++ P LK A Sbjct: 200 VNLSFETKYAAKYGKYIL--GKVADPLIM-WVRCLQIAAPQKINNPKKPTSGWGLKPATK 256 Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + K + F + A EY + Sbjct: 257 HIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQIPRY 316 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L + E + G D +L + ++ +++ E I ++ Sbjct: 317 EEWLHKI---EMSFTRAIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFN 373 Query: 234 S------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN--------------- 269 S +T ++ +F I + L Sbjct: 374 IDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKY 433 Query: 270 ---------------------------------ITQLAKDLILNRLASSGSAILKLNTLS 296 K+ L + LS Sbjct: 434 LGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLS 493 Query: 297 EAV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + GR+ + + TGR + QN+PR + E Sbjct: 494 SHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF---------- 541 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ + GK L D +G E R++AW +G++ I+ F G D+ Sbjct: 542 --------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDM 587 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVK 467 + T + ++ K++R K + Y G + T + + Sbjct: 588 HRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQI 647 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + +++ + + + E + G + G+ + Sbjct: 648 VNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGS 698 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + K + + + + Sbjct: 699 AERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQ 730 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV--- 644 +G S D++ +HDEI+ E D P V Sbjct: 731 EGVLAHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVE 764 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + P +P++AEG R+ Sbjct: 765 KQIKQVMEQPPVPGFPVPIEAEGSVGYRW 793 >gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group] Length = 885 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 64/415 (15%), Positives = 110/415 (26%), Gaps = 89/415 (21%) Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 L S + L +S D GR+ +L + TGR S Sbjct: 546 EACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNL 603 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN P E+ +R +A+ G L+VAD +E R Sbjct: 604 QNQPALEKDRY------------------------KIRQAFVAAPGNSLIVADYGQLELR 639 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA +A + AF G D + T + D V + KV Sbjct: 640 ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKV 681 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G + + + + + A K+ + Sbjct: 682 LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 741 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 K W + VL E + + R Sbjct: 742 KLWYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRS 775 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621 + ++ S R VQ + D+ M + G Sbjct: 776 RRFPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELG 826 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 + ++L VHDE++ E P ++ M+K + + L + A+ + Sbjct: 827 WRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 881 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 81/313 (25%), Gaps = 64/313 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E V + + + + +W D + + Sbjct: 138 ACDTE----VANIDVKQETPVSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDV 193 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 194 LMEFAPFFEDPSIRKVWHNYSFDSHVIENY---GIKVAGFHADTMHLARLWDSSRRIDGG 250 Query: 107 SSLKNACLAL-----------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ + K G I + + + Sbjct: 251 YSLEGLTNDHRVMGVVPKELQKIGKRSMKTIFGWKKIKKDG-SAGKIISMEPVEVLQRDD 309 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGER----------------DLWL----LDQTIN 195 +++ Y D +T L++ L + + + W L + Sbjct: 310 REMWICYSSLDSMSTLRLYESLKSKLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKME 369 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLFLITG 250 G +D + +++++ +RK + K D + +R F G Sbjct: 370 TAGMLVDRGYLSEIEKVAVAQRKLAADKFRKWASKYCPDAKYMNVNSDTQIRQLFF--GG 427 Query: 251 IDLVDMSEGTLKS 263 I+ TL Sbjct: 428 IENRCKPGETLPK 440 >gi|156552095|ref|XP_001605062.1| PREDICTED: similar to Mus308 [Nasonia vitripennis] Length = 2242 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 67/534 (12%), Positives = 145/534 (27%), Gaps = 74/534 (13%) Query: 21 VWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSD----LLQYLRDETVMCVAHNS 73 + Y + +W + V TE + L L D +V N+ Sbjct: 1742 AYVY-GDRKLCGIVISWGTKAVYYMPFGITTETKITIKERMSFLRDILSDASVTLRCFNA 1800 Query: 74 LFE-RILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEHLT----KM 125 + +F ++ P+ ++ + Sbjct: 1801 K-DVYKMFYICCEVE-PNCSFLDPKAGDWLMNAETCNKGYTELAAQYFPRGIDIANACEN 1858 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 G ++ R + + V+A + F L D E Sbjct: 1859 NYGTYVLTRDARAGAKALLAWYVANAVVEAVKEFSP-------------ISLSAYKDIEM 1905 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L+ + RG+ I+++ + +L +I + +++E+ + ++ Sbjct: 1906 PTILILANMELRGFGINVESLQELATVIKNDLGRIEEEAFRAAGRKFNFYSSKEVSQVLG 1965 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 G + + + +L+ + + L + + R+ Sbjct: 1966 LNKRGRACTNKNA--------LKSCENPISNLVTLWRKLTTVQTKIVFPLLQLERKNNRI 2017 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G Y + TGR S Q +PR +S+ VR Sbjct: 2018 HGNCITY--TVTGRVSMHEPNLQTIPRDFKSDISGCIL-------------------SVR 2056 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + ++G ++ AD +E R+LA + + K DI+ + A+ T ++V Sbjct: 2057 MAFVPASGNIMLSADFCQLELRILAHFSQDPVLCKLLHGKGDIFKSIAARLNKTTEEQVD 2116 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 + R K + A+ Y GAK L + + ++ + Sbjct: 2117 DDMRQRAKQLCYAMIYGMGAKSLAET-----LSATESEAKDYLEAFMGTYKGIRVWLTGV 2171 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 +Q + R G+ + Sbjct: 2172 CEQARVEGFVSTIANR---------RRILPGINSKISAVKSQAERQAVNTKVQG 2216 >gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 886 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 80/633 (12%), Positives = 182/633 (28%), Gaps = 145/633 (22%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + N +F++ I + T + Sbjct: 379 LRPILENNKYYKIGKNLKNVFHIFQEY-NILFRGIHFDTTII----------------NY 421 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELF 174 + + K ++ + LI ++ K + + + +++ + K + RE F Sbjct: 422 YYKLNYKKNKKYQNLIYKYKKNKKEKSFKRKFIIMQESLISLKIYFLFKKNIKKKKRENF 481 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + + + L + I + G I +LK Q+ ++ K + + + Sbjct: 482 QLI------DMSLLPILAEIENNGVLI-KKKILKKQKKNHEKTLKKLKKKIFKITKEKFN 534 Query: 235 SRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF + + ++ T + +L + + +IL Sbjct: 535 INSSKQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKLSKIHILPKIILQFRLIKKIINT 594 Query: 291 KLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L L ++++ R+ T + TGR S QN+P Sbjct: 595 YLRNLIKSINNKTNRIHTTYNQIN-TSTGRLSSKNPNLQNIP------------------ 635 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I L+ AD + IE R++A + + IK +DI+ Sbjct: 636 ------IKTKIGRKLRIAFITKKKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIH 689 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 ++T + FN P++ K Sbjct: 690 ISTASHIFNKPLE--------------------------------------------KIK 705 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + + + + + K + + + + K+ + + K+ + Sbjct: 706 KYHRNIAKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAK 765 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 I R+L ++ YL + + Sbjct: 766 KRGY--------------------------IKTLFKRKLYIPNINSKNIYLKNSAKRFC- 798 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYF 642 ++Q + DI+ + M I++ +HDE++ E + Sbjct: 799 --------INLMIQNTASDIIKKSMITLHHLFKKKFPKDIKIIMQIHDELIFEIKEKKKD 850 Query: 643 SVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + + +M N +PL K ++ Sbjct: 851 KIIDVIKKIMENNTKLI--IPLYITTKIGKNWK 881 >gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family protein, putative [Arabidopsis thaliana] Length = 1067 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 56/383 (14%), Positives = 95/383 (24%), Gaps = 106/383 (27%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ +L + TGR S QN P E+ Sbjct: 741 NVSGKDGRVHCSLNIN--TETGRLSARRPNLQNQPALEKDRY------------------ 780 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +AS G LVVAD +E R+LA + G ++AF G D + T Sbjct: 781 ------KIRKAFVASPGNTLVVADYGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNM 834 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 + + V Q G D + + Sbjct: 835 YPHVREAVENGQV------------------ILEWHPEPGEDKPPVPLLKDAFGSERRKA 876 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + + K+ + W Q V + + + Sbjct: 877 KMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMRKKEAIEDGYVLT 936 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + K + + R Sbjct: 937 LL--------------------------GRSRRFPASKS-----RAQRNHIQRAAI---- 961 Query: 597 LTENIVQAISRDILCEGMKNA------TKNGYDIVL------------------TVHDEI 632 VQ + D+ M K G+ ++L +HDE+ Sbjct: 962 --NTPVQGSAADVAMCAMLEISINQQLKKLGWRLLLQWSLLDWKLSNKGNLYWKQIHDEV 1019 Query: 633 VSETPDTPYFSVGTL-CSLMTKN 654 + E P + M+K Sbjct: 1020 ILEGPIESAEIAKDIVVDCMSKP 1042 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 62/297 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVKLW-DR--TEQSAMPS 55 D E +V + + + + + +W D + + Sbjct: 290 SCDTE----VSGIEVKEETPVDHGELICFSIYCGPEADFGNGKSCIWVDVLGENGREVLA 345 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSL 109 + Y D + V HN F+ + + GI+I T +AR SL Sbjct: 346 EFKPYFEDSFIRKVWHNYSFDSHIIRNH-GIEISGFH-ADTMHMARLWDSARRIKGGYSL 403 Query: 110 KNAC---LALN----------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + L + K GK + + + Sbjct: 404 EALTSDPKVLGGTQTKEEAEFLGKISMKTIFGKRKLKKDGSEGKIVVIP-PVEELQREDR 462 Query: 157 QLFGEYCKRDVEATRELFKRLIP------------------LSDGERDLW----LLDQTI 194 + + Y D +T +L++ + + D + W L + Sbjct: 463 EAWISYSALDAISTLKLYESMTKKLQLMDWHLDGKPVLGRTMLDFYHEFWRPFGELLVKM 522 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 G +D + + +++++ E++ D + LR F Sbjct: 523 EAEGILVDREYLAEIEKVAKAEQQVAGSRFRNWASKYCPDAKYMNIGSDTQLRQLFF 579 >gi|71660963|ref|XP_817509.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain CL Brener] gi|70882706|gb|EAN95658.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma cruzi] Length = 924 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 86/717 (11%), Positives = 178/717 (24%), Gaps = 168/717 (23%) Query: 9 ETRSPQPLPKVGVWAYAE--QAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYLR 62 ET G + ++ + + + V + S S L++ L Sbjct: 293 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVFVL---HASTALSFLVRVLE 349 Query: 63 D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V V N+ +L ++ + +++ + + Sbjct: 350 ELSGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAFTDYDVLLQS 409 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + A ++ L+G+ + L Sbjct: 410 CQQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQLGTQ---------GLLPAFL 460 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYA 240 E+ + LL + G+ ++L V + ++L K + + + Sbjct: 461 KQEKRISLLCAAMKLNGFPVNLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLDE 520 Query: 241 LRMYLFLITGIDL------------------VDMSEGTLKSILSHSNITQLAKDLILNRL 282 RM ++ + + T + L L++ Sbjct: 521 CRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLRLLAPHHELPRLLIAYR 580 Query: 283 ASSGSAILKLNTLSEAVSS---------DGRL-----------------RGTLQFYGASR 316 ++ + E D R+ G + Sbjct: 581 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGESSDKKDDTPVKWVTLHPNFVQEG-TD 639 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QNLPR ++P R C G L Sbjct: 640 TGRLSCVEPNLQNLPR------------SKAIAENDNSEPYEAEMATFRRCFAVPIGLTL 687 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D IE RV+A ++ + + A N D++ F V+ E+R + K + Sbjct: 688 LSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKS--PVNVEERTLAKRVV 745 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y G A + Sbjct: 746 FGMLYGAGP--------------------------------------------RTLATQM 761 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + V ++A + + + + + + Sbjct: 762 GVPMERALHVMSLFKASYPQIERYQRRVIDQCRT-------------------------- 795 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 D + + R D+ + +++Q + D++ GM Sbjct: 796 DGFVRTMTGRIRSLPDINDRVMAKRMYAERQ---------AFNSVIQGSAADVMKLGMLA 846 Query: 617 ATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 ++ ++ +HDEIV P V L S M S +PL+ Sbjct: 847 VERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 901 >gi|300176838|emb|CBK25407.2| unnamed protein product [Blastocystis hominis] Length = 627 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 52/391 (13%), Positives = 100/391 (25%), Gaps = 88/391 (22%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ R+ +L + TGR S QN P E+ Sbjct: 314 TFILPLQSVADAEQRVHCSLNLN--TETGRLSSRNPNLQNQPALEKDVYF---------- 361 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A G L+V+D +E RVLA + I+AF G D + Sbjct: 362 --------------IRKAFMAKPGNILLVSDYGQLELRVLAHMTKCKAMIEAFRLGGDFH 407 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T ++ + ++K L + Sbjct: 408 SRTALSMYDYIKEDIAK--------GTCLLEWDSSKG------------EPPAPLLKHKY 447 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 ++ + + L + + V W + V + + + Sbjct: 448 ASERRQAKILNFSLAYGKTAHGLQKDFGVSLEEAKEVLAKWYKERPEVKRWQELTIQTAK 507 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R D+ + + Sbjct: 508 ETG--------------------------FTRTLMGRYRPLPDINSKNKWKEGHACRA-- 539 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI+ M K G++++L +HDE++ E P Sbjct: 540 -------AINTPIQGGAADIVMMAMLKIEKDERLRRLGFEMLLQIHDEVILEGPIENVAE 592 Query: 644 VGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L M + + L + A + Sbjct: 593 AKKCLVEDMMHPFARPLLVDLVVDCNAAPSW 623 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 50/198 (25%), Gaps = 48/198 (24%) Query: 97 SVLARTNGLP------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSI--DSPPYDCT 148 +AR SL++ L + K GK I R D PP Sbjct: 1 MHMARLWESSRVGKGSYSLESLSEELYIRKRPYKEIFGKPHIKRDGMQGKTIDVPPVIVA 60 Query: 149 RANHVQA---------WQLFGEYCKRDVEATRELFKRLIPLSDG---------------- 183 + + +Y D EAT + K L L Sbjct: 61 FSLSPHPQDLQRGSATRSAWIDYSAFDAEATWHVRKELESLLREMFWTSESLNGALSELS 120 Query: 184 ERDLW--------LLDQTINDRGYRIDLD-LVLKLQELIAQERKKLDEDIVKLTDGI--- 231 D + L + RG +D+ + +++ +K Sbjct: 121 MWDFYRRYYRDFGQLLVNMERRGIHVDVARHLPEIEREARAALEKARNQFKSWAVAEGGS 180 Query: 232 ---IRSSRQTYALRMYLF 246 + T ++ LF Sbjct: 181 DLLFMNVHSTAQIQQLLF 198 >gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group] gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group] Length = 560 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 64/415 (15%), Positives = 110/415 (26%), Gaps = 89/415 (21%) Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 L S + L +S D GR+ +L + TGR S Sbjct: 221 EACHAIAALCEICSIDSLISNFILPLQGNHISCDEGRIHCSLNIN--TETGRLSARTPNL 278 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN P E+ +R +A+ G L+VAD +E R Sbjct: 279 QNQPALEKDRY------------------------KIRQAFVAAPGNSLIVADYGQLELR 314 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +LA +A + AF G D + T + D V + KV Sbjct: 315 ILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEE------------------KKV 356 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 G + + + + + A K+ + Sbjct: 357 LLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTL 416 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 K W + VL E + + R Sbjct: 417 KLWYRDRKEVLAWQMKQKELAQEKCEVYTLL--------------------------GRS 450 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621 + ++ S R VQ + D+ M + G Sbjct: 451 RRFPNMAHATSGQRGHI---ERAAINAP------VQGSAADVAMCAMLEIDRNARLKELG 501 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP--SWAKGLPLKAEGYEAKRY 673 + ++L VHDE++ E P ++ M+K + + L + A+ + Sbjct: 502 WRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNW 556 >gi|71668117|ref|XP_820999.1| mitochondrial DNA polymerase I protein A [Trypanosoma cruzi strain CL Brener] gi|70886365|gb|EAN99148.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma cruzi] Length = 927 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 87/717 (12%), Positives = 178/717 (24%), Gaps = 168/717 (23%) Query: 9 ETRSPQPLPKVGVWAYAE--QAVITLCAYAW----DDEPVKLWDRTEQSAMPSDLLQYLR 62 ET G + ++ + + + V + S S L++ L Sbjct: 296 ETNFSISAKTHGKVHFVRKTNPEMSHLSVQFFVLRWKDDVFVL---HASTALSFLVRVLE 352 Query: 63 D-ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V V N+ +L ++ + +++ + + Sbjct: 353 ELSGVEIVTFNAPSLLLLLLSYKQGNLFTLCVSDIRLMSWMLQPSAGADAFTDYDVLLQS 412 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + A ++ L+G+ + L Sbjct: 413 CQQQIGLAAGFRNMENCTVKEIVCHRVYYMAPLYRLLYGQLGTQ---------GLLPAFL 463 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYA 240 E+ + LL + G+ + L V + ++L K + + + Sbjct: 464 KQEKRISLLCAAMKLNGFPVKLSEVEGFKTRCIARMEELRIAAQKLVPSMPEFNMQNLEE 523 Query: 241 LRMYLFLITGIDL------------------VDMSEGTLKSILSHSNITQLAKDLILNRL 282 RM ++ + + T + L L++ Sbjct: 524 CRMAIYEVLQLGTHLTHARNDGTDSCSLTVTKSGKLSTSEETLKLLAPHHELPRLLIAYR 583 Query: 283 ASSGSAILKLNTLSEAVSS---------DGRL-----------------RGTLQFYGASR 316 ++ + E D R+ G + Sbjct: 584 KTAKLLQTYTVGMMETAFPFKGNDSEFTDNRIGECSDKKDDTPVKWVTLHPNFVQEG-TD 642 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QNLPR + ++P R C G L Sbjct: 643 TGRLSCVEPNLQNLPR------------SKVIADNDNSEPYEAEMATFRRCFAVPIGLTL 690 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D IE RV+A ++ + + A N D++ F VS E+R + K + Sbjct: 691 LSVDYEQIELRVVAHLSADTALVDAMTNATDVHRNIAENIFRKS--PVSVEERTLAKRVV 748 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y G A + Sbjct: 749 FGMLYGAGP--------------------------------------------RTLATQM 764 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + V ++A + + + + + + Sbjct: 765 GVPMERALHVMSLFKASYPQIERYQRRVIDQCRT-------------------------- 798 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 D + + R D+ + +++Q + D++ GM Sbjct: 799 DGFVRTMTGRIRSLPDINDRVMAKRMYAERQ---------AFNSVIQGSAADVMKLGMLA 849 Query: 617 ATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 ++ ++ +HDEIV P V L S M S +PL+ Sbjct: 850 VERDVLQLYNGDVRLLAQIHDEIVLSVPTHKLREVVPLVSRSMMHAVSLL--VPLRV 904 >gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] Length = 774 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 65/393 (16%), Positives = 103/393 (26%), Gaps = 95/393 (24%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L +L E V + R+ +L + TGR S QN P E+ Sbjct: 457 TFLTSLQERVDNKSRVHCSLNLN--TETGRLSSRGPNLQNQPALEKDTYQ---------- 504 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R AS G L+VAD +E R+LA + G I+AF G D + Sbjct: 505 --------------IRKAFEASPGNNLIVADYGQLELRLLASMTGCKSMIEAFEAGGDFH 550 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T F+ KV + G Sbjct: 551 SRTAMDMFD----------YVKAKVD--------SGEALLEWDYAKG--DPPKPLVKDLF 590 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 ++ + + + + + E + KAW V + Sbjct: 591 ASERRKAKTLNFSIAYGKTAFGLSDDWGVTLQEAEEMLKAWYKARPEVDVWQTQVKLTAR 650 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + R + K Q R Sbjct: 651 NHGYTRTLM--------------------------GRYRDLPEAKSKRQKF---AKQAER 681 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643 +Q + DI M G+ ++L VHDE++ E P+ Sbjct: 682 ASI------NTPIQGGAADIAMMAMNKINANEKLKALGWILLLQVHDEVMLEGPEETAKE 735 Query: 644 V-GTLCSLMTKNPSWAKGL-----PLKAEGYEA 670 + + M + W GL PL +G Sbjct: 736 AFDEVLNNMQEP--WVFGLMKTAVPLLVDGSYT 766 Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 84/287 (29%), Gaps = 51/287 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVK--LWDRTEQSA-M 53 D E L VG +T + Y + P D + +A + Sbjct: 27 ACDTE-VMAIDLKSVGP---VGNGYVTCASVYSGPDFDYGLGEGPGSCLWIDNLDDAAGI 82 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-------- 105 + + + + V HN F+R + GID+ T +AR Sbjct: 83 LQEFKAWFENPRFLKVWHNYGFDRHVM-WNEGIDVQGLG-GDTMHMARLQDTCRSKMAKG 140 Query: 106 -PSSLKNA-CLALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 SL+ L+ + K G L +G++ P + ++ ++ +Y Sbjct: 141 GGYSLEALTADLLSRRKQPMKELFGVHRLRKDGSEGALVDIPPVESMQRDPESRSMWIKY 200 Query: 163 CKRDVEATRELFKRLIPLSDG----------------ERDLWLLDQTINDRGYRID-LDL 205 D E T L + L R + + RG R++ D Sbjct: 201 SCYDAEGTWLLREELEKRLKMKPWIGNKNLWDYYFLHMRPFAEVLTDMERRGVRVNAKDY 260 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR------SSRQTYALRMYLF 246 + ++ ++R + + I + L+ F Sbjct: 261 LFNVERKAREDRVHHSKIFREWAASKIGPDGLALNLSSATQLQALFF 307 >gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens] Length = 1762 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 1054 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 1113 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 1114 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 1172 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 1173 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 1232 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 1233 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 1287 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 1288 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 1346 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 1347 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 1406 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 1407 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 1464 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 1465 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 1524 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 1525 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 1579 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 1580 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 1630 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 1631 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 1682 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 1683 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVVEEDV 1723 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 1724 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 1754 >gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens] Length = 2724 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 88/753 (11%), Positives = 185/753 (24%), Gaps = 144/753 (19%) Query: 13 PQPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--------MPSDLLQYLRD 63 P+ G + ++ A W + ++ +P L L Sbjct: 2016 EIPIRDDGFPIKGCDDTLVVGLAVCWGGRDAYYFSLQKEQKHSEISASLVPPSLDPSLTL 2075 Query: 64 ETVMCVAHN------------SLFE----RILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + M + +++ + + GI + + + V S Sbjct: 2076 KDRMWYLQSCLRKESDKECSVVIYDFIQSYKILLLSCGISLE-QSYEDPKVACWLLDPDS 2134 Query: 108 ---SLKN-ACLALNFS-EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 +L + L L ME + + + + + + + Sbjct: 2135 QEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQL 2194 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R E + G + ++ + ++ Sbjct: 2195 NSLLQKENLQDVFR-----KVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIET 2249 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDL---------VDM----------------- 256 +L G S + + LFL + Sbjct: 2250 QAYQLA-GHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLG 2308 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQ 310 T K +L+ LIL + + + L + R+ Q Sbjct: 2309 RQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFLGMERIYPVSQ 2368 Query: 311 FYGASRTGRWSGCVFQPQNLPRQ----------------ERSEEILTQTIQALNRG---- 350 + A TGR + QN+PR + +L +G Sbjct: 2369 SHTA--TGRITFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVN 2426 Query: 351 --------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E AD S +R + G ++ AD + +E R+LA ++ + I+ Sbjct: 2427 PRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVL 2486 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G D++ + A+ + V + R K + + Y GAK + +++ Sbjct: 2487 NTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QMGIKEN 2541 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++G R G+ Sbjct: 2542 DAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGR---------RRYLPGIKDNNP 2592 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V + + + G + Sbjct: 2593 YRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTF--------KSHGHREGMLQ 2644 Query: 583 ATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + L R+R G + G +L +HDE++ E + Sbjct: 2645 SDRTGLSRKRKLQGMFC--PI-----------------RGGFFILQLHDELLYEVVEEDV 2685 Query: 642 FSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRY 673 V + M + LK + + Sbjct: 2686 VQVAQIVKNEMESAVK--LSVKLKVKVKIGASW 2716 >gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex] Length = 1781 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 85/681 (12%), Positives = 179/681 (26%), Gaps = 166/681 (24%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTE------QSAMPSDLLQYLRDETVMCVAHNSLFER 77 Y E+ I A AW V E A S L +L + V +++ Sbjct: 1213 YKEKNSILGVAVAWSCLCVNYIQLRERFDSNLDLAKVSKLKSWLEALIRLKVEF-IVYDI 1271 Query: 78 IL-------FKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEE 127 L + + + SL + TKM Sbjct: 1272 RSTANDLRPLFHHL---LNEMLFRDVDLCQWLLEPSNSSVSLPKLSKMYSQQGSPTKMYR 1328 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 G+ I C + + + + + L P D E + Sbjct: 1329 GREKILHEC-------------CALLDIFHQLKQRLSK--------EELLQPFVDVEMPM 1367 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + G D + +++ K L+E +L + ++ L Sbjct: 1368 VATMLRMEQIGIAFDRSNCELILQILRNHLKMLEEAAHRLAGRSFSLTSTKEVSKIVASL 1427 Query: 248 ITGIDLVD-------MSEG------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 I+ + + + + S++ I L + ++ R S+ + Sbjct: 1428 NLCIEEKNPQSFINPLKKKFQPLSVSKASLIKLGRIHPLPRVVVEFRKVSAIIQTIICPL 1487 Query: 295 LSE---AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L VS R+ G +F A TGR + Q++PR Sbjct: 1488 LQASTFHVSGVERIAGECEFRNA--TGRVNIVQPNLQHIPRP------------------ 1527 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-DIYV 410 VRS A+ G L+ AD + +E R+LA ++ + + D++ Sbjct: 1528 --FSLSDGRMINVRSAFHAATGTTLLSADYSQLELRILAHLSEDTGLCSILSKPNGDVFR 1585 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + + V+ ++R K + G+ Sbjct: 1586 GIVSVWKKKKQEDVTDDERQQAKQIC--------------YGIVYGMG------------ 1619 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A + ++ +L ++ + + + + + Sbjct: 1620 ------------------CKSLAEQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRS 1661 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 ++ RR + + + +Q R+ Sbjct: 1662 KG--------------------------FVITLLGRRRFLPSINSNNAAQR---AQAERQ 1692 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + D++ + ++ +V +HDE++ E P Sbjct: 1693 A------VNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVERA 1746 Query: 645 GTLCS-LMTKNPSWAKGLPLK 664 + M +P+ Sbjct: 1747 ARVVRHCMETAIPMKIRIPVA 1767 >gi|213421456|ref|ZP_03354522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 236 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 75/252 (29%), Gaps = 37/252 (14%) Query: 96 TSVLARTNGL---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T + + + + L + GK Sbjct: 1 TMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQL---------------TF 45 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYR 200 + A + G Y D + T +L ++ P E L + + G + Sbjct: 46 NQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVK 105 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 ID ++ K E I +L++ + G + T L+ LF GI + + Sbjct: 106 IDPAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGG 164 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315 T + +L + +IL + + L ++ GR+ + + Sbjct: 165 APSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-T 223 Query: 316 RTGRWSGCVFQP 327 TGR S +P Sbjct: 224 ATGRLSSTDTEP 235 >gi|290998603|ref|XP_002681870.1| predicted protein [Naegleria gruberi] gi|284095495|gb|EFC49126.1| predicted protein [Naegleria gruberi] Length = 1648 Score = 157 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 62/524 (11%), Positives = 137/524 (26%), Gaps = 107/524 (20%) Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE-----DIVKL 227 + L + + E + T+ G R + + +LI + ++ I+ Sbjct: 1168 INLELRQMFEFEMSFSKVLSTMEHNGIRFNYHWIKHNTKLIDAKLDEITRDLNSLQILDG 1227 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + ++ L + G + ++ L+ + I Sbjct: 1228 KKIDVSNNDHVALLLFDKLKLKGTER-KTNKEILEKLKKLYPDKSYIMKQISEYRYLLNI 1286 Query: 288 AILKLNTLSEAV--SSDGR-LRGTLQFYGAS-RTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + + D + R + TGR S QN+P Sbjct: 1287 KTHHIQNMPNDIKYCPDTQEYRIFASQMQTTSATGRLSVKNPNLQNIPND---------- 1336 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK--IKA 401 + + + +RS I NG +V D IE R+LA ++ + I + Sbjct: 1337 ----IDIKDPFSQKSIITLSIRSAFIPRNGYVMVSIDYKNIELRILAHLSQDRTLSDILS 1392 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 + P + V R++ K + + Y G++ Sbjct: 1393 NTERDIFEEIARNFWNFRPEEPVPLSHRSLVKQIIYGISYCMGSETLSG----------- 1441 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 K ++ + ++ E K+ + K+QG+ Q Sbjct: 1442 -----KMFNSENEDFMLRPGEDRIEA---------------AERYKQNFFEKYQGLKQYK 1481 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + S S +R + + Sbjct: 1482 DFVENHLVEKHYVETSYSRKRFIHDICSDDSSKRAAARRA-------------------- 1521 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---------KNGYDIVLTVHDEI 632 + Q + DI+ M + ++L +HDE+ Sbjct: 1522 ---------------ALNTVSQGSASDIMKIVMLGIYSFMRHFNKKEERAYMLLQIHDEL 1566 Query: 633 VSETPDTPYFSVGTL---CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + E + + + ++M +PL + + Sbjct: 1567 LFEVREDSLSTF--IYCTKNIMQNTDKKLL-VPLPVKVQIGDSW 1607 >gi|115304357|ref|YP_762649.1| DNA polymerase [Cyanophage Pf-WMP4] gi|110559071|gb|ABG75891.1| DNA polymerase [Phormidium phage P4] gi|113201851|gb|ABI33163.1| PfWMP4_19 [Phormidium phage Pf-WMP4] Length = 630 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 87/645 (13%), Positives = 174/645 (26%), Gaps = 105/645 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + +D+ET +P + A L + + W + L + L Sbjct: 4 YIALDLETEQVARMPHGKIHA--------LFLASNNGAEFYPWGLAA----AAVLEKLLT 51 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V+ V N+ ++ + + G+DIP R++ T VLA + + S Sbjct: 52 DPDVIFVIQNAAYDVWVL-RHHGVDIPPGRYVDTMVLAHCVNPQQG-DYSLESYGRSVDD 109 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K++ ++ P + Y +DV T + + L+P + Sbjct: 110 EKVDYRTEMVRAGLWEGGKEDPSVYDVPFNPI----MERYGLQDVRLTLKWWGELLPHLE 165 Query: 183 GERDLWLLDQTINDR----------GYRIDLD-LVLKLQE----------LIAQERKKLD 221 + L I+ G ID + E A+ K+ Sbjct: 166 RDARLADSYYNIHLPAVETTISLHGGLYIDRKATLKAATELMGDIEEGYLEFARRYPKVY 225 Query: 222 EDIVKLTDGII-------------RSSRQTYALRMYLFLITGID--------LVDMSEGT 260 + + + + L+++ + S+ Sbjct: 226 KMKWNDKTKEYDIVMKGGKPVMTAPNLQSPNDMASLLYMMGWVPTEFKRSTGKPVTSQDV 285 Query: 261 LKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 LK +++ K+ + +L L E V G ++G G ++T Sbjct: 286 LKLLIADDETPPKLKECATFVQSLRSLVGIQNQLMQLLELVDDKGFVKGNWYQTG-TQTF 344 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R+S QN + VR C G + + Sbjct: 345 RYSSSSPNMQNFSTRHPK-----------------------WGKRVRECFTPPPGYVMFM 381 Query: 379 ADLAGIEARVLAWI----AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE---QRAI 431 DL+ IE ++AW AG+ + G D + + + E R Sbjct: 382 GDLSQIELAIVAWYLEILAGDSAMAEGNRQGRDAHDVNTENWYGVTRESNPDEFKQCRPR 441 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP- 490 K A Y ++ +A G ++ +++ + Q Sbjct: 442 AKNGAFAANYGA---KYRRLAFTIGCSFEEAKDILETVERATQITPLKQLVWDTMRQSRD 498 Query: 491 ----EFAVKDKLIGTACELVKKAWRAKHQGVLQL----WKDLTEGFACVVQEGGSISARR 542 + + R + G+ + + +GG S R Sbjct: 499 VLPVQVPYSWRKTTKGFLYDCLNTRLFYPGIDSKERYERESSERKAFNALAQGGCASILR 558 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 L + L + Y + + + Sbjct: 559 KLCNQSLPYIQAGEGWFAGLVHDEAIGYVKEQYADETIIHLNREW 603 >gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma brucei gambiense DAL972] Length = 958 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 85/678 (12%), Positives = 167/678 (24%), Gaps = 175/678 (25%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + V ++ + + + L V V N+ + + ++ Sbjct: 323 DDVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLPLLSYKQGKFFTSCVSDVRLM 380 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + + + G L A CKGS ++ Sbjct: 381 TWMLEPSADTAEFADYDKL-LQSYQQQIGLPAGLNAAECKGSKEAV-SHRVFYMEPLYRM 438 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L+G L E+ + ++ + G+ ++L V + A++ Sbjct: 439 LYGR---------LGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKM 489 Query: 218 KKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDL------------------VDMSE 258 +KL + + + + R+ L+ + + + Sbjct: 490 EKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGK 549 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DG---------- 303 T + L +++ + + E DG Sbjct: 550 LSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSITEQ 609 Query: 304 -----------------RLRGTLQFYGASRTGRWSGCVFQPQNLPR-------------- 332 +L L G + TGR + Q LPR Sbjct: 610 GKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTN 668 Query: 333 ------QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 E+ +R C+ A +G LV D +E Sbjct: 669 DADSENGNYENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVEL 728 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA ++G+ I DI+ + F V+ E+R++ K + + Y G Sbjct: 729 RVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP- 785 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 A + + V Sbjct: 786 -------------------------------------------RGLAQQMGVSVEQALRV 802 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +++ V + + + D + S R Sbjct: 803 SSLFKSCFPTVDAYQRRIIDQCR--------------------------SDGSVRTLSGR 836 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 D+ T S R+ +VQ + D++ GM + Sbjct: 837 VRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADVMKLGMIAVEREVLQPHA 887 Query: 621 -GYDIVLTVHDEIVSETP 637 ++L VHDEI+ P Sbjct: 888 PDVRLLLQVHDEIILSVP 905 >gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 199 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 11/179 (6%) Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 C++ K+AWR H + W+ L + + + ++ + + + L Sbjct: 25 CDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRL 79 Query: 563 PSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 PS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 80 PSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPA 139 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E RYRK Sbjct: 140 IEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 198 >gi|158285510|ref|XP_564726.3| AGAP007533-PA [Anopheles gambiae str. PEST] gi|157020027|gb|EAL41770.3| AGAP007533-PA [Anopheles gambiae str. PEST] Length = 1997 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 65/510 (12%), Positives = 132/510 (25%), Gaps = 120/510 (23%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + L + G+ +D + + L + R ++ E+ KL + A+ Sbjct: 1565 REMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFGSSRAVA 1624 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 L L G T++ +L LA +I R S + L V Sbjct: 1625 KALRLAGG--NDRKQCRTVRQVLERLESP-LAALVIAYRKIESNL-TRTIEPLYRIVRPG 1680 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 F + TGR + Q + + LT+ Sbjct: 1681 SNRVHGRSFCF-TSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAPPPLF------- 1732 Query: 363 CVRSCII---ASNGKKLVVADLAGIEARVLAWIAGEDWKIKA-----------FANGEDI 408 RS G L+ AD +E +L ++ + + A D+ Sbjct: 1733 SCRSTFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEARSDV 1792 Query: 409 YVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + A+ + + ++ K + + Y G Sbjct: 1793 FRALAARWNHYERESDVSDELRNRTKAIVYGVIYGMGV---------------------- 1830 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A + +L A + + + A + + + + + Sbjct: 1831 ----------------------RAMAAELQLDEDAARTLMEQFHATYPEIRRYIERVVRL 1868 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + I + RR + + + + + Sbjct: 1869 TRQLGY--------------------------IETLTGRRRHLPAITSENARERSEAERQ 1902 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATK-----------NGYDIVLTVHDEIVSET 636 +Q + DIL + + VL +HDE++ E Sbjct: 1903 ---------AVCTTIQGSAADILKNAIVRMRRNLRKYRNVLELERIRFVLHMHDELIYEV 1953 Query: 637 PDTPYFSVGTL-CSLMTKNPSWAKGLPLKA 665 P + + + S M +PL+ Sbjct: 1954 PRSQLHKIAKILKSSMENCAK--LSVPLRV 1981 >gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra magnipapillata] Length = 493 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 65/540 (12%), Positives = 140/540 (25%), Gaps = 111/540 (20%) Query: 164 KRDVEATREL--FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 E L + D E I G KL+E++ + + Sbjct: 29 HLMEEMELRLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEILKGKLDSIQ 88 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ KL+ G + S + +L + LIL Sbjct: 89 QECYKLS-GSVFSLSSPADVAR-------------------EVLEKLSKFHALPKLILEW 128 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNLPRQ----- 333 + + + + S L+ F A + TGR + QN+P++ Sbjct: 129 RKINSTLTKFVYPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQNVPKEFDIKL 188 Query: 334 ---ERSEEILTQTIQALNRGETIADPLGLASDC----------------VRSCIIASNGK 374 T ++ + ++ L S +RS + + Sbjct: 189 SSLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMRSTFVPFSSG 248 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +V AD +E R++A ++ + IK D++ + A+ + + V+ QR K Sbjct: 249 VMVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVTTVQRQHAKQ 308 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y G K L +++ + ++ + ++ Sbjct: 309 ICYGIIYGIGIKAL-----SHQLGVEENDASEYMEKFKNRFKGVKRFIQNTIEEARANGF 363 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 L G L + + + Sbjct: 364 VKTLGGRKRYL---------PAINSKITNDKSHAERQAVNTTIQGSAADLV--------- 405 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 ++ +++ + + + K Sbjct: 406 ------------KIAMNNIDIKLNKIFGNSCFNKLAEKSQPK------------------ 435 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 G +VL +HDE++ E V + M +P+K + Sbjct: 436 ------GAYLVLQIHDELLYEVNKENVDIVIKLIRREMESAIILTVKMPVKV--KIGSSW 487 >gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760] gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760] Length = 651 Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 91/638 (14%), Positives = 178/638 (27%), Gaps = 150/638 (23%) Query: 55 SDLLQYLRDETVMCVAHNS-----LF--ERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 DLL+ + + + + HN + + + + R T + A T P Sbjct: 136 KDLLKEIINSKRLIIVHNLIEEIKNYRNDIKCVLENFNTN---NRIFDTYIGASTID-PG 191 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S+ + ++ + + + ++V Sbjct: 192 SVDG----------------------QTFNQICLVYEVIINKSTTEERLKQTRKLALKEV 229 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E + + + + E + + +N ++ID L+ + ++++ +E+ K++ + K Sbjct: 230 EIMNK-YNMIKVFQEQEMIIEGVLIEMNYCNEFKIDDKLLNEQRKVLIEEQNKIEIE-TK 287 Query: 227 LTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 G + ++ L GID V T K ILS S L+L S Sbjct: 288 KIIGKTINLSSPEQVKKELIRYNIGIDGVKKKATTDKKILSQSGHPF--AKLVLEYRKIS 345 Query: 286 GSAILKLNTLSEAVSSDG---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + G +R + TGR Q +P+Q S + Sbjct: 346 KLLSGVIEQIRRCCIKTGDEYFIRTKWSQTAIT-TGRIQSKNPNLQQIPKQAFSLQQFVV 404 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R I N V D IE R+LA + I+ F Sbjct: 405 IP--------------------RDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFF 444 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + DI+ A ++ ++ +R K + G+ Sbjct: 445 KSNIDIHKLIAAHWLKKNVNDITDGERRKAKTIVYGCI--------------YGIGPFSL 490 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + + +++ + + + Sbjct: 491 ADQLH------------------------------ISLDESKTFLESFLDQFPSFKKWKE 520 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ + + RR N T Sbjct: 521 EIITNASTTGFVHTINNRRRRINNL----------------------------------T 546 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 +S + +Q + DI+ M K G ++L +HDEIV E Sbjct: 547 DSSDKKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEV 606 Query: 637 PDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD V TL LM +PL K++ Sbjct: 607 PDHLLDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKW 642 >gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei TREU927] gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei] gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 958 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 85/678 (12%), Positives = 167/678 (24%), Gaps = 175/678 (25%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + V ++ + + + L V V N+ + + ++ Sbjct: 323 DDVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLPLLSYKQGKFFTSCVSDVRLM 380 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + + + G L A CKGS ++ Sbjct: 381 TWMLEPSADTAEFADYDKL-LQSYQQQIGLPAGLNAAECKGSKEAV-SHRVFYMEPLYRM 438 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L+G L E+ + ++ + G+ ++L V + A++ Sbjct: 439 LYGR---------LGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKM 489 Query: 218 KKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDL------------------VDMSE 258 +KL + + + + R+ L+ + + + Sbjct: 490 EKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGK 549 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DG---------- 303 T + L +++ + + E DG Sbjct: 550 LSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQ 609 Query: 304 -----------------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------------ 334 +L L G + TGR + Q LPR Sbjct: 610 GKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTN 668 Query: 335 --------RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 E+ +R C+ A +G LV D +E Sbjct: 669 DADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGAPDGYSLVSLDYEQVEL 728 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA ++G+ I DI+ + F V+ E+R++ K + + Y G Sbjct: 729 RVLAHLSGDSALINVLTKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP- 785 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 A + + V Sbjct: 786 -------------------------------------------RGLAQQMGVSVEQALRV 802 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +++ V + + + D + S R Sbjct: 803 SSLFKSCFPTVDAYQRRIIDQCR--------------------------SDGSVRTLSGR 836 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 D+ T S R+ +VQ + D++ GM + Sbjct: 837 VRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADVMKLGMIAVEREVLQPHA 887 Query: 621 -GYDIVLTVHDEIVSETP 637 ++L VHDEI+ P Sbjct: 888 PDVRLLLQVHDEIILSVP 905 >gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 25/237 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + + Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL- 114 +E + V N ++ I+ + G + T + L + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY-GAVVKG-PLFDTMIAHYVLQPELRHGMDYLAEI 484 Query: 115 ALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L++ G K + + D P D A + E Sbjct: 485 YLHYQTIHIDELIGPKGKNQKNMR---DLDPKDVYLYACEDADITLKLKNVLEKELKEND 541 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +RL D E L + I G +D + + + + ++++++ Sbjct: 542 AERLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKENTTNWPV 596 >gi|20095249|gb|AAL85287.2|AF465603_1 polymerase [Vibrio phage 1] Length = 786 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 78/592 (13%), Positives = 151/592 (25%), Gaps = 102/592 (17%) Query: 15 PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDLLQYLRDETVM 67 L VG ++ I ++ + L E + + L E V+ Sbjct: 157 DLETVGFDYVSKDRFIVSAQFSHREGYSDLVRFYSTEDQPKEGDLLHDQIKWLLNSEMVI 216 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 N ++ K I+ + + T+++ S +LN L Sbjct: 217 MCGANFKYDLNWIKYKWNIECTNFKL-DTTLVGSLLNENRS-----NSLNTHAKLFTDLG 270 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE--- 184 G D + + Y D +AT + + Sbjct: 271 GYD---------DDLNNIYDKGRMDLIPDENLLPYAGGDTDATLRVRNHFARELQQDPWL 321 Query: 185 --------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + G +++ + + L E + QE+ + ++V + Sbjct: 322 TNFYVNLLHPASRAFEKMEQNGVKVNGEKLKTLGEELEQEKNQYLREMVDMMPATACPEV 381 Query: 237 QTYAL-------RMYLFLITGI-----------DLVDMSEGTLKSILSHSNITQLAKDLI 278 + YLF G+ ++ L + A I Sbjct: 382 PEAKPVIKAAIGKDYLFGARGLGLKPIMVNEKNKEPLTNKSHLNNF-DDPKKYPEAHKFI 440 Query: 279 LN---RLASSGSAILKLNTLSEAVSSDGRLRGTLQ-FYGA-----------SRTGRWSGC 323 + + DG + F GA + TGR + Sbjct: 441 QLGNKWNQADKAQGTYCTGFLRHQREDGYFHPSYMLFKGAFDNDKGTDDSGTVTGRLAAK 500 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 Q LP+ + +R+C G +V D + Sbjct: 501 DPAIQTLPK------------------------KTSLAKRLRACYEPPEGYSIVEIDFSQ 536 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV----------SKEQRAIGK 433 E R L +A E KA+ G D++V + +++ K+ R GK Sbjct: 537 GELRRLCGMANEPAMKKAYREGLDLHVISGGATAGLSYEQMQELEKTDAALYKKYRNYGK 596 Query: 434 VMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 L Y F+ A G+ L + F+ + + H ++ Sbjct: 597 PQNFGLLYGMSWGGFQQYAKDQYGVLLSDKEAQNMRFNFFDTYARLPDWHEETKEFARVN 656 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 +G L + + G + + R Sbjct: 657 GYIRSPLGRVRHLPLINSFDNFYKSQAERQAVNSGVQSTLSDLLIYGMARFR 708 >gi|40807290|ref|NP_047956.2| gp11 [Streptomyces phage phiC31] gi|579076|emb|CAA53907.1| unnamed protein product [Streptomyces phage phiC31] gi|40313247|emb|CAA07135.2| gp11 [Streptomyces phage phiC31] Length = 617 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 94/710 (13%), Positives = 168/710 (23%), Gaps = 178/710 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 +L +D ET G+ Y+ + + + L+ Sbjct: 36 ELALDTETT--------GLAMYSSGYKLRTVQFGT-AHEAWVIHYELGGRFAEAADYVLK 86 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSK--RWICTSVLARTNGL--------PSSLKNA 112 + HN+ F+ ++ + + S R + T + A + LK Sbjct: 87 HCPRFLI-HNAPFDWLVLDAHTPVSMESLAPRTVDTKIKATLIDPRQPQDGGIGTGLKPL 145 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + +G G + H + Y DV T Sbjct: 146 SAFY--VDPSAPDTQGDLTAVFRSLGLTKETGWAGIDLRHP----TYNLYAGLDVIYTAR 199 Query: 173 LFKRLIPL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L L + E ++ + + G +DL+ V L+ ++ +E ++ Sbjct: 200 LNPCLDAEHARLSIRPTLLEYEHEIAYMCAYMQRAGLALDLEYVDTLRRMLREEE---EK 256 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSH------- 267 + + S + L L G L + + L + Sbjct: 257 HLYAAAMWGVDSVNSGAQVAEAL-LAMGETLTQRTDGGALKVDKAVLLPLADLDRDWERI 315 Query: 268 -SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + + +L + + + GR+ + A F Sbjct: 316 GAREPNPLAEAVLRAKRAGKWVTTYADRFANNHDPHGRIHPNINTLQARTGRMSINGDFA 375 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 Q LP + +R I+ + D IE Sbjct: 376 AQTLPSSDW---------------------------MIRRAIVGDAPDHIMGSVDFQAIE 408 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A F NG + A + +K R + K Y GG Sbjct: 409 MRVLAALADVKRMKDGFVNGGSDFDIHMYTAQLIKGLEATKRDRKVFKGAGFGKVYGGGV 468 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 A + Sbjct: 469 ATI--------------------------------------------ARQTGATEAEIAR 484 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + S++ Sbjct: 485 AVAEYDRVFPEIKRASSRWQREARGTGLVTVSVT-------------------------G 519 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623 RRL R RTY + Q+ +RD+L + M N G Sbjct: 520 RRLPLD-----------------RNRTYA--VVNYQCQSAARDVLGQAMLNMRDAGLLDY 560 Query: 624 IVLTVHDEIVSETPD-TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + L +HDEIV P M G+P+ A+ R Sbjct: 561 MKLPIHDEIVFSAPKADAKDIAREFEKCM--TMDL-FGVPVVADADLGGR 607 >gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7] gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11] Length = 267 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 92/209 (44%), Gaps = 33/209 (15%) Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG---------------SISARRVA 544 C+ +K+ WR H + W+DL +G V+ G +I R Sbjct: 59 WRTCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTT 118 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDV------------------KGDCSYLNTATSQ 586 + + + LPS R L Y + + N T Q Sbjct: 119 EIDSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQ 178 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 T+GGK ENIVQA RD+L M NA GY IVL+VHDE+V ETPDTP ++V Sbjct: 179 WTTLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAE 238 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L LM P WA+G PL AEG E KRY K Sbjct: 239 LEKLMCALPEWAEGFPLVAEGAELKRYAK 267 >gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5] Length = 124 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S PL K GV+ Y E I L AY+ D++PV++ D +P ++L Sbjct: 1 MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNA 112 L DE V+ A N+ FERI + LG + + W C+ + + T GLP SL+ Sbjct: 61 LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118 >gi|224011788|ref|XP_002294547.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] gi|220969567|gb|EED87907.1| hypothetical protein THAPSDRAFT_270013 [Thalassiosira pseudonana CCMP1335] Length = 745 Score = 154 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 59/389 (15%), Positives = 101/389 (25%), Gaps = 94/389 (24%) Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L +L R+ +L + TGR S QN P E+ Sbjct: 428 FLTSLQTLADDQNRVHCSLNIN--TETGRLSSRKPNMQNQPALEKD-------------- 471 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +AS G L+VAD +E R+LA + I AF G D + Sbjct: 472 ----------KYKIRQAFMASPGNNLIVADYGQLELRLLASMTDCTSMIDAFEAGGDFHS 521 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T F D V A + + Sbjct: 522 RTALGMFKYIQDAV--------------------ANGDVLLEWDYSKGEPPKPMLKDQYA 561 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + + + + + E + +AW V + ++ + Sbjct: 562 SERRKAKTLNFSIAYGKTAHGLSQDWGVSLKEAEEMLRAWYDSRPEVEKWQQNTKKAARN 621 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + R + R Sbjct: 622 YGITRTLM--------------------------GRYRHLPHAMEGNNRKR--LGHAERA 653 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETP-DTPYFS 643 +Q + D+ M K G+ +++ VHDE++ E P +T + Sbjct: 654 SI------NTPIQGGAADVAMMAMIKINDSLLLKKLGWILLMQVHDEVILEGPEETAEEA 707 Query: 644 VGTLCSLMTKNPSWAKGL-----PLKAEG 667 + M + W GL PL +G Sbjct: 708 FEEVVKCMQEP--WVLGLDKTKVPLLVDG 734 Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 95/315 (30%), Gaps = 46/315 (14%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVK--LWD-RTEQSAM 53 D E L +VG +T + Y D P D + + Sbjct: 35 ACDTE-VMDIDLKEVGP---VGHGYVTCISVYSGEDFDYGLGDGPGTMLWIDNLDDAKDL 90 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLK 110 + +L D VM V HN F+R + GI++ T +AR + + SL+ Sbjct: 91 LQEFKPWLEDAKVMKVWHNYGFDRHVLFN-EGINVLGFG-GDTMHMARLSDTSRMKYSLE 148 Query: 111 NACLA-LNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + K G + + P + + + +Y D + Sbjct: 149 SLTEDLLKQRKVPMKEIFGVPRLRKDGTDGAIVDIPPVEVMQRDPKFRESWIKYSAMDAK 208 Query: 169 ATRELFKRLIPLSDG----------------ERDLWLLDQTINDRGYRIDLDLVL----K 208 +T L++ L R L + RG + D + + Sbjct: 209 STYNLYQHLKKELLKVGWIRQMNMMQYYQLHMRPFGELLTDLERRGMLVAKDYLADVEVQ 268 Query: 209 LQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 ++ + + K DG+ + + L +LF G + E T K + Sbjct: 269 ARKDREGHVEAFRQWAFKQLGPDGLAMNLASSVQLTTFLF--GGAENAKTKEPTEKVRVF 326 Query: 267 HSNITQLAKDLILNR 281 + + D + Sbjct: 327 KTAREDIPDDAMEAY 341 >gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum] gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum] Length = 489 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 70/544 (12%), Positives = 149/544 (27%), Gaps = 113/544 (20%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 Y + + RE K + E + + + G + + + LI ++ + LD Sbjct: 3 YYIQSLHIQREDNKFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYLD 62 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS-------------ILSHS 268 L G S + LF I ++++ T + +L Sbjct: 63 YKAHVLLPGKTFSLSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQI 122 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-----RLRGTLQFYGASRTGRWSGC 323 N +I + ++ L + + R+ T+Q TGR + Sbjct: 123 NHYHPLPSIISEYRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVP-TGRIAME 181 Query: 324 VFQPQNL--PRQERSEEILTQTIQALNRGETIADPLGLASDC------------------ 363 QN+ P + + + +++ D SD Sbjct: 182 NPNLQNISHPIDFKRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITVS 241 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA--FANGEDIYVTTYAKAFNTPI 421 +R+ I +NG KL+ D +E R+L ++ + ++ DI+ + N P Sbjct: 242 IRNAFIPANGCKLLSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIPY 301 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D V+ R K + + Y G K + L + K + + + + + Sbjct: 302 DSVTDSDRQQAKHLVYGILYGMGIKSIASE-----LHIPIEQARGKLENFKKTYNKLIEY 356 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++ + L G ++ + + Sbjct: 357 LEMVEENVIQNGYIATLFGRVRNFSNIHS-------CKIDNNEISKVKRAARNSIPQGTA 409 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 ++ ++ + + Sbjct: 410 ADIA---------------------KMAMIKIQDELDKNH-------------------- 428 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKG 660 M L +HDEI+ E P+ + + M + Sbjct: 429 --------FKAQMI----------LQLHDEILFEVPENELYQSAQIIKYSMENVVKLSVS 470 Query: 661 LPLK 664 LP+K Sbjct: 471 LPIK 474 >gi|303274755|ref|XP_003056693.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461045|gb|EEH58338.1| predicted protein [Micromonas pusilla CCMP1545] Length = 912 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 96/387 (24%), Gaps = 87/387 (22%) Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 GR+ L + TGR S QN P E+ Sbjct: 599 NLRGKTGRVHTALNIN--TETGRLSARRPSLQNQPALEKDRYG----------------- 639 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R G LVVAD +E R+LA +AG +AF G D + T Sbjct: 640 -------IRKAFTCRPGNILVVADYGQLELRLLAHMAGCASMREAFEAGGDFHSRTAMGM 692 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 KE R + L Y + + + ++ Sbjct: 693 --------YKEIREAMDEGKCLLEYGSEGYDED--------EANRPALVKDMFASERRKA 736 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + + + A + E W + V + + + Sbjct: 737 KVLNFSIAYGKTAHGLAKDFGVSTKEAEDTVNLWYSDRPEVRAWQEVQHANATKLGKVST 796 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + R + + Sbjct: 797 LL--------------------------GRHRNLPEASSRDEMRRQHALRAS-------- 822 Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649 +Q + DI M + GY++++ +HDE++ E P+ + Sbjct: 823 -INTPIQGGAADIAMLAMMQIHRCPRLKEIGYELLMQIHDEVILEGPEEHKDEALALVKR 881 Query: 650 LMTKNP---SWAKGLPLKAEGYEAKRY 673 M + L +G AK + Sbjct: 882 HMENPFNDHENLCDVDLNVDGNYAKTW 908 >gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] Length = 290 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 93/179 (51%), Gaps = 11/179 (6%) Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 C++ K+AWR H + W+ L + + + ++ + + + L Sbjct: 116 CDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRL 170 Query: 563 PSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 PS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 171 PSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPA 230 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 231 IETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 289 >gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei] Length = 343 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 102/367 (27%), Gaps = 61/367 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + D W ++ A+ ++ L +L D + + LG Sbjct: 22 ADLIGFYIGAPDH----WYVSDDVALLAEPVLKDWLEDASHPKAVFGVK-RTQVAANRLG 76 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + + + ++ + N E + ++ Sbjct: 77 VHLAGVDF-DLLLASYLLNTTNNSNDLGTVANLHE-------------YQNVQTDEAVYG 122 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTIN 195 + L ++ + A L +L D E L L+ + Sbjct: 123 KGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQME 182 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G R+D + ++ +Q K L+E + G + L + LF G+ +V Sbjct: 183 ITGIRVDASRLQQMGSEFSQTLKILEEKVYAEA-GETFNINSPKQLGVILFEKMGLPVVK 241 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T +L IL+ + + L +++ D ++ Sbjct: 242 KTKTGYSTAVDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGLLKSIHQDNKVHTRYLQT 301 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371 ++TGR S QN+P +R + Sbjct: 302 -LTQTGRLSSVDPNLQNIP------------------------VRLAEGRKIRQAFVPSH 336 Query: 372 NGKKLVV 378 ++ Sbjct: 337 PDWQMFA 343 >gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS] gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica HM-1:IMSS] Length = 657 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 91/639 (14%), Positives = 176/639 (27%), Gaps = 148/639 (23%) Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW------ICTSVLARTNGLP 106 + +LL + + + + +N + E I + + T + A T Sbjct: 140 LKKELLPEIINSRRLIIVYNLMEEIK--NYRNNIKCILENFNTNNTIFDTYIGASTIDPG 197 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S +GK + ++ + + ++ Sbjct: 198 S------------------VDGKTFSQICLVYEVI-----INKSTIEERLKQTRRLAVKE 234 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTIND-RGYRIDLDLVLKLQELIAQERKKLDEDIV 225 VE + + E + + +N ++ID L+ + ++ + +E+ K++ + Sbjct: 235 VEV-MNNDNMIKVFQEQEMIIDGVLIEMNYCNEFKIDNKLLNEQRKKLIEEQHKIEME-T 292 Query: 226 KLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 K G + ++ L GID + T K ILS S+ L+L Sbjct: 293 KKIIGRTINLSSPEQVKKELIRFNIGIDGIKKKATTDKKILSQSDHPF--AKLVLEYRKI 350 Query: 285 SGSAILKLNTLSEAVSSDG---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S + + + G +R T A TGR Q +P+Q S Sbjct: 351 SKLLSGVIEQIRKCCIKSGDEYFIRTTWSQT-AIVTGRIQSKSPNLQQIPKQSFSLPQCL 409 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R I N V D IE R+LA + I+ Sbjct: 410 IIP--------------------RDLFITHNNNTFVAIDYNQIELRILADFTKDHHLIEF 449 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F + D++ A ++ ++ ++R K + G+ Sbjct: 450 FKSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCI--------------YGIGPFS 495 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + + + +++ + + Sbjct: 496 LADQLH------------------------------VSLDESKAFLESFLDQFPAFKKWK 525 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 ++ + R+ D V S R Sbjct: 526 EETITNASTTGFVHTI-----NNRRRRINNLTDCNDKKTVAESKRI-------------- 566 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 + +Q + DI+ M K G ++L +HDEIV E Sbjct: 567 ---------------AVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLE 611 Query: 636 TPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 PD V TL LM +PL K++ Sbjct: 612 VPDHLLDEVCVTLKHLMEHIVK--LEVPLVVTVETGKKW 648 >gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei] Length = 958 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 84/678 (12%), Positives = 166/678 (24%), Gaps = 175/678 (25%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + V ++ + + + L V V N+ + + ++ Sbjct: 323 DDVIVYSAAVGLELLVRVAEEL--PGVEIVTFNAPCLLLPLLSYKQGKFFTSCVSDVRLM 380 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + + + G L A CKGS ++ Sbjct: 381 TWMLEPSADTAEFADYDKL-LQSYQQQIGLPAGLNAAECKGSKEAV-SHRVFYMEPLYRM 438 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L+G L E+ + ++ + G+ ++L V + A++ Sbjct: 439 LYGR---------LGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEVDGFKARCAEKM 489 Query: 218 KKLDEDIVKLTD-GIIRSSRQTYALRMYLFLITGIDL------------------VDMSE 258 +KL + + + + R+ L+ + + + Sbjct: 490 EKLRSEARSMIPSMTNFNIQSADDCRVALYEVLKLGPNLVSKGTEGSTENNSLILTRGGK 549 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS----DG---------- 303 T + L +++ + + E DG Sbjct: 550 LSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFMEMAIPIEEGDGEFTDFSISEQ 609 Query: 304 -----------------RLRGTLQFYGASRTGRWSGCVFQPQNLPRQE------------ 334 +L L G + TGR + Q LPR Sbjct: 610 GKEAIPNASDRHKAKWAKLHPNLVQEG-TETGRLTSVEPNMQALPRSTQLVATHEKNNTN 668 Query: 335 --------RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 E+ +R C+ +G LV D +E Sbjct: 669 DADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRCLGVPDGYSLVSLDYEQVEL 728 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA ++G+ I DI+ + F V+ E+R++ K + + Y G Sbjct: 729 RVLAHLSGDSALISVLTKSGDIHRSIAEIIFRKT--SVTGEERSLAKKVVFGILYGAGP- 785 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 A + + V Sbjct: 786 -------------------------------------------RGLAQQMGVSVEQALRV 802 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +++ V + + + D + S R Sbjct: 803 SSLFKSCFPTVDAYQRRIIDQCR--------------------------SDGSVRTLSGR 836 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 D+ T S R+ +VQ + D++ GM + Sbjct: 837 VRSIPDINDRVL---TKRSHAERQA------FNTVVQGSAADVMKLGMIAVEREVLQPHA 887 Query: 621 -GYDIVLTVHDEIVSETP 637 ++L VHDEI+ P Sbjct: 888 PDVRLLLQVHDEIILSVP 905 >gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c] gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c] Length = 312 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 108/261 (41%), Positives = 147/261 (56%), Gaps = 5/261 (1%) Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 W F EY +RDV A R++ KRL + E LW LDQTINDRG ID DLV Sbjct: 1 MDWAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIG 60 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + ++ L + LT G ++++ Q AL +L G+ L DM + T+ + + Sbjct: 61 AVERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPALP 120 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLP Sbjct: 121 ETVRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 332 RQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 R S+E++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRV 240 Query: 389 LAWIAGEDWKIKAFANGEDIY 409 LAW+AGE K+ AF + Sbjct: 241 LAWLAGETPKLHAFREFDTCQ 261 >gi|294887455|ref|XP_002772118.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] gi|239876056|gb|EER03934.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] Length = 940 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 61/415 (14%), Positives = 113/415 (27%), Gaps = 97/415 (23%) Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L R++++ +++ L+ L E + DG R + TGR QN Sbjct: 604 LWHLQRSIRISAAITSV--LSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNP 661 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R A G L+V D + +E R+LA Sbjct: 662 PSAHNDLY------------------------SIRKAFSARPGNTLIVGDYSQLELRILA 697 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ + I+ G DI+ F + V+ I Sbjct: 698 HMSRCESMIRQLNQGGDIHSQCAVDLFPEVAEAVANGSVVIDDAEAH------------- 744 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 ST + + + A + L T + W Sbjct: 745 ---------PGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTRW 795 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 +GV + ++ + + R + Sbjct: 796 NNSKKGVERWKAEIIQQARDTQHATSVL--------------------------GRHRRF 829 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDI 624 +K L + + R ++Q + DI M + G+ I Sbjct: 830 PHIK---HRLRKYSGRSERAA------VNFVIQGSAADIAMMAMLRVDRDERLRRMGFKI 880 Query: 625 VLTVHDEIVSETP-DTPYFSVGTLCSLMTKN-----PSWAKGLPLKAEGYEAKRY 673 V+ VHDE++ E P + +V + LM P + + L + + Sbjct: 881 VMQVHDEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 935 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 12/109 (11%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLC-AYA-----WDDEPVKLWDRTEQSA-MPSDLLQ 59 D E L + + A+ + P+ D S + Sbjct: 150 DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 206 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 Y + + HN + + GI + T LAR S Sbjct: 207 YFENPAKRKIFHNFAADAHVLYGH-GITVRGLE-ADTRYLARLFDSSLS 253 >gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 205 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 93/179 (51%), Gaps = 11/179 (6%) Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 C++ K+AWR H + W+ L + + + ++ + + + L Sbjct: 31 CDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAWLRLRL 85 Query: 563 PSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 PS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 86 PSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMPA 145 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 146 IETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 204 >gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 377 Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats. Identities = 108/261 (41%), Positives = 148/261 (56%), Gaps = 5/261 (1%) Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 W F +Y +RDV A R++ KRL + E LW LDQTINDRG +D DL Sbjct: 1 MDWAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIG 60 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + ++ L E LT G+++++ Q AL +L G+ L DM + T++ L + Sbjct: 61 AVERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLP 120 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLP Sbjct: 121 ETVRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLP 180 Query: 332 RQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 R S+E +T I A+ G D + L S +RSC+IA KKLVVADL+ IE RV Sbjct: 181 RPTLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRV 240 Query: 389 LAWIAGEDWKIKAFANGEDIY 409 LAW+AGE K+ AF + Sbjct: 241 LAWLAGETPKLHAFGEFDTCQ 261 >gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis] Length = 1661 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 76/535 (14%), Positives = 139/535 (25%), Gaps = 119/535 (22%) Query: 164 KRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 AT L+ ++ + E + I G ++DL + + + Sbjct: 1197 CFQSAATNVLYPKIFEILKKKNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCL 1256 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD------------MSEGTL 261 + + E G S + LF + D T Sbjct: 1257 KNKLNE-LEAEAAKEAGHRFSLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTA 1315 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE-----------AVSSDGRLRGTLQ 310 K +L + +IL S + + L S+ R+ G Sbjct: 1316 KHVLENLAQLHPLPGIILEFRQLSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYD 1375 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 +Y A TGR Q +P+ + P G + +R +A Sbjct: 1376 WYTA--TGRLIMHEPNLQIVPK-------------------FLEIPNGNNTLHIREIFVA 1414 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 S G L+ AD + +E R+LA ++ + IK D++ AK + V++ QR Sbjct: 1415 SEGCTLLSADFSQLELRILAHLSNDSKLIKILKEKIDVFTEIAAKMNSIDRSAVNEIQRN 1474 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + AL Y K L + + + + + ++ Sbjct: 1475 RAKQICYALIYGMCPKSLAAE-----LGTDEEQAIQFYNNFKKLFPDVTRWLIETTEKCR 1529 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 L + + L Sbjct: 1530 SRGFCVTLANRVRY---------FAAIRSSATSDKLHAERQAINTTVQGSASDIFKIALR 1580 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 L D +N A Q ++ Sbjct: 1581 KVY--------------LALDDYTKKNGQMNNA-------------------QTLA---- 1603 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664 I+ +HDE++ E ++ +V T+ M S LP++ Sbjct: 1604 ------------KIIFQIHDELMLEVTNSNVEAVATIVKHSMETAVSLRVDLPVR 1646 >gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 201 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 35/236 (14%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L V + + T ++ TGR S QN+P Sbjct: 1 TDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIP-------------------- 40 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ Sbjct: 41 ----VRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAM 96 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T ++ F P++ + E R K + + Y L +++ Sbjct: 97 TASEMFGVPVEGMPGEVRRRAKAINFGIIYG-----ISAFGLANQLSIERSEAGDYIKKY 151 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 FE + + + + + + G +++ V L L Sbjct: 152 FERFPGIRDYMESRKAMARDKGYVETIFGRRI------NYSRNPLVQSLRARLQRA 201 >gi|158425221|ref|YP_001526513.1| DNA polymerase [Azorhizobium caulinodans ORS 571] gi|158332110|dbj|BAF89595.1| DNA polymerase [Azorhizobium caulinodans ORS 571] Length = 609 Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 82/558 (14%), Positives = 145/558 (25%), Gaps = 102/558 (18%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWDRTEQSAMPSDLLQ 59 MS L DIET + A DD P LQ Sbjct: 1 MSHLIFDIETNGLLDATNRVHCLCIKDADTGQVWSCTDDGPTGTYIPIERG-------LQ 53 Query: 60 YLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LN 117 L D V+ + HN F+ +K P T V +R + Sbjct: 54 LLADAEVL-IGHNILKFDIPALQKVYPWWKPKGVLRDTIVCSRLIWPK---DDLRERDFR 109 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAW----QLFGEYCKRDVEATR 171 + GK + ++++ Y + ++ W Q +YC++DVE T Sbjct: 110 LQKQ------GKLPGNLIGRYALEAWGYRLGEYKGDYKGPWDVWSQEMQDYCEQDVEVTF 163 Query: 172 ELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L++++ + E + + G+ D L + Q + +L+ ++ Sbjct: 164 RLYQKIKEKGWKEESIELEHRVQWIIHRQEQYGFLFDQAKAASLYADLVQRKTELEAELQ 223 Query: 226 --------KLTDGIIRS---------------------SRQTYALRMYLFLITGIDL--- 253 + + + L G + Sbjct: 224 SAFPPWEVESVFVPKVNNRVRGYVKGVPFTKRRTIHFKPSSRDHIAGRLKAKYGWEPSEF 283 Query: 254 -VDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGTLQ 310 + + +LSH AK L + + V +DGR+ G + Sbjct: 284 TDEGKPKVDEDVLSHLPYP-EAKLLSEYLMVEKRLGQIATGKEAWLKHVKADGRIHGDVT 342 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA TGR + +P R +A Sbjct: 343 TNGA-VTGRMTHSKPNIAQVPGNG-----------------------SPYGHRCRELFVA 378 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + K LV D +E R LA + + R Sbjct: 379 AKRKLLVGCDADALELRCLAGYMARYDGGAYVRTVLEGKKELGTDMHTLNAKAL-GCSRD 437 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---- 486 + KV A Y G T+ L + + + + +A + Sbjct: 438 VAKVWFYAFIYGAGDFKLGTI-----LGAPKGEEQKWGRRSRARFLKALPALGTIIKKVQ 492 Query: 487 DQYPEFAVKDKLIGTACE 504 ++ + L G Sbjct: 493 EKVQKKGFLRGLDGRELR 510 >gi|299116518|emb|CBN74706.1| pol1-like DNA polymerase [Ectocarpus siliculosus] Length = 1473 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 97/373 (26%), Gaps = 88/373 (23%) Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L L E V R+ +L + TGR S QN P E+ + Sbjct: 1155 SNFLQPLQELVDEKSRVHCSLNLN--TETGRLSARKPNLQNQPALEKDQY---------- 1202 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ A G LVVAD +E R+LA I I AF G Sbjct: 1203 --------------KIRAAFRAEEGNTLVVADYGQLELRLLAHITDCKSMITAFKEGGCF 1248 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + T F+ + V K + + Sbjct: 1249 HSRTAVGMFDHVKEAVDKGEVL--------------------LEWDYSKGEPPKPLVKDV 1288 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 ++ + + + + E + KAW A V + K + + Sbjct: 1289 FASERRQAKTLNFSIAYGKTGHGLFKDWGVTLKEAEDLVKAWYADRPEVKRWQKQVIQNA 1348 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 R D+ + ++ Sbjct: 1349 KDTG--------------------------FSRTLMGRYRKLPDITSNDRGKVGHGTRA- 1381 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPY- 641 +Q + D+ M + G+ ++L VHDE++ E P+ Sbjct: 1382 --------AINTPIQGGAADVAMVAMIGIVRSPLLKKLGWKLLLQVHDEVILEGPEESAK 1433 Query: 642 FSVGTLCSLMTKN 654 ++ M + Sbjct: 1434 EALAETVRCMQQP 1446 Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 81/304 (26%), Gaps = 55/304 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA--------YAWDDEPVKLWD-RTEQSAMPS 55 D E S L G +T + + + D + Sbjct: 650 ACDTE-VSEINLKDHGP---VGHGRVTCISIYGGPDLDFGEGPGKILWVDNLGAAAGTLE 705 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWI-CTSVLARTNGLPS--- 107 + L + E V HN F+R + + I + T +AR Sbjct: 706 EFLPFFASEKHKKVWHNYGFDRHVMFNSPDNREEQRIDCVGFAGDTMHMARLWDTSMEKY 765 Query: 108 ------SLKNACLAL---NFSEHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQ 157 SL+ L L + K G + + + P + Sbjct: 766 AGDTGFSLEALSLKLLGEGQRKTPMKELFGIPKLKKDGTPGNLLVLPPIDEIQTRPEVRP 825 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE-----------RDLW-----LLDQTINDRGYRI 201 F EY D +AT + + L+ +++ L + G + Sbjct: 826 RFIEYSAYDAQATWLVHRELMQKLREMSWKDGMTMLDFYEMYYVPFGELLTDMERTGIYV 885 Query: 202 D-LDLVLKLQELIAQERKKLDEDIVKLTDG-----IIRSSRQTYALRMYLFLITGIDLVD 255 + D + ++ ++KK +E + + + ++ LF G Sbjct: 886 EAKDYLQDIEVQARNDKKKAEETFLNWVKKIQPGAETLNPSSSTQIQTLLF--GGATNPK 943 Query: 256 MSEG 259 E Sbjct: 944 TKEK 947 >gi|145350924|ref|XP_001419843.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580075|gb|ABO98136.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 460 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 68/513 (13%), Positives = 135/513 (26%), Gaps = 123/513 (23%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY-- 239 + E + D + + + KKL+E + ++ SS Sbjct: 2 EIEMPFVAPIVAMQTVRIPFDARKMREEMATMDDRLKKLEEYALTQKWIVLDSSVSIARR 61 Query: 240 ------ALRMYLFLITGIDLVDMSEGT-----LKSILSHSNITQLAKDLILNRLASSGSA 288 L+ L+ + ++ + L+ + SN +I +R Sbjct: 62 ALTNNTYLQDRLYKHLKLTPPPGAKTSIDANNLRKLYEQSNHPFPL-LIIEHRSVFKRR- 119 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 +T+ + D R+R ++ GR + +L + Sbjct: 120 -GFADTILGMYADDSRIRYSIFQTN-HDCGRLAHSEPNFHSLAHDMTCGDQ--------- 168 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED- 407 L +RS + K V AD + +E R++A +G+ I N E Sbjct: 169 -----FYGLDAPKISIRSAFVPPAAKVFVRADYSQLELRIMAHFSGDRTLIHMLQNPEPN 223 Query: 408 -----IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + +K + D V E+R K + L Y G Sbjct: 224 NLKDDPFTMLASKWYRKAPDTVLAEERTNCKNLVYGLLYGSG------------------ 265 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + A ++ A + +++ +++ Sbjct: 266 --------------------------AKKLASDLRMCEEAAKSEVARFKSMLPRLMEWLD 299 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + K + S+R + D+ N Sbjct: 300 GIVIRARE-----------------------EKPIARVTTISARHRYFPDLHSKN---ND 333 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--------NGYDIVLTVHDEIVS 634 + R+ + Q + DI + +VLTVHDE V Sbjct: 334 DRAAAERQA------VNTVCQGSAADIFKTAVVRVIDTLRTKYLIERCQLVLTVHDECVF 387 Query: 635 ETPDTPYFSVGTLCSL-MTK-NPSWAKGLPLKA 665 E ++ + M + +PL Sbjct: 388 ECDARSAKAIAQIVRHAMESVANEFNLAVPLPV 420 >gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] Length = 681 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 112/380 (29%), Gaps = 50/380 (13%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 A + + + + D + + L + L D+ + + + ++ LG Sbjct: 337 AQYAGFSVKIK-QKIYVCD---DVTLLQETPLKKILEDKNIAKQVFDLKRNYVGLQR-LG 391 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNAC----LALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + + ++ + F ++ GK Sbjct: 392 ITLFNVT-DDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGKGKKQ-HSVDVDT 449 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + T+ + + + + + ++L + E + ++ + G ++ Sbjct: 450 LYAHMATKVDVLDKLKA-------KIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKV 502 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 ++K++ + L I +L + L + LF + ++ Sbjct: 503 QATTLVKMKNDLDVRITDLKNKIYQLAGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGY 561 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L IL+ S +N L + + +DG++ + TG Sbjct: 562 STSVDVLEKLEYQSPIVADILDYRQISKIQSTYINGLLDYIQADGKIHTRFLQT-LTTTG 620 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R + L Sbjct: 621 RLSSVEPNLQNIP------------------------VKLEEGKQIRKAFVPCKQDSYLF 656 Query: 378 VADLAGIEARVLAWIAGEDW 397 D + +E RVLA ++ E Sbjct: 657 SCDYSQVELRVLAHVSHEKN 676 >gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 607 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 75/629 (11%), Positives = 157/629 (24%), Gaps = 161/629 (25%) Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + K + F + A EY + Sbjct: 56 HIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDSDYAVQHYEYWSQIAAQIPRY 115 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L + E + + G D +L + ++ +++ E I ++ Sbjct: 116 EEWLHKI---EMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIMQEQAAERIKQIAKETFN 172 Query: 234 S------SRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSN--------------- 269 S +T ++ +F I + L Sbjct: 173 IDINTGKSGKTNEVKSLMFDYLKIPIAKYGKTGASLDQEALIDMAFMLENKLNDIDEEKY 232 Query: 270 ---------------------------------ITQLAKDLILNRLASSGSAILKLNTLS 296 K+ L + LS Sbjct: 233 LGVSLPENWGNIDPEKDPTLDKLERGAIRIAKREPHPYKEQALEVIDQLKKIQKYTTLLS 292 Query: 297 EAV--------SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + GR+ + + TGR + QN+PR + E Sbjct: 293 SHIIGREKYLNFMSGRIHAGYSPF--TETGRLNSFNPNGQNVPRPDNDEF---------- 340 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ + GK L D +G E R++AW +G++ I+ F G D+ Sbjct: 341 --------------KIRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDM 386 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK-TMASHCGLDLQQFSQNVK 467 + T + ++ K++R K + Y G + T + + Sbjct: 387 HRRTASVMTGKSEAEIVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQI 446 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + +++ + + + E + G + G+ + Sbjct: 447 VNAVKTAYKRIPEYQRKIVLEAREQGYVQTIYG---------YMRLLPGINSANRRDRGS 497 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + K + + + + Sbjct: 498 AERQAANTPVQGSAADIM----------------------------KKVQNEIYESIGKQ 529 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV--- 644 ++G S D++ +HDEI+ E D P V Sbjct: 530 EGVLSHG-----------SADMIA---------------QIHDEIIFEIDDDPEIVVAVE 563 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + +M + P +P++AEG R+ Sbjct: 564 KQIKQVMEQPPVPGFPVPIEAEGSVGYRW 592 >gi|331013568|gb|EGH93624.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 443 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 72/267 (26%), Gaps = 49/267 (18%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 81 AQRAQLVGLSFATQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 140 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 141 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 199 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G+Y + + T L + Sbjct: 200 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 244 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 245 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 304 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG 259 + L + L+ G+ ++ + Sbjct: 305 -NLGSPKQLGVILYEKLGMPILSKTAT 330 >gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1] gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1] Length = 618 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 110/703 (15%), Positives = 192/703 (27%), Gaps = 169/703 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS---DLLQY 60 + +D ET G+ YA A ++ L+ Sbjct: 41 VAVDTET--------CGLKIYAWGPGFLRLAQFGNETEAWALPIEHGPEYVEAAAWALRV 92 Query: 61 LRDETVMCVAHN-SLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKN-ACLAL 116 L D HN S F+ ++ + LG+ + + T +LA+ ++ L Sbjct: 93 LPD----LTGHNWSGFDALVSDEHLGVPLEVTCAKVTDTQILAKLVDPRQQMEGGIGSGL 148 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATRELF 174 + K S T + EY DV T L Sbjct: 149 KANSARYIDPTAPD-TQDGLKAVFKSLKLKITEGFAKIPLDHPTYLEYGLLDVILTSRLR 207 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 RL E + + + G +D + LQ +A + + E Sbjct: 208 PRLEATLAKLGVPKTLAVYEHRVARICAQMVRAGLVLDEEYTTGLQSDLAYDADRYSEVA 267 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI------------TQ 272 + + S+RQ A + L + K++L Sbjct: 268 LGYGVESVNSARQVSAALLDLGETLTEKTASGALKVDKAVLMALADLDRDWKPIRSREPN 327 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + D +L + + E V + GR+ +Q A RT R S Q LP Sbjct: 328 VLADAVLRSKRAGKWRSAYADNFLENVDAQGRIHPNVQSMQA-RTFRMSVTQPAVQTLPS 386 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + +R ++A G+ +V D +E RVLA + Sbjct: 387 SD---------------------------KMIRRALLADPGEVMVSVDFQAVELRVLAAL 419 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 A A A GED++ T L + G Sbjct: 420 ADVKRMKAAIAAGEDLHSFTAR------------------------LVFGDGFTDKD--- 452 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + + A + + Sbjct: 453 --------------------RKVSKGIAFGKVYGGGAATVSRQTGAPLGAVQRAMAKYDQ 492 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + V + KD G SI+ R LP R Y+ Sbjct: 493 VYPEVGRAAKDWRIEAFNNHMVGISITGHR-------------------LPLDRDRSYA- 532 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLTVHD 630 +T +VQ+ +RD L + + + + G + L +HD Sbjct: 533 ------------------------ITNYLVQSTARDCLGQALIHMDEAGLVPYLRLPIHD 568 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 E+++ P + + MT + G+P++A+ KR Sbjct: 569 EVLASVPKAEAEEISRAIAKAMTFSLR---GVPIEADAEIGKR 608 >gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1) [Caenorhabditis elegans] Length = 1661 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 78/498 (15%), Positives = 140/498 (28%), Gaps = 132/498 (26%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + I G D L I ++ + L+E+I +L G + + Sbjct: 1271 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKF-NIHSSNE 1329 Query: 241 LRMYLFLITGI--DLVDMSEG------TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + LF G+ + T K IL N IL + L Sbjct: 1330 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCL 1389 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L++ + GR+ F + TGR V QN+P++ S+ Sbjct: 1390 MPLAKFI---GRIHCW--FEMCTSTGRILTSVPNLQNVPKRISSD--------------- 1429 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R IA++ L+ AD +E RVLA ++ + + + D++ Sbjct: 1430 --------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEEL 1481 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + R K + L Y G Sbjct: 1482 SIQWN---------FPRDAVKQLCYGLIYGMG---------------------------- 1504 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + ++ E + KA+ A GV + E Sbjct: 1505 ----------------AKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKV---- 1544 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 ++ I RR S + +++ R Sbjct: 1545 ----------------------CKEEPISTIIGRR-----TIIKASGIGEERARIERVA- 1576 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT-L 647 +Q + +I + + G IVLT+HDE++ E P+ + + Sbjct: 1577 -----VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESI 1631 Query: 648 CSLMTKNPSWAKGLPLKA 665 + M S +P++ Sbjct: 1632 ENCMQNALSHLLRVPMRV 1649 >gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans] Length = 1540 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 78/498 (15%), Positives = 140/498 (28%), Gaps = 132/498 (26%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E + I G D L I ++ + L+E+I +L G + + Sbjct: 1150 LQLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKF-NIHSSNE 1208 Query: 241 LRMYLFLITGI--DLVDMSEG------TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + LF G+ + T K IL N IL + L Sbjct: 1209 VANVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCL 1268 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L++ + GR+ F + TGR V QN+P++ S+ Sbjct: 1269 MPLAKFI---GRIHCW--FEMCTSTGRILTSVPNLQNVPKRISSD--------------- 1308 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R IA++ L+ AD +E RVLA ++ + + + D++ Sbjct: 1309 --------GMSARQLFIANSENLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFEEL 1360 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + R K + L Y G Sbjct: 1361 SIQWN---------FPRDAVKQLCYGLIYGMG---------------------------- 1383 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + ++ E + KA+ A GV + E Sbjct: 1384 ----------------AKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKV---- 1423 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 ++ I RR S + +++ R Sbjct: 1424 ----------------------CKEEPISTIIGRR-----TIIKASGIGEERARIERVA- 1455 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGT-L 647 +Q + +I + + G IVLT+HDE++ E P+ + + Sbjct: 1456 -----VNYTIQGSASEIFKTAIVDIESKIKEFGAQIVLTIHDEVLVECPEIHVAAASESI 1510 Query: 648 CSLMTKNPSWAKGLPLKA 665 + M S +P++ Sbjct: 1511 ENCMQNALSHLLRVPMRV 1528 >gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus] Length = 822 Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats. Identities = 63/405 (15%), Positives = 122/405 (30%), Gaps = 53/405 (13%) Query: 65 TVMCVAHNSL-FERILFKKTL--GIDIPSKRWI--CTSVLARTNGLPSSLKNACLALNFS 119 V N+ F R + + G ++ V A + Sbjct: 314 KCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDPRVAAWLIDPSD-----------T 362 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG-EYCKRDVEATRELFKRLI 178 + K L + + Y + T +L +L Sbjct: 363 APSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILY-----DLTMDLCSKLK 417 Query: 179 PL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + + +D + + + L+ K+L+++ G Sbjct: 418 AYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAH-FVAGEQ 476 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-----------GTLKSILSHSNITQLAKDLILNR 281 LR LF + L+ + T +++L+ LIL Sbjct: 477 FLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEY 536 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ L + G + T G + TGR S Q + + Sbjct: 537 RQVHKIKSTFIDGLLAYM-KKGSISSTWNQTG-TVTGRLSAKHPNIQGISKHPIKISKPW 594 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 TI+ R+ ++S G + AD + IE R+LA ++G+ +K Sbjct: 595 NFKGKEEETVTISP---------RTLFVSSEGHTFLAADFSQIELRILAHLSGDPELLKL 645 Query: 402 FANGEDI--YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 F E + T ++ + PI++V+ R K + ++ Y G Sbjct: 646 FQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAG 690 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 22/149 (14%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 ++ ++V ++ RR + +Q R+ Sbjct: 670 VTHMDREQTKKVVYSVVYGAGYVTSILGRRRPLPRICAQDQ---QLRAQAERQA------ 720 Query: 598 TENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 +VQ + D+ M + +V +HDE++ E DT L Sbjct: 721 VNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQVPEFAALVRR 780 Query: 650 LMT-----KNPSWAKGLPLKAEGYEAKRY 673 +M + +PLK + + Sbjct: 781 IMESLQQVQTLELQLQVPLKVNLSVGRSW 809 >gi|255551068|ref|XP_002516582.1| DNA polymerase theta, putative [Ricinus communis] gi|223544402|gb|EEF45923.1| DNA polymerase theta, putative [Ricinus communis] Length = 2154 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 84/691 (12%), Positives = 168/691 (24%), Gaps = 138/691 (19%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----------DETVMCVA------- 70 I A W++ P+ + + P + LR + + Sbjct: 1506 EIHGMAICWENSPIYYVNLPKDLLCPDNQKYVLRPENWLEIVRHRWNRIGKIMGKREVIK 1565 Query: 71 --HNSLFERILFKKTL------------GIDIPSKRWICTSVLART----NGLPSSLKN- 111 N + + K + G D+ + I + + + + Sbjct: 1566 FTWNLKIQIQVLKNAVVSIHRFGSTNLSGKDLDLE-LIDS---SHLPLPQINVTEGIDMC 1621 Query: 112 -ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L E + + + R + + Q + C R V T Sbjct: 1622 IVAWILWPDEERSSNPNLEKEVKR-RLPTQAVAAANRNGRWKNQMRRAAHNGCCRRVAQT 1680 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 R L L L E L + + G +D++ L+ + ++ ++ + L Sbjct: 1681 RALCSVLWKLLISEGLVEALKKIEMPLVNVLADMELWGIGVDMEACLRARNVLGKKLRHL 1740 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------DMSEGTLKSILSHSNITQLA 274 ++ +L + L+ + + + T K L Sbjct: 1741 EKKAYELAGMTFSLYTA-ADIANVLYGRLKLPIPEGHGKGKLHPSTDKHCLDLLRKKYCC 1799 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + ++ L + F+ W + Sbjct: 1800 FAFMFYATIAALK-----------------LGLLMLFFLILMILIWVSEIKVLLRTNLGV 1842 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIA 393 + R I L+ AD + IE R++A + Sbjct: 1843 MQCVEHMVEFKISMDKNGGDAEANNYKINAREFFIPTQENWLLLTADYSQIELRLMAHFS 1902 Query: 394 GEDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + I+ + D++ A+ + V+ +R K + + Y GA Sbjct: 1903 KDASLIELLSKPHGDVFTIIAARWTGKAEESVASLERDQTKRLVYGILYGMGANTL---- 1958 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 L+ K S + S + + L G L K + Sbjct: 1959 -AQQLECSSDEAAEKIKSFKSCFPGVASWLHEAVASCRKNGYVETLKGRKRFLSKIKFGN 2017 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 K+ ++ V SA + + + + R+ D Sbjct: 2018 S--------KEKSKAQRQAVNSICQGSAADLIKIAMINIYSVIA----------RVDGPD 2059 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + M K I+L VHDE+ Sbjct: 2060 PSSSLA-------------------------------TKFHML---KGRCRILLQVHDEL 2085 Query: 633 VSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662 V E +L M S +P Sbjct: 2086 VLEVDPPVIKEAASLLQAGMENAASL-LDMP 2115 >gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus] Length = 1821 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 67/470 (14%), Positives = 129/470 (27%), Gaps = 82/470 (17%) Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRS-SRQT--YALRMYLFLITGIDLVDMSEGTLKSI 264 + + + + RK + + + T + + T + L+ Sbjct: 1406 RARIKLKKIRKMRSQKLAEDTLTEVNNRLNSPIRAESSDIARNKTKQKAKPKLKEILERN 1465 Query: 265 LSHSNITQL-AKDLILNRLASSGSAILKL--------NTLSEAVSSDGRLRGTLQFYGAS 315 L +N + S ++ K+ L + +D R+RG + Sbjct: 1466 LLLANCNTDSIIYNSEDETTLSLASKTKIIETQSNLIQPLLKLAQTDSRVRG--NSITCT 1523 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P+ + VR + + G Sbjct: 1524 VTGRVSMHEPNLQNVPKD-------------------FSFADNNFVLSVRMAFVPALGNI 1564 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD +E R+L + + + DI+ + AK N ++V+ E R K + Sbjct: 1565 MLSADYCQLELRLLTHFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQRTKQL 1624 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y G K L + + S + + ++ Sbjct: 1625 CYGMIYGMGVKSLAE-----NLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHRDVYI 1679 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L+G R + + + ++ + Sbjct: 1680 TTLLGR---------RRQFPDLKSTKSSTRAQAERQAVNTKVQGSAADIVKKAMISIEER 1730 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R + D +N KL N SRD+ Sbjct: 1731 I----------RCNFPDSAIIFPEMN-----------NTRKLRSN-----SRDM------ 1758 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLK 664 + G +VL +HDE++ E V + M LP+K Sbjct: 1759 --QQRGGYLVLQLHDELLYEVNLADLKEVAAIIRESMENVCQLTVPLPVK 1806 >gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 601 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 72/267 (26%), Gaps = 49/267 (18%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE----------QSAMPSDLLQYLRDETVMCVAHNSL 74 A++A + ++A T + + L L D V ++ Sbjct: 347 AQRAQLVGLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHAK 406 Query: 75 FERILFKKTL-------GIDIPSKRWICTSVLARTNGLP---SSLKNA-CLALNFSEHLT 123 F L GID+ R+ T + + + L + Sbjct: 407 FAINLLANCALDGDQTQGIDLQGVRF-DTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-- 181 + GK A + G+Y + + T L + Sbjct: 466 QEIAGKGAKQL---------------TFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAA 510 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + I +G +D +L+ + + L+ + + Sbjct: 511 IPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG 259 + L + L+ G+ ++ + Sbjct: 571 -NLGSPKQLGVILYEKLGMPILSKTAT 596 >gi|303271985|ref|XP_003055354.1| helicase/polymerase domain-containing protein [Micromonas pusilla CCMP1545] gi|226463328|gb|EEH60606.1| helicase/polymerase domain-containing protein [Micromonas pusilla CCMP1545] Length = 1996 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 85/728 (11%), Positives = 171/728 (23%), Gaps = 148/728 (20%) Query: 31 TLCAYAWDDEP--VKLWDRTEQSAMPS--------DLLQYLRDETVMCVAHNSLFERILF 80 A ++ P V + + L V V + Sbjct: 1324 VGIALSFPFNPLAVFYAPIVHGAGGGGATRGLPWTRVRDVLSRSGVGKV----TVDLKPQ 1379 Query: 81 KKTLGIDIPSK-RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGK-----ALIAR 134 + +G + + A L + + ++ R Sbjct: 1380 LRAMGAGATIAAPVVDVKIAAWVLHPDEELLKYSSQTGWDALNAVDPDRARGPCAGMLER 1439 Query: 135 FCKGSIDSPPYDCTRANHVQAWQ------------LFGEYCKRDVEATRELFKR-----L 177 F ++ +A D +L L Sbjct: 1440 FAGDVDADAIRAASKWRGPRATADGVNAGGANAAFAVASALSLDALVRAKLADPRAPSGL 1499 Query: 178 IPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----------V 225 E L + ++ G + + + ++++ + Sbjct: 1500 EDALRAIEMPLVPVLASMERAGVAFAPATLSRQLRRATKRVREIETEAVAVVATHFACRH 1559 Query: 226 KLTDGIIRSSRQTYALRMYLFLI----TGIDLVDMSEGTLKS-------------ILSHS 268 + + + LF G + ++ T + Sbjct: 1560 PGMAPPEFNLASSDDVARVLFDAPPAGLGAEPPRGAKPTAARGRRSTRQDDLLALVREQG 1619 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS--------------DGRLRGTLQFYGA 314 L+L + + + N S RLRG + Sbjct: 1620 GPIAAFPKLVLEHRSLRKL-LDEANEFGRLAKSELGGDAAAAADESVTIRLRGVIHQTN- 1677 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILT--QTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR + Q +PR + + A R D + +R+ A Sbjct: 1678 TGTGRLAMEDPNLQCVPRPREFALSRAYPERLSASGRVSPGTDAGAEETLAIRNAFRAPR 1737 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAF---ANGEDIYVTTYAKAFNTPIDKVSKEQR 429 GKKL+ D IE RV+A ++ + I A + + K T VS E R Sbjct: 1738 GKKLIAFDYKQIELRVIAHLSCDRGLIAALCVRSVDPFKVIAARWKGDGTTPKNVSDEDR 1797 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 A K + + Y G ++ + + + E + Sbjct: 1798 AKAKELCYGICYGAGVGRYQQ-----AMGVTELEARAAIEDFKRSLPGVERWKSALVKDA 1852 Query: 490 PEFA--VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 E + G L L G E +I+ + Sbjct: 1853 RERTPPHVRTIAGRCRFLP------------SLNATGAGGEIRAADERKAINTACQGSAA 1900 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 +V + V ++ + A + Sbjct: 1901 DIV----------------KRVMIELHAKLTSGGGADDDDE----WAP------------ 1928 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF-SVGTLCSLMTKNPSW-AKGLPLKA 665 ++ ++VL VHDE++ E + +V + +M + +PL Sbjct: 1929 ------LREVDA--CEMVLQVHDELLFEVDERKVDVAVRAIRGVMERAREVHDMKVPLPV 1980 Query: 666 EGYEAKRY 673 + Sbjct: 1981 RVSVGDDW 1988 >gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 242 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 97/318 (30%), Gaps = 89/318 (27%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G +L+ AD + IE R++A ++ + I+AF GED++ ++AF+ PID Sbjct: 1 IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ E R K M GL Sbjct: 61 EVTPELRRRVKAMSYG--------------LAYGLS------------------------ 82 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A + K+ ++ + + + GV +D+ + + Sbjct: 83 ------AYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVL---- 132 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 RR ++ + A + + Sbjct: 133 ----------------------GRRRYLPELDSSNRQVREAAERA---------ALNAPI 161 Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 Q + DI+ M N + I+L VHDE++ E + + L M Sbjct: 162 QGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNAY 221 Query: 656 SWAKGLPLKAEGYEAKRY 673 +PL+ + + Sbjct: 222 P--LDVPLEVSVGYGRSW 237 >gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 361 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 38/303 (12%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ G ++ AD + +E R+LA +A + + +G D++ AK + +D Sbjct: 82 IRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQIAAKWKHVDVDS 141 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ EQR K M + Y GA+ L + + S ++ +++ L Sbjct: 142 VTAEQRQQAKQMCYGMIYGIGARALGE-----QLGVCEEDAAAFMESFKSQYKGMKNYLL 196 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + Q E L G R + + Sbjct: 197 EVVKQCREKGYVQTLTGR---------RRYLPAIHHTNPGARNQAERQAVNTTVQGSA-- 245 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 A++ + M + R + + P+++R + + S + R +T T Sbjct: 246 ADLVKTAMVKIDRRLAVEYPATKRSHKHK-EEEESGTAPGRRKSRRLQTSTTGFTP---- 300 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLP 662 G +VL +HDE++ E V L M + LP Sbjct: 301 ----------------PGAFLVLQLHDELIYEVRREDVDQVAQLIKTEMENAMKLSVRLP 344 Query: 663 LKA 665 +K Sbjct: 345 VKV 347 >gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 82/235 (34%), Gaps = 40/235 (17%) Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGR+ T + A TGR S QN+P A Sbjct: 13 SDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRDPA 47 Query: 361 SDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +RS + G + L+ +D + +E R++A ++G++ I+AF +G D + + + Sbjct: 48 GREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGV 107 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+D+++ +QR+ K M L Y T L ++ F + + Sbjct: 108 PVDEITPDQRSHVKAMSYGLAYG-----LSTYGLSQQLGIKPGEAESLKRQYFATFGKVH 162 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + E + + G R G+ + + + Sbjct: 163 EYLESLVSSAREKGYTETIYGR---------RRYFPGLKSPNRAVRDAAERAALN 208 >gi|74002862|ref|XP_545125.2| PREDICTED: similar to DNA polymerase theta (DNA polymerase eta) [Canis familiaris] Length = 576 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 63/582 (10%), Positives = 144/582 (24%), Gaps = 101/582 (17%) Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKN-ACLALNFSEHLTK-MEEGKAL 131 + + GI + + + V S L + L L + +E G+ + Sbjct: 27 YKILLLSCGISLE-QSYEDPKVACWLLDPDSKEPTLHSIVSSFLPHELLLLEGIETGQGI 85 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 + + + + A+ + + + E Sbjct: 86 QSLGLNVNTEHSGRYRASVESILAFNAMNQLNSLLKKENLQDVFC-----KVEMPSQYCL 140 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G + ++ + ++ +L + Sbjct: 141 ALLELNGIGFSTTECESQKHIMQAKLDAIEIQAYQLAGHSFSFTSSD------------- 187 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLR 306 + +L+ LIL + + + L + R+ Sbjct: 188 -------DIAEDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKRLNPFLGMERIY 240 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQ-----------ERSEEILTQTIQALNRGETIAD 355 Q + A TGR + QN+PR + L + + + Sbjct: 241 PVSQSHTA--TGRITFMEPNIQNVPRDFEIKMPILVGESPPSQALAKGLLPVYGRGRGKR 298 Query: 356 PLGLASD------------------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 G S +R + +G ++ AD + +E R+LA ++ + Sbjct: 299 SCGPNSGHQAQVEERASDQGMPFSVSMRHAFVPFSGGLILAADYSQLELRILAHLSHDRR 358 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+ G D++ + A+ + V + R K + + Y GAK + Sbjct: 359 LIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGE-----QM 413 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +++ S + ++G L + Sbjct: 414 GIKENDAACYIESFKSRYTGINHFMRETVKNCKRNGFVQTILGRRRYLPGINDNNPYH-- 471 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + + + K+++ + P V Sbjct: 472 ------------KAHGKHSHGQYINDCDCIPIRPYLQKQELSQIWPEGLPTSGPTV---- 515 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 + R+ VQ + DI+ N K Sbjct: 516 -----PSLNAERQAI------NTTVQGSAADIVKIATVNIQK 546 >gi|303289002|ref|XP_003063789.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454857|gb|EEH52162.1| predicted protein [Micromonas pusilla CCMP1545] Length = 942 Score = 147 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 78/560 (13%), Positives = 147/560 (26%), Gaps = 105/560 (18%) Query: 154 QAWQLFGEYCKRDVEATRELFKR-----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + T+ L L + E + T+ G D +V Sbjct: 445 RPLERLRLDLLAAARLTQRLKAHERVRGLARVVALEGAIAAGLGTLESIGLPFDASVVEA 504 Query: 209 LQELIAQERKKLDEDIVK--LTDGIIRSSRQTYALRMYLFLITGIDLVD----------- 255 + +E ++ + + G + + L+ G Sbjct: 505 AAVGLRRELSSIEAEASRSLPGRGQPLNLSSPQQVADVLYGFLGFPPPSSNAMQGAKTAQ 564 Query: 256 -MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 ++ + + ++L A + + + N + +DGRLR Sbjct: 565 LTTKDDVLRDFASRPNAHPLPGMVLRYRAVTRA-VAMCNAYASLTDADGRLRCEWN-NTR 622 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S Q + R E S + + N +R+ +A GK Sbjct: 623 TATGRLSSSNPNLQAVGRAEHSAGAGEEELATFN---------------LRAAFVAPPGK 667 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFA---NGEDIYVTTYAKAFNTPID-KVSKEQRA 430 L+ D + IE R LA + ++ +G D++ + + + P D VS E R Sbjct: 668 VLLAVDYSQIELRTLAHLTRDEKLCGVLRVAGDGGDVFKMIWNLSRDAPRDAPVSAEDRD 727 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + Y G L + + F + + + +++ Sbjct: 728 KAKRTVYGVLYGQGVAGLAEK-----LACSTDAAKGLIDALFRTFPGLKRFVVATKERAR 782 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + G L A K + + + R Sbjct: 783 ATKSAELPSGRHRPLPGIDAAAASARAEAERKAMNTLVQGTAADMMKTAMARWFAAISPA 842 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 I + ++DV+G Sbjct: 843 PAASASASAISPGGAEGDAHADVRG----------------------------------- 867 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPD--TPYFSVGTLCS-LMTKNP------------ 655 A ++ +HDE++ E D V L M + Sbjct: 868 -----KADPTRARLIAQIHDELLFECDDARECVNRVAALAKVCMERAAKVSVPTPVKVSV 922 Query: 656 --SWAKGLPLKAEGYEAKRY 673 WA PL G + RY Sbjct: 923 GRDWATMTPL---GEFSARY 939 >gi|300781564|ref|ZP_07091418.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300533271|gb|EFK54332.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 1474 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 81/533 (15%), Positives = 161/533 (30%), Gaps = 93/533 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYL 61 + D+ET S + + L Y+ EPV D +L+ L Sbjct: 903 TVVFDLETGSADD-----QHVTDDPGFVRLATYSVGGAEPVATTDIA------GELIPLL 951 Query: 62 RDETVMCVAHNS-LFERILFKKTLGID----IPSKRWICTSVLARTN-----GLPSSLKN 111 V HN ++ + ++ G+D I + + T ++ R L +L Sbjct: 952 EQAD-TIVGHNIVQYDLPVLQRLYGLDVGALIKAGKVRDTLIMVRLASGGNRNLEYNLDA 1010 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 K+ G + + +D ++ + + EY +DV A Sbjct: 1011 VAHRCGVDG---KLLAGSE--SALKALAKQYGGFDKIPVDNPE----YVEYALQDVRANG 1061 Query: 172 ELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 ++++L+P E + + G R+D V AQ + ++ Sbjct: 1062 AVYEKLLPATIEAVGEDYLRREHEKMHSLSVVESHGVRVDTAKVDAFIAEEAQTKAEIRA 1121 Query: 223 D------IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQ 272 I S+ A+ YL G+ ++ T L+ Sbjct: 1122 WLVDTVGIPDEGKAPWASAAGKQAIAEYL-ERFGVAAPRTAKGAISTSAKALNDLAEAHA 1180 Query: 273 LAKDLILN--RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +++ ++ + + T+ + + + R + TGR S Sbjct: 1181 DVPEVVELAAKMETLLQSSTPATTIKKYLRGE---RVYPHITSSQATGRLSTTNPGM--- 1234 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVL 389 T+ R I+A + ++L+ DL+ I+AR + Sbjct: 1235 ---------------------TVFGSRDERLIRQREMIVADSADEELISVDLSQIDARCM 1273 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A +G+ FA G D + + F +R+ K + A Y G K F Sbjct: 1274 AAGSGDAAYAALFAPGRDAHTEMAIRVFG------DAARRSDAKALGHAANYGMGPKSFA 1327 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 A + + + ++ Q E+ ++ G Sbjct: 1328 AHA-----GISEVEAKEQLDRLHFEFPQLEAFKDHLRKHAKALGWIATGFGRR 1375 >gi|29366786|ref|NP_813726.1| gp11 [Streptomyces phage phiBT1] gi|29243106|emb|CAD80134.1| gp11 [Streptomyces phage phiBT1] Length = 624 Score = 147 bits (370), Expect = 6e-33, Method: Composition-based stats. Identities = 89/714 (12%), Positives = 165/714 (23%), Gaps = 179/714 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 +L +D ET G+ YA + + + + + Sbjct: 36 ELALDTETT--------GLDIYAPGYGLRTVQFGT-THEAWVIH----YELRGRFKEA-- 80 Query: 63 DETVMCVA-----HNSLFERILFKKTLGIDIPSK--RWICTSVLARTNGL--------PS 107 + V+ HN++F+ ++ + + S R I T + A + Sbjct: 81 ADYVLKHCPRFLIHNAMFDWLVLDAHADVSLESLAPRTIDTKIKATLIDPRQPQEGGIGT 140 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LK + +G G + + H + Y DV Sbjct: 141 GLKPLSAFY--VDPSAPDTQGDLTAVFRSLGLTKATGFAGIDLRHP----TYNLYAGLDV 194 Query: 168 EATRELFKRLI----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L L L+D E ++ + + G +DL+ V L+ ++ +E Sbjct: 195 IYTARLNPCLDVEHERLGVRAALTDYEHEIAYMCAYMQRAGLVLDLEYVDTLRRMLREEE 254 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNI---- 270 K S + L + K +L Sbjct: 255 DKYATIAASWGVE---SVNSGAQVSEALLAMGETLTETTDGGALKVSKKVLLPLADLDRD 311 Query: 271 --------TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +L + + +E GR+ T+ A Sbjct: 312 WERIGAREPNPLAEAVLRAKRAGKWVSSYADKFAENHDPLGRIHPTINTLQARTGRMSIS 371 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 F Q LP + +R ++ + D Sbjct: 372 GDFAAQTLPSSDW---------------------------MIRRAVLGDKPDHIVGSVDF 404 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE RVLA +AG + F + + Sbjct: 405 QAIEMRVLAALAGVRRMTEGFLDPDPDPSVYPD--------------------------- 437 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + +T + + + Sbjct: 438 ----------GFDIHMYTARLIKGPNATKRDRKVFKGAGFGKVYGGGIKTISRQTGAPEH 487 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + + + Sbjct: 488 EIARAVAEYDRVFPEIKRASSKWQREARARGCVTVT------------------------ 523 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 P+ R L R R Y + Q+ +RD+L + M N G Sbjct: 524 -PTGRILPLD-----------------RNRMYA--VVNYKCQSTARDVLGQAMINMRDAG 563 Query: 622 Y--DIVLTVHDEIVSETPDTPY-FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + L +HDEIV P + M G+P+ AE R Sbjct: 564 LLEYMKLPIHDEIVFSAPKSDAQDIAREFERCM--TMDL-FGVPVVAEADLGGR 614 >gi|308808137|ref|XP_003081379.1| helicase and polymerase containing protein TEBICHI (ISS) [Ostreococcus tauri] gi|116059841|emb|CAL55548.1| helicase and polymerase containing protein TEBICHI (ISS) [Ostreococcus tauri] Length = 1489 Score = 147 bits (370), Expect = 7e-33, Method: Composition-based stats. Identities = 71/634 (11%), Positives = 146/634 (23%), Gaps = 160/634 (25%) Query: 92 RWICTSVLARTNGLPS------SLKNACLALNFSEH-------LTKMEEGKALIARFCKG 138 + + A + S + +++ K+ + C Sbjct: 916 PCVDVRIAAWLLRPSAPEVQSSSRDDL--VHGMDPTEPLMSLFSAELDSAKSGVDTACL- 972 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---KRLIPLSDGERDLWLLDQTIN 195 H++ C E + L E + Sbjct: 973 ---LLERKGRSYEHLKPLSRAVASCFLMGRFLWEECEAKDLIRALIRVEMPFVAPIVAME 1029 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ-------TYALRMYLFLI 248 D + + + KKL+E K L L+ Sbjct: 1030 TVKVPFDPRRLKEEIAAMDDRLKKLEEYAKKQKWLDPLHPANLRRAFTDNAYLVKCLYEH 1089 Query: 249 TGIDLVDM-------------------SEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + ++ T + + S ++ +R Sbjct: 1090 LKLTPPAGSELAFTKDWVSNAKECTVSTKTTYEKVHEQSGHMFPL-LILEHRSVFKRL-- 1146 Query: 290 LKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L D R+R ++ GR + ++ Sbjct: 1147 TFADVLLGMYGESMDSRIRYSIHQTN-HDCGRLTHIEPNFH--------------SMAHD 1191 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--- 404 + D L VRS + + D + +E RV+A +G+ I N Sbjct: 1192 MKCVDAFDGLDAPVISVRSAFTPPADRVFLRVDYSHLELRVMAHFSGDQTLIALLQNPEP 1251 Query: 405 ---GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 +D + K P++ VS ++R K + + Y G Sbjct: 1252 VNAHDDPFTMLACKWRGVPLNAVSVDERQRVKNLVYGILYGSGV---------------- 1295 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A + +L +++ ++ ++ Sbjct: 1296 ----------------------------KRLARELRLSDEKAKILVDELKSMLPTLMNWR 1327 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 D+ K + SSR + ++ Sbjct: 1328 DDVVARAIE-----------------------EKPIPRVTTISSRHRYFPELLSRSGDER 1364 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--------GYDIVLTVHDEIV 633 +A + + Q + DI + + +VLTVHDE V Sbjct: 1365 SAAERQ---------AVNTVCQGSAADIFKTAVVLVMETLRAKHLLDRCQLVLTVHDEAV 1415 Query: 634 SETPDTPYFSVGTLCS-LMTK-NPSWAKGLPLKA 665 E + + + M + +PL Sbjct: 1416 FEVNASVAKAAARIVRNTMESVAGVFNLSVPLPV 1449 >gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] Length = 590 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 61/396 (15%), Positives = 107/396 (27%), Gaps = 109/396 (27%) Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + V +D R+R L A GR+S Q +P + + Sbjct: 297 LDKLVSTYRWWARDFVDADRRIRCRLHPLAADS-GRFSCTEPNLQQVPSEYTAPG----- 350 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R+C + + G +L+VAD A IE RV A +A D F Sbjct: 351 --------------------LRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFR 390 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D + T A P +V +R + K + + GA+ F++ A+ Sbjct: 391 AGRDPHRATAATLTGKPEPEVESHERKLAKAVNFGFLFGMGARRFRSYAAS--------- 441 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 L ++A+ G+ + Sbjct: 442 -----------------------------GYGLDLDERQAAEAREAFFRTFPGIAAWHRR 472 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + E +++ RR + + + Sbjct: 473 VGALSRRGDHEAITVTTAM----------------------GRRKTFPAGRFSFNA---- 506 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDT 639 VQ + + M + G VL VHDE ++E P+ Sbjct: 507 -------------ALNIPVQGTAAEGFKAAMIRLHRELPSIGGRGVLVVHDEYLAEVPEA 553 Query: 640 PYFSVGTLCS-LMTKNP-SWAKGLPLKAEGYEAKRY 673 + M +P+ E A + Sbjct: 554 RAEEGKAMVEAHMIAAMGELVHTVPIVVEAEIAAHW 589 >gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 4 LFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L K GV+ YAE + L Y+ D VK+ D + +P +++ L Sbjct: 23 LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82 Query: 62 RDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACLALN 117 DE V A N+ FERI + LG + + W C+ V + GLP SL+ L Sbjct: 83 EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPASWKCSMVWSAYMGLPLSLEGVGAVLG 142 Query: 118 FSEHLTKMEEGKALI 132 K+ EGK LI Sbjct: 143 LE--KQKLTEGKDLI 155 >gi|296119307|ref|ZP_06837875.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295967699|gb|EFG80956.1| DNA polymerase I domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 1388 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 186/707 (26%), Gaps = 189/707 (26%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMPSDLLQYL 61 + D+ET L V + + L Y+ + EPV D +L+ L Sbjct: 816 TVVFDLETGDADDLHVTEVPGF-----VRLATYSVNGAEPVPTTDIA------GELIPLL 864 Query: 62 RDETVMCVAHN-SLFERILFKKTLGID----IPSKRWICTSVLARTN-----GLPSSLKN 111 V HN ++ ++ G+D I + R T V+AR L L Sbjct: 865 EKAD-TIVGHNVLQYDLPALQRLYGLDVKALIKADRVRDTLVMARLRAGGDKNLKYDLDK 923 Query: 112 ACLALNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L E KAL +F +D ++ + EY +DV A Sbjct: 924 VASRCGVDGKLLADGETALKALAKQF-------GGFDKIPVDNPN----YVEYALQDVRA 972 Query: 170 TRELFKRL---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++++L E + RG R+D V + Q + ++ Sbjct: 973 NVAVYEKLLTSVGKEINQDYLRLEHAKMHALAVVEARGIRVDTSKVDQFLAEEEQTKGEI 1032 Query: 221 DEDIVKL--TDGIIRSSRQTYALRMYLFLIT---GIDLVDMSE-------GTLKSILSHS 268 ++ +S + A + + + S+ L + Sbjct: 1033 RTWLIDTVGIPDEGKSPWASAAGKQVIADYLSQFNVAAPRTSKGSISTSTKALNELAEKH 1092 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 +L ++ + R+ +++ A TGR S Sbjct: 1093 PDVPEVVELAAKMETLLHASTP--ASTINRYLRGDRVYPSIKSIQA--TGRLSTTKPGM- 1147 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEAR 387 T+ G R I+ + + LV DL+ I+AR Sbjct: 1148 -----------------------TVFGSRGEWLIRQREMILPDSTDEALVSVDLSQIDAR 1184 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 +A +G+ A + G Sbjct: 1185 CMAAGSGD---------------------------------------ANYAQLFTPGRDA 1205 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 MA V ++ +A +H FA + Sbjct: 1206 HTEMAL-----------RVFGDASRRSDAKALAHAANYGMGQKSFAQHAGISEVEATKQL 1254 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + + + + L + A I RR Sbjct: 1255 ERLHYEFPALEKFKDHLRKHAAAHG--------------------------WIPTGFGRR 1288 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV-L 626 + K +Y YG Q +RD+ EG+ N ++V + Sbjct: 1289 VTVDRAK---AYTRGP-------AAYG--------QGTARDVFLEGVLNLPAEVLEMVRI 1330 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMT--KNPSWAK----GLPLKAEG 667 VHDEIV P + M + +P+ ++ Sbjct: 1331 FVHDEIVLSVPRDRAEEIKHTV--MGAFQAVELPNTGGVDVPVLSDS 1375 >gi|325171249|ref|YP_004251221.1| putative DNA polymerase [Vibrio phage ICP2] gi|323512275|gb|ADX87732.1| putative DNA polymerase [Vibrio phage ICP2] gi|323512343|gb|ADX87799.1| putative DNA polymerase [Vibrio phage ICP2_2006_A] Length = 710 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 94/773 (12%), Positives = 192/773 (24%), Gaps = 195/773 (25%) Query: 4 LFIDIETRSPQ-PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L D ET + K+ + + D + P+ + Sbjct: 17 LSFDCETTIRNHDIGKLQASPFHPANKMVCFGCKTLDAEPVVLRPEHAD-FPTIIR---E 72 Query: 63 DETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVLARTN-GLPS---SLKNACLA 115 + ++ V N F+ + +T +P+ T + G SL + Sbjct: 73 NGVLLLVGQNIKFDLLWMMRTYPDFRDMLPNLCIWDTQLAEYLLTGQDHKMASLNELAMK 132 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + K + + + + EY K DV T +F Sbjct: 133 YGGT----------------LKDDRIAEFWKAGVDTSDIPFPMLEEYQKYDVINTEIVFL 176 Query: 176 RLIPLSDGERDLWLLDQTI---------NDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + E L L + G + D DL L+L + + E + + + Sbjct: 177 EQVDQIIKEGLLNLTMTQMDALMATTEMEWHGMKFDKDLALELAKPLQAEIEDIKGAVSS 236 Query: 227 LT-----DGIIRSSRQTYALRMYLF----------------------------------- 246 + + + +F Sbjct: 237 VMEAVGFPKDSINVGSNSQISALIFGGEVKYKEKDYIYNDDGTIATFKGGARAGQPKTKI 296 Query: 247 -------LITGIDLVDMSE--------GTLKSILSHSNITQLAKDL---ILNRLASSGSA 288 + + +L + + + + L IL Sbjct: 297 FERSKRIEGLCKPISPKGKNGSYPVGDDSLSKVKAKYKGDAVVEQLVGDILKFRQLEKDV 356 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + V DG L G + + TGR S QN+ S + L + Sbjct: 357 NTYYIGYASQVFPDGCLHGNYN-HTKTGTGRLSSSSPNLQNI---SNSGKDLQRKNNKTT 412 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + ++D ++ CII+ K++ D + +E A + G+ K G D Sbjct: 413 QRFHMSD--------IKRCIISRFPNGKIMECDFSQLEVVGGAVLTGDPMMKKDIIEGVD 464 Query: 408 IYVTTYAKAF-----------NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + + + A D + R K + AL Y GA+ A Sbjct: 465 THCMSASWANPKYSYEEILAGYKAEDPFFTKLRKNAKPVNFALQYGAGAETAAENA---- 520 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + ++ + + + +Q Sbjct: 521 -GIEVEQAQAIIDNYYKRYCVLKQFQDDVIEQ---------------------------- 551 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++ R + R M P+ R + Sbjct: 552 ---------------------VNKSRQPSSRRTEMGMPAGRGEYRNPTGRIFT----FYE 586 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAIS-RDILCEGMKNATKN---------GYDIVL 626 + + Q+ + DI+ + + K ++ Sbjct: 587 YDAPEFLRRRGQMTSFSPTQCKNYPTQSFATGDIVPMMLGHIYKLLMTDKTLRDKCLLIG 646 Query: 627 TVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAK-------GLPLKAEGYEAK 671 TVHD +V + LM + P + + +PL + + Sbjct: 647 TVHDSVVFDVHPDILDYAAKAVRGLMLRTPEYVERYLKVPFDMPLACDVDIGE 699 >gi|317487299|ref|ZP_07946094.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6] gi|316921489|gb|EFV42780.1| DNA polymerase family A [Bilophila wadsworthia 3_1_6] Length = 626 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 93/699 (13%), Positives = 168/699 (24%), Gaps = 189/699 (27%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 DIET A+ +T ++++ + L Q + Sbjct: 28 FDIETDGLLDETSTIHCICAKDF-LTGESFSFGPGEI--------EDGLGLLCQ-----S 73 Query: 66 VMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLT 123 + VAHN F+ +K + R T +R +LK+ L Sbjct: 74 RLLVAHNGLCFDIPAIQKLHP-SLLLPRLFDTLTASRLIWT--NLKDLDFTQLRKKSCRF 130 Query: 124 --KMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPL 180 K+ +L A + + Y T N W + YC++DVE L++ ++ Sbjct: 131 PPKLAGSHSLDAWGQRLGVMKGDYGKTTENAWSRWSEDMQRYCEQDVEVLEALYRHILDQ 190 Query: 181 ------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG---- 230 E + + G D L +A +R + ++ Sbjct: 191 RYSPEALALEHEFQAVIFHQERTGVWFDERAAQSLYAELAAKRNDAVTALQEVFPQKRIE 250 Query: 231 -------------------------IIRSSRQTYALRMYLFLITGIDL----VDMSEGTL 261 + + L G Sbjct: 251 EIFIPKANNRTRGYVKGVPFTKVRYETFNPASRQQIADRLMEKHGWKPSEFTDTGQPKVD 310 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTG 318 + +L+ +++ L + + V DGR+ G + GA TG Sbjct: 311 EDVLASL--PFPECKPLVDYLELLKIIGMLAEGKNGWLKLVGPDGRIHGRVITNGA-VTG 367 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R + +P G R+ A V Sbjct: 368 RCTHNSPNLAQIP------------------------ARGQYGKQCRALFAAPPPLVQVG 403 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD +G+E R+LA + A+ G V E R K A Sbjct: 404 ADASGLELRMLAHY------LAAYDGGAYAKVLLEGDIHTANQHAAGLETRDNAKTFIYA 457 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 Y G + ++ + Sbjct: 458 FLYGAGDEKLGSIVAPLASSA-----------------------------------VQTK 482 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G A + + + +L D+ G + + + Sbjct: 483 RGRALK---DRFFRSLPAIKRLIDDVQ---------GVLTGPGKRPYLIGI--------- 521 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--- 615 R L + ++Q+ ++ Sbjct: 522 -----DGRHLHIRSSHSALN---------------------TLLQSAGAVLMKLATVIFH 555 Query: 616 -NATKNGYDI------VLTVHDEIVSETPDTPYFSVGTL 647 A + G + VL VHDE T ++G L Sbjct: 556 MEAQRRGLRLGEDYAQVLHVHDEAQFNTTPEKADALGKL 594 >gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 169 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + W+ L + + + ++ + + + LPS R L Y+ Sbjct: 6 FPAIAAFWQALQCAVTDAIGHPETAHT-----CCGIAVQYSRAWLRLRLPSGRVLYYAAP 60 Query: 574 K----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + G SY+ T T + R TYGGKL ENI QA+SRD+L M GY IVLT Sbjct: 61 RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLT 120 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEI++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 121 VHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168 >gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] Length = 531 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 75/552 (13%), Positives = 138/552 (25%), Gaps = 129/552 (23%) Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTIND 196 T + Y +D+E + + P E + + Sbjct: 26 RPTEWAAPFPAEQL-VYMVQDIEIPYAIAQHQRPRIKEQKLARVVHLENEAVPALAAMEM 84 Query: 197 RGYRIDLDLVLKLQEL-----------IAQERKKLDEDIVKLTDGIIRSS---------R 236 RG ID++ + + + + + Sbjct: 85 RGVCIDVERWRSILARKQARQQALEPGLRETLGTALQRACDDYQVALTREEKRLVEAYRA 144 Query: 237 QTYALRMYLFLITGI----------DLVDMS----------------------EGTLKSI 264 LF G+ T + Sbjct: 145 NPAQSSWGLFRRKGLAQWQATHKKPPQPKERGTINLASPPQLLAALRALGVPVSATDEET 204 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L A +L A L V +DGRLR GA +GR Sbjct: 205 LEPYAKEHAAVASLLQWKELHKFASSFGENLLAMVDTDGRLRTDYAQIGA-ASGRIICSK 263 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 Q +P + + VR C +A G +++ ADL+ I Sbjct: 264 PNLQQIP---------------------AEEEEEGQEEPVRHCFVAPPGYRILKADLSNI 302 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI-------GKVMEL 437 E R+LA ++ + ++ FA G+D++ T F+ + +K K + Sbjct: 303 ELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKRHLYKGVPGRKIAKTINF 362 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 L Y GA A + + + FE + Q E Sbjct: 363 GLAYGMGANGLANRA-----GVDLPTAKSLIRTYFETYRGIARWLPLTAKQALEQGYAVT 417 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 L G A + +++ + + +++R Sbjct: 418 LAGRRRT------FASIPTSVDWNREVRASAERSAKN------HPIRGTNADILKRALAL 465 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 +H LPS L+ + V + + ++ M A Sbjct: 466 LHASLPSGAHLILA-VHDEIVVECPEECVEE-----------------AAGVMRAAMVQA 507 Query: 618 TKNGYDIVLTVH 629 ++ + VH Sbjct: 508 CRDFLKV---VH 516 >gi|56693107|ref|YP_164694.1| hypothetical protein LP65_gp059 [Lactobacillus phage LP65] gi|54633608|gb|AAV35879.1| orf59 [Lactobacillus phage LP65] Length = 988 Score = 144 bits (363), Expect = 4e-32, Method: Composition-based stats. Identities = 89/662 (13%), Positives = 177/662 (26%), Gaps = 165/662 (24%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + ID ET + ++ A +T+ + +W D + E+ Sbjct: 198 KIIGIDFET--------NTLESWRTNARMTMMSISWKDHQGVVIPIDKTGFQPFSEEEKQ 249 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---- 107 + ++ Q + + + V HN F+ + K G+D S + I T V+ G Sbjct: 250 DIKHNVNQIFKSDKIWKVLHNGKFDITMLKDVNGLD-RSIKCIDTEVM-YYVGFSQAKKV 307 Query: 108 --SLKNACLAL----NFS-----------EHLTK--------------MEEGKA----LI 132 LK A + E K EGK + Sbjct: 308 KKGLKQIARAFTDMGGYEQPLEEFKNEYLEKHYKNWYNAEIEKYRKALELEGKDPDKAKV 367 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL-- 190 ++ + + ++ Y D + T LF +++ R L Sbjct: 368 SKKDYKAPTNEIDGGKFNYDWIDMEVQFPYAAADADVTLRLFNKMVGRIKKNRAWVNLVF 427 Query: 191 ---------DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI----------------- 224 TI G ++D++ +L + + R + +I Sbjct: 428 NIFPRLNDALTTIEHNGIKLDMERNRELHDKYVKHRDDMKNEILSTIPEIKMIEKERLNF 487 Query: 225 --------------------------VKLTDGIIRSSR-----QTYALRMYLFLITGIDL 253 K G ++ L+ + G +L Sbjct: 488 AMEREQIKKIKPADRTKEQKQKFKDYAKNCTGKDGVPNYKFKFTPNDMKRLLYDVLGYEL 547 Query: 254 VD------------MSEG-TLKSILSHSNITQLAKDLILNRLASSGSAIL---KLNTLSE 297 + ++ I S + ++ L E Sbjct: 548 PQEPPYVTGNPKNITWKSYSVGKAAQEYLEETYKTKFIDLYSKYSKAETALGSFIDKLPE 607 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 D ++ + Y + S F QN R+ + + + Sbjct: 608 VRDKDDFVKPSFNPYVTETSRLSSSGAFNAQNQTRRTDNPNDFNYSYGVKSMY------- 660 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 RS G L+ D + +E +A ++ + +A + +DI+ + F Sbjct: 661 -------RSRF---KGGILLNMDYSALEIYTMAMLSKDRNMTQALLDHKDIHKHNASLGF 710 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + P D+V+K R K + + Y G K L + + + Q Sbjct: 711 HVPYDEVTKNLRTSAKKVSFGIPYSMGIKTL-----AKDLGVDEKEAQRIYDAILATMPQ 765 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + Q+ + + L G +R V + KD+ Sbjct: 766 VKQAMADSQEFAARYKYAETLNG---------FRRDLSNVDSILKDVRAKAKRQAFNTEI 816 Query: 538 IS 539 Sbjct: 817 QG 818 >gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus] gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus] Length = 1177 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 76/652 (11%), Positives = 168/652 (25%), Gaps = 112/652 (17%) Query: 39 DEPVKLWDRTEQSAM-----PSDLLQYLRDETVMCVAHNSLFERILFKKTLGI-DIP--- 89 D V + + S + + + E + ++ +++ G+ D+ Sbjct: 613 DNAVFYLNLRKDSEIKCNLKQDLIRKLFTREDLTIDMFDAK-DQLKLAHKGGLLDLKQEV 671 Query: 90 SKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 V L+ G++ + + S Sbjct: 672 VVSVRDPKVACWLLQAEDKVIPLQAMVQQYCPEMTAICQLAGRSPGSTGPASNCGSAIDA 731 Query: 147 CTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 R + D T+ + E + + + G+ D Sbjct: 732 KIRCTVESFLVHHLLLSQLDHFTTQDRPQDMTATFTSREMPIHVALARMELVGFPADGAK 791 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSI 264 + L + ++++ E + +L G T + L + T + + Sbjct: 792 LGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVAAVL----KVPKDRNGRARTSRQV 847 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L + LA +I R S + + L + R+ G+ + + TGR S Sbjct: 848 LERIDSP-LAALVIAWRKIDSNLSRT-IEPLGRGIVGGRRIYGSSYCF--TSTGRISMHE 903 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAG 383 Q + + +P + R + K L+ AD Sbjct: 904 PNLQTV----------------VKDFRVEIEPGTVEMFSCRGTFACEDSSKVLISADFCQ 947 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQ 442 +E VL ++ + + +G+D++ AK + ++ ++ K + + Y Sbjct: 948 LELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIEDEREVSDELRNYTKAIVYGVIYG 1007 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GA+ L++ + + + + + + E + L G Sbjct: 1008 MGARSMAAE-----LNVDEDTARTLMEQFHATYPEIRRYAEKVVQVTRERGYIETLTGR- 1061 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + + ++ Sbjct: 1062 --------RRYLPAIHSTDSTKRSEAERQAVCTTVQGSAADILKNAIL------------ 1101 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 R K E + Sbjct: 1102 --------------------------RMARNLRKYRER-----------LALGEVE---- 1120 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 +VL +HDE++ E P VG + S M + LPL+ + + Sbjct: 1121 -LVLHMHDELIFEAPRDQARKVGKILKSSMENCAN--LSLPLRVKVKSGPSW 1169 >gi|21234370|ref|NP_640280.1| DNA polymerase [Vibrio phage VpV262] gi|21064883|gb|AAM28367.1| DNA polymerase [Vibrio phage VpV262] Length = 661 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 99/685 (14%), Positives = 192/685 (28%), Gaps = 155/685 (22%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M+ L +D+ET + A EQ I ++ + D+ + Sbjct: 26 MNFLVLDLET--DTDGDERSPDATWEQNDIVSASWVFGTGGRGTEKFVYGG--IHDMDEL 81 Query: 61 LRD--ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSS------LK 110 ++D E VAHN+ F+ + G+D T + L + L Sbjct: 82 IQDMYEADFVVAHNAKFDIKWLIRA-GLDPSRILVADTMLAEYVLTGNLKAGKKGALTLG 140 Query: 111 NACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L ++ + R P R N +Q + K E Sbjct: 141 ALAKQYLGVTKDPLVD-----KLMRGGVSPRVIPKSLLERRNKSDIFQTRNLWLKLRDEM 195 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L L + I G +D + V + ++ ++ +++ D++ + D Sbjct: 196 MERDVIHLF---YNRCLLSPVLADIELNGVHLDKERVCEEHDIASRRMAEVEADLMDMID 252 Query: 230 GIIRSSRQTYALRMYLFL--------ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 G R+ R ++ +++ G++ E L+ Sbjct: 253 G--RNPRSVPQMQEFIYDVLKFKPLKKRGVEWRPTGEEVLQFEARTKKQQAFLDLKKEFA 310 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ + L+ V+ QF A + T R S + + + L Sbjct: 311 QLNADLS-KNLDYFYGVVTEREDCLFYAQFNQAQTVTHRLSSSGIKTKFEMYPKAKSIQL 369 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + + R + + ++ D A IE RV +I + + Sbjct: 370 QNSPRKYKRLYSARN----------------PDWYVIEMDGAQIEFRVAGYIGQDTRICQ 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +G D++ T + + ++V+K+QR K G D Q Sbjct: 414 DIVDGVDVHRFTASVLNHCDEEEVTKDQRTDAKPDTFKPL----------YGGQYGTDDQ 463 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +A+R K+Q + Q Sbjct: 464 MA-------------------------------------------YYEAFRNKYQDITQA 480 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 +D + + R+ I P+ Y + S Sbjct: 481 QQDW--------------------------LMKVLRNKEITHPTGITFYYPNASMSSSGY 514 Query: 581 NTATSQLMRERTYGGKLTENIVQAIS-RDILCEGMKNA------TKNGYDIVLTVHDEIV 633 + VQ ++ +I+ + K +V TVHD ++ Sbjct: 515 CQDF----------PSVCNYPVQNLATAEIIPIALVAIWHVMKAMKLQSFLVNTVHDSVI 564 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWA 658 SE+P LM + WA Sbjct: 565 SESPRDEL-------ELMYEISKWA 582 >gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 36/260 (13%) Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTL 309 T + +L+ IL+ + L + + R+ + Sbjct: 2 KKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSF 61 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P + + +SC + Sbjct: 62 LQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------------------------KSCFV 96 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A +G + D + IE R+LA + ++ + AFAN EDI+ T F + + E R Sbjct: 97 AKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETR 152 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 ++ K + L Y G K L ++ FE++ + + ++++ Sbjct: 153 SVAKSINFGLIYGMGYKTLSQ-----NLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEA 207 Query: 490 PEFAVKDKLIGTACELVKKA 509 + L G + Sbjct: 208 KQNGFIVTLSGRKRYFDFEN 227 >gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023] Length = 155 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTATSQLMR 589 +IS R L + I LPS R L Y K Y + Sbjct: 10 AISTRESQKYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRK 69 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + TYGGKL ENIVQAI+RD L ++ G V+ VHDE ++E P++ SV L + Sbjct: 70 QYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAITEVPESE-SSVDKLNA 128 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + SWA GLPL+ +G+ + Y K Sbjct: 129 ILAEPISWAPGLPLQGDGFSSDFYMK 154 >gi|47215759|emb|CAG05770.1| unnamed protein product [Tetraodon nigroviridis] Length = 462 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 47/372 (12%), Positives = 105/372 (28%), Gaps = 38/372 (10%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E ++ + + +D + + + +L+ + K+L+++ G I Sbjct: 14 YTDMELNMIPVLAVMESHHIHVDKEALKRTSDLLGTKMKQLEQEAH-RAAGEIFLITSNT 72 Query: 240 ALRMYLFLIT-------GIDLVDM---SEGTLK------SILSHSNITQLAKDLILNRLA 283 LR LF L + T + L +IL Sbjct: 73 QLRAVLFERLRLHQQCENKKLPKTLNKQQSTSEAAVQYLKRLLQLQDLHPLPKIILEYRQ 132 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ + + + Q ++ R G + +E T Sbjct: 133 VHKIKSTSVDGILSCMRNKNFQALPRQPLQITKQQRVQGKEEVVVKVHPREMFIPQEGWT 192 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 A + E + R I G V AD +E R+LA + + ++ F Sbjct: 193 FVAAGKEEVVVKVHP------REMFIPQEGWTFVAADFCQVELRLLAHFSSDPELLRIFN 246 Query: 404 NGEDI-YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + + + ++ +V+ E R K + ++ Y G + + L + Sbjct: 247 HPQSDVFTMLASQWKGLSQSEVTSEDREHAKRIVYSVVYGAGRERLSGI-----LGVSAK 301 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + S ++ ++ Q + L+G R + Sbjct: 302 QASQFQDSFLRAYKDVQAFIQKTIQQCHQQGCVLSLMGR---------RRTLPNIHLSDW 352 Query: 523 DLTEGFACVVQE 534 + Sbjct: 353 AVRMQAERQAVN 364 >gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] Length = 853 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 93/757 (12%), Positives = 190/757 (25%), Gaps = 166/757 (21%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDL--------- 57 ET S P QA I + + ++ + + +L Sbjct: 153 ETFSKTPFD-------PHQADICTVSISAKAHESRVVPISHKVGKNIAPELSRDEAREAV 205 Query: 58 -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL---ARTNGLPSSL 109 E + +A N FE + + R ++ + P L Sbjct: 206 LDLMDRYVFTHEPTLKIAVNLAFETKFAARYKRYIL--GRVADPLMMWVRSMQIAAPGRL 263 Query: 110 KNACL-------------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + K + F + + A Sbjct: 264 NSLSKPHTGWGLKTATKKTFGVTMQDFSQLLQKKGVQFFDEIDASTKEGFIYSAEDADYG 323 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Y K +E K L D E + + G + D E Q Sbjct: 324 LQHYHYWKTIIEQIPGYDKWLH---DIEMPFMRVIGIMEFWGMPWNTDTANARYEEALQA 380 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNI 270 ++ E+I ++ LF + ++ +S+ T + L Sbjct: 381 QENASEEIKRIIFEATGEEVAPGKTGKTGSVKLALFNKMKLPILKISDKTGNASLDEEA- 439 Query: 271 TQLAKDLILNR--LASSGSAIL--KLNTLS-----EAVSSDGRLRGTLQFYGASRTGRWS 321 LI R L + +I K + E + D ++ R + Sbjct: 440 ------LIDMRFMLENKLESIDEEKYLAIPLPEGWEDIEPDANYGEPGFNGDITKQERGA 493 Query: 322 GCVFQ-------------PQNLPRQERSEEILTQTIQALNRGETIADPLGLASD------ 362 + + + + + ++ +++ I + A Sbjct: 494 IRIKKREFHPFKDAGIALIEQMMKIQKYTTLISSHIVGRQKYLNPFTDRIHAGYSSFTDT 553 Query: 363 ---------------------CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +RS GK L D +G E R++AW + ++ I+ Sbjct: 554 GRLNSFKPNGQNVPRPDNDDFKIRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIEL 613 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF-KTMASHCGLDLQ 460 F D++ T + P ++K +R K + Y G KT + G+ Sbjct: 614 FNTNGDMHRRTASALTGKPESDITKIERTNAKAGNFGIAYGGTEYALQKTFKTDYGVRKT 673 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + E + + G ++ + + Sbjct: 674 LDECAAIVNAVKTAYPRIPQMQRQAILDARENGYAETIYG---------YKRLLRDINGT 724 Query: 521 WKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 L SA + + + Y + D Sbjct: 725 NSKLRGSDERRAGNTPIQGSAADIMKDCQNKV------------------YDRIGEDTFK 766 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + ++ D++ +HDE++ E D Sbjct: 767 QRQGETDVLFTH------------GS----------------IDMIAQIHDEMIFEMDDD 798 Query: 640 PY--FSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 P G + ++M + P +P+ AE K + Sbjct: 799 PALVEKAGAWIKAVMERPPLPDFPVPVIAEASVGKDW 835 >gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti] gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti] Length = 1987 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 67/510 (13%), Positives = 133/510 (26%), Gaps = 98/510 (19%) Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + + L E + + G+ D + + L E + ++++ E + L Sbjct: 1564 DQLDRTQEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTL 1623 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSG 286 G + T + L + T + +L + LA +I R S Sbjct: 1624 NGGRRLNFASTSEVAAAL----KVPRERNGRVKTCRQVLEKIDSP-LATLVIAYRKIESN 1678 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + + L A+ R+ G + + TGR S Q + Sbjct: 1679 LSRT-IEPLYRAIRDGKRIYGNSYCF--TSTGRISMHEPNLQTV---------------- 1719 Query: 347 LNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 + + DP + RS +S + L+ AD +E VL ++ + + G Sbjct: 1720 VKDFKVEIDPGHVEVFSCRSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGG 1779 Query: 406 EDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 +D++ AK + VS E R K + + Y GAK L++ + Sbjct: 1780 KDVFRGIAAKWNRIEDEALVSDELRNYTKAIVYGVIYGMGAKSMAAE-----LNVDEDMA 1834 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + + + E + L G R + Sbjct: 1835 CTLMEQFHSTYPEIRRYADKVIQVTRERGYIETLTGR---------RRYLPAIHSTDMKK 1885 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + ++ + Sbjct: 1886 RSEAERQAVCTTVQGSAADILKNAILRMMRNLRKYRQT---------------------- 1923 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + + + HDE++ E P V Sbjct: 1924 ------------------------------LRLGQVELVLHM--HDELIFEVPRDQSRKV 1951 Query: 645 GTL-CSLMTKNPSWAKGLPLKAEGYEAKRY 673 + S M LPL+ + + Sbjct: 1952 AKILKSSMENCAK--LSLPLRVKVKMGASW 1979 >gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29] Length = 478 Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 84/565 (14%), Positives = 152/565 (26%), Gaps = 166/565 (29%) Query: 162 YCKRDVEATRELFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Y +DVE EL + L E + G + + + + + Sbjct: 25 YAAKDVEVLCELDRILKDELCQYSLMEAFTLECKALPAMAQMWRTGLPWNKENLAQRKLD 84 Query: 213 IAQERKKLDEDIVKLTDGIIR---------------------------------SSRQTY 239 + K+L ++ ++ D + + Sbjct: 85 YEHDIKELSKEFIRELDSALPEGQKLPRDEDDSFNLRAKDEGSVRAGTKKLKGFNLNSPQ 144 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ L + G+ L +S+ L + LN + + ++ E + Sbjct: 145 QLKSKLSAVLGVKLESVSKNALSEFA----GHHPVVQMYLNWKKAEKRR-QMITSIQEKM 199 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DG ++ + GA TGR + Q +P+ Sbjct: 200 RPDGFVKASYMQLGAE-TGRMTCFNPNNQQIPKD-------------------------- 232 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 R C+ A G +V AD +E R+ A +A + I+AF +GED++ T Sbjct: 233 --KQFRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVTAEAI--- 287 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 R I K L Y GAK + A+ + Sbjct: 288 ------GCTRQIAKSANFGLLYGSGAKGLRNYAAGSNVS--------------------- 320 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + V+ W + +G+ + K + Sbjct: 321 ------------------MTLEEAQKVRSDWFQEFEGIAKWHKKENDKA----------- 351 Query: 540 ARRVANVPRLVMRRHKRDVHIVLP-SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 N + I +P + R + Sbjct: 352 ----NNPNPRFKGKKCGIQFIEIPETGMRRDLPGDANRLTVR-----------------C 390 Query: 599 ENIVQAISRDILCEGMKN----ATKNG---YDIVLTVHDEIVSETPDTPYFS-VGTLCSL 650 VQ IL + + + G I VHDEI+ + TL + Sbjct: 391 NTPVQGAGAAILKQALGKLWPLVREAGEETVRIAAAVHDEILLLVREDAAEEWAATLKQV 450 Query: 651 MTKNP-SWAKGLPLKAEGYEAKRYR 674 M + W +P AE K ++ Sbjct: 451 MEEAEAKWLGEIPALAEVSFGKTWQ 475 >gi|256081122|ref|XP_002576822.1| DNA polymerase I [Schistosoma mansoni] gi|238662107|emb|CAZ33059.1| DNA polymerase I, putative [Schistosoma mansoni] Length = 787 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 70/554 (12%), Positives = 142/554 (25%), Gaps = 127/554 (22%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + G+ ++LD + K + + + K+L+ +L + Sbjct: 289 ELPCQSLLARMESNGFILNLDDLNKCHDSLLKACKQLESVAYRLAGQPF-PMDSPKEISK 347 Query: 244 YLFLITGIDLVD-------------------------MSEGTLKSILSHSNITQLAKDLI 278 LF + + + + T + +N+ L ++ Sbjct: 348 VLFKWLHLPQITDPNDLIMNRKRSQSYLLNGRNRSNHLPKATNTLLSKLTNLHPLPAVIM 407 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRL-----------RGTLQFYGASRTGRWSGCVFQP 327 R + + ++ S RL R + + + TGR + Sbjct: 408 EWRHINGIL-----EKIFNSLVSTCRLIYISSTGDQPLRISPTYDVYTATGRIISIMPNL 462 Query: 328 QNLPRQERSE-----------EILTQTIQALNRGETIADPLGLASDCV-----RSCIIAS 371 Q++P+ + + + L + R A Sbjct: 463 QSVPKDIVIDWSKLHYKSSTVDNNCLNNNSEKWTSPFDQILSELPKSIETIRPRCAFHAP 522 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRA 430 G L+ D +E R+LA+ + + +K + E T A N P + QR Sbjct: 523 VGGLLISGDFCQLELRLLAYFSKDVELLKLLSVVEHASQTLAAHWLNIPHSNQVTDVQRQ 582 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 K + A+ Y G++ Sbjct: 583 QAKQLCYAILYGMGSQTL------------------------------------------ 600 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A + + + + ++ + GV + K Q R+ V Sbjct: 601 --ASQLNVSQQNAQKLIDSFLNTYPGVQKFIKTAVLTAHREGQIKTLNGHIRLLPVLNSK 658 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 G+ I+Q + +I Sbjct: 659 TVFDSGT-------------PYELNCNWSKKYDLRNHFAVIKAEGQAVNIIIQGSASEIA 705 Query: 611 CEGMKNATKN--------GYDIVLTVHDEIVSET-PDTPYFSVGTLCSL-MTKNPSWAK- 659 M + +VL HDE++ E P++ G L M+ Sbjct: 706 KIAMLAVDEAIHSSNIPGNAHLVLHEHDELIYEVFPESSAKQFGELIRQTMSNTSKHCNI 765 Query: 660 GLPLKAEGYEAKRY 673 +PL + + Sbjct: 766 DVPLPVKLRIGNNW 779 >gi|156377033|ref|XP_001630662.1| predicted protein [Nematostella vectensis] gi|156217687|gb|EDO38599.1| predicted protein [Nematostella vectensis] Length = 425 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 57/437 (13%), Positives = 130/437 (29%), Gaps = 43/437 (9%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 GI + + V + K L +KM + + + Sbjct: 9 GITVSGEC-EDPKVASWLLDPGCKEKTL-QHLVGQYASSKMVILEGEVPCGSLTGSLALA 66 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFK--RLIPLSDGERDLWLLDQTINDRGYRID 202 T + V+A + +L + E + + G+ Sbjct: 67 SQNTLSGRVRACTESVLVFSMMKKLRLDLVEDGLDYAFQKVEMPVMQCLVRMELNGFGFS 126 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 +L+ ++ + + L+++ +L + S + + Sbjct: 127 EAECDRLKAILQAKLRTLEQEAYRLANHSF-SLTSPDDVAR------------------E 167 Query: 263 SILSHSNITQLAKDLILNRLAS-SGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTG 318 + ++ L + ++ R + + + ++ L R+ T Q + + TG Sbjct: 168 VLERLKSLHPLPRIILEWRRVNCALTKVVFPVQREKLFHKSLHMSRIYPTSQTH--TTTG 225 Query: 319 RWSGCVFQPQNLPRQ---------ERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 R S QN+PR S + T+ + + + + +R+ + Sbjct: 226 RVSFNEPNLQNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSGMSCAVSMRTAFV 285 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G L+ AD + +E R++A +A + K G D++ V +QR Sbjct: 286 PCAGGVLLAADYSQLELRLIAHLADDSRLRKVLNGGGDVFRMIAGSLAGLEPGSVDDKQR 345 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 K + + Y GAK L+L + ++ + + +Q Sbjct: 346 QRAKQICYGIIYGIGAKALGE-----QLELGEEDASMYIEKFKSRFSGIRRYLKSTVEQC 400 Query: 490 PEFAVKDKLIGTACELV 506 + + L Sbjct: 401 RKTGYVTTITKRRRYLP 417 >gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni] gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 86/260 (33%), Gaps = 36/260 (13%) Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTL 309 T + +L+ IL+ + L + + R+ + Sbjct: 2 KKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSF 61 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P + + +SC + Sbjct: 62 LQTG-TATGRLSSKDPNLQNIPAHGQYAKDY------------------------KSCFV 96 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A +G + D + IE R+LA + ++ + AFAN EDI+ T F + + E R Sbjct: 97 AKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETR 152 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 ++ K + L Y G K L ++ FE++ + + ++++ Sbjct: 153 SVAKSINFGLIYGMGYKTLSQ-----NLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKA 207 Query: 490 PEFAVKDKLIGTACELVKKA 509 + L G + Sbjct: 208 KQNGFITTLSGRKRYFDFEN 227 >gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 374 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 72/488 (14%), Positives = 132/488 (27%), Gaps = 130/488 (26%) Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D +L+ + I + +++ + V+ + +L GI L + Sbjct: 1 MPVDKNLLKNMLTDIQSKYQRMYIEFVRNYGVD---PFSPAKVSNWLVNKVGITLPKTQK 57 Query: 259 GTL---KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG----RLRGTLQF 311 G L L + + L+ R LK R+ + Sbjct: 58 GALSSQDKALKKYEHLKEVRQLMEIRTTKKLLDKLKELNEHTRNDPSDSDTVRIHSQFRQ 117 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA TGR S QN+P +R S Sbjct: 118 IGAP-TGRMSSSKPNLQNIP------------------------------PELRVLFRPS 146 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G ++VAD + IE R+ A ++ I AF G+D++ T + ++++KE+R + Sbjct: 147 KGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEEITKEERQL 206 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + L Y + A + Sbjct: 207 AKAINFGLIYGISPRSLMEYARNN------------------------------------ 230 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + + ++G + ++ E Sbjct: 231 --YGVDISLKEAQDFHDKFFQHYRGFKKWHEETKEKL----------------------- 265 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 R + + RR+ S +QA D+L Sbjct: 266 -NKHRQITVQSLLGRRMKVSRFTD---------------------AVNYPIQASGSDMLK 303 Query: 612 EGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS-WAKGLPLKA 665 + IV VHDEI+ E + + M K K +P++ Sbjct: 304 MAVNFFGILKKDLNAYIVNLVHDEIIVEAKEDITVQAKNILEESMKKAGKILLKKVPVEY 363 Query: 666 EGYEAKRY 673 E K + Sbjct: 364 EANIVKSW 371 >gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b] Length = 190 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 30/211 (14%) Query: 245 LFLIT-----GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF+ GI T + L+ +LI + ++ L + V Sbjct: 2 LFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDALPKLV 61 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + RL T S TGR S QN+P Sbjct: 62 DKNYRLHTTFNQDVVS-TGRLSSTHPNLQNIP------------------------IRST 96 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R+ IA LV AD + E R+ A +AG++ I F N DI+ T + + Sbjct: 97 LGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKI 156 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 P+D+V+ QR KV+ + Y Sbjct: 157 PMDQVTSNQRRNAKVINFGVLYGMSPHGLSA 187 >gi|156122484|gb|ABU50233.1| DNA polymerase [Cyanophage S-CBP1] Length = 586 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 91/724 (12%), Positives = 173/724 (23%), Gaps = 196/724 (27%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLW-DRTEQSAMPSDLLQY 60 L DIET I + ++ D Q + + Q Sbjct: 2 TLIFDIETDGLYNDASC----------IHCIGIHDLNAGETYVFNDVGTQQPITKGI-QL 50 Query: 61 LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D + V HN ++ + K + + T VL+R + L + + Sbjct: 51 LEDAD-LIVGHNIIGYDIPVISKLFPWFSRTNGVLDTLVLSRL--YHTDLLDIDQKRKWK 107 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 ++ +L A + + T A+ + Q +Y +DV TR+L+K Sbjct: 108 HMPLQLYGRHSLEAYGYRLGEYKGSFGKT-ADWKEWSQDMEDYMIQDVNVTRKLWKHFPQ 166 Query: 180 LSDG---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI----- 231 + + E + + G+ D + +L + + E L + K + Sbjct: 167 IPEWVQLEHRVAQILTEQEIYGWYFDENAARELAQTLYTELDDLKGVLRKRYPYVAGREF 226 Query: 232 ---------------------IRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILS 266 S + + + G ++ + +L Sbjct: 227 TPKRVNRSLGYVEGATCTKLVEFSPTSRDHIAWVMKNLHGWKPDKKTKAGKTAIDEIVLK 286 Query: 267 HSNITQLAK--DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + + + + K N + D R+ A+ T R + Sbjct: 287 EIGTEEALQFFRCLEITKQLGMLSEGK-NAWLKLSRKD-RVHHHCS--VATVTHRCAHRN 342 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 +P R AS G +V ADL+GI Sbjct: 343 PNLAQVPSD----------------------------LNFRRLFCASPGHIMVGADLSGI 374 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA A + + R + K + A Y G Sbjct: 375 ELRMLAHY-------LARYDDGRYGDILLHGDIHQENADKIGISRRLVKTVTYAFLYGAG 427 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + L + Sbjct: 428 DQKI---GLSYDQGLSPDKAKQ-----------------------------------KGK 449 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 +++A+ G+ +L + + I Sbjct: 450 EIRQAYMDAIPGLEKLVEATKKAADR---------------------------GFIRSID 482 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK-------NA 617 R + K ++Q+ + I M Sbjct: 483 GRHINVDSSH---------------------KALNMLLQSSAGCIAKRWMVIANDNFPTI 521 Query: 618 TK---NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 + +HDE+ E + T L A +P+ AEG Sbjct: 522 DNEYLAHTHQLAFIHDELQFECLPLYAEDLKTHLEL---CAELAGEYYNLRIPIAAEGKI 578 Query: 670 AKRY 673 + Sbjct: 579 GSTW 582 >gi|308497564|ref|XP_003110969.1| CRE-POLQ-1 protein [Caenorhabditis remanei] gi|308242849|gb|EFO86801.1| CRE-POLQ-1 protein [Caenorhabditis remanei] Length = 927 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 74/521 (14%), Positives = 137/521 (26%), Gaps = 116/521 (22%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 ++F D + E + G D Q Sbjct: 497 EVFAMKRIFDDLKVSAIQSSSEESFHLEMSSCQSVLNMFYTGISFDHSKCNSFITNTRQR 556 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHS 268 + L+E+I +L G + + + +F G+ + S T K IL Sbjct: 557 IELLEEEIWRLAHGKF-NIDSSNEVANVIFHRLGLIYPETSSCKMKQRHLPTNKLILEQM 615 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 IL + L L ++ S R+ + + TGR V Q Sbjct: 616 KNQHKIVGKILEYRHIQHTLTQCL--LPLSIYST-RIH--CRMEMCTATGRILTTVPNLQ 670 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P++ + R AS+G+ L+ AD +E RV Sbjct: 671 NVPKR-----------------------VSTEGLSARQLFKASSGRILISADFKQLELRV 707 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++ + I+ D++ + R + K + L Y G K Sbjct: 708 LAHLSNDSKLIELICADRDLFGELSVEWN---------FSRDVVKQLCYGLIYGMGPKTL 758 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + ++ S F + + + Sbjct: 759 AELTK-----VKVAEAEKMLCSFFSMFPGLYLYLSNKG----TYLYVTG----------- 798 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 V + E + + ++ L S Sbjct: 799 --------VRSYINETKEHVSKEECVQTILGRKKF------------------LKSGL-- 830 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDI 624 +++ R +Q + +I + G I Sbjct: 831 -----------TGEEKARVERVA------VNYTIQGTASEIFKVAIVEIESKIKAYGARI 873 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLK 664 VLT+HDE + E P+ + + M + S +P+K Sbjct: 874 VLTIHDEFLVECPENRTPVISEIIRDCMQSSLSDILRVPMK 914 >gi|90420964|ref|ZP_01228868.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90334742|gb|EAS48518.1| possible DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 798 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 75/483 (15%), Positives = 151/483 (31%), Gaps = 95/483 (19%) Query: 15 PLPKVGVWAYAEQAVITLCAYAWDDEPVK-------LW--------DRTEQSAMPSDLLQ 59 G+ + L +++ + + A+ + + Sbjct: 291 DAEGTGLVWCKGSTRVILNQFSYRPGESFMAPTHPLYYEKVFNDPNPGAKAEALQGQVKR 350 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 +L DE V +AHN F+ + + GI++ T ++A + SL + Sbjct: 351 FLEDERVRKLAHNLKFDHQVSAR-EGIEVRGW-LHDTQLMAFFADENMMSKSLDDCTRVW 408 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +A +D PP D A+ Y D +A L +R Sbjct: 409 VPEMAGYADNFN---MAIDKSKMMDVPPDDILDADGKVVQYGMRNYAGGDTDACLRLAQR 465 Query: 177 LIPLSDGERDLWLLDQTINDR------------GYRIDLDLVLKLQELIAQERKKLDEDI 224 L + + + + I G +D + + L + +AQ ++I Sbjct: 466 LDKILREDPRQYQCYRRIQMPAIIAFAKVVERYGLSVDKEHLRSLADQVAQYTDAKYDEI 525 Query: 225 ----------VKLTDGIIRSSRQTYALRMYLFLI--TGIDLVDMSEGT--------LKSI 264 L G S + +R LF G+ ++ T + S+ Sbjct: 526 VRLIPPALRRDYLRRGEEISFTRDVVMRDILFGKKGFGLTPKVFTKSTAKLPPAQRVPSV 585 Query: 265 LSHSNITQLAKDL---------ILNRLASSGSAILKL------NTLSEAVSSDGRLRGTL 309 + ++ ++ L + + + ++ DG + + Sbjct: 586 STKDHMPYFEDAPGNAGRFVTGYIDFLKQQKLITTYIGSEEKQSGFWQYIAPDGAIYPSY 645 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + + A+ TGR + QN P++ R + Sbjct: 646 KLH-ATVTGRSASDNPNGQNFPKRGRFAKSYN------------------------KVFK 680 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G KLV ADL+ IE R+ AW+A E ++ + DI+ +T A + ++ + Sbjct: 681 ARPGYKLVSADLSQIELRIAAWMANEPEMLRIYRADGDIHASTGAATAGWTDEFFAQHKN 740 Query: 430 AIG 432 + Sbjct: 741 SDA 743 >gi|255087648|ref|XP_002505747.1| predicted protein [Micromonas sp. RCC299] gi|226521017|gb|ACO67005.1| predicted protein [Micromonas sp. RCC299] Length = 953 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 67/514 (13%), Positives = 126/514 (24%), Gaps = 112/514 (21%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-LTDGIIRSSRQTYALR 242 E + + G D V + ++ ++E + DG + + Sbjct: 506 EGKVAAALGQMEHVGLGFDPSAVRAAVGDLRRKLAGIEESAAAAMPDGARVNLASPQQVA 565 Query: 243 MYLFLITGIDLVD------------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L+ + ++ L + L ++ R A+ Sbjct: 566 EALYGTLKLPPPSSNAQQGAKTAQLTTKDDALRSLRDKRLHPLPGLVLEYR------AVS 619 Query: 291 KLNTLSEA---VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 K + + ++ RLR + TGR S Q + + E E L Sbjct: 620 KTIAMCNSYASMARGKRLRCDWN-NTRTATGRLSSTNPNIQAVGKDETGEFSL------- 671 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R A GK L+ AD + IE R+LA +AG+ + Sbjct: 672 -----------------RRAFSAPPGKVLLAADYSQIELRMLAHLAGDRGLVALLRRQIT 714 Query: 408 IYVTTYAKAFNT-----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + + +N P V+KE R K L Y G L Sbjct: 715 DGGDVFERIWNAGRGAPPETPVAKEDRDRAKRTVYGLLYGQGKTGLAEK-----LGCTGD 769 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + F + + +++ G L G + Sbjct: 770 VAQGLINAFFRAFPGVRAFVTRTKERARVEKRVVLPSGRHRPL---------PGFASADQ 820 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 G + + + + R L + G Sbjct: 821 RERAGAERKAVN---------------SLIQGSAADLMKIAMCRWLAAASPVGFEPTTTE 865 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET---PDT 639 T +V +HDE++ E P Sbjct: 866 HADVASTAAT---------------------------LPARLVAQIHDELLFECEDSPTA 898 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 + + + M + +P A+ + + Sbjct: 899 VRAAAQVVAACMERAVP-QLAVPTPAKVSVGRTW 931 >gi|48696692|ref|YP_024986.1| DNA polymerase I [Vibrio phage VP5] gi|40806155|gb|AAR92073.1| DNA polymerase I [Vibrio phage VP5] Length = 633 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 91/680 (13%), Positives = 173/680 (25%), Gaps = 149/680 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + Y + + A D +D EQ L++ V HN+ F+ Sbjct: 27 TECTGLKYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYKGTIVCHNASFD 85 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLP--------------SSLKNACLALNFSEHL 122 + GI +P + T + A SL Sbjct: 86 YRM-SLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYLAKKY---VGA 141 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR------ 176 K E +A G L +Y D E T EL+ Sbjct: 142 QKYAEIYDELAAMFGGKATRKTQMPNLYRAPS--GLVRKYACPDAELTLELWLEQQELIA 199 Query: 177 ---LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 L + ER + RG R+DL+ + + ++ + +L Sbjct: 200 KRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREF- 258 Query: 234 SSRQTYALRMYL--FLITGIDLVDMSEGTLKSIL---------SHSNITQLAKDLILNRL 282 + +R G+ L+ + + +L Sbjct: 259 NPNSPKQVREVFGAKEERGV-WTSRDGTVLERTATGNPCLDADALRAMKDPLAAAVLELR 317 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFY----GASRTGRWSGCVFQPQNLPRQERSEE 338 ++ + L S GR+ + G + TGR S Q +P + + Sbjct: 318 SNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKR-- 375 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--AGED 396 + ++ + G+ + +D+A E R+ A + A Sbjct: 376 ---------------------IAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNP 414 Query: 397 WKIKAFANGEDIYVTTYA-KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +A+A ++ + + P + Q K M L + + G +A Sbjct: 415 AIARAYAENPELDLHQWVGDLMGIPRNASYSGQA-NAKQMNLGMIFNRGDG---AVADSL 470 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ ++ + +++A G + V A+ + Q Sbjct: 471 GM-PWEWCEFTDKKGDLIRYKKA---------------------GPEAKAVIAAYHTQIQ 508 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV L + I RRL + + Sbjct: 509 GVKTLATRAQKIAEERG--------------------------WIQTAHGRRLRFPNGYK 542 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEI 632 K + ++QA + D E ++L HD Sbjct: 543 SY------------------KASGILIQATAADENKENWLRIEDALGSDGSMILNTHDSY 584 Query: 633 VSETPDT---PYFSVGTLCS 649 + + V Sbjct: 585 SMSVDENWKPIWERVKKAVE 604 >gi|48429404|gb|AAT42470.1| PolA [Escherichia coli B] Length = 179 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 32/196 (16%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D+ + L L DE + V N ++R + GI++ + T + + Sbjct: 1 DQISRERALELLKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNS 58 Query: 106 ---PSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + + L + GK + A + G Sbjct: 59 VAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGR 103 Query: 162 YCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T +L ++ P E L + I G +ID ++ Sbjct: 104 YAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHS 163 Query: 211 ELIAQERKKLDEDIVK 226 E + +L++ + Sbjct: 164 EELTLRLAELEKKAHE 179 >gi|326567456|gb|EGE17571.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 835 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 73/572 (12%), Positives = 145/572 (25%), Gaps = 121/572 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L DIET ++G Y+ A+AW + T++ L ++ Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHKGCAFKVTDK----VQLKRFFES 225 Query: 64 ETVMCVAHNSLFERILFKKT-------------LGIDIPSKRWICTSVLARTNGLPSSLK 110 + + + HN+ F+ G+ + T ++A ++ Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L E + A K ++ P N + + K + Sbjct: 282 TQGNILGLKELSHEFV---GNYAIDVKHVLNHPLATVLEYNLKDTLATYWVFNKYKPKML 338 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + I G +++D V+ +++ + + E I Sbjct: 339 SDNQDSIYKTI--MLPSIKTIIQIELHGMPMNMDKVVIVKKQLQNQANDALEQIYASEHV 396 Query: 231 I-------------------------------IRSSRQTYALRMYLFLITGID------- 252 T L + L+ G+ Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSTAHLAILLYDYLGLPILDYTPN 456 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + GT++ ++ H+ + L +L + +A D Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516 Query: 310 QFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 F G + + R S Q LP ++ C Sbjct: 517 SFNLGGTLSNRLSSSNPNLQQLPSGST------------------------YGKTIKQCF 552 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIK-----AFANGEDIYVTTYAKAFNT---- 419 A + V AD +E R+ + + K K A+ Y + + Sbjct: 553 QAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFANQMPDIINTK 612 Query: 420 ----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 I E R K AL Y G + + T+ + + Sbjct: 613 ESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAKEIETNYHKMY 667 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 E +++ +Q + D G Sbjct: 668 EVSDAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699 >gi|326573170|gb|EGE23139.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 835 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 72/572 (12%), Positives = 143/572 (25%), Gaps = 121/572 (21%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L DIET ++G Y+ A+AW + T++ L ++ Sbjct: 181 LACDIETTGL----ELGSELYS-------IAFAWSQHEGCAFKVTDK----VQLKRFFES 225 Query: 64 ETVMCVAHNSLFERILFKKT-------------LGIDIPSKRWICTSVLARTNGLPSSLK 110 + + + HN+ F+ G+ + T ++A ++ Sbjct: 226 YSGVLIFHNATFDIKHIIYHCFMDNPRDFKGMIHGLHTMCRNIEDTKIIAYL----ATNN 281 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L E + A K ++ P N + + K + Sbjct: 282 TQGNILGLKELSHEFV---GNYAIDVKHVLNHPLATVLEYNLKDTLGTYWVFNKYKPKML 338 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + I G +++D V+ +++ + + E I Sbjct: 339 SDNQDSIYKTI--MLPSIKTIIQIELHGMPMNMDKVVVVKKQLQNQANDALEQIYASEHV 396 Query: 231 I-------------------------------IRSSRQTYALRMYLFLITGID------- 252 L + L+ G+ Sbjct: 397 KAVTHELQTKELEKINSKLKTKQHTLDKVKDLQFKPNSIAHLAILLYDYLGLPILDYTPN 456 Query: 253 -LVDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + GT++ ++ H+ + L +L + +A D Sbjct: 457 KQPAVGAGTIEKLIQHTQDDTIISLLTALLEYAKVQKILSTFIPAFEKAQQKDDWHYLHG 516 Query: 310 QFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 F G + + R S Q LP ++ C Sbjct: 517 SFNLGGTLSNRLSSSNPNLQQLPSGST------------------------FGKTIKQCF 552 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIK-----AFANGEDIYVTTYAKAFNT---- 419 A + V AD +E R+ + + K K A+ Y + + Sbjct: 553 QAPDDWLFVGADFNALEDRINTLLTKDPNKQKIWIDGYDAHCFRAYYYFVNQMPDIINTK 612 Query: 420 ----PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 I E R K AL Y G + + T+ + + Sbjct: 613 ESINSIKHKYPELRQESKAPSFALQYGG-----QYFTLMKNCGFSESKAKEIETNYHKMY 667 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 E + + +Q + D G Sbjct: 668 EVSNAWTQRKLEQCAKQGYIDVAFGLRIRTPV 699 >gi|254414114|ref|ZP_05027882.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179250|gb|EDX74246.1| 3'-5' exonuclease domain protein [Microcoleus chthonoplastes PCC 7420] Length = 704 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 87/626 (13%), Positives = 169/626 (26%), Gaps = 107/626 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRT----EQSAMPSDLLQ 59 D+ET S E I L A + V++ D E+S + L Sbjct: 44 FDLETFS----RASTPAIAPETGEIRLIQIAIEQPAVQVIVIDLGWTAKERSRIHQKLES 99 Query: 60 Y---------LRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLART------- 102 L + V V H+ FE R + K + P + T ++++ Sbjct: 100 LGFWTTLQERLANPQVEVVGHSLDFEQRWMLAKY---NFPIRNLRDTKLMSQVYWAGLDP 156 Query: 103 -----NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 +G P SL++ CL L S K S N + Sbjct: 157 WLLKQHGKPHSLESVCLRLGISID---------------KSRQTSDWGWGDLGNGQLSNN 201 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLK 208 F Y D T ++ L P E ++ G +D ++ Sbjct: 202 QF-NYAANDASITIKVHDLLEPRLKEIGVWTSYLIECAASPAFAQMSHYGMPVDEGVLAD 260 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + + L E + + L + + L + L + Sbjct: 261 VTVAYEAAYQSLVEQLGGTFSECLPHLYSPKKLIALINRRFRVTLKSANVDDLSKLWGIP 320 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + ++ ++ + + L+++ V +G +RG GR S Q Sbjct: 321 EVRLISVI------KTTKTYVDYLHSIQAQV-RNGFVRGKYTQINRKGFGRSSCSEPNLQ 373 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N P LT +RS +G V D + + ARV Sbjct: 374 NPPSPTTFPPELTPY----------------NLPPIRSVFRTHSGCIGVWCDASKLHARV 417 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + + I F + F T +K+S+ + E + Sbjct: 418 ATQASLDPELIARFNSPH-------GDIFCTIAEKLSQLEGMGSDWTE---------ENI 461 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + +++ S + + L + + K Sbjct: 462 RRWTLDKHHANYAQASRLRAMSKSVHYGSQNLQGWRTLQKTIRTKSGIVLSDESAKNSIK 521 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 AWR ++ + + E V + + R ++ + R + Sbjct: 522 AWRQTYKVLASFQHSIVEKANH--------DLPSVLGMHLIQSRSKFGLGYVRCLTGRGV 573 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYG 594 + + + ++ G Sbjct: 574 FLPKWRQNVEDGREPKIEGKWKKFNG 599 >gi|48696650|ref|YP_024429.1| DNA polymerase I [Vibrio phage VP2] gi|40950048|gb|AAR97639.1| DNA polymerase I [Vibrio phage VP2] Length = 633 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 91/680 (13%), Positives = 173/680 (25%), Gaps = 149/680 (21%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + Y + + A D +D EQ L++ V HN+ F+ Sbjct: 27 TECTGLKYKVD-KVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYKGTIVCHNASFD 85 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLP--------------SSLKNACLALNFSEHL 122 + GI +P + T + A SL Sbjct: 86 YRM-SLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYLAKKY---VGA 141 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR------ 176 K E +A G L +Y D E T EL+ Sbjct: 142 QKYAEIYDELAAMFGGKATRKTQMPNLYRAPS--GLVRKYACPDAELTLELWLEQQELIA 199 Query: 177 ---LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 L + ER + RG R+DL+ + + ++ + +L Sbjct: 200 KRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREF- 258 Query: 234 SSRQTYALRMYL--FLITGIDLVDMSEGTLKSIL---------SHSNITQLAKDLILNRL 282 + +R G+ L+ + + +L Sbjct: 259 NPNSPKQVREVFGAKEERGV-WTSRDGTILERTATGNPCLDADALRAMKDPLAAAVLELR 317 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFY----GASRTGRWSGCVFQPQNLPRQERSEE 338 ++ + L S GR+ + G + TGR S Q +P + + Sbjct: 318 SNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKR-- 375 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI--AGED 396 + ++ + G+ + +D+A E R+ A + A Sbjct: 376 ---------------------IAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNP 414 Query: 397 WKIKAFANGEDIYVTTYA-KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +A+A ++ + + P + Q K M L + + G +A Sbjct: 415 AIARAYAENPELDLHQWVGDLMGIPRNASYSGQA-NAKQMNLGMIFNRGDG---AVADSL 470 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G+ ++ + +++A G + V A+ + Q Sbjct: 471 GM-PWEWCEFTDKKGDLIRYKKA---------------------GPEAKAVIAAYHTQIQ 508 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 GV L + I RRL + + Sbjct: 509 GVKTLATRAQKIAEERG--------------------------WIQTAHGRRLRFPNGYK 542 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEI 632 K + ++QA + D E ++L HD Sbjct: 543 SY------------------KASGILIQATAADENKENWLRIEDALGSDGSMILNTHDSY 584 Query: 633 VSETPDT---PYFSVGTLCS 649 + + V Sbjct: 585 SMSVDENWKPIWERVKKAVE 604 >gi|282598885|ref|YP_003358435.1| N4 gp39-like protein [Pseudomonas phage LIT1] gi|259048645|emb|CAZ66294.1| N4 gp39-like protein [Pseudomonas phage LIT1] Length = 871 Score = 137 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 80/582 (13%), Positives = 150/582 (25%), Gaps = 118/582 (20%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL---- 58 ++ DIE S + G I +AW++ + + + Sbjct: 185 EISCDIEGFSL-SMFDSG---------IATIGFAWNEHDAVQIQCDYREMIQDENKHHGY 234 Query: 59 --QYLRDETVMCVA----------HNSLFERILFKK-------------TLGIDIPSKRW 93 V+ H + + + G++I + R Sbjct: 235 YEPNAEMREVLKWFFTEYPGRIIYHRANHDVKVLIYTLFMEHDLDKEGMHRGLEIMTPRM 294 Query: 94 ICTSVLARTN-----GLPSSLKNACLAL--NFSEHLTKME---EGKALIARFCKGSIDSP 143 T ++A + SLK+ N+++ K L+ ++ + Sbjct: 295 DDTKIIAYLALNSTADVSYSLKDLGQEHAGNWAQDDIKDIRLITLDDLMKYNAVDAVTTV 354 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGY--- 199 + Q Y + + L+ + R + ++ +N+ Sbjct: 355 WVKNKYYPIMVQDQQDALYHGLFKDSLDLIIQMELVGMPMNPRKITEVNTELNNLRDGYH 414 Query: 200 -------RIDLDLVLKLQELIAQERKKLDEDIV--KLTDGIIRSSRQTYALRMYLFLITG 250 + VL + + KL I + + L + Sbjct: 415 NTVMSHPAVAKVEVLIQTSEMEKANAKLKTIQHPLSKFSHIRFNPNSGPQVARLLHEVLD 474 Query: 251 ID--------LVDMSEGTLKSILSHSNITQLAKDLILNRLASS---GSAILKLNTLSEAV 299 + S GTLK +L+H KDLI + + Sbjct: 475 LPVLDVTATKQPSTSGGTLKKLLNHIKAE-PYKDLIQALMDLGAVEKVISAFMPAFKAGR 533 Query: 300 SS-DGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 DG + F G + +GR S QNLP Sbjct: 534 MKADGMMYLHGSFNLGGTISGRLSSSDPNLQNLPAGST---------------------- 571 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 V+S A G AD A +E R+ A + + KIK + +G D + + Sbjct: 572 --YGKLVKSLFCAPPGFLFGGADFAALEDRINALLTQDPNKIKVYTDGYDGHSMRTFAFW 629 Query: 418 NTPID-------------KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 D KV + R+ K L Y G M + Sbjct: 630 PDKCDGIVDTVDSINSIQKVYPDLRSKAKTPHFLLQYGGSW-----MGLVRQVGFSDEEA 684 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 T+ + + + D+ + + Sbjct: 685 QEIETNYNKLYRVSNEWVAGEIDKATKTGYVELAFNLRLRTP 726 >gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 180 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 14/186 (7%) Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A Sbjct: 2 PIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAA 61 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + F +D+V+ EQR K + L Y L + + F+ Sbjct: 62 EIFGLALDQVTSEQRRSAKAINFGLIYGMS-----EFGLSNQLGISRADAKKYMERYFQR 116 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + +++ E + L G L + + V Sbjct: 117 YPAVQQFMTGIRESASEKGYVETLFGRRLYL---------PEIKSSNAMRRKAAERVAIN 167 Query: 535 GGSISA 540 Sbjct: 168 APMQGT 173 >gi|328873005|gb|EGG21372.1| DNA polymerase theta short isoform [Dictyostelium fasciculatum] Length = 989 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 76/616 (12%), Positives = 166/616 (26%), Gaps = 158/616 (25%) Query: 97 SVLARTNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 +++ + + A K L+ F + S D + Sbjct: 446 MLMSMDIHVKKGIMDPRVGAWLLDPDKYKDTTLDTLVREFSQDKKLSTNVDE-----LNH 500 Query: 156 WQLFGEYCKRDVEATRELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + +C R ++LF R ++ E L ++ + G D Sbjct: 501 YDRSFHHCYRSFVLMKQLFTRFHFNRDLYKIFNEMEMPLLVILAKMEYNGIGFDDATCQN 560 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT---GIDLVDMSE------G 259 + + Q+ + ++ + + S + L+ + I + + Sbjct: 561 TKYEVLQKLQYIEVKARLMVPDLKFSMSSKEDMSNILYNVLRVVDIPKANRGKIVKRHHS 620 Query: 260 TLKSILSHSNITQLA-KDLILNRLASSGSAILKLNTLSEA--VSSDG---RLRGTLQFYG 313 T +IL + A +++ S + ++ L + + D R+ T+ Sbjct: 621 TKAAILEAVPEEKAAFPKMLIEWRKLSHHLLNYVHVLFKFGYYNPDYEMMRIYTTIMQTN 680 Query: 314 ASRTGRWSGCVFQPQ-----------------------------------------NLPR 332 TGR + Q N+ Sbjct: 681 VP-TGRLAMTYPNLQSIANAFTFRESPISFSDVSTNNVSKASSSASQHCSPPYDHHNVTV 739 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +++I +L+ E D L + +R I G + AD + IE R+LA + Sbjct: 740 DYSPSPNESKSIGSLSTLELKEDNCRLITVRIRDSFIPRKGYLFLSADYSQIELRILAHL 799 Query: 393 AGEDWKIKAFANGEDIY--VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 + + + N + + T I+ V+ E+R I K L Y Sbjct: 800 SEDKLLLDGLNNPDFDFFKTMFVQMNKGTRIEDVTAEERDIAKE----LCYG-------- 847 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G+ + + ++K+ Sbjct: 848 --ILYGMGTWSLANKLDRD------------------------------EKEARILKEKL 875 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 ++ +++ + + + V +R + Sbjct: 876 YNTYRDLIKYIDSVKKRYHQVGYVETFYHRKRFLDNN----------------------- 912 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDI 624 T + K +I Q + DI+ + M + K + Sbjct: 913 -------------TRDKVEIEKEKRKAVNSIPQGTAADIIKQAMISIDRIFEEQKTPALM 959 Query: 625 VLTVHDEIVSETPDTP 640 VL +HDE++ E + Sbjct: 960 VLQIHDELLFEVREDS 975 >gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae] gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 97/219 (44%), Positives = 136/219 (62%), Gaps = 8/219 (3%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 M TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GAS Sbjct: 2 MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGAS 61 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372 RTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 62 RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQ 121 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427 GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ ++ Y YA+AF + V+K Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTKA 181 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAA 220 >gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] Length = 160 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 11/163 (6%) Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---- 574 WK L ++ + + M+ + + + LPS R L Y+ + Sbjct: 2 AFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEH 56 Query: 575 GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 G SY+ T T + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+ Sbjct: 57 GALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEM 116 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 117 ITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 159 >gi|308516943|emb|CBW47048.1| N4 DNA polymerase-like protein [Roseovarius sp. 217 phage 1] Length = 874 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 76/580 (13%), Positives = 147/580 (25%), Gaps = 110/580 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61 L DIE S + A + + W+ + D T + Q L Sbjct: 181 LTCDIEGFSLKHF----------DAGVGTITFCWNQHEGIAFEVDNTRTKEEDPVIRQAL 230 Query: 62 -------RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101 R+ + HN ++ + L G+D+ + + T ++ Sbjct: 231 KTFFYRFRESGRKMIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENFEDTQIITY 290 Query: 102 TN-----GLPSSLKNACLAL--NFSEHLTKMEEG---KALIARFCKGSIDSPPYDCTRAN 151 G LK N++ K L+ + + Sbjct: 291 LATNSCAGNELGLKAQAQEFAGNYAVEEIKDITLIDLDKLLEYNLVDGLSTWYVYNKHYQ 350 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD----QTINDRGYRIDL---- 203 + G Y + +L L + LD +++ Sbjct: 351 TMITDLQLGTYENFKEWVVDIIQMQLTGLPVNMDKVVALDKLLTAESEHNIWKMMQTKIV 410 Query: 204 ---------DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI--TGID 252 + + K + + + + + + L+ L+ G+ Sbjct: 411 QGFQYQLEEEALAKKNAKLKTKTVTRKDLGLTKDLEVAYNPGSAPQLQRLLYSKEFLGLP 470 Query: 253 L--------VDMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAV-SS 301 + TL+ +L+ S T+ ++L AS+ L +A Sbjct: 471 VLDLTDSGLPSTGADTLEKLLNQNISEETKDFLKILLEYKASAIILSTFLPAFLKAHPGP 530 Query: 302 DGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DG F G + +GR S QN+P Sbjct: 531 DGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP------------------SSAGGPLKSRL 572 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 + ++ C A G V D +E R+ A + K+K + +G D + F Sbjct: 573 AKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGDQ 632 Query: 421 IDKVSK--------------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 + + R K AL YQG + + Sbjct: 633 MPDIDPSSVESINSIGKKYKPLRQESKAPTFALTYQGTYHTLMQNC-----GFSKEKAQM 687 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + + +Q G Sbjct: 688 IENKYRQMYSVSIDYVNEKLEQATHDGYITVAFGLRVRTP 727 >gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 8/219 (3%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 M TL+ ++ +I + ++L+ RL S ++ K L ++VS DGRLRGT QF GAS Sbjct: 2 MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGAS 61 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372 RTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 62 RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQ 121 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427 GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ ++ Y YA+AFN V+K Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKA 181 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 QR IGKVMEL LGY GG F T A GL+L + ++ Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAA 220 >gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] Length = 154 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 78/153 (50%), Gaps = 6/153 (3%) Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA- 583 + ++ + + + LPS R L Y+ + G SY+ T Sbjct: 1 MQCAVTDAIGHPETAHTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHP 60 Query: 584 -TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 T + R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F Sbjct: 61 VTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAF 120 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L +LM P WA+GLPL AEG+E RYRK Sbjct: 121 NAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 153 >gi|156122486|gb|ABU50234.1| DNA polymerase [Cyanophage S-CBP3] Length = 582 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 86/687 (12%), Positives = 169/687 (24%), Gaps = 184/687 (26%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLW-DRTEQSAMPSDLLQY 60 L DIET I + + ++ D Q + + Q Sbjct: 2 TLIFDIETDGLYNDVTC----------IHCIGIHDLNTKETYVFNDVGTQQPITKGI-QL 50 Query: 61 LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D ++ V HN ++ + +K R + T VL+R + L N+ Sbjct: 51 LEDADII-VGHNIIGYDLPVIRKLYPWFSNVGRVLDTLVLSRL--YHADLLKTDQKRNWK 107 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 ++ +L A + + T + Q +Y +DV TR+L+K Sbjct: 108 HMPVQLWGRHSLEAYGYRLGEYKGCFGKT-TDWKDWSQEMEDYMVQDVNITRKLWKDFPE 166 Query: 180 LSDG---ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG------ 230 + + E + + G+ D +L+ + +E + L + Sbjct: 167 IPEWVQLEHRVAQILTEQEIHGWYFDEPAAWELESTLRRELESLKAVLRNRHPFILGEEF 226 Query: 231 --------------------IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + L + + +E + Sbjct: 227 TPKRPNSTQGYFTGATFTRLKEMNPTSRDHIAYILQKFYDWEPTERTEKGKPVVDEIVLK 286 Query: 271 TQLAKDLILNRLASSGSA-----ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 ++ + + +N + V +D R+ A+ T R + Sbjct: 287 DIGSEIALQFFRCLELTKQIGMLTEGVNAWLKLVRND-RIHHHCS--VATNTHRCAHRKP 343 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 +P + R A+ G +V ADLAGIE Sbjct: 344 NLAQVPAEA----------------------------EFRKLFRATPGMVMVGADLAGIE 375 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA A +G + R + K + A Y G Sbjct: 376 LRMLAHY-------LAQWDGGRYGDVLLNGDIHQENADKIGISRRLVKTVTYAFLYGAGN 428 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + L + Sbjct: 429 QKI---GLSYDQSLSPDKAK-----------------------------------KKGQE 450 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 +++A+ G+ +L + + +I Sbjct: 451 IRQAYMDAIPGLRKLVEATKKAANR---------------------------GYIRAIDG 483 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC-------EGMKNAT 618 R + K ++Q+ + I E + A Sbjct: 484 RHISVDSPH---------------------KSLNYLLQSSAGVIAKRWLALTHEAIIRAD 522 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG 645 + +HDE+ ET + Sbjct: 523 -IKAHQLAFIHDELQFETTPEHVEDLK 548 >gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage] Length = 234 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 8/219 (3%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 M TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GAS Sbjct: 2 MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGAS 61 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372 RTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 62 RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPX 121 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427 GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y YA+AF V+K Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTKA 181 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAA 220 >gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 930 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 96/371 (25%), Gaps = 102/371 (27%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 L G + TGR S QNLPR I A G + Sbjct: 630 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GITAAVAGNDAEEDGDDDLLG 679 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R C +A+ G L+ D IE RVLA + G+ ++A DI+ F Sbjct: 680 FRRCFVAAGGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KP 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 VS E+R++ K + + Y G Sbjct: 738 VSTEERSLAKRVVFGVLYGAGP-------------------------------------- 759 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A + + G+ + + E Sbjct: 760 ------KTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVVEEARANG----------- 802 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 + S R D++ + + ++VQ Sbjct: 803 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 838 Query: 604 AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + D++ M ++ ++ +HDE+V V L S M+ Sbjct: 839 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 898 Query: 655 PSWAKGLPLKA 665 +PL Sbjct: 899 MQLL--VPLSV 907 >gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1257 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 95/371 (25%), Gaps = 102/371 (27%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 L G + TGR S QNLPR I A G + Sbjct: 957 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GIAAAVAGNDAEEDGEEDLLG 1006 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R C +A+ G L+ D IE RVLA + G+ + A DI+ F Sbjct: 1007 FRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KP 1064 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 VS E+R++ K + + Y G Sbjct: 1065 VSTEERSLAKRVVFGVLYGAGP-------------------------------------- 1086 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A + + G+ + + E Sbjct: 1087 ------KTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANG----------- 1129 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 + S R D++ + + ++VQ Sbjct: 1130 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 1165 Query: 604 AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + D++ M ++ ++ +HDE+V V L S M+ Sbjct: 1166 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 1225 Query: 655 PSWAKGLPLKA 665 +PL Sbjct: 1226 MQLL--VPLSV 1234 >gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum] gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania infantum JPCM5] Length = 1257 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 95/371 (25%), Gaps = 102/371 (27%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 L G + TGR S QNLPR I A G + Sbjct: 957 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GIAAAVAGNDAEEDGEEDLLG 1006 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R C +A+ G L+ D IE RVLA + G+ + A DI+ F Sbjct: 1007 FRRCFVATGGCVLLSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KP 1064 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 VS E+R++ K + + Y G Sbjct: 1065 VSTEERSLAKRVVFGVLYGAGP-------------------------------------- 1086 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A + + G+ + + E Sbjct: 1087 ------KTLATHMGVTVDRALHITSLLTNAFPGIDAYHRRVIEEARANG----------- 1129 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 + S R D++ + + ++VQ Sbjct: 1130 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 1165 Query: 604 AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + D++ M ++ ++ +HDE+V V L S M+ Sbjct: 1166 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 1225 Query: 655 PSWAKGLPLKA 665 +PL Sbjct: 1226 MQLL--VPLSV 1234 >gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511] gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511] Length = 730 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 82/629 (13%), Positives = 158/629 (25%), Gaps = 191/629 (30%) Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW--------- 188 + + ++ Y D + + L + + +W Sbjct: 138 EPLANEVDGGNFNYDWIPLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPS 197 Query: 189 --LLDQTINDRGYRIDLDLVLKLQE--------------------LIAQERKKLDEDIVK 226 + I G D + + E + ++ +L E V+ Sbjct: 198 AIVALARIESNGIYAQTDYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVE 257 Query: 227 LTDGII-------------------RSSRQTYALRMYLFLITGIDLV------------- 254 + L+ I GI L Sbjct: 258 EMAVPPAKRDDDIAKLRNKYKNKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDV 317 Query: 255 ------------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SS 301 + L I+ H ++ L+L L + + Sbjct: 318 GKPENKLTWEDYKTDKKALNYIVDHFPDQKVFASLLLEHSLVKTRKNNFTAKLLNFISNK 377 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ G+ G + T R S Q LP + + + Sbjct: 378 DGRVHGSFNATG-TETTRLSSNNPNMQQLPAKTSNPK------------------RFDYQ 418 Query: 362 DCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 ++ A L+ D + +E R+LA AG++ +AF +G D++ T + + P Sbjct: 419 YPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMP 478 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 +DKV E F +A + Sbjct: 479 VDKVPAE--------------------------------------------FRKKAKAVN 494 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + FA K + E + + + A + + E +++G + Sbjct: 495 FGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTL 551 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + + R + K+ + L K Sbjct: 552 QGHRRLIRDAFSKDKQIQNGAL--------------------------------RKSVNT 579 Query: 601 IVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK 653 +Q + +VLTVHD IV + P + +C +M Sbjct: 580 KIQGTGAYCTNMSLIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMARVCKTIMEN 639 Query: 654 NP------SWAKG---LPLKAEGYEAKRY 673 P W P++A+ Y Sbjct: 640 LPIDFLSIEWKGEKTKYPIEADIEIGTNY 668 >gi|157311100|ref|YP_001469095.1| gp096 [Lactococcus phage KSY1] gi|108861440|gb|ABG21639.1| gp096 [Lactococcus phage KSY1] Length = 895 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 68/434 (15%), Positives = 122/434 (28%), Gaps = 69/434 (15%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66 DIET G+ + E ITL Y DDE + + + D+ + + Sbjct: 22 DIETT--------GLDYFTE--KITLVQYGTDDEHQQWY---TEEPTIEDIKEL---KKR 65 Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK---NACLALNFSEHLT 123 HN F+ G+ +P + VL G SL A L Sbjct: 66 TLFWHNGKFDTKFIAYHFGVMLPIHG--DSMVLLHALGYSDSLSLKVAAAKLLGVENWDI 123 Query: 124 K--MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-----ELFKR 176 + ++ K K + + L + + + Sbjct: 124 EHDLKLSKGPDEEASKLKFFEYGLKDVKYTYALMRLLLTGVNSQSDDPEDSKNFNTIDDL 183 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + E + + I G + + + K+++ I Sbjct: 184 QYNVYNNELKAYSAFRYIEMTGTP-----LGDMSKSQDAIDGKIED-IENKWGFRFDWVN 237 Query: 237 QTYALRMYLF--LITGIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLN 293 + + L + K +L H + I + Sbjct: 238 SSDKVGALLSLVDKRLKPGDNGKISVTKEVLTKHIQEVGDFAYDVKEVRKLKKL-IQFFD 296 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + DGR+ QF ++TGR S Q +P+ Sbjct: 297 SW-NKLGHDGRI--FPQFNITTKTGRTSSSNPNLQQVPQDS------------------- 334 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR+ I A G K + D + +E R A+ A E ++A+ NG D++ T+ Sbjct: 335 ---------RVRNIIAAPKGMKFIECDYSQLELRCAAYCAQEPAMMEAYKNGADLHTKTW 385 Query: 414 AKAFNTPIDKVSKE 427 P Sbjct: 386 ESMNGRPFSDDHDM 399 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 45/188 (23%), Gaps = 47/188 (25%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + +A+ + G++ Sbjct: 738 MSQEDADEFHRAFFESYPGLVSWHNACKRFLDEHGY------------------------ 773 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 I P RR V + + + + VQ + DI M Sbjct: 774 --IQSPLGRRRYLPTV---------YSKDWGEKESAYRRSINTPVQGLGSDICVSAMTTI 822 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVG--TLCSLMTKNPSWAK-----GLPLKA 665 + + T+HD I+ + V + +M P K GL L A Sbjct: 823 LQHPEYGKTFFVHGTIHDAILVTAYEDQAEHVAYDIIKKIMEHPPILDKLPTTNGLYLIA 882 Query: 666 EGYEAKRY 673 + + Sbjct: 883 DADVTDSW 890 Score = 46.2 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 9/115 (7%) Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 ++ +I +L Y +K + A + G+D+ Q + + FE + S H Sbjct: 702 RHNDKVSIQGNCNFSLLYGAQSKTLRDYARTNMGIDMSQEDADEFHRAFFESYPGLVSWH 761 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + E +G L + W + + + Sbjct: 762 NACKRFLDEHGYIQSPLGRRRYLPTVYSKD--------WGEKESAYRRSINTPVQ 808 >gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage] Length = 234 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 97/219 (44%), Positives = 135/219 (61%), Gaps = 8/219 (3%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 M TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GAS Sbjct: 2 MQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGAS 61 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIASN 372 RTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 62 RTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAPQ 121 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKE 427 GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ ++ Y YA+AFN V+K Sbjct: 122 GKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTKA 181 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 182 QRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAA 220 >gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] Length = 608 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 103/696 (14%), Positives = 182/696 (26%), Gaps = 164/696 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D+ETR+ G + A + L L + + L Sbjct: 39 ILGLDVETRALPD---TGPRHFGPDAGLRLVQLGTATVAWVLDPLDPAQR--AAIAAVLG 93 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNACLALNF 118 D V H + F+ + L I + +R T ++++ LK Sbjct: 94 DPGRRFVTH-TSFDTLAVWSALAIGL-GQRVADTHLISKLVDPDERAGHGLKTLTARHLD 151 Query: 119 SEHLTKMEEGKALIARFCKGSIDSP--PYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 A + + A+ + + Y +R + +L Sbjct: 152 DGLTLAQTALYARMRALAPPGERAGERWKTWGWAHLPADDEAYVVYVRRLLPVLLDLCGP 211 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E+ L I RG +DL + + I S R Sbjct: 212 FSHLVPVEQWLAAQSVGITIRGLALDLPYTRAYLAQVEADHHAAAALIEAELGCPPTSPR 271 Query: 237 QTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQL-----AKDLILNRLAS 284 +L + + TL ++ + +L + ++ R Sbjct: 272 FA----DWL-DTQHVPGPRTATGRLQVTADTLTALARDLDTGRLTVSDQVRRMLTARGRV 326 Query: 285 SGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + ++ L + A GR+ + A +TGR S Q L + + Sbjct: 327 AATSNTIANLRSFLAAADPAGRVHPQINTLRA-KTGRMSITGPALQTLKKGDPR------ 379 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R C A G L+ D + +E RV A ++ + Sbjct: 380 ---------------------LRHCFQADPGHVLISCDFSQVEVRVTAALSRDPALTDVL 418 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 A+G DI+ T F D +K+QR + T + G Sbjct: 419 ASGVDIHDATARLLFG---DGFTKDQRTLA--------------KRATFGTIYGGG---- 457 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 V WRA + GV Sbjct: 458 --------------------------ARALMNATGATHQVATDVITRWRAAYPGVAAY-- 489 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 S RR+ ++ + Sbjct: 490 ----SARLADHNPVITG------------------------SGRRIPADPLRPYANA--- 518 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-ATKNGYD--IVLTVHDEIVSETPDT 639 VQ+ +RD+L + T++G + L VHDE++ P Sbjct: 519 ----------------NYAVQSTARDLLVTAVHTLVTRHGLHDALWLFVHDEVIVHVPTD 562 Query: 640 PYFSVGT-LCSLMTKNPSWAKGLPLKAEGYE-AKRY 673 V L + MT + G+ + AE + Sbjct: 563 RAAQVAADLQAAMTTSFR---GVAITAEADILGTHW 595 >gi|312377443|gb|EFR24272.1| hypothetical protein AND_11228 [Anopheles darlingi] Length = 2035 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 61/506 (12%), Positives = 140/506 (27%), Gaps = 94/506 (18%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + ++ G+ +D + L E + R+++ D L G + A+ Sbjct: 1601 REMPVHVVLARSEVVGFPVDRTALGALIERLKASRERIATDARLLNGGRKLDFGSSRAVA 1660 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--S 300 L L + L+ + LA +I R S A + L + S Sbjct: 1661 AALRLAASRERPRTVRQVLERL-----DNPLAALVIAYRKIDSNLART-IEPLYRTIQLS 1714 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 ++ R+ G + + TGR + Q + + L ++ + Sbjct: 1715 AESRVHGRSHCF--TSTGRITMHEPNLQTVVKDFTVPAPLAGGMRERRTTDE------EE 1766 Query: 361 SDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 RS ++ + L+ AD +E +L ++ + + A + Sbjct: 1767 HFSCRSTFACNDTTRVLLSADFCQLELCILTHLSQDRRLLAALDGSAVADGAGSRR---- 1822 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + + +L + + +A Sbjct: 1823 --KPQDVFRSLAARWHQLG-------------------------DASEVSDELRTRTKAI 1855 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + + A + ++ + + + + + + + + + + Sbjct: 1856 VYGVIYGMGARAMAAELQMEEESARSLMEQFHRSYPDIRRYQERVIRLTRQLGY------ 1909 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 I + RR + + A ++ R+ Sbjct: 1910 --------------------IETLTGRRRYLPAIGQAATADPAARAEAERQA------VC 1943 Query: 600 NIVQAISRDILCEGMKNATKN-----------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DIL + +N +VL +HDE+V E P V + Sbjct: 1944 TTIQGSAADILKNAIVRMERNLRKYADVLDVGAIQLVLHLHDELVYELPRAQLPKVAKIL 2003 Query: 649 S-LMTKNPSWAKGLPLKAEGYEAKRY 673 M +PL+ + + Sbjct: 2004 RSSMENCAK--LSVPLRVKLKAGDSW 2027 >gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100] Length = 702 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 89/672 (13%), Positives = 163/672 (24%), Gaps = 210/672 (31%) Query: 114 LALNFSEHLTKMEEGKALIAR-------------------FCKGSIDSPPYDCTRANHVQ 154 L F E K E KA + + Sbjct: 67 ETLKFKEDTKKYNEEKANNKYSVLVKPVKPKKGKAPTKAELAYEPLANEVDGGNFNYDWI 126 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW-----------LLDQTINDRGYRIDL 203 ++ Y D + + L + + +W + I G Sbjct: 127 PLEILHPYASGDTDCCLRIHNVLTEIIAKNQKMWFQFANFYPSAIVALARIESNGIYAQT 186 Query: 204 DLVLKLQE--------------------LIAQERKKLDEDIVKLTDGII----------- 232 D + + E + ++ +L E V+ Sbjct: 187 DYMEDINEKYTEEEERLVEEMRKIAEVSELEEQHMELYERGVEEMAIPPAKRDKDIAKLR 246 Query: 233 --------RSSRQTYALRMYLFLITGIDLV-------------------------DMSEG 259 + L+ I GI L + Sbjct: 247 DKYKKKLKFNPNSATDKGKVLYQIMGITLPYDKEHIKESAFDVGKPENKLTWEDYKTDKK 306 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTG 318 L I+ H + L+L L + + DGR+ G+ G + T Sbjct: 307 ALNYIVDHFPDQKAFASLLLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATG-TETT 365 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLV 377 R S Q LP + + ++ A L+ Sbjct: 366 RLSSNNPNMQQLPAKTSDPK------------------RFDYQYPIKRMFQTAFENGALL 407 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + +E R+LA AG++ +AF +G D++ T + + P+DKV E Sbjct: 408 QLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAE---------- 457 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 F +A + + + FA K Sbjct: 458 ----------------------------------FRKKAKAVNFGIAYGETPFSFAPKHD 483 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + E + + + A + + E +++G + + + R + K+ Sbjct: 484 MSVEEAEDIFQRYFANKPNIKTF---IDETHREALRDGFVDTLQGHRRLIRDAFSKDKQI 540 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + L K +Q + Sbjct: 541 QNGAL--------------------------------RKSVNTKIQGTGAYCTNMSLIYI 568 Query: 618 T------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNP------SWAKG---L 661 +VLTVHD IV + P + +C +M P W Sbjct: 569 DQYIQDNNMKSKLVLTVHDSIVVDCPPEEVEIMARVCKTIMENLPIDFLSIEWKGEKTKY 628 Query: 662 PLKAEGYEAKRY 673 P++A+ Y Sbjct: 629 PIEADIEIGTNY 640 >gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus] Length = 299 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 90/316 (28%), Gaps = 43/316 (13%) Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 S +R + G ++ AD + +E R+LA ++ + I+ G D++ + A+ Sbjct: 18 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 77 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 D V + R K + + Y GAK + +++ S ++ Sbjct: 78 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGE-----QMGIKENDAASYIDSFKSRYKGI 132 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + ++G R G+ Sbjct: 133 NHFMRDTVKNCRKNGFVETILGR---------RRYLPGIKDDNPYHKAHAERQAINTTVQ 183 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + V + + + R S + N T L + + G Sbjct: 184 GSAADIVKIATVNIQKQLETF------RSTFKSHGHRESMLQNDRTGLLPKRKLKG---- 233 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSW 657 M + G+ I L +HDE++ E + V + M Sbjct: 234 ---------------MFCPMRGGFFI-LQLHDELLYEVAEEDVVQVAQIVKNEMECAIK- 276 Query: 658 AKGLPLKAEGYEAKRY 673 + LK + + Sbjct: 277 -LSVKLKVKVKIGASW 291 >gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 145 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 5/150 (3%) Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F Sbjct: 1 NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 60 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 P+D V+ EQR K + L Y L++ + FE + Sbjct: 61 GLPLDSVTGEQRRSAKAINFGLIYGMS-----AFGLSRQLNIPRKEAQKYMDLYFERYPG 115 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + Q E + L G L Sbjct: 116 VLEYMERTRAQAKEQGYVETLEGRRLYLPI 145 >gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured gamma proteobacterium HF0070_03O15] Length = 454 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 78/565 (13%), Positives = 146/565 (25%), Gaps = 170/565 (30%) Query: 163 CKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +D+E EL + L E + G + + + + + Sbjct: 2 LAKDIEVLLELDQVLERKLRNAQLDRAFTLECRALPAMAQMWRVGLPWNREELDQCRIDY 61 Query: 214 AQERKKLDEDIVKLTDGIIR---------------------------------SSRQTYA 240 + K+L + ++ D + + + + Sbjct: 62 EDDIKELGNEFIRELDNDLPSGKKLPRNEDGSFNLRAKDQGSKRLGTKKYAGFNIKSSKQ 121 Query: 241 LRMYLFLITGIDLVD--MSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSE 297 L L L+ G V+ K L + + L+ + + ++ + Sbjct: 122 LLEKLELVLGYTPVNNDGKPSVAKDALKNCAADSPTIQTLMTWKRREKRRQ--MIESIQD 179 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +S+DG +R + GA TGR S Q +PR Sbjct: 180 KMSNDGFVRASYMQLGAD-TGRMSSIKPNNQQIPRDS----------------------- 215 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R C+ A G K+V AD + +E R+ A +A + AF GED++ T + Sbjct: 216 -----EFRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGEDLHDYTAEQM- 269 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 R I K L Y GA+ + A G+ Sbjct: 270 --------GCDRQIAKSANFGLLYGAGAEGLRKYAGSSGV-------------------- 301 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + ++ W + G+ +++ + + Sbjct: 302 -------------------IMTNDEAVKIRDNWLTTYSGIRDWQREM-NYLSRSTEGDEW 341 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 R + R ++ + Sbjct: 342 PETRVPVSNMRRFLKGDLNRTTVR------------------------------------ 365 Query: 598 TENIVQAISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDT-PYFSVGTLCS 649 +Q IL + N I VHDE++ + L + Sbjct: 366 CNTPIQGAGAAILKCALGNLWDKVKETGEDKVRIAAAVHDELILLVKEDLADDWAEILKT 425 Query: 650 LMTKNP-SWAKGLPLKAEGYEAKRY 673 M W +P AE R+ Sbjct: 426 TMENAEAKWLDDVPALAEVSIGDRW 450 >gi|66821457|ref|XP_644204.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4] gi|60472150|gb|EAL70103.1| hypothetical protein DDB_G0274421 [Dictyostelium discoideum AX4] Length = 519 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 67/538 (12%), Positives = 133/538 (24%), Gaps = 155/538 (28%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKL----DEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G D + E I + K++ + KL + + + Sbjct: 1 MEIEGVCCDTSKLDNCSEKILKRIKEINCSVYNEDSKLIREPKINLNSPQQVLDWFGKNL 60 Query: 250 -GIDLVDMSEGTL--KSILSHSNITQLAKDLIL---NRLASSGSAILKLNTLSEAVSSDG 303 + ++ TL + + + + D I N + + + ++ ++ Sbjct: 61 ENYKITSSNKETLAIERVKFLNCNNKKVVDFIDSVSNVRKLTKLNSSYIKIILKSNRTNN 120 Query: 304 ---RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 + G + TGR S Q+LPR L + + Sbjct: 121 LKFQFSCLWNQTG-TTTGRLSSTKPNFQSLPRNSTKLTKLNNIDFDDDDNFNNINNNNNN 179 Query: 361 SDCVRSC-------------------------------------IIASNGKKLVVADLAG 383 ++ ++ I+ G LV D Sbjct: 180 NNGEKNLYTLLNNDNDGDDDEDDDNIDELNSYNNNNNIINIRNSFISREGYSLVALDYNQ 239 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAK-AFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A + + I+ F +G+D+ ++ + V KE R K + + Y Sbjct: 240 IELRIMAHYSKDKHLIEYFESGKDVINMMASRLIDGVDPNNVKKEIRDKVKRIVYGILYG 299 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + Sbjct: 300 IQKNSLHKL--------------------------------------------LGVSLDE 315 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + + K + V K ++ G ++ Sbjct: 316 AQEHINNFNLKFEEVSSFIK-----INSQIKNGKILTIGNRI------------------ 352 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 RR + +++ S + +I+Q S DI+ M N Sbjct: 353 ---RRFQDHSSIIPSTSSSSSLSSSPIQAI------NSIMQGSSADIIKMAMINIMNELL 403 Query: 623 ----------------------DIVLTVHDEIVSETPD----TPYFSVGTLCS-LMTK 653 VL VHDE+V E PD + L M + Sbjct: 404 LPLSKLREFIGVNSKGDVVGTPRFVLQVHDELVFEIPDQLLSDESIRLDLLIKYQMER 461 >gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001] gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001] Length = 1757 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 109/717 (15%), Positives = 179/717 (24%), Gaps = 217/717 (30%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +D+ET S L A + I L + PS L+ +L Sbjct: 1146 LDLETCSATQLWAP---AVPGRPFIRLVG--TEAG---------IDTDPSSLVPWLASGG 1191 Query: 66 VMCVAHNSL-FERILFKKTLGIDI----PSKRWICTSVLARTNGLP-------------- 106 + +AHN F+ + + G+D+ + I T VLA P Sbjct: 1192 RL-IAHNGFGFDYLALARHHGLDLLQAAEEGKLIDTMVLALALDPPKPPVDGKLSGGQIA 1250 Query: 107 --SSLKNACLALNFSEHLTKMEEGKALIARFCK--------GSIDSPPYDCTRANHVQAW 156 SL K + K L K +++ Y NH Sbjct: 1251 RLYSLDRCAERAGV---PGKTNDLKKLARDAAKAHGHTGKPKQLEAIGYGLIPRNHPD-- 1305 Query: 157 QLFGEYCKRDVEATRELFK------RLIPLSDGERDLW-LLDQTINDRGYRIDLDLVLKL 209 + Y + DV A R ++ +L P + E + L I G R+DL L Sbjct: 1306 --YLAYLQGDVAACRAVYDALVPDGQLSPYARREMRVMGRLVTGITLHGTRLDLQLTQSR 1363 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI--------------TGID--- 252 + I +++ +V + A L + Sbjct: 1364 YDAIEARKEECRSRLVADYGLPTM-TSSGAAAANPLSCKGAAEAITKAAADVGLVLPLTA 1422 Query: 253 --LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGT 308 S+ L +L L S + + L + SDGR+ Sbjct: 1423 TGKPSTSKDALGPLLEQVREQGNQTQTELLETILSLTGARSVYGTAL-DHCQSDGRIHPQ 1481 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + AS GR+S ++ R+ Sbjct: 1482 VAPLQAS--GRFSLTNPGITVFGKRGGRVTE-------------------------RAIF 1514 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + + +L+ ADL+ I+ R +A A + ++ F G D + A Sbjct: 1515 LPDADDHRLLAADLSQIDMRAMAAHAQDPAYLELFQPGRDAHSEIAAAV---------GL 1565 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R+ K + Y L Sbjct: 1566 SRSDAKAIGHGWNYGMSVNGMVRHGISQAL------------------------------ 1595 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 E + R ++ + E A Sbjct: 1596 ---------------AEQFDQGMRRSFPQLVAWRDQIRERAA------------------ 1622 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 S + L D + R T G L Q +R Sbjct: 1623 ----------------SGQLL-------DNGFGRMMRPNPARAHTQGPALMG---QGTAR 1656 Query: 608 DILCEGMKNATKNGYDIVLT----VHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAK 659 D++ M + +V VHDE+V P + M WA Sbjct: 1657 DLM---MLALLRLPLWLVPQLRFLVHDELVFSVPVARLDEAGEQILQAM--TFDWAP 1708 >gi|66812036|ref|XP_640197.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4] gi|60468189|gb|EAL66199.1| hypothetical protein DDB_G0282679 [Dictyostelium discoideum AX4] Length = 1459 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 84/722 (11%), Positives = 156/722 (21%), Gaps = 238/722 (32%) Query: 51 SAMPSDLLQYLRDETVMCVAH----NSL-----FERILFKKTLGIDIPSKRWICTSVLAR 101 + + ++DE+++ V + + ++ I + + A Sbjct: 771 EEKLNFMKNIIQDESIVKVVYFCQESIKPFIKYYDWINLRNCW----------DPMIGAW 820 Query: 102 TNGLPS------SLKNACLALNFS---------------------------------EHL 122 S+++ L Sbjct: 821 LLESDLLSTKKVSIESLAHFLKLKSLNNNNNNNNNNNNNNNNNNNNNNNQNNNNLIFTEK 880 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K + K S Y+ +H W + Y + L Sbjct: 881 ELNYILKRESLLYDKDKDTSSNYNNYLYDH---WLVLKVYNVISISLF---EFDLNFSFS 934 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG----------II 232 E L + + G ++ + + I++ K+L E + K Sbjct: 935 NEMRLIPILSKMELEGICCNIGKLDHYLKRISEFTKELKESVNKDDGDDDDDNNFKRFEE 994 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNRLASSGSAI 289 + +L G+D+ S+ TL + Q I L S Sbjct: 995 FKLGSFKEVSGWLNQH-GVDIKSTSKETLIQQKRLNINNQKVVTFIDRVLFYRRLSALKG 1053 Query: 290 LKLNTLS-------------EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +S ++ G + TGR S Q +PR S Sbjct: 1054 HYIEPYLLKYTNTTTTTKTRSNTNSTFQISCQWNQTG-TATGRLSSSEPNLQTIPRTSTS 1112 Query: 337 EE-------------------------------------------ILTQTIQALNRGETI 353 L N Sbjct: 1113 LINPTTATTTTTTTSTNNDLNDLDDLDDLDYNGNDGGSLDPDFIQALQDDDDNNNINNNN 1172 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R+ I+ G LVV D +E R++A + + I+ F +G D+ Sbjct: 1173 NNDDDDNIINIRNSFISREGFSLVVLDYNQVELRIIAHFSRDKHLIEYFESGSDVINMMA 1232 Query: 414 AKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + + D + ++ +V G+ Sbjct: 1233 VRLSDRDDLDVNNVDKETRDRV------------KRIVYGILYGI--------------- 1265 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 Q + K + K GV + Sbjct: 1266 ---------------QAFSLGKLLNIPIYKASDHIKNFYFKFDGVSNFIQITKSNAEKSH 1310 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 R + Sbjct: 1311 VVPTLGKRIRKLDSKFKT------------------------------------------ 1328 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGY---------------DIVLTVHDEIVSETP 637 K +I+Q S DI+ M + +L VHDE+V E P Sbjct: 1329 ---KAVNSIIQGSSADIIKLAMITIMNELFLPLLNLNSNNNNKIPRFLLQVHDELVFEVP 1385 Query: 638 DT 639 D Sbjct: 1386 DE 1387 >gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major] gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] Length = 931 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 57/371 (15%), Positives = 94/371 (25%), Gaps = 102/371 (27%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 L G + TGR S QNLPR I A G + Sbjct: 631 TLHPNFLQEG-TDTGRLSCVEPNLQNLPRN---------GITAAVAGNDAEEDGEEDLLG 680 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R C +A++G L+ D IE RVLA + G+ ++A DI+ F Sbjct: 681 FRRCFVATDGCVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KP 738 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 VS E+R + K + L Sbjct: 739 VSTEERRLAKRVVFGLL------------------------------------------- 755 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A + + G+ + + E Sbjct: 756 -YGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEARTNG----------- 803 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 + S R D++ + + ++VQ Sbjct: 804 ---------------FVRTLSGRLRYLPDIRSTVLSRRSYAERQ---------AFNSVVQ 839 Query: 604 AISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + D++ M ++ ++ +HDE+V V L S M+ Sbjct: 840 GSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRKELLPMVVPLVSSAMSHA 899 Query: 655 PSWAKGLPLKA 665 +PL Sbjct: 900 MQLL--VPLSV 908 >gi|222435728|ref|YP_002564156.1| gp58 [Mycobacterium phage Phlyer] gi|222088281|gb|ACM42222.1| gp58 [Mycobacterium phage Phlyer] Length = 605 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 106/701 (15%), Positives = 190/701 (27%), Gaps = 186/701 (26%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTE-QSAMPSDLLQ 59 + DIET G+ I +AW DD + + + Sbjct: 36 TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGI-----DIPSKRWICTSVLARTNGL----PSSLK 110 L + + HN+ F+ + G+ +I + + T +LAR + SL Sbjct: 85 DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143 Query: 111 NAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L S+ M+ G I +G P A L E Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203 Query: 165 RDVEATRELFKRLIPL---SDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213 R + L +D E + L DQ I R G +D + + + QE Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQEIVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHS 268 ER + + + G+ + + + YL I + K +L Sbjct: 264 DAERIQHEALLAAH--GLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + L + + K+ + GR + GAS TGR + + + Q Sbjct: 322 DHPLTIAQRKLAEVDKVLGYLTKVE---RQAAVTGRCHPQVGVLGASATGRMAYSMPELQ 378 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 P+ R II +G+ L D + IE Sbjct: 379 QFPKDARP-------------------------------IITDDGQGLTSIDWSQIEPVT 407 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A +AG+ + F GED+Y ++ P+ K Sbjct: 408 MANMAGDVGFLIPFEAGEDLYE-PIQRSCGLPMTKE-----------------GRDIAKV 449 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 +A+ G+ + + +K + + +++ Sbjct: 450 VLLATMYGMGVNGLALKIKH------------------------------TVESAQQIRR 479 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 A + + I+ + R L Sbjct: 480 QMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGRIL 513 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 D VQ + D+L + + G L + Sbjct: 514 PVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMEEAGLGDHLQL 554 Query: 629 --HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663 HDE++ +T + +M P WA +P+ Sbjct: 555 AMHDELIVDT-----EVADDVQQIMLTPPDFLIRWAGRVPV 590 >gi|328553017|gb|AEB23509.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] Length = 763 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 88/783 (11%), Positives = 193/783 (24%), Gaps = 182/783 (23%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY------AWDDEPVKLWDRTEQSAMPS 55 +D ET G+ ++ + + + D+ +++ ++ + Sbjct: 36 KLCVLDSETT--------GLHIIKDKPFMWVFGWMLPKEKRTDEIKGRVFAFDSKAEILL 87 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----KRWICTS---------VLART 102 ++ L + VM V HN ++ + GI K T V AR Sbjct: 88 QVI-ALTKKCVMTVGHNVKYDLHMLIN-GGISEKVVYGLKNITDTMGLCRFSFDAVSARD 145 Query: 103 NGLPSSLKNACLAL-------------------------------------NFSEHLTKM 125 G LK + Sbjct: 146 GGDVLGLKKVSEKYIDPKAGEFEKEVKKELRKINDAKRNILKELLKPYKGWGLGKIKEAY 205 Query: 126 EEGK-ALIARFCKGSIDSPPYDCTR----ANHVQAWQLFGEYCKRDVEATRE-------- 172 + K + F K F +Y + D + E Sbjct: 206 KVKKRNEMDYFTKEKKQRWLKVPEEIENVYFKWMEENPFADYSEVDRDIMMEYVHSDGIY 265 Query: 173 ------------LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L ++ + + E L + + G ++D+ + + E +KL Sbjct: 266 TLELVEFTYSTVLKRKQKAILEQENKLIIELLKMERVGMKVDMPYLHSCFKKCEDEIQKL 325 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 E++ G + Q + Y G + LK + LI Sbjct: 326 YEELW-GIVGEYFTVSQGTVIADYFEKKLGERPETTDKSFLKK-----HKDDRVSQLITR 379 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ + E D + + +GR Q P++ E Sbjct: 380 LRRLEKWQSTYISRIIEVAQYDNHFYTQYGQFN-TVSGRLGSDA---QQFPKERILTEEG 435 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIA----- 393 + G+ + + R I G K+ DL+ IE R A Sbjct: 436 ELYEKENGEGKAPIEYEIFSP---RRAFIVEGGNYNKIAYFDLSQIELRAQANYTVLLKK 492 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK-EQRAIGKVMELALGYQGGAK------ 446 + +A+ + + T + ++ ++ ++ L Sbjct: 493 PDLNLCRAYMPFKCTHYITGEEFRYDTKEERARWYEKKEDGTSVWLLENGESWTPTDVHS 552 Query: 447 ----------VFKTMASHCGLD-LQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFAV 494 FK + + + ++ + KS F + + + + + Sbjct: 553 ETSHNTLMALAFKCVDKYKQYEHEKESPVDEKSFKKFWRYIGKMFNFMRNYGGGAKKASE 612 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 ++ + W V K + A V + + + + Sbjct: 613 ALEVSMEIANALVSGWSNTFPEVSYYQKQV---AAKVQKNSYATNMYGRVYFLSNTDK-- 667 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 K+ +VQ D+L + Sbjct: 668 ---------------------------------------AYKVGNYLVQGSCADMLKGYV 688 Query: 615 KNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668 +N + +HDE+ + + +M W + +P+ + Sbjct: 689 IRIGEFLRENNCKTLPLANIHDELQFLVHKGEEWIFPHIKRIMED-VEWMQ-VPVVVDLE 746 Query: 669 EAK 671 + Sbjct: 747 ITE 749 >gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1264 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 57/388 (14%), Positives = 101/388 (26%), Gaps = 108/388 (27%) Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + ++ + + + L G + TGR S QNLPR + Sbjct: 953 AYTMQADEVILPATGYATLHPNFLQEG-TDTGRLSCVEPNLQNLPRNGITSTEEEGEEDL 1011 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 L R C +A+ G L+ D IE RVLA + G+ +KA + Sbjct: 1012 LG---------------FRRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKALTSSA 1056 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F VS E+R++ K + + Y G Sbjct: 1057 DIHQTIAEVVFKK--KPVSTEERSLAKRVVFGVLYGAGP--------------------- 1093 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + + G+ + + Sbjct: 1094 -----------------------KTLATHMGVTVDRALHITSLLTNAFPGINTYHRRVIA 1130 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + S R D+ + + Sbjct: 1131 ETRANG--------------------------FVRTLSGRLRYLPDICSTVLSRRSYAER 1164 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSETPD 638 ++VQ + D++ M ++ ++ +HDE+V Sbjct: 1165 Q---------AFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVSLLSQIHDEMVFMVRK 1215 Query: 639 TPYFS-VGTLCSLMTKNPSWAKGLPLKA 665 + V L S M+ +PL Sbjct: 1216 EHLRTVVPLLSSAMSHAMQLL--VPLSV 1241 >gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 132 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 61/131 (46%), Positives = 77/131 (58%), Gaps = 6/131 (4%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQA 604 M+ + + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA Sbjct: 1 MQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQA 60 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLK 664 +SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL Sbjct: 61 VSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLA 120 Query: 665 AEGYEAKRYRK 675 AEG+E RYRK Sbjct: 121 AEGFETHRYRK 131 >gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705] gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705] Length = 690 Score = 130 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 38/321 (11%), Positives = 92/321 (28%), Gaps = 32/321 (9%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ ++L D + R + LG+ +P + + + + + Sbjct: 362 EVAKWLGDSNRDLTVFDGK--RNIVAAHRLGLHLPDIAF-DVLLASYLINPDENSNDLGK 418 Query: 115 ------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + GK + + + + LF + Sbjct: 419 IAEDHDYHDLPRD--EDVYGKGAKRQVPEDKLLFEQFARKSQ------ALFALRPDLTED 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L +D E L + + +G ++ + + +Q K L+E I Sbjct: 471 LAKQEQTDLF--TDMEMPLARVLAEMEIQGITLNAQTLKDMGTEFSQSIKVLEEKIYGEA 528 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L+ IL+ + Sbjct: 529 GVKF-NLNSPKQLGEVLFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDYRGWA 587 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L +A D ++ ++TGR S QN+P + + Sbjct: 588 KLNSTYVVGLLKAQMPDHKIHTRYLQT-LTQTGRLSSVDPNMQNIPAR-------DEGKI 639 Query: 346 ALNRGETIADPLGLASDCVRS 366 + + +R Sbjct: 640 IRKPLSLLIRIGRFLARNIRK 660 >gi|91224626|ref|ZP_01259887.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|91190514|gb|EAS76782.1| DNA polymerase I [Vibrio alginolyticus 12G01] Length = 680 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 77/663 (11%), Positives = 146/663 (22%), Gaps = 178/663 (26%) Query: 43 KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--A 100 + D T+ P L L T +AH++ E LG+ + T + A Sbjct: 109 YVIDLTKFKE-PKLLQPLLDLPTTY-IAHHAKAELHCL-WQLGLT-EPRTIWDTCIAERA 164 Query: 101 RTNGLP----------------------------SSLKNACLAL--NFSEHLTKMEEGKA 130 R GL +L + +L K + + Sbjct: 165 RYLGLHVFDNDRVFDSENAEICARAEHAENNRIRYALNTVASRYDIHHRFNLVKSDLQHS 224 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 I + A Y + + T L L E Sbjct: 225 FIDYDSGEFTREQIH----YAAEDAIVAAKLYLPQMQQLT--LQGCYHHLITVEMPWVTT 278 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + + G +D + + + + L + ++ + + + + Sbjct: 279 NAAMEWHGVSVDREKCNAVLNASTPKLETLRSQLAQMG---LDNPNSHQQKETFFRQLNL 335 Query: 251 IDL--VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 +D +L A L+ L + SD R+ Sbjct: 336 LDHFNKGGKYSFKLQLLKDLAHIHPAIGLLAEFSKVQAIERDILLR-PTIIGSDSRVHPE 394 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S LP +R I Sbjct: 395 HKQLEV-VTGRQSCASPNLLGLP------------------------------GAMRPLI 423 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----------GEDIYVTTYAKAF 417 I G + AD + IE + A + + I F + Sbjct: 424 IPKKGNGIGEADYSQIEVAITAAVYSDKNLIAKFNAGDIYTVMAQEFYAIDLDEEDRQCD 483 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + K++R I K L + Y Sbjct: 484 SDTFKHKHKDKRDIMKTCVLGILYGLSPFGL----------------------------- 514 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 + ++ + + + A + + + + A S Sbjct: 515 ---------------GSRLEISELEAKQLMNRFLAMFPTLKHMMETAPQQAAYRGYVSTS 559 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 R + + R + Sbjct: 560 TGLHRHRSNNGALSRHETNWM--------------------------------------- 580 Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMT 652 Q + + + +VL +HD + E P VGTL ++M Sbjct: 581 VNMPAQGTAAALFKLAGNRLYQLYKPYNAKLVLAMHDAFIFEAPLDHMEEVGTLTTNVMI 640 Query: 653 KNP 655 + Sbjct: 641 QAV 643 >gi|298528005|ref|ZP_07015409.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans ASO3-1] gi|298511657|gb|EFI35559.1| DNA-directed DNA polymerase [Desulfonatronospira thiodismutans ASO3-1] Length = 914 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 71/473 (15%), Positives = 137/473 (28%), Gaps = 78/473 (16%) Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE---- 184 K L + ++ Y D TR +F + + Sbjct: 417 KVLKKLPPEILDIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQYRKMEEDYTQI 476 Query: 185 --------------------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + +G RID + + + + +L + I Sbjct: 477 KRLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDFIARVDAKIPELKDRI 536 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLK---SILSHSNITQLAKDL 277 I S + L+ LF + V ++ T K +L N + +DL Sbjct: 537 FSSIGRKINLSSSSGDLKRVLFKEKRYEPVKYTKTGDFSTDKNSMEVLYEKNEDEFIRDL 596 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ R +N + DGRL +L +G + T R S QN P Sbjct: 597 LILRRVEKVRETYFIN-WRGEIEYDGRLHFSLNQHG-TATYRLSANK-GLQNAP------ 647 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 L V+S + + D+A E RVL + ++ Sbjct: 648 -----------------AYLKEIDLNVKSLFLPDSEEYDIFDLDIANAELRVLCGYSKDE 690 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK----------VSKEQRAIGKVMELALGYQGGAK 446 I+AF G DI+ T AK + ++ + R +GK + Y GA Sbjct: 691 TLIEAFNQGLDIHSLTAAKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGTVYSMGAT 750 Query: 447 VF-KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 K + + + + + FE++ + + + + G Sbjct: 751 SLSKQLWAESRIKVSEDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHRFVYTYTGR---- 806 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 R + + + F + ++ + N + + + + Sbjct: 807 -----RRRFPMLGVDNHQKFKAFRQAINCRIQTTSADIVNTNLVDLDDAIKPL 854 Score = 90.5 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 88/745 (11%), Positives = 180/745 (24%), Gaps = 127/745 (17%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTE-------Q 50 M KL +D ET S +P Y + + + +W +D E Q Sbjct: 203 MKKLVSVDTETTSLEP--------YRLEEKMIAISLSWKKGQGLAFYFDHHEHGLNKEKQ 254 Query: 51 SAMPSDLLQYLRDETVMCV-AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG----L 105 + S L + L D A N+ F+ G+DIP + +L Sbjct: 255 DQVLSKLEEVL-DPEYTVTCAANAKFDYKWLNYRYGLDIPFFDF-DVMLLEHLLDEDKKN 312 Query: 106 PSSLKNACLALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 LKN E KAL +F K + + + + Sbjct: 313 EYGLKNLTRDYIPELAGYDEELEKALADIQNKFDKEAKEKHEQALQDYFTKWQEKTDEQR 372 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + R+ + L + E+ + N R + L +++ + ++ Sbjct: 373 KELLKDWVRQRYIDLPEIEGLEK----IKTVQNGRKKAVSKAYTKSLFKVLKKLPPEIL- 427 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 I S L + M + I + + + + Sbjct: 428 --------DIPGSVARKVNYGDLPREILLPYAAMDAMVTRVIFTEQ-----YRKMEEDYT 474 Query: 283 ASSGS----AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L ++ + + Y R R F + R + Sbjct: 475 QIKRLEIAEKTTDLAKTLRFMTMPLAPKISEMEYQGIRIDREKLEDF----IARVDAKIP 530 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW- 397 L + + + + D R ++ + + Sbjct: 531 ELKD--RIFSSIGRKINLSSSSGDLKRVLFKEKR--------YEPVKYTKTGDFSTDKNS 580 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG-----------YQGGAK 446 + ED ++ + + G++ Y+ A Sbjct: 581 MEVLYEKNEDEFIRDLLILRRVEKVRETYFINWRGEIEYDGRLHFSLNQHGTATYRLSAN 640 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 A ++ +++ + E ++ + LI + + Sbjct: 641 KGLQNAPAYLKEIDLNVKSLFLPDSEEYDIFDLDIANAELRVLCGYSKDETLIEAFNQGL 700 Query: 507 KKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + E + V + L + Sbjct: 701 DIHSLTA-AKISDFTYEEIKAAKEDKTSEQHKLRQLGKKINFGTVYSMGATSLSKQLWAE 759 Query: 566 RRLV----------------YSDVKGDCSYLNTATSQLMRERTYGGK------------- 596 R+ Y VK TY G+ Sbjct: 760 SRIKVSEDEAKQYLNKFFEEYPKVKEYMEKTRAFARAHRFVYTYTGRRRRFPMLGVDNHQ 819 Query: 597 -------LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645 +Q S DI+ + + G ++LTVHD I+ + P Sbjct: 820 KFKAFRQAINCRIQTTSADIVNTNLVDLDDAIKPLGGRVLLTVHDSILFQLPKDTAGVTE 879 Query: 646 TLCSLMTK---------NPSWAKGL 661 L ++T+ W + Sbjct: 880 LLDQVITENTKNKFPWLPVEWKYDV 904 >gi|32442301|gb|AAP82221.1| DNA polymerase [Podovirus GOM] Length = 399 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 68/439 (15%), Positives = 116/439 (26%), Gaps = 72/439 (16%) Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 T VL+R ++A + TK+ +L A + Y T + Sbjct: 1 DTLVLSRLVYPNRRERDA--IHRWKYLDTKLYGSHSLKAWGQRLDFAKGDYGQTEDAWEK 58 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLK 208 + EYC +DVE T +L+ L P E++L ++ G D+D Sbjct: 59 LSEAMVEYCIQDVELTHKLYGILKPKLQSRKALSLEQELTVICNRQERHGIPFDVDRAQL 118 Query: 209 LQELIAQERKKLDEDIVKLTDGII--------------------RSSRQTYALRMYLFLI 248 + R +L +++ + R + L Sbjct: 119 FYSDLCGRRSELQTELIDKFGWWYTGELREPKTKPSYSKLIKVVFNPRSRQHIAKRLKDF 178 Query: 249 TGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI--LKLNTLSEAVSSD 302 +S+LS AK L L + + + + + Sbjct: 179 YNWKPTEFTPSGEPKVDESVLSKLEYP-EAKLLTEYLLVNKRISQLAEEDQAWLKL-ERN 236 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ G + G S T R S +P Sbjct: 237 GRIHGRVNTMG-SVTSRCSHSHPNLAQIP-----------------------SVSAPYGK 272 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 R A G + + D++G+E R LA + F NG+ + Sbjct: 273 ECRELFCAPEGFRFLGVDISGLELRCLAHY------MALFDNGDYGKKLLEDDIHTVNQN 326 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 R K A Y G + + + + K F A Sbjct: 327 AAGLSTRNQAKTFIYAFLYGAGDEKIGS------IVGGSSEEGAKLKKRFLSQIPALEKL 380 Query: 483 LWMQDQYPEFAVKDKLIGT 501 + + L G Sbjct: 381 RNAVKKKAQKGYLKGLDGR 399 >gi|282857717|ref|ZP_06266926.1| DNA polymerase [Pyramidobacter piscolens W5455] gi|282584387|gb|EFB89746.1| DNA polymerase [Pyramidobacter piscolens W5455] Length = 656 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 98/712 (13%), Positives = 169/712 (23%), Gaps = 157/712 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L DIET DE R + +P + + Sbjct: 2 LIFDIETDGLLDATTKVHCLTIYDTET--------DESRLYSSRGDYPQIPVGVERLAAA 53 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH- 121 + V HN F+ K P + T ++R +L + L+F+E Sbjct: 54 DCV--CGHNVLAFDIPALTKVYPSFAPKGEVVDTLTISRLIWT--NLAD----LDFTEIR 105 Query: 122 ------------LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K+ +L A + + + T + + + Y ++DV Sbjct: 106 RAKTPAQPMFFFPKKLVGSHSLKAWGYRLGVLKGEFGET-TDWQEWSEEMCAYNRQDVVV 164 Query: 170 TRELFKRLIPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 TR L++R+ D E + G+ + + + +A+ R++L ++ Sbjct: 165 TRALWERIQEQDYSQTAIDLEHQFQKIILQQEQNGFPFNQEKAVLYYSQLAKRREELTQE 224 Query: 224 IVKLTDGII-----------------------------RSSRQTYALRMYLFLITGIDL- 253 + ++ + + L G + Sbjct: 225 LQRIFPPEDKGDWFVPKVNNAKRGYVKGERVWRARITAFNPGSRKDIAERLRETRGWEPQ 284 Query: 254 ---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGT 308 + + +LS + AK L L N + V DGR+ G Sbjct: 285 EYTERGTPKVDEEVLSALDWP-EAKALSEYFLVQKRIGQLAEGNNAWLKLVGRDGRIHGH 343 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + GA TGR + +P RS Sbjct: 344 VITNGA-VTGRCTHVSPNMAQVP-----------------------AVGVPWGAEFRSLF 379 Query: 369 IASNGKKLVVADLAGIEARVLAWIA------GEDWKIKAFANGEDIYVTTYAKAFNTPID 422 A G ++ AD +G+E R LA KI A D Sbjct: 380 YAPPGWSVLGADASGLELRCLAHFMARYDGGAYARKILEGDIHWANAQALGLVAEGEKKD 439 Query: 423 KVSKEQRA----IGKVMELALGYQGGA---KVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 + + K AL Y G + L + K T Sbjct: 440 PENPYHMWARNKVAKRFIYALNYGAGDHKLGELVELTDDQAKALLAAAPKSKIDQTSARL 499 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + + A K + + L +D+ Sbjct: 500 AKQFQYKTITF---KDIAQSLKGAELRA-----TFMKNLPALASLIEDVKRVAKKRGYLI 551 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 G R G + T G Sbjct: 552 GLDKRRLNVRSIHSAFN----------------TLLQSAGAIAVKKATCVLWDDLTTAGL 595 Query: 596 KLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 D + V VHDE + VG + Sbjct: 596 -----------AD-------KVQQ-----VAHVHDEYQLLVKEGEEEHVGQI 624 >gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 138 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%) Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F Sbjct: 1 EGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGL 60 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 P+D V+ EQR K + L Y L++ + FE + Sbjct: 61 PLDSVTGEQRRSAKAINFGLIYGMS-----AFGLSRQLNIPRKEAQKYMDLYFERYPGVL 115 Query: 480 SHHLWMQDQYPEFAVKDKLIGTA 502 + + Q E + L G Sbjct: 116 EYMERTRAQAKEQGYVETLEGRR 138 >gi|260878762|ref|ZP_05891117.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308091309|gb|EFO41004.1| T7 DNA polymerase [Vibrio parahaemolyticus AN-5034] Length = 683 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 103/776 (13%), Positives = 180/776 (23%), Gaps = 198/776 (25%) Query: 1 MSK-LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDD-EPVKLWD---RTEQSAMP 54 M++ L DIET E + A D E D Q + Sbjct: 1 MNERLCYDIETDGL----------IEEVTKLHCIAIINVDTLEEALYADSLVMMTQGTIK 50 Query: 55 SDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART----------- 102 L + ++ + + HN ++ + K G ++P + T V +R Sbjct: 51 DGLDRL--NKASLTLGHNIIKYDHPVINKLTGYELPKDKSFDTLVASRLVFSNIKDIDQG 108 Query: 103 ---------NGLPSSLKNACLALNFSEHLTKM--EEGKALIARFCKGSIDSPPYDCTRAN 151 SL+ + L + + A D Sbjct: 109 NSGKYTLGKLFGSHSLEAWGIRLG-GQQKMEYAPVIDPAQPVYDPTVKPKDAKKDPRWK- 166 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRID 202 + G+YC +DV ELF+RL E + + G++ D Sbjct: 167 GSIFTPMMGDYCMQDVRVNVELFRRLERKIHQLGYARSMLLEHEAAWVLAQQERNGFKFD 226 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII------------------------------ 232 + +KL +A R+ L +++ G Sbjct: 227 EEKAIKLLGRLAGRREYLYNKLIETFGGWWVSDGVSVPARTINYKDPTKPSRVQGAPFTK 286 Query: 233 -----RSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + L +SIL + A+ + L Sbjct: 287 VKWVDFNPSSRRHIIKVLTDRGWTPQEFTPSGEAKVDESILKELDFP-EARLMAEWFLVQ 345 Query: 285 SGS--AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 V DG +RG++ GA TGR + +P Sbjct: 346 KRLGQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVPSCSA------- 397 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV---LAWIAGEDWKI 399 R +G L+ +D +G+E R + I Sbjct: 398 ----------------EYGAECRELFTVPDGWYLLGSDASGLELRCLANFMARYDDGKYI 441 Query: 400 KAFAN------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 N P + + +E R K A Y GA+ Sbjct: 442 DVVLNGDIHWSNAQAAGFIPKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE------L 495 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + + + E E V+K + Sbjct: 496 TGQQVGWTEEEYLNWKAKGAHKPIINRFKRQGKPWTREKI----CNILKGEEVQKNFMKG 551 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + L + E I RR+ Sbjct: 552 LPALKNLIDECKELHKEQGY--------------------------IEGIDGRRIYTRSA 585 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD------ 623 ++Q + + K G Sbjct: 586 HAS---------------------LNTLLQGAGALVCKAWIVEIEKLAIAEGLKHGIDGD 624 Query: 624 -I-VLTVHDEIVSETPDTP-YFSVGTLCSL-MTKNPSWAKGL-PLKAEGYEAKRYR 674 + VHDE+ +G LC + MT + L A+ K ++ Sbjct: 625 FMYCAWVHDEVQIACRTKEIAERIGQLCQVAMTNVEKEFNFVCRLDADFDIGKSWK 680 >gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56] Length = 452 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 50/209 (23%), Gaps = 59/209 (28%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---------PVKLWDRTEQS--- 51 + D ET S A QA + + A D ++ Sbjct: 256 VAFDTETTSLD----------AMQAELVGFSMAIADNVADPTGTKIRAAYVPLAHKNGVG 305 Query: 52 ---------------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 L L D V+ VA N ++ +L K+ I +K + T Sbjct: 306 DLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRY---GIETKSFDDT 362 Query: 97 SVLARTNGLP---SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + L + K G Sbjct: 363 MLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSG---------------RANVTFD 407 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + Y D + T L+ L P Sbjct: 408 LVDIDRATHYAAEDADVTLRLWLVLKPRL 436 >gi|237651508|ref|YP_002898979.1| DNA polymerase [Roseophage EE36P1] gi|220898140|gb|ACL81397.1| N4 DNA pol-like protein [Sulfitobacter phage EE36phi1] Length = 876 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 87/591 (14%), Positives = 160/591 (27%), Gaps = 131/591 (22%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61 L DIE S + Y A I + WD + D T+ A L Q L Sbjct: 182 LTCDIEGFS--------LKHY--DAGIGTITFCWDQHNGIAFEVDNTQTKAEDHVLRQAL 231 Query: 62 -------RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101 R + HN ++ + L G+D+ + W CT ++ Sbjct: 232 KTFFYRYRATGRRTIYHNICYDAYVLIYQLFMDHILDQEGLLEGLDVMLENWECTQLITY 291 Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLF- 159 A L + A+ + + + + + W ++ Sbjct: 292 LATNS----CAGNELGLKAQAQEFAGNYAVEDIQDITQIELAKLLEYNLVDGLSTWYVYN 347 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE--- 216 Y + E++ L + + + G +++D V+KL + E Sbjct: 348 KHYQTMINDQQYEIYTGLFKDAVKD------IIQMQLTGLPVNMDKVIKLNNQLGAESEH 401 Query: 217 --------------RKKLDEDIVKLTDGII-------------------RSSRQTYALRM 243 +L+ED +K + + + L+ Sbjct: 402 NVWKMMQTKIVQGFVYQLEEDALKKKNEKLKTKVVTRADLGSTQDLMVAFNPGSAPQLQR 461 Query: 244 YLF--LITGIDL--------VDMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILK 291 L+ G+ + TL+ +L+ S T+ +++L AS+ Sbjct: 462 LLYSDEFLGLPVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTF 521 Query: 292 LNTLSEAV-SSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L +A DG F G + +GR S QN+P Sbjct: 522 LPAFLKACPGPDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP------------------ 563 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 + ++ C A G V D +E R+ A + K+K + +G D + Sbjct: 564 SSAGGPLKSRLAKLIKECFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGH 623 Query: 410 VTTYAKAFNTPIDKVSK--------------EQRAIGKVMELALGYQGGAKVFKTMASHC 455 F + + R K AL YQG Sbjct: 624 SLRAYGYFGDQMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNC--- 680 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + ++ + +Q G Sbjct: 681 --GFSKEKAQDIENKYKKMYKVSIEFVEKKLEQATRDGYITVAFGLRVRTP 729 >gi|326919514|ref|XP_003206025.1| PREDICTED: HAUS augmin-like complex subunit 3-like [Meleagris gallopavo] Length = 1077 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 66/575 (11%), Positives = 143/575 (24%), Gaps = 128/575 (22%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + + + + F +++ T L+ +L + + L Sbjct: 588 KLEQQSEAKASGLEDENFTTSEFRSHFDRLQSLNLKITTSLYGKLGNIF-----TFCLII 642 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM-YLFLI-TG 250 + I + AQ + I ++++ + L TG Sbjct: 643 KMEHYTSYIGCGISEVPLSDAAQRIMSALQSIPTGVQTSRKNNQSKEKTKEDKLGDKDTG 702 Query: 251 IDLVDMS----------------EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + S E + + + + ++ + Sbjct: 703 LKNEKASTLSLGYEEKRELIANIEEAVAFVTTMIFLDGSSQLNTEQHQNLIMNLQKLYTI 762 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + G + T G + TGR S Q + + + TI Sbjct: 763 MMGLAHDLQGFICPTWNQTG-TVTGRLSSKHPNIQGISKHPVRIKKKQYIKGKEEEIVTI 821 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + R+ ++ G + AD + IE R+LA ++ E +K F E + T Sbjct: 822 SP---------RALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQEPETADIFTS 872 Query: 414 --AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 ++ P ++V + R K + Sbjct: 873 LASQWKGIPSEQVKQTDREQAKRIV----------------------------------- 897 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + + A + +++ K++ V + K Sbjct: 898 ---------YSVVYGAGKERLAECLGITPLEASCFIESFMQKYKKVHEFTKKTIGQCQNK 948 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 + R+ + +++ L T Q R+ Sbjct: 949 GYVVSIM--------------------------GRKRLLANIHSQDYKLRT---QAERQA 979 Query: 592 TYGGKLTENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV 644 +VQ + D+ M ++ +HDE++ E D+ Sbjct: 980 ------VNFVVQGSAADLCKMAMVEIFTSVVVSPTLTARLIAQIHDELLFEVEDSQIQEF 1033 Query: 645 GTLCS-LMT-----KNPSWAKGLPLKAEGYEAKRY 673 L M +PLK K + Sbjct: 1034 SALVKRTMESLQQTTALEVPLKVPLKVLLTTGKSW 1068 >gi|237651592|ref|YP_002899062.1| DNA polymerase [Roseophage DSS3P2] gi|220898062|gb|ACL81320.1| N4 DNA pol-like protein [Silicibacter phage DSS3phi2] Length = 876 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 87/581 (14%), Positives = 157/581 (27%), Gaps = 111/581 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61 L DIE S + Y A I + WD + D T+ A L Q L Sbjct: 182 LSCDIEGFS--------LKHY--DAGIGTITFCWDQHNGIAFEVDNTKTKAEDHVLRQAL 231 Query: 62 -------RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLAR 101 R + HN ++ + L G+D+ + W CT ++ Sbjct: 232 KTFFYRYRATGRRMIYHNICYDAYVLIYQLFMDHILDQEGFLEGLDVMLENWECTQLITY 291 Query: 102 TN-----GLPSSLKNACLALN-----FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 G LK E L+ + + Sbjct: 292 LATNSCAGNELGLKAQAQEFAGNYAVEDIQDITQIELPKLLEYNLVDGLSTWFVYNKHYQ 351 Query: 152 HVQAWQLFGEYCKRDVE--------------ATRELFKRLIPLS--DGERDLWLLDQTIN 195 + Q F Y + + +L + E ++W + QT Sbjct: 352 TMINDQQFEIYTGLFKDAVKDIIQMQLTGLPVNMDKVIKLNDQLGAESEHNVWKMLQTKI 411 Query: 196 DRG--YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF--LITGI 251 +G Y+++ + + K E + + + + + L+ L+ G+ Sbjct: 412 VQGFVYQLEENALKKKNEKLKTKVVTRVDLGSTQDLMVAFNPGSAPQLQRLLYSDEFLGL 471 Query: 252 DL--------VDMSEGTLKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAV-S 300 + TL+ +L+ S T+ +++L AS+ L +A Sbjct: 472 PVLDLTDSGLPSTGADTLEKLLNQNISEETKEFLNILLEYKASAIILSTFLPAFLKACPG 531 Query: 301 SDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DG F G + +GR S QN+P Sbjct: 532 PDGWHYLFGNFRLGGTLSGRLSSNNPNLQNIP------------------SSAGGPLKSR 573 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 + ++ C A G V D +E R+ A + K+K + +G D + F Sbjct: 574 LAKLIKKCFEAPPGWLFVGLDFDSLEDRISALQTKDPEKLKVYTDGYDGHSLRAYGYFGD 633 Query: 420 PIDKVSK--------------EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 + + R K AL YQG + Sbjct: 634 QMPDIDPSSVDSINSIAKKYKPLRQESKAPTFALTYQGTFHTLMVNC-----GFSKEKAQ 688 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + ++ + + +Q G Sbjct: 689 DIENKYKKMYKVSIEYVEKKLEQATRDGYITVAFGLRVRTP 729 >gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes HL025PA1] Length = 112 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 11/112 (9%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET SP PL K GV+ YAE + + Y+ D PV++ D +P ++L Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERI----LFKKTLG-----IDIPSKRWICTSVLAR 101 L D V+ AHN+ FER+ ++ + +W CT V + Sbjct: 61 AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMVWSA 112 >gi|194303251|ref|YP_002014665.1| gp54 [Mycobacterium phage Phaedrus] gi|194150983|gb|ACF34018.1| gp54 [Mycobacterium phage Phaedrus] Length = 605 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 105/701 (14%), Positives = 189/701 (26%), Gaps = 186/701 (26%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTE-QSAMPSDLLQ 59 + DIET G+ I +AW DD + + + Sbjct: 36 TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGI-----DIPSKRWICTSVLARTNGL----PSSLK 110 L + + HN+ F+ + G+ +I + + T +LAR + SL Sbjct: 85 DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFSLPDVTVSKSLT 143 Query: 111 NAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L S+ M+ G I +G P A L E Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203 Query: 165 RDVEATRELFKRLIPL---SDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213 R + L +D E + L DQ R G +D + + + QE Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHS 268 ER + + + G+ + + + YL I + K +L Sbjct: 264 DAERIQHEALLAAH--GLEGGAGKGKKIVEYLAEIGQLPADWPRTPTGGLKATKDLLDGF 321 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + L + + K+ + GR + GAS TGR + + + Q Sbjct: 322 DHPLTIAQRKLAEVDKVLGYLTKVE---RQAAVTGRCHPQVGVLGASATGRMAYSMPELQ 378 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 P+ R II +G+ L D + IE Sbjct: 379 QFPKDARP-------------------------------IITDDGQGLTSIDWSQIEPVT 407 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A +AG+ + F GED+Y ++ P+ K Sbjct: 408 MANMAGDVGFLIPFEAGEDLYE-PIQRSCGLPMTKE-----------------GRDIAKV 449 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 +A+ G+ + + +K + + +++ Sbjct: 450 VLLATMYGMGVNGLALKIKH------------------------------TVESAQQIRR 479 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 A + + I+ + R L Sbjct: 480 QMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGRIL 513 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 D VQ + D+L + + G L + Sbjct: 514 PVDDGGVFR-------------------AVNYTVQGSAYDVLASTIVRMERAGLGDHLQL 554 Query: 629 --HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663 HDE++ +T + +M P WA +P+ Sbjct: 555 AMHDELIVDT-----EVSDEVQQIMLTPPDFLIRWAGRVPV 590 >gi|322786085|gb|EFZ12696.1| hypothetical protein SINV_15346 [Solenopsis invicta] Length = 1172 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 55/371 (14%), Positives = 98/371 (26%), Gaps = 77/371 (20%) Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 P + A V W + + E L L + E + + Sbjct: 867 MDVQSSLPGEFRSAAEAVLTWHMMDNVTSKLEELDPAL---LYTFREVEMRIVTTLACME 923 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ++L + +L +I+ E + L+ L S +M Sbjct: 924 LSGIGVNLKSLQELSAVISDEMQSLETKAYNLAGRKFNFSSSKEVGQMIY---------- 973 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 L + +D R+RG + Sbjct: 974 --------------------------------------PLLKLAQNDSRIRG--NCITCT 993 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P+ VR + + G Sbjct: 994 VTGRVSMHEPNLQNVPKD-------------------FNFADNNLVISVRMAFVPALGNI 1034 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD +E R+L + + K DI+ AK N ++V+ E R K + Sbjct: 1035 MLSADYCQLELRLLTHFSQDSVLCKIMKQPGDIFKNIAAKWNNVTEEQVNNEMRQRTKQL 1094 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + Y G K L + + S + + ++ Sbjct: 1095 CYGMIYGMGVKSLAE-----NLCVSEPEAQEFLESFMGAYPGIYKWLNDVLEEAHRDGYV 1149 Query: 496 DKLIGTACELV 506 L+G +L Sbjct: 1150 ATLLGRRRQLP 1160 >gi|48697456|ref|YP_024841.1| Pas55 [Actinoplanes phage phiAsp2] gi|47679674|gb|AAT36803.1| Pas55 [Actinoplanes phage phiAsp2] Length = 1415 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 83/603 (13%), Positives = 163/603 (27%), Gaps = 113/603 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET + L Y E A + + A A DD PV + S + D+ +R Sbjct: 826 TFDLETGDAERL-------YVEDGQAYVRIGAVAHDDRPV--IELG-GSTVAEDVAARIR 875 Query: 63 DETVMCVAHNSL-FERILFKKTLGIDIPS-------KRWICTSVLARTNGLP-------- 106 HN + F+ + + + R + AR P Sbjct: 876 QGA-TITGHNIMAFDLPALVRAEAMTMDEIHDLADEGRLFDGLLAARLLDPPMARDKGVD 934 Query: 107 ----SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L ++ E D + +LF Y Sbjct: 935 ATRKYDLGTLAVSYGLGE-KYTDLSKPLAKKYGGDWGQIPVDTDDPDPERAEDARLFRTY 993 Query: 163 CKRDVEATRELFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 +D E +R L RL E + L I G+ +D L+ + + Sbjct: 994 MVQDAELSRRLHARLLEELGGTVPEYLTREHRVAALAAQIRHNGFLVDQPLLTERVAEVD 1053 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL----------------ITGIDLVDMSE 258 Q + + + + + +++ Sbjct: 1054 QRKAESLAWLAEHAGVPLANAKGVAYKSPLASTGGKEALEAALRAAGATSFWRTPNSGQF 1113 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSG-------SAILKLNTLSEAVSSDGRLRGTLQF 311 T + H + L R + ++ TL + +S DGR+ + F Sbjct: 1114 DTSGEHMKHLA--REYHHLPKVREIAKHVFRIVGARSV--YQTLMDNMSPDGRVHPKIGF 1169 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGRWS L ++ R+ ++ Sbjct: 1170 DQA--TGRWSVTRPGLTVLGKRGGRHVE-------------------------RAVLLPD 1202 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G+ L+ ADL+ ++ R +A ++ + I+ + + ++R Sbjct: 1203 PGEVLMSADLSQVDMRAVAGLSQDLAYIEMLKKDDPHAEIAKEL-------FGTADRREE 1255 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 K + Y G K G +++ S E + + ++ Sbjct: 1256 AKAIGHGWNYGRGIKAISE-----GQEIEPALVRRFDASMRERFGRLVEWQTEVRAVAEA 1310 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + D G + + ++ ++ G RR+ + R + Sbjct: 1311 GQLLDNGFGRLMRADPQRAHTQGPALMG-----QGAARDIMMTGLLRLDRRILPMLRAQI 1365 Query: 552 RRH 554 Sbjct: 1366 HDE 1368 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 9/139 (6%) Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + EG I V + R R V R + + D + + R Sbjct: 1270 KAISEGQEIEPALVRRFDASMRERFGRLVEWQTEV-RAVAEAGQLLDNGFGRLMRADPQR 1328 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV-LTVHDEIVSETPDTPYFSV-GTL 647 T G L Q +RDI+ G+ + ++ +HDEIV P V + Sbjct: 1329 AHTQGPALMG---QGAARDIMMTGLLRLDRRILPMLRAQIHDEIVFSVPVAEAEEVGRAV 1385 Query: 648 CSLMTKNPSWAKGLPLKAE 666 ++ W +G+P+ A+ Sbjct: 1386 VEALS--FEW-RGVPILAD 1401 >gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705] gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705] Length = 191 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 53/208 (25%), Gaps = 44/208 (21%) Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 +A + + A + + + ++ V +++ + Sbjct: 17 RRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKAREDG 76 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 RR + L R Sbjct: 77 YVETLFH--------------------------RRRYLPQIHSRNFNLR---KFAERTAM 107 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 +Q + DI+ M K ++L VHDE++ E P +G Sbjct: 108 ------NTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQ 161 Query: 647 LC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 L +M S A +PLK E + + Sbjct: 162 LVPKIMDSAVSLA--VPLKVESHYGPTW 187 >gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes HL030PA1] Length = 112 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET SP PL K GV+ YAE + + Y+ D PV++ D +P ++L Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERI----LFKKTLG-----IDIPSKRWICTSVLAR 101 L D V AHN+ FER+ ++ + +W CT V + Sbjct: 61 AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQWRCTMVWSA 112 >gi|313233190|emb|CBY24305.1| unnamed protein product [Oikopleura dioica] Length = 1902 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 76/545 (13%), Positives = 153/545 (28%), Gaps = 141/545 (25%) Query: 121 HLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K K I + + ++D+ T + L Y L Sbjct: 1456 ISMKDYAMKHNFIRKNERKALDNGEPRLTLS------VLRRCYLGVKKILEDRN---LEN 1506 Query: 180 LSDGERDLWLLDQTINDRGYRIDL----DLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 E + + +++ G + L L+ + K+ + K + Sbjct: 1507 KFIAEMEHAEIIFQMSENGMPFSESASEKTIKSLSTLMDRLAIKMKKHAPKGMKRDSLNF 1566 Query: 236 RQTYALRMYLFLITGIDL--VDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSA--IL 290 R Y++ +S K +L + ++LI R A + + Sbjct: 1567 NHLLDQRKYVYDFLKCQPLEGKVSLSVSKEVLEVLEEKEPRIRNLIEFRRAQKAFSDLLT 1626 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + S D R+ T +RTGR S Q + + + Sbjct: 1627 Y-----KNASRDDRIYSTPVL--INRTGRISMDNPSLQMVQNEFECCGKII--------- 1670 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR+C A+ K + D +E RVLA ++G++ +F + ED +V Sbjct: 1671 ------------KVRNCFRANPKKIFISVDYRQLELRVLALLSGDEGLQASFIDHEDPFV 1718 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + K +++S QR K + + Y G K T Sbjct: 1719 SIGRKWLK--RERISVAQRTQVKGLVYGVIYGMGNKTLST-------------------- 1756 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + + + + + + G+ + D+ + Sbjct: 1757 ------------------------TLGVSIEEAKNISSEFMSSYPGMQKFLVDVDKSA-- 1790 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 +++ RR + + TS+ R Sbjct: 1791 ------------------------SSNLYTETLIGRRRSFDN----------YTSRAARV 1816 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ G A + +VL +HDE++ E ++ + Sbjct: 1817 A------VNTKIQGSAADIVKIGTVRAARKIKETGINAKLVLQIHDELLFEVEESQKGLL 1870 Query: 645 GTLCS 649 + Sbjct: 1871 EDILK 1875 >gi|119952216|ref|YP_950517.1| DNAP [Enterobacteria phage N4] gi|117650935|gb|ABK54408.1| DNAP [Enterobacteria phage N4] Length = 859 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 99/670 (14%), Positives = 181/670 (27%), Gaps = 112/670 (16%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLL 58 L +DIET S + + + A+ D EP++ + + L+ Sbjct: 183 LAVDIETFSLKHYDCGIGTITFCWNKHE----GIAFPVDYEPIEGATEAPYGRQVHNMLV 238 Query: 59 QYLRDETVMCVA-----HNSLFERILFKKTL-------------GIDIPSKRWICTSVLA 100 + + + + HN F+ L G+ I + W CT ++ Sbjct: 239 RSMLRDFFIKYLNRQMYHNIAFDVYALIYQLFMTDLLDTEGLLHGMSIMLRNWDCTKLIT 298 Query: 101 RTN-----GLPSSLKNACLAL--NFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRA 150 G SLK+ N+++ L+ + + Sbjct: 299 YLATNSCAGNKLSLKDQAQEYAGNYAQEEINDITRIPLAELLEYNLVDGLCTWYVYEKHW 358 Query: 151 NHVQAWQLFGEY-CKRDVEATRELFKRLIPLSDGERDLW----LLDQTINDRGYRI-DLD 204 + + Q Y + +L + + + L Q N+ I D Sbjct: 359 DTLVNDQQLDVYTNIFKPACEDIIQMQLTGMPINMKTVLGVEEALTQDYNNALKTIADSK 418 Query: 205 LVLKLQELIAQERKKLDEDIVKLTD------GIIRSSRQTYALRMYLFLITGIDL----- 253 ++ L+ +E + I+K + L+ LF + + Sbjct: 419 VIKDFTRLLNEEWVEKQNQILKKKRVTLADAKEQFNPNSGVQLQKLLFEFLELPVLGLTA 478 Query: 254 ---VDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSEAV-SSDGRLRG 307 G LKS+ +H+ T + + L +++ A + L A DG Sbjct: 479 SKLPATGSGILKSLKNHTQDTSILEILDALIDYKAVDKILTAFIPALKNARQGPDGWHYL 538 Query: 308 TLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G + +GR S QNLP R + ++ Sbjct: 539 FGNLNLGGTVSGRLSSSEPNLQNLPSGSR------------------------YAKIIKK 574 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI----- 421 C A G D A +E R+ A + K+K + +G D + F + Sbjct: 575 CFEAPPGWIFCGLDFASLEDRISALTTKDPNKLKVYTDGYDGHSLRAYAYFGEMMPDIED 634 Query: 422 --------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + K R K AL YQG + + Sbjct: 635 TVESVNSIQEKYKAYRQDSKAPTFALTYQGTYITL-----MKNCGFPEQKARMVEERYHT 689 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 ++ ++ DQ + G + Q+ + ++ Sbjct: 690 LYKVSDDWVQAKLDQAAKDGYVTVAFGLRVRT---------PLLQQVIRGTSKTPYEAEA 740 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 EG + + L R + V S RL M Y Sbjct: 741 EGRTAGNALGQSWCLLNNRAGSEFMRKVRNSKHRLDIRPSTHIHDAQYFLIRDDMDVVIY 800 Query: 594 GGKLTENIVQ 603 VQ Sbjct: 801 TNTHLVKAVQ 810 >gi|316995410|gb|ADU79191.1| DNA polymerase [Enterobacter phage EcP1] Length = 865 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 84/585 (14%), Positives = 165/585 (28%), Gaps = 136/585 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLLQYL 61 L DIE S + +A + ++AW+ + D + L Sbjct: 190 LSADIEAWSLK----------FYEARLGTISFAWNQHEGIAFAVDFERNYEDALAIRLLL 239 Query: 62 -----RDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVLARTN 103 + M HN ++ + L G+D+ +K W T ++ Sbjct: 240 KGFFTEYKGKMLW-HNGSYDLTVIIYELWMNGLLDQKGLLTGLDVMTKNWHDTKIITYLA 298 Query: 104 -----GLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 G LK N++ K +LI + + CT + + W Sbjct: 299 TNSCAGNHLGLKAQSHEYAGNYALDDIKDI---SLIPKKDLVRYNLIDSLCTWYVYGKHW 355 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q + + REL+ L + G +D++ VLK+++++ +E Sbjct: 356 QTMND------DNQRELYDDLF------MPSLKNIIQMQLTGIPLDMEEVLKVEKILIKE 403 Query: 217 RKKLDEDIVKL------------------------------TDGIIRSSRQTYALRMYLF 246 + ++++K + L+ L+ Sbjct: 404 KVTFYQEMLKFSVITDLVHSVRKRKCEKKNASLKTKQVTVEDFDDQFNPDSPLQLQELLY 463 Query: 247 LITGIDL--------VDMSEGTLKSILSHSNITQLAKDLILNRLASS--GSAILKLNTLS 296 I G+ + T++ + + A+ L L S + Sbjct: 464 DIMGLPVIDLTDTKAPATGAETMEKLKFKVKTPEHAELLDLLIKFSKVNKIITSFIPAFK 523 Query: 297 EA-VSSDGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 A + DG F G + +GR S Q +P Sbjct: 524 AAPKAEDGWHYLFGFFNLGGTVSGRLSSSNPNLQQIP----------------------- 560 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S ++ C A G V D A +E R+ A + K+K + +G D + Sbjct: 561 SSKSPYSKVIKKCFRAPKGFLFVGLDFASLEDRISAVTTKDSNKLKVYTDGYDGHCLRAY 620 Query: 415 KAFNTPI-------------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F + + K+ R K L Y+G M + Sbjct: 621 AYFKDEMPDIINTVESINSIEGKYKDIRQKSKTPTFLLTYRGTY-----MGLMQKCGFDE 675 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + E +++++ ++ + G Sbjct: 676 PTAKQIESRYHELYKESDDWVNARLEEATKVGYVTAAFGLRVRTP 720 >gi|294083961|ref|YP_003550718.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663533|gb|ADE38634.1| DNA polymerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 587 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 77/549 (14%), Positives = 147/549 (26%), Gaps = 103/549 (18%) Query: 1 MSKLFIDIETRS-PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 M ++ D+E+ + L K I A D+P + W + + + + + Sbjct: 1 MRYVW-DLESNGFLEDLTK-----------IHCIAMMNADDPKETW-VFGPNDIKAGMKK 47 Query: 60 YLRDETVMCVAHNSL-FERILFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + + HN L + K + + T VL+R + L+ Sbjct: 48 LAEATEI--IGHNILGHDVPALMKVYPNFSLDGVKLTDTLVLSRLITADLRNDDYERILS 105 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + K +L A + + + + + Q +YC++DV ++K L Sbjct: 106 IDDFPRKYYGSHSLKAWGYRLGEYKGDFG-EQTDWSEWTQGMQDYCEQDVVVNYAVWKHL 164 Query: 178 IPL------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226 P D E + + I G+ +++ L +A E+ +L+ ++ + Sbjct: 165 DPDSYSQRAIDFEHKMAEICHRIGKAGWHFNVEKAGILYGQLAGEKAQLESELKELFPPW 224 Query: 227 ------------------------LTDGIIRSSRQTYALRMYLFLITGIDL----VDMSE 258 I + ++ L Sbjct: 225 TKEEIFIPKRNNKTLGYVADEPFIKCKEITFNPNSRKHIQRCLMDKYDWKPRQFTYSGDA 284 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGA 314 + +LS + K L R I L N V L + GA Sbjct: 285 KIDEGVLSRLPYPEAKK---LARSFLLQKRIGMLAEGNNAWLRLV-EGNTLCHVINPNGA 340 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 TGR + F +P R G Sbjct: 341 -VTGRATHFNFNTAQVP-----------------------SVRAPYGKECRELFGVPEGY 376 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV +DL+G+E R LA + + K + A + + R K Sbjct: 377 SLVGSDLSGVELRCLANVLQDQGK--------YANIILNADIHLANMHSMGLTSRDQAKT 428 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + Y GG + + + + ++ + Sbjct: 429 AIYCMIYGGGDARLGEV-----VGKGAAEGRTLRNNFMKANPAFADLVRQLKQVVTKRGH 483 Query: 495 KDKLIGTAC 503 L G Sbjct: 484 LVGLDGRKL 492 >gi|320156437|ref|YP_004188816.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O] gi|319931749|gb|ADV86613.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O] Length = 684 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 103/774 (13%), Positives = 173/774 (22%), Gaps = 199/774 (25%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEP----VKLWDRTEQSAMPSDL 57 +L DIET + I A D + + L Sbjct: 5 RLCYDIETDGL----------IEDVTRIHCIAIINVDTHEEALYADYLVMMTKGTIKDGL 54 Query: 58 LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-------------- 102 + +R + + HN ++ + KK G+++P + T V AR Sbjct: 55 DRLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIKDIDQRNSG 112 Query: 103 ------NGLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 SL+ + L D Sbjct: 113 KYTLGKLFGSHSLEAWGIRLGGNLKME-YAPVIDPDQPVYDPTVKPKDAKKDPRWK-GSI 170 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDL 205 + G+YC +DV +LF RL E D + G++ D + Sbjct: 171 FTPMMGDYCMQDVRVNVDLFHRLERKAAELNYARSLKLEHDAAWVLAQQERNGFKFDEEK 230 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGII--------------------------------- 232 +KL +A R+ L ++++ G Sbjct: 231 AIKLLGRLAGRREFLYGELIRTFGGWWVSEGVVVPERTVNYKNPLTASRTQGAPFTKVKW 290 Query: 233 --RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L ++IL AK + L Sbjct: 291 VDFNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFP-EAKLMAEWFLVQKRL 349 Query: 288 --AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 V DG +RG++ GA TGR + +P Sbjct: 350 GQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVP-------------- 394 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV---LAWIAGEDWKIKAF 402 R G L+ +D +G+E R + I Sbjct: 395 ---------SCGAEYGAECRELFTVPEGWWLLGSDASGLELRCLANFMARYDDGKYIDVV 445 Query: 403 AN---GEDIYVTTYAKAFNTPIDKVSK---EQRAIGKVMELALGYQGGAKVFKTMASHCG 456 N A T D + E R K A Y GA+ Sbjct: 446 LNGDIHWANAQAAGFIAKGTIRDPHNPIHEEARRKAKTFIYAFLYGCGAE------LTGQ 499 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + + E E V+K + Sbjct: 500 QVGWTEEEYLNWKAKGAHKPIINRFKRQGKPWTREKV----CNILKGEEVQKNFMKGLPA 555 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + L + E I RR+ Sbjct: 556 LKNLIEICKEQHKTNKY--------------------------IEGIDGRRIYTRSEHAS 589 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD-------I- 624 ++Q + + K GY + Sbjct: 590 ---------------------LNTLLQGAGALVCKAWIVEIEKLAIQAGYKHGADGDFMY 628 Query: 625 VLTVHDEIVSETPDTP-YFSVGTLCSL-MTKNPSWAKGLP--LKAEGYEAKRYR 674 VHDE+ +G LC + M+ L A+ K ++ Sbjct: 629 CAWVHDEVQIACRTKEIAEHIGQLCQVAMSN-VEKEFNFICRLDADFQIGKSWK 681 >gi|32442297|gb|AAP82219.1| DNA polymerase [Podovirus GOM] Length = 397 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 109/411 (26%), Gaps = 118/411 (28%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T V++ + SL+ L FS Sbjct: 1 DTLVMSSLSNPNREDGHSLRAWGERLGFS--------------------------KGDHT 34 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS--------DGERDLWLLDQTINDRGYRID 202 + + +YC RDVE T +L++ L+ + E ++ + G+ +D Sbjct: 35 DWTRLTPDMEKYCVRDVEVTEKLYQHLLKELDGFDVSSIELEHEVQRITARQVRLGWLLD 94 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTD--------------------------------- 229 L +L L+ +++ +L++ + Sbjct: 95 LKYAHQLLALLKEKKYELEDKVQDTFRPLPTFIREVTPRCKKDHTLSAVGLKFLGEQWSD 154 Query: 230 ---------GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDL 277 + + YL +G +S+LS A L Sbjct: 155 VCGPFSRVDCPEFNLGSRQQIGRYLQHFGWKPTKFTEKGHAIVDESVLSKITDIPEA-QL 213 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 I L + ++ + EA DGR+ G + GA TGR + +P Sbjct: 214 IAEYLMVQKR-VAQIQSWIEAADDDGRVHGRVNTNGA-VTGRMTHSEPNLAQVP------ 265 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC G LV D +G+E R+LA G+ Sbjct: 266 -----------------AVRAPYGKECRSCWTVPEGYSLVGFDASGLELRMLAHYMGD-- 306 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 E + E R K A Y G Sbjct: 307 -------REYTNEILHGDIHTANQHLAGLESRDQAKTFIYAFLYGAGDAKL 350 >gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi] Length = 287 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 104/400 (26%), Gaps = 123/400 (30%) Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 L ++ ++ T + +GR+S Q +PRQ Sbjct: 1 MYKLYSAFYLKLPLHINKQTNKIHTTFNQLK-TFSGRFSSEKPNLQQIPRQ--------- 50 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I S ++AD IE ++ A I ++ +KA+ Sbjct: 51 -------------------QNIREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAY 91 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 N D++ T + ID+++KE R + K + L Sbjct: 92 NNNIDLHTLTASIITKKGIDEINKEDRHVAKAINFGLL---------------------- 129 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 ++ ++ K+ C ++ ++G+ + Sbjct: 130 --------YGMNYVNLRTYANTY--------YNVKMNLDQCLYFYNSFFEHYKGLSRWH- 172 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 S + R P Sbjct: 173 ---NSVKQTRALEYSTLSNRKVVFPYFSFT------------------------------ 199 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPD 638 K VQ DIL + KN I+L VHDEI+ E Sbjct: 200 -------------KALNYPVQGTCADILKLALVELYKNLRHINGKIILCVHDEIIIEVDK 246 Query: 639 TPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY--EAKRYRK 675 L M + S+ +K E A+ + K Sbjct: 247 KHQEEALKILVESMESSASFFLK-KVKCEVSAKIAQNWGK 285 >gi|9964623|ref|NP_064753.1| RP DNA pol [Roseobacter phage SIO1] gi|9944314|gb|AAG02598.1|AF189021_17 RP DNA pol [Roseobacter phage SIO1] Length = 580 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 74/564 (13%), Positives = 137/564 (24%), Gaps = 140/564 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVI--TLCAYAWDDEPVKLW--DRTEQSAMPSDLL 58 ++ DIET A A + L A + D + + Sbjct: 2 EVVFDIETD-------------ALDATVIHVLVAKRV-GQKGFYVVRDAETFKRLAKQV- 46 Query: 59 QYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNAC 113 + + HN F+ KK G IP K T V++R SL Sbjct: 47 -------TLWIGHNVIGFDIPQIKKLWGYGIPLKDVADTLVMSRLLDPTRKGGHSLDALS 99 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 G I + YCK+DV ++ Sbjct: 100 --------------GNEKIDFHDFSTYT---------------PEMLAYCKQDVAINEKV 130 Query: 174 FKRLIPLS--------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + +L E + + G+ +D D+ ++ +E +++ +I Sbjct: 131 YLQLKEELSNFGKASIQLEHQMQAIVCEQEKNGFMLDTDIAEEIYTTCLRETNRIEAEIK 190 Query: 226 KLTD--------------------------------------GIIRSSRQTYALRMYLFL 247 + + + L Sbjct: 191 EFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGDYTKIAWEEFNLGSPAQVNKRL-D 249 Query: 248 ITGIDLVDMSEGTL------KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 G ++ +++ + + A + + Sbjct: 250 RLGWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGLKAWKVLETRW-KLAQEWLQKSQE 308 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ G + GA T R + N+P ++ + ++ + Sbjct: 309 TGRVHGRVILTGA-VTHRAAHQGPNMANIPSVPHGKDGILWKMEGM------------YG 355 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R GK LV D AGI+ RVLA + + + FN Sbjct: 356 AECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP-------IYTEQVIDGDIHTFNKEA 408 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + R K A G + ++ L N + +E + Sbjct: 409 LGRYCKDRPTAKTFIYAFLLGAGTGMIASI-----LGCNNRQANEAMANFYEAIPSLKK- 462 Query: 482 HLWMQDQYPEFAVKDKLIGTACEL 505 Q L G + Sbjct: 463 LKSQASQAASMGWMKGLDGRVLRI 486 >gi|163937889|ref|YP_001642775.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4] gi|163865744|gb|ABY46800.1| DNA-directed DNA polymerase [Bacillus weihenstephanensis KBAB4] Length = 359 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 102/348 (29%), Gaps = 53/348 (15%) Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA----GEDWKIKAF 402 VR G + ADL+ IE R++A I G++ F Sbjct: 29 KGSNLQNIPARSKEGARVRGAFKPQEGWFYLAADLSQIEPRIMAHIMWTIYGDNSLRSIF 88 Query: 403 ANGEDIYVTTYAKAFNTPIDKV---------SKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G D+Y T FN + + RA+ K LA Y + Sbjct: 89 TAGRDLYTTMAMMVFNLDEKYCVDKAYDPTGTFKPRAMMKTGVLAKSYDQQVG---NFCN 145 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ ++ N+ + + + + + L G + Sbjct: 146 TMGVSIEVG--NMFYEKFDTAFPSFINMVRDKRKFAYDKGYSETLYGRK---------RR 194 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + K + ++ + R V R L + L+ Sbjct: 195 FPQLAEWSKIVKRNERKLMDLYIERARIRKKVV-------KSRYDFERLDTLEELIKPMA 247 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNGYDIVLTVH 629 + + R +++Q DIL M K G+ + ++H Sbjct: 248 E-----MRNMVGYWERAS------FNSVIQGTGADILKLNMIRLYRECQKRGWYLNASIH 296 Query: 630 DEIVSETPDTP--YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DEI E P + + +MTK+ LPLK++ + K Sbjct: 297 DEIKVEVPRKDLTLENCDLITDIMTKSVE--LSLPLKSDTVIETVWGK 342 >gi|109521899|ref|YP_655336.1| gp59 [Mycobacterium phage Pipefish] gi|88910630|gb|ABD58556.1| gp59 [Mycobacterium phage Pipefish] Length = 605 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 103/715 (14%), Positives = 191/715 (26%), Gaps = 188/715 (26%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTE-QSAMPSDLLQ 59 + DIET G+ I +AW DD + + + Sbjct: 36 TIATDIET--------PGLDRA---FEINCVTFAWRWDDGSIHSVLLDPVGNTLHRQACI 84 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGI-----DIPSKRWICTSVLARTNGL----PSSLK 110 L + + HN+ F+ + G+ +I + + T +LAR SL Sbjct: 85 DLYERAETIILHNAPFDIPAL-RHAGLFGTSPNIAINKVVDTLLLARFALPDVTVSKSLT 143 Query: 111 NAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L S+ M+ G I +G P A L E Sbjct: 144 ALSIRYLGLSDFKDGMKVAFAAAGYKTIQAGYEGMSIESPIYRVGAMADTIATLKLEPLL 203 Query: 165 RDVEATRELFKRLIPL---SDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELI 213 R + L +D E + L DQ R G +D + + + QE Sbjct: 204 RAMAINWTLDHPFADHGATTDAEAEKILGDQETVHRVMLRRTGKGLAVDHEYLTRYQEEK 263 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHS 268 ER + + + G+ + + + YL I + K +L Sbjct: 264 DAERIQHEALLAAH--GLEGGAGKGKKIVEYLESIGQLPANWPRTPTGGLKATKDLLDGF 321 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + L + + K+ S GR + GAS TGR + + + Q Sbjct: 322 DHPLTTAQRKLAEIDKVLGYLTKVE---RQASVTGRCHPQVGVLGASATGRMAYSMPELQ 378 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 P+ R II +G+ L D + IE Sbjct: 379 QFPKDARP-------------------------------IITDDGQGLTSIDWSQIEPVT 407 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + + + ++ G ++ Sbjct: 408 ---------------------------------------MANMAGDVGFLIPFEAGEDLY 428 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + CGL + + +++ + A+K + + +++ Sbjct: 429 EPIQRSCGLPMTKEGRDI---------AKVVLLATMYGMGVNGLALKINHTVESAQQIRR 479 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 A + + I+ + R L Sbjct: 480 QMLAAMPESAKWMARVQGIADQ--------------------------YGRIITAAGRIL 513 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 D VQ + D+L + + + G L V Sbjct: 514 PVDDGGVFR-------------------AVNYTVQGSALDVLHDTIVRMERAGLADELHV 554 Query: 629 --HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLP-LKAEGYEAKR-YRK 675 HDE++ TP + +M P WA +P L+ + + + ++K Sbjct: 555 AMHDELIVSTP-----VADEVQQIMLTPPDFLIRWAGRVPVLRTDAADMEHAWKK 604 >gi|262155784|ref|ZP_06028907.1| DNA polymerase [Vibrio cholerae INDRE 91/1] gi|262030375|gb|EEY49016.1| DNA polymerase [Vibrio cholerae INDRE 91/1] Length = 684 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 97/766 (12%), Positives = 171/766 (22%), Gaps = 183/766 (23%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEP----VKLWDRTEQSAMPSDL 57 +L DIET + I A D + + L Sbjct: 5 RLCYDIETDGL----------IEDVTRIHCIAIINVDTHEEALYADYLVMMTKGTIKDGL 54 Query: 58 LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-------------- 102 + +R + + HN ++ + KK G+++P + T V AR Sbjct: 55 DRLMR--AQLTLGHNIIKYDHPVIKKVTGVELPKDKSFDTLVAARLVFSNIQDIDQRNSG 112 Query: 103 ------NGLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 SL+ + L D Sbjct: 113 KYTLGKLFGSHSLEAWGVRLGGNLKME-YAPVIDPDQPVYDPTVKPKDAKKDPRWK-GSI 170 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDL 205 + G+YC +DV +LF RL E D + G++ D + Sbjct: 171 FTPMMGDYCMQDVRVNVDLFHRLERKVAELNYARSLKLEHDAAWVLAQQERNGFKFDEEK 230 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGII--------------------------------- 232 +KL +A R+ L ++++ G Sbjct: 231 AIKLLGRLAGRREFLYNELIRTFGGWWVSDGVVVPERTVNYKNPLTASRTQGAPFTKVKW 290 Query: 233 --RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L ++IL AK + L Sbjct: 291 VDFNPSSRRHIIKVLTDRGWTPEEFTPSGEAKVDETILKDLKFP-EAKLMAEWFLVQKRL 349 Query: 288 --AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 V DG +RG++ GA TGR + +P Sbjct: 350 GQLADGNQAWLNTVHPDGFIRGSVNPNGA-VTGRATHSFPNVAQVP-------------- 394 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 R G L+ +D +G+E R L A Sbjct: 395 ---------SCGAEYGAECRELFTVPEGWWLLGSDASGLELRCL-----------ANFMA 434 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 N I + + A F + + Sbjct: 435 RYDGGKYIDVVLNGDIHWANAQ-----------------AAGFIAKGTIRDPHNPIHEEA 477 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + + + K + Sbjct: 478 -------RRKAKTFIYAFLYGCGAELTGQQVGWTEEEY---------LNWKAKGAHKPII 521 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 F + + + K LP+ + L+ + + Sbjct: 522 NRFKRQGKPWTREKVCNILKGEEVQKNFMKG-----LPALKNLIEICKEQHKTSKYIEGI 576 Query: 586 QLMRERTYGGKL-TENIVQAISRDILCEGMKNATKN----GYD-------I-VLTVHDEI 632 R T ++Q I + K GY + VHDE+ Sbjct: 577 DGRRIYTRSEHASLNTLLQGAGALICKAWIVEIEKLAIQSGYRHGADGDFMYCAWVHDEV 636 Query: 633 VSETPDTP-YFSVGTLCSL-MTKNPSWAKGLP--LKAEGYEAKRYR 674 +G LC + M+ L A+ K ++ Sbjct: 637 QIACRTKEIAEHIGLLCQVAMSH-VEKEFNFICRLDADFQIGKSWK 681 >gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] Length = 96 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ YAE I L Y+ D V++ D + +P +L Sbjct: 1 MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL---GIDIPSK 91 L DETV A N+ FER+ + L GI++ Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDKGINVNPG 96 >gi|167946072|ref|ZP_02533146.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 45/185 (24%) Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + A++ GV + E Sbjct: 1 MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGY---------------------- 38 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + RRL D+K S R +Q + DI+ M Sbjct: 39 ----VETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY 668 + +++ VHDE+V E ++ + L M A +PL E Sbjct: 85 AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142 Query: 669 EAKRY 673 + Sbjct: 143 IGDNW 147 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 8/93 (8%), Positives = 23/93 (24%), Gaps = 9/93 (9%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + +++ F + ++ ++Q E + L G L Sbjct: 1 MGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYL---------PD 51 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + +A + L Sbjct: 52 IKARGPRRSAAERTAINAPMQGTAADIIKRAML 84 >gi|110589136|gb|ABG77077.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 151 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 45/185 (24%) Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + + + + A++ GV + E Sbjct: 1 LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGY---------------------- 38 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + RRL D+K S R +Q + DI+ M Sbjct: 39 ----VETLFGRRLYLPDIK----ARGPRRSAAERTAINAP------MQGTAADIIKRAML 84 Query: 616 NA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGY 668 + +++ VHDE+V E ++ + L M A +PL E Sbjct: 85 AVDGWIEADRPPLRLLMQVHDELVLEVQESFLETACQHLRDCMESAAELA--VPLLVEVG 142 Query: 669 EAKRY 673 + Sbjct: 143 IGDNW 147 Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 9/93 (9%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L +++ F + ++ ++Q E + L G L Sbjct: 1 LGIERSEAQEYVDLYFARYPGVAAYMERTREQAREQGYVETLFGRRLYL---------PD 51 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + + +A + L Sbjct: 52 IKARGPRRSAAERTAINAPMQGTAADIIKRAML 84 >gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 288 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 77/279 (27%), Gaps = 85/279 (30%) Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ I AF+ G+DI+++T A+ F +D+V+ EQR K + Sbjct: 1 IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINF------ 54 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G+ + + + Sbjct: 55 --------GLIYGMS------------------------------AFGLSRQLGISRPDA 76 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + ++ V Q D+ + Sbjct: 77 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGY--------------------------VETL 110 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--- 620 RRL D+ + R +Q + DI+ M + Sbjct: 111 FGRRLYLPDINSSNAMRR---KGAERVAINAP------MQGTAADIIKRAMIKIDEVIRH 161 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPS 656 ++++ VHDE+V E + M Sbjct: 162 DPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAAE 200 >gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] Length = 214 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 44/224 (19%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + S + T +A + + A + + + ++ Sbjct: 24 MKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQ 83 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + K + + RR + D+ Sbjct: 84 IKDYMKAAVKLAREKGYAETIMH--------------------------RRRLLPDIHNK 117 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHD 630 + + R + +Q + DI+ M K ++L +HD Sbjct: 118 NFNIRSFA---ERTAI------NSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHD 168 Query: 631 EIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 E++ + P + TL +M + +PL A+ + Sbjct: 169 ELLFDVPSEELDLIKTLVLKIMQQAAQ--LDVPLIADANWGHNW 210 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 15/138 (10%) Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++AF G DI+ T K F D+V+ R K + + Y Sbjct: 6 KIMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYG-----ISDYGLA 60 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + + + FE + Q + + E + ++ R Sbjct: 61 KNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHR---------RRLL 111 Query: 515 QGVLQLWKDLTEGFACVV 532 + ++ Sbjct: 112 PDIHNKNFNIRSFAERTA 129 >gi|66392089|ref|YP_239314.1| possible DNA polymerase subunit [Xanthomonas phage Xp15] gi|62529199|gb|AAX84882.1| possible DNA polymerase subunit [Xanthomonas phage Xp15] Length = 640 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 83/611 (13%), Positives = 180/611 (29%), Gaps = 69/611 (11%) Query: 1 MSKLFIDIETRSPQPLPKV--GVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAM-P 54 M +DIET + P K+ + + ++ IT A V + + Sbjct: 1 MKINSLDIETEAVDPAEKLYAALQPWRLRQGRSRITSIAVCRPGFTVDQIVNRGDNTLWL 60 Query: 55 SDLLQYLRD-ETVMCVAHNSLFERILF------KKTLGID--IPSKRWICTSVLARTNGL 105 +++ L + AHN+LF+ ++ I + +W T +L + Sbjct: 61 REMIDLLDSVGNDVVYAHNALFDIAFMIAQLQPRRMGAIPDVLKRVKWRDTGLLTKWLIN 120 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + + + + + + F K + + Sbjct: 121 GQQPETMRFSYSLANLVATFLKDDEMTPFFVKMKSQGVSPGDNPEYCE-------KRGEL 173 Query: 166 DVEATRELFKRLIPLSDGERD--------LWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 D T +L +L E+ L G RID + V + + ++ + Sbjct: 174 DAIMTLKLALKLQAHMSKEQRTGFLTEQDCLLPVANSWIMGIRIDREQVRRNDKFFSESK 233 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-----------LKSILS 266 + + + T L LF + ++ + L+ L+ Sbjct: 234 TAIAKKL----GLDEGIFTSTKRLPDLLFKEWLLPVISKTPSGNPSCNADTLKLLQYQLN 289 Query: 267 HSNITQLAKDL--ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGC 323 + T++A L IL S + ++ EA+ G + TGR++ Sbjct: 290 EAGNTEMADKLGLILEAKQYSTLHSKYVKSMIEALEHTGDGYIYASPRIFGTYTGRFTYS 349 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 + + + VR +IA G ++ AD +G Sbjct: 350 S-------TTNGKDYEDDNAKTKKFKSAIAVHQIPRRDKMVRKSMIAPEGYEIYEADASG 402 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------------VSKEQRA 430 E+R++A + + I+ F+ + + T A EQR Sbjct: 403 QESRLMALRSKDPVMIEIFSKDMNFHSMTGASIIGEDYSDFQVKYKAEGDEGGYYTEQRQ 462 Query: 431 IGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 +GK+ L+ Y+ G K A L + + ++ + + + Sbjct: 463 LGKLTNLSCNYRIGGKALSQKAFLDYDTFLTVQTGLFLVQTFNRTYKGVPQYWEDVVWES 522 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + + G +L + + A + + + +V L Sbjct: 523 RKQGYTETFGGRRYKLTDWHSHKWITESSAINVPIQGAGADMKEIAIKETFEKVPEALFL 582 Query: 550 VMRRHKRDVHI 560 + ++ Sbjct: 583 LDLHDANFFYV 593 >gi|325842751|ref|ZP_08167786.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489551|gb|EGC91916.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 330 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 68/449 (15%), Positives = 119/449 (26%), Gaps = 126/449 (28%) Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + L+ L GI + + L + D I+ + Sbjct: 3 CDNLNSSKQLKQSLQE-MGIPVTS----VQEGKLKLFSSKYSIVDEIVRYKKYNKLVTTY 57 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L +S DGRLRG G ++T R S Q++P+ Sbjct: 58 GDKLKNQLSKDGRLRGHWNLIG-TKTSRMSCQKPNFQSIPK------------------- 97 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 ++ A ++ D + IE R+LA I I AF G D++V Sbjct: 98 -----------EMKKYFQAEEENVFIIMDYSTIELRILAEITNCQKLIDAFNAGADLHVE 146 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 T + +S +R +GKV+ L Y K Sbjct: 147 TAKAI--LNQESISDSERKLGKVVNFGLIYGLTPFGLK---------------------- 182 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 E + E + + V + + Sbjct: 183 -EKINAIPGF---------------NISEYKAEEFIANYFKMYPEVAKYQQQQQ------ 220 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 + + R K Sbjct: 221 -YSDIITTLGGSYWDNTNGLDRLKPRQRY------------------------------- 248 Query: 592 TYGGKLTENIVQAISRDILCEGMK---NATKNGYDIVLTVHDEIVSETPDTPYFSVGT-L 647 VQA + L E + ++ + +V +HDEI+ E P+T + L Sbjct: 249 -------NYAVQASCAEGLKESLALFCKLKQDKWKLVSAIHDEIIIEVPETEALTAKECL 301 Query: 648 CSLMTKNP-SWAKGLPLKAEGYEAKRYRK 675 M K +P++ +K ++K Sbjct: 302 KQAMIDGMGKLVKKIPIEVSVNISKTWKK 330 >gi|60117346|gb|AAX14438.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis] Length = 193 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 39/222 (17%) Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G +++ + +L + Q L+++I L G + L LF Sbjct: 1 MKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFN 59 Query: 248 ITGI---------DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 G+ + L+++ ILN S + L + Sbjct: 60 KMGLNKKKKSKKSGSYSTNYEVLEALEEE---GVEIASKILNWRHLSKLKGTYTDALIKQ 116 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V DGR+ + + GR S QN+P Sbjct: 117 VDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIP------------------------IR 151 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + +R IA G K++ AD + IE R+LA +A Sbjct: 152 SEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFK 193 >gi|291280806|ref|YP_003497640.1| hypothetical protein DEFDS_P264 [Deferribacter desulfuricans SSM1] gi|290755508|dbj|BAI81884.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1576 Score = 120 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 75/684 (10%), Positives = 161/684 (23%), Gaps = 190/684 (27%) Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 E + I + + T + F + + + + L+ Sbjct: 862 DEFDYSYINFDEQSFYAAGDTYATYEAFKLDYMNFLKRDSKSILKEYPIPLVLLN----- 916 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT------------DGII 232 D+ L I +G +I+ D ++ + ++L ++I Sbjct: 917 -DILLPISVIQSQGIKIEPDDYEFMKINFKRSLEELLKNIYNHPDLKPYIEEFEAKYKEK 975 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGT------LKSILSHSNITQLAKDLI-------- 278 + + L + + + +S + + + I Sbjct: 976 FNIQSAEHLTHMFYDYLQVPDKYKTFTDKGNIQMNESAIKKIKGIDIEDESIQDKKKVEI 1035 Query: 279 --------LNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L S + + + + F + TGR S QN Sbjct: 1036 AKYLAEKTLEYRTFSKLYSAYIQSYNKNDLIDTNYIVHPNYFTTGTVTGRMSSSEPNFQN 1095 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P+ + +E + I + G L+ AD + +E RVL Sbjct: 1096 IPKGDLPKEFQVKNIFVSRYLNSNKYFEDNDYKK------PITG-ILLQADYSQMELRVL 1148 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR-------------------- 429 A ++ ++ AF +GEDI++ T ++ Sbjct: 1149 AMVSQDENLKNAFISGEDIHLATAKSITGMDYLSKDVDENTEITPEVKNLITKYKQYWGK 1208 Query: 430 ----------------------AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 K + + Y A +++ Sbjct: 1209 EAENLTDKEILSKIAHDTEVIRKKAKTVNFGIVYGMTAA-----GLAERINVSLKEAEKF 1263 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 +++ + Q + E + + L+ D+ + Sbjct: 1264 IEQYLNALPGVQNYIITKQTKAKEKGYVETIWNRKRNLL---------NAKVYLHDIEQI 1314 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 + P +L Y+++ + ++ Sbjct: 1315 IK----------------------HYKDKLYSKNTPEEDKLFYNNIIYGLKQMYYVGTKS 1352 Query: 588 MRERTYGGKLTENIVQAISRD-------ILCEGMKNATKNG-------------YDIVL- 626 +R+ +Q + D L + VL Sbjct: 1353 LRQSINAP------IQGGASDFTFVSLICLNHAFLTLKELNIPVYNKETNQIEYIRPVLI 1406 Query: 627 -TVHDEIVSETPDTP----YFSVGTLCS-LMTKNP------------SWAKG-------- 660 TVHD IV + P V L +M A Sbjct: 1407 GTVHDSIVIDIPVHTKHYIVHKVIKLVKTIMEDPLNYFINIFLPDVYKVAPDVNLTELKK 1466 Query: 661 -----------LPLKAEGYEAKRY 673 +PLK++ R+ Sbjct: 1467 ELNSIRDLYLQVPLKSDVEVGYRW 1490 Score = 45.5 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 70/262 (26%), Gaps = 51/262 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDE----PVKLWDRTEQS------ 51 + +DIET L + IT+ + D + + + Sbjct: 481 FVALDIET---NGLKGYSTDKHKN--TITMFSITKVDPKTKQLKTYVIGYEHKDIMNQMD 535 Query: 52 ---------AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVL 99 + +L YL E ++ + HN F+ L I +I R+ T + Sbjct: 536 EKSFKLYKNNVRKLILNYLNSENIIKIFHNGTFDVSYIMNKLNISPNEIKVTRYFDTINI 595 Query: 100 ART-----NGLPSSLKNAC-------LALNFSEH-----LTKMEEGKALIARFCKGSIDS 142 L N + K+ E +LI +F K + Sbjct: 596 LYLRMEEKLKGWQKLDNLAMLRSKLRTYYFYMHDYVDTLKNKLSELNSLINKFRKYDLTE 655 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLW---LLDQTINDRGY 199 C + + Y + E L ++ D + G Sbjct: 656 SQISCFLNINKTLINYYYIY---RTKLDIENKNSLNDFLKYMITVFSANNYDDYYSLLGK 712 Query: 200 RIDLDLVLKLQELIAQERKKLD 221 +D+ L+ L KL Sbjct: 713 NLDVLNHLRESGLDEVTIAKLL 734 >gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis] Length = 276 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 83/306 (27%), Gaps = 67/306 (21%) Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 +++ + GK + + + + Sbjct: 1 SVDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSA 38 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + E +++R L + + G +++ + +L + Sbjct: 39 KTLIAIHEKLKQRLFQEKLFTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSD 92 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI---------DLVDMSEGTLK 262 Q L+++I L G + L LF G+ + L+ Sbjct: 93 KFQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLE 151 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 ++ ILN S + L + V DGR+ + + TGR S Sbjct: 152 ALEEE---GVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTA-TATGRLS 207 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IA G K++ AD Sbjct: 208 SSNPNLQNIP------------------------IRSEEGNLIRQAFIAPKGHKIISADY 243 Query: 382 AGIEAR 387 + IE + Sbjct: 244 SQIELK 249 >gi|307106559|gb|EFN54804.1| hypothetical protein CHLNCDRAFT_134785 [Chlorella variabilis] Length = 471 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 25/230 (10%), Positives = 54/230 (23%), Gaps = 41/230 (17%) Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + G ++ + + + + K+ Sbjct: 261 SGEKRRCLLEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAHGLSKDWKVSLEEA 320 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + W A + + + + Sbjct: 321 KDTVDRWYADRPEIRKWQDEQRRQAQQRGYVTTIL------------------------- 355 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RR D + A S +R +Q + DI M + Sbjct: 356 -GRRRQLPDAALSRN--RAAQSHALRAAI------NTPIQGSAADIATAAMLRINEDEAL 406 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAE 666 G+ ++L VHDE++ E P + + M + PL + Sbjct: 407 QSMGWRLLLQVHDEVILEGPRETAELARERVVACMRSPFTGLGPKPLLVD 456 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 35/391 (8%), Positives = 82/391 (20%), Gaps = 51/391 (13%) Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII-----RSSRQTYALRMY 244 L + G +D + Q+ ++++ + + + + ++ Sbjct: 45 LLTDMEAVGMAVDRSHLAAAQQQAQADQQRAQDRFRRWAARKVGDAQHMNVGSGAQVQTL 104 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 LF G + D +G L A L+ + D R Sbjct: 105 LFA--GAENRDKDKGKDPLPLERVFKIPNAMGLMGEKDKRPKK------------MWDIR 150 Query: 305 LRGTLQF-------------YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L G E Sbjct: 151 LHSVWGQGTKSPLTPEVFTPAGEDEGPAAPPAAACVPACSTPVLKGLAGKAGKARKKLAE 210 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + +R I +G + A + + + +GE Sbjct: 211 LGLEEEAEDLSVLRG--IGEDGGDATDDEAAALSLDDGELPWPVEQEEIEQESGEKRRCL 268 Query: 412 TYAKAFNTPIDKVSKE----QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + +P + K+ +R KV+ ++ Y A + Sbjct: 269 LEWEGEGSPPLPLLKDLFASERRKAKVLNFSIAYGKTAH-----GLSKDWKVSLEEAKDT 323 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + D + + Q + ++G +L A + Sbjct: 324 VDRWYADRPEIRKWQDEQRRQAQQRGYVTTILGRRRQLPDAAL--------SRNRAAQSH 375 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + ++ + Sbjct: 376 ALRAAINTPIQGSAADIATAAMLRINEDEAL 406 >gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium] Length = 557 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 45/178 (25%), Gaps = 33/178 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----TEQSAMPSDLL 58 ++ D ET YA + ++ + E A+ Sbjct: 372 EISFDTETT----------GTYAHDVELVGLSFCYKTGEGYYIPCPPSANETQALLQHFK 421 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNA-CLA 115 D + + N ++ I+ K G+ + ++ T + + Sbjct: 422 PLFDDASKKWIGQNVKYDLIVLKWY-GVLLAG-QFFDTMLAHYLIEPEGRRGMDYLSAQY 479 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + + GK + + EY D + T +L Sbjct: 480 LQYEPVHIEELIGKKGKNQL--------------TMKDVELEKIKEYAAEDADITLQL 523 >gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 86/298 (28%), Gaps = 88/298 (29%) Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E R++A ++G++ I+AF +G D + + + P+++++ +QR+ K M L Y Sbjct: 1 MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY-- 58 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 T A + K+ Sbjct: 59 ---GLSTYGL---------------------------------------AQQLKISPKEA 76 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 E ++ + A V + + L Sbjct: 77 ESLRNQYFATFGKVHEYLESLVSTAREKGYTETIY------------------------- 111 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RR + +K + A + +Q + DI+ M A+ Sbjct: 112 -GRRRYFPGLKSPNRAVRDAAERA---------ALNAPIQGSAADIMKIAMIRASDSLRD 161 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYR 674 I+L +HDE+V E L M + A +PL A ++ Sbjct: 162 ACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHAVTMA--VPLDASTGIGSDWQ 217 >gi|282599434|ref|YP_003358324.1| N4 gp39-like protein [Pseudomonas phage LUZ7] gi|259048533|emb|CAZ66183.1| N4 gp39-like protein [Pseudomonas phage LUZ7] Length = 875 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 72/579 (12%), Positives = 141/579 (24%), Gaps = 111/579 (19%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEP------VKLWDRTEQSA 52 +L DIE S + +G A D + Sbjct: 189 ELTCDIEAFSLSMFDSGIATIGFAWSQHDA----VQIQVDYQEMAEPSGGLYGYCETNEP 244 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTL-------------GIDIPSKRWICTSVL 99 M L + + H + F+ + L G++I + T V+ Sbjct: 245 MRDVLRWFFEQYKGQLIYHKANFDVKVLIYQLYMAHDLDKVGMLRGLEIMCRGMQDTKVV 304 Query: 100 ART-NG----LPSSLKNACLALNFS---EHLTKMEE---GKALIARFCKGSIDSPPYDCT 148 A SLK+ K L+ ++ + Sbjct: 305 AYLALNSTSSPSYSLKDLGQEHAGDWSQGDDIKDIRKIPLDQLMEYNAVDAVTTMYVWNK 364 Query: 149 RANHVQAWQLFGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQ------------TIN 195 + A + Y +E + L+ + + L ++ + Sbjct: 365 YYPVMVAEKQDQLYHGLFMESQEMIIHTELVGMPMCPKRLAEVETELTKLRDGYFNTIMQ 424 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLD--EDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 D + +L +E + ++ L + + I + + L + G+ Sbjct: 425 DPM--VHRTTLLLREEAMVKKNATLKTIQKTIDDFSHIEFNPGSGPQKALLLHKVIGLPV 482 Query: 253 -------LVDMSEGTLKSILSHSNI---TQLAKDLILNRLASSGSAILKLNTLSEAVSS- 301 L ++ H L + +I + + Sbjct: 483 LDKTPTGQPATGGDELTKLIRHPAGASFKGLLQAMIDLDRVQKILS-AFIPAFKAGRLKA 541 Query: 302 DGRLRGTLQFY-GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DG L F G + +GR S QNLP Sbjct: 542 DGMLYLHGSFNLGGTISGRLSSSDPNMQNLPSGS------------------------AY 577 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 ++S +A+ G AD A +E R+ A + + KIK + +G D + + Sbjct: 578 GKLIKSIFMAAKGYLFGGADFAALEDRINALLTRDPNKIKVYTDGYDGHSMRTFAFWPEK 637 Query: 421 I-------------DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + R K L Y G M + + Sbjct: 638 CIGIVDTVSSINSIQHIYPGLRGEAKAPHFLLQYGGSW-----MGLVKNVGFAEDEAKRI 692 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + + + + G Sbjct: 693 EDNYHKLYSVSADWVATEIQKATKQGYVQLAFGLKLRTP 731 >gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii] gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii] Length = 1008 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 65/449 (14%), Positives = 120/449 (26%), Gaps = 107/449 (23%) Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G+ +++ + +L E + R ++ ++ +++ Sbjct: 277 VLAEMEMAGFGVEVGAMQRLHEESVRRRAQVLDENLEIMA-------------------- 316 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 ++ ++ + L GR+ TL Sbjct: 317 --PYDSTG--------------RVVHLVMEHARLDKLIQSYTGLFLQHVDRRTGRVYPTL 360 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S LP + + R ++ Sbjct: 361 NQVG-TATGRLSMSGANLMALPHDKEEFGEHLRNF--------------------RRALV 399 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G L+ AD + +E RV+A I + AF D++ T A+ F P+ V+ QR Sbjct: 400 ARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERRDVHAQTAARVFRVPLGAVTPAQR 459 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 GK + L Y GA + L + + + + + Q Sbjct: 460 QAGKQVNFGLVYGMGAAKL-----ARDIGLPDNEASDFIHTFRDVFATLYDQMDRTKAQA 514 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 L G + AW +G+ L Q + + A+ Sbjct: 515 FVSGYATSLRG-RRRGFRGAW--SGKGLAWLDWQARFEPWRRQQLAAEVLGKLKADEGLA 571 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 R RD L + Y Q + DI Sbjct: 572 GWRGMDRDDRTTLRELGNMSY--------------------------------QGSTSDI 599 Query: 610 LCEGMKNATKN----------GYDIVLTV 628 + M T ++L V Sbjct: 600 VKAAMVRCTAALGPGPGGINSRAQLLLQV 628 >gi|32442285|gb|AAP82213.1| DNA polymerase [Podovirus GOM] Length = 409 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 67/476 (14%), Positives = 115/476 (24%), Gaps = 136/476 (28%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T VL+R L+ L + + E + Sbjct: 1 DTLVLSRLFNPTREGGHGLEGWGYRLRHKKIEFEDFE----------------------S 38 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL---------IPLSDGERDLWLLDQTINDRGYRI 201 + YC++DV ++++ L E ++ + Q DRG+ + Sbjct: 39 FSPE----MMAYCRQDVSLNHKVYQHLARVEAAGFSKDAVTLEHSVYRIMQAQRDRGFLL 94 Query: 202 DLDLVLKLQELIAQERKKLDEDIVK----------------------------------- 226 D + LQ + + + ++ + K Sbjct: 95 DEKHAMSLQAELNENLSQAEKLVHKTFRPRETQMTLVPLMTKAGKVSKMAQIKGETKKVR 154 Query: 227 ------------------LTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 D + + YL + +L Sbjct: 155 LSDEEYAKASANPNEHLVRCDSEPFNLGSRKQIGEYLMEFGWKPAKFTPTGQPIVDEKVL 214 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 S A +I L I ++ + + V DGR+RG + GA TGR + Sbjct: 215 SKIKDIPEAA-VIAEYLMLQKR-IAQITSWFKEVGDDGRVRGFVNTNGA-VTGRMTHSHP 271 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 +P R C +G KLV D +G+E Sbjct: 272 NMAQVPSTG-----------------------SPYGKECRQCWTVMDGYKLVGIDASGLE 308 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA ++ Y E R K AL Y G Sbjct: 309 LRMLAHYMNDEG---------FTYELLNGDIHTANQMAAGLESRNQAKTFIYALLYGAGD 359 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + D + Q+ A + + L G Sbjct: 360 AKLGAVVGGNADDGGRLRQSFFDNLP------AFKVLKDRVARAAKRGYLKGLDGR 409 >gi|47076970|dbj|BAD18421.1| unnamed protein product [Homo sapiens] Length = 312 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 50/353 (14%), Positives = 107/353 (30%), Gaps = 76/353 (21%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +++ + + K L+ K+L+++ G LR Sbjct: 19 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLITSNNQLRE 77 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 LF + L+ R + + + K + SEAV+ G Sbjct: 78 ILFGKLKL------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 113 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + +Q P+N +E ++ Sbjct: 114 ISKHPIQITT-------------PKNFKGKEDKILTISP--------------------- 139 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPI 421 R+ ++S G + AD + IE R+L ++G+ +K F E + T ++ + P+ Sbjct: 140 -RAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPV 198 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 ++V+ R K + A+ Y G + L + S + +++ + Sbjct: 199 EQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPIQEAAQFLESFLQKYKKIKDF 253 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 Q + ++G L + + L Sbjct: 254 ARAAIAQCHQTGCVVSIMGRRRPL---------PRIHAHDQQLRAQAERQAVN 297 >gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYG KL ENIVQA SRD+L M+ G +V+ +HDE V + P S+ Sbjct: 4 KKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDR--SL 61 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T+ +MT+ P WA GL L A G+ Y+K Sbjct: 62 DTIVKIMTEVPDWADGLILNAAGFVGGFYKK 92 >gi|270585837|ref|ZP_06221408.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270318509|gb|EFA29597.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 141 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 7/143 (4%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID- 252 + G ID D + IA L++ L + T L+ LF G+ Sbjct: 1 MERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQPF-NLASTKQLQEILFDKLGLPV 59 Query: 253 ---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308 + T + +L + +++ S + L + V+S GR+ + Sbjct: 60 LQKTPKGAPSTNEEVLEELAYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTS 119 Query: 309 LQFYGASRTGRWSGCVFQPQNLP 331 + TGR S QN+P Sbjct: 120 YHQAV-TATGRLSSSDPNLQNIP 141 >gi|254502983|ref|ZP_05115134.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222439054|gb|EEE45733.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 593 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 75/524 (14%), Positives = 141/524 (26%), Gaps = 115/524 (21%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS 97 DE D+ + + + + V V HN F+ + + T Sbjct: 28 DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 85 Query: 98 VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 V AR SL + L Y + + Sbjct: 86 VAARLLNPSERANSLDDWGKRLG--------------------------EYKGEFKDFSR 119 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVL 207 + EY ++DV TR+L+ +L P + E + G+ ++ Sbjct: 120 FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKAR 179 Query: 208 KLQELIAQERKKLDEDIVKLTDG---------------------------------IIRS 234 L+ + QE ++ ++ ++ I + Sbjct: 180 GLEAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFN 239 Query: 235 SRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA-- 288 L S +S+L+ AK L + Sbjct: 240 PGSRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLKYP-EAKVLNRYLRITKLLGQV 298 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + N + V+ R+ G + GA TGR S + +++ Sbjct: 299 VDGENGWLKLVNEETSRVHGAVNTIGA-ATGRCSHFKPNMAQVDKKDLR----------- 346 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R C A G LV D G+E R+LA G+ + Sbjct: 347 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 390 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFS 463 A V +R K + AL Y G + A G++L+ Sbjct: 391 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 450 Query: 464 QNVKSTSTFEDWEQAE---SHHLWMQDQYPEFAVKDKLIGTACE 504 + + + + + + + ++D+ + L G Sbjct: 451 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRIY 494 >gi|313892512|ref|ZP_07826101.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119091|gb|EFR42294.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 626 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 81/569 (14%), Positives = 146/569 (25%), Gaps = 114/569 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSAMPSDLLQYLR 62 L DIET I + + V+ + E L+ + Sbjct: 2 LIFDIETNGLLDTTT----------QIHCMSILDTHNLEVQAYRPWEIKEGIQRLMHEIN 51 Query: 63 DETVMCVAHNS-LFERILFKKTLGIDIPSKR-----WICTSVLARTNGLPSSLKNACLAL 116 ++ HN F+ +K + ++ I T V+AR ++ Sbjct: 52 NDG-TICGHNIISFDIPAIEKLYPKEFHIQKEKHTHIIDTLVMARLLNSNIQEQDLIRYR 110 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFK 175 E + +L A + I Y + + + EY K+DV T L+K Sbjct: 111 K-KELAGNLIGSHSLKAYGHRLGILKGTYAEDNEEAWEVYNEDMLEYNKQDVRVTYALYK 169 Query: 176 RLIPLSD-------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK-- 226 E L + + G+ D+ LKL + + Q +++D I Sbjct: 170 SFQDRIKGMEQAILLEHKAQWLMTKMEENGFPFDIPDALKLVKTLRQRAEEIDTQISAVV 229 Query: 227 ------------------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMS----- 257 + + + Sbjct: 230 PKIPDKVFTPKRDNKRLGYKKGVPIQRYKPFNPNSRQQIEWIFRTHYNYTPDKADLYTEE 289 Query: 258 ------EGTLKSILSHSNITQLAKD---LILNRLASSGSAILKLN---TLSEAVSSDGRL 305 E T + I Q AK L RL + + V SDG++ Sbjct: 290 GRLKIDESTFEYIEKDEKAPQGAKKIAPLFEERLMLCKRLGQLADGKQAWLKHVKSDGKI 349 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G + G + TGR + +P + R Sbjct: 350 HGRVNPNG-TVTGRATHSNPNVAQVP-----------------------HVGTPYGEECR 385 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 G D G+E R LA + + G+ + + + Sbjct: 386 KLFNVPQGWTQAGIDACGLELRCLAHY------LSPYDKGKYAHEVVHGDIHTSNQKAAG 439 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 R + K A Y G + + + ++ F+ + + Sbjct: 440 LATRNLAKTFIYAFLYGAGDLMIGEL-----VGGKEKEGKAIKKKFFKATPSIKLLKEDI 494 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + LI T K W+ K+ Sbjct: 495 EKA---------LIKTRIYNRKIQWKRKY 514 >gi|254505350|ref|ZP_05117498.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] gi|222436194|gb|EEE42876.1| DNA polymerase I domain protein [Labrenzia alexandrii DFL-11] Length = 580 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 75/524 (14%), Positives = 141/524 (26%), Gaps = 115/524 (21%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTS 97 DE D+ + + + + V V HN F+ + + T Sbjct: 15 DEATVYADQIGFPPIKDAIKRLKEADRV--VFHNGQGFDIHAINHFYPGTLTPHQVWDTL 72 Query: 98 VLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 V AR SL + L Y + + Sbjct: 73 VAARLLNPSERANSLDDWGKRLG--------------------------EYKGEFKDFSR 106 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVL 207 + EY ++DV TR+L+ +L P + E + G+ ++ Sbjct: 107 FSKELVEYARQDVVVTRKLYHKLEPQLRNWGQSFELENLFAYIISLQVQNGFHLNTGKAR 166 Query: 208 KLQELIAQERKKLDEDIVKLTDG---------------------------------IIRS 234 L+ + QE ++ ++ ++ I + Sbjct: 167 GLEAELRQEASDIERELQEVFPPRLIADKRKGTAEVMPKANRKAIRKGQPYSRLKLEIFN 226 Query: 235 SRQTYALRMYLFLITGIDL----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA-- 288 L S +S+L+ AK L + Sbjct: 227 PGSRPQAADRLIKKYKWKPKKFTDKGSPAIDESVLAKLKYP-EAKVLNRYLRITKLLGQV 285 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + N + V+ R+ G + GA TGR S + +++ Sbjct: 286 VDGENGWLKLVNEETSRVHGAVNTIGA-ATGRCSHFKPNMAQVDKKDLR----------- 333 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R C A G LV D G+E R+LA G+ + Sbjct: 334 ----------------MRECWEARPGWDLVGVDAEGLELRMLAHYLGKFDGGALTRALLE 377 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFS 463 A V +R K + AL Y G + A G++L+ Sbjct: 378 GSKEAGTDAHTINQKAVGLHKRDNAKRLLYALMYGAGDVKLGQIIVDDAREAGINLKGNK 437 Query: 464 QNVKSTSTFEDWEQAE---SHHLWMQDQYPEFAVKDKLIGTACE 504 + + + + + + + ++D+ + L G Sbjct: 438 KALGAKARKDLAKGMKGLDKLVDKVKDKAGKKKYIQGLDGRRIY 481 >gi|109392407|ref|YP_654951.1| gp54 [Mycobacterium phage Cooper] gi|88910241|gb|ABD58171.1| gp54 [Mycobacterium phage Cooper] Length = 617 Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats. Identities = 99/699 (14%), Positives = 177/699 (25%), Gaps = 192/699 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTE-QSAMPSDLLQY 60 + DIET + I AWD D + + ++ Sbjct: 57 IAFDIETPGLDNV-----------FTINCVTAAWDWPDGGTQTILLDPARDEEHWEVAVA 105 Query: 61 LRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGL----PSSLKNAC- 113 L HN F+ G+ D +R + T ++ R P +L Sbjct: 106 LLHAARTVAFHNVPFDAPPL-YHAGLINDSTIRRIVDTLLITRFAVPDVMVPKNLTALSV 164 Query: 114 LALNFSEHL------TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L + K K A F I SP Y A + Sbjct: 165 RHLGLDDDKGGLERAFKAAGYKTQQAGFEGMDITSPVYRYGAMADTVATLRVEPLMRAKA 224 Query: 168 E-------------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 T+ + L+ + + L + G +D + + E + Sbjct: 225 LHWATDHPFATYGATTQAEAEELLATQETVHRVMLRRSAV---GLAVDRAYLDRYAEQVD 281 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSHSN--I 270 +R ++ G+ S + L YL + L++ + + Sbjct: 282 IDRNLAIAELAAH--GLEGGSGKGAKLVEYLAERGELPANWPRTPTRKLRATKADLDGLD 339 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 LA L + S GR + GAS TGR + + Q Sbjct: 340 HPLAAAQRKLAQIDKVM--GYLEKVDRQASVTGRCHPQVGVLGASATGRMAYGSPELQQF 397 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P II +G+ L D + IE +A Sbjct: 398 PADA-------------------------------RAIITDDGQGLTSIDWSQIEPVTMA 426 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +A + + F GED+Y PI + + R + KV+ L Y Sbjct: 427 LMAKDHEFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTMY--------- 468 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 GL + + A + + +++ Sbjct: 469 -----GLGI------------------------------AKLARQIGHTEESAAQIRRQM 493 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 +G + + + + + + Sbjct: 494 FEAMKGCERWMRKVQNVAETYGRVVTAGGRILPVDQG----------------------- 530 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV-- 628 Y K +Q + D+L + + G L + Sbjct: 531 ----------------------YEYKAVNYAIQGSAYDVLAHSIVEMDRRGIGDHLQLAM 568 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663 HDE+V +T + +M P WA+ +P+ Sbjct: 569 HDELVVDT-----EVAEEVQQIMLTPPEFLITWAERVPV 602 >gi|435164|emb|CAA53760.1| DNA polymerase I [Rhizobium leguminosarum] Length = 158 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 31/162 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNA 112 L L DE+V+ VA N ++ +L K+ I ++ + T +++ + Sbjct: 14 RLKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLEPAPARHGMDPL 70 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + K G + Y D + T Sbjct: 71 SEKFLGHTPIPYKDVAGSG---------------KANVTFDLVDIDRATHYAAEDADVTL 115 Query: 172 ELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLD 204 L+ L P ER L + + RG +D Sbjct: 116 RLWLVLKPGCARGLTSVYERLERPLLPVLARMEARGITVDRQ 157 >gi|194100568|ref|YP_002003893.1| gp54 [Mycobacterium phage Nigel] gi|192758284|gb|ACF05057.1| gp54 [Mycobacterium phage Nigel] Length = 618 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 104/695 (14%), Positives = 185/695 (26%), Gaps = 183/695 (26%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD---DEPVKLW--DRTEQSAMPSDLL 58 + +DIET I AW+ V+ D + A + + Sbjct: 57 VAMDIETPGLDN-----------AFTINCVTMAWEMPTTGHVRTVILDPSRNRADHAIVR 105 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTNGL----PSSLKNAC 113 + + HN+ F+ D P + + T +++R P +L Sbjct: 106 DMVEHAGRL-AFHNAPFDTPPLLHNQLFDRPDINKIVDTLLISRFAVPDVMVPKNLTALS 164 Query: 114 -LALNFSEHL------TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE--YCK 164 L + K K A F I SP Y A K Sbjct: 165 VRHLGLDDDKGGLERAFKAAGYKTQAAGFEGMDITSPVYRYGAMADTVATLRLEPLMRAK 224 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDR--------GYRIDLDLVLKLQELIAQE 216 AT F+ ++ E + L Q R G +D + + E + + Sbjct: 225 ALHWATDHPFQTYGATTEAEAEQLLWTQETVHRVMLRRSAVGLAVDRAYLDRYAEQVDVD 284 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 R ++ G+ S + L YL+ + T K + ++ L Sbjct: 285 RNLAVAELAAH--GLEGGSGKAAKLVEYLYQRGELPEPWPRTPTKKLRATKDDLEGLDHP 342 Query: 277 LILNRLASSGSAI--LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L + + L + S GR + GAS TGR + + Q P Sbjct: 343 LAAAQRKLATIEKVMGYLAKVDRQASVTGRCHPQVGVLGASATGRMAYGSPELQQFPADA 402 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 II +G+ L D + IE +A +A Sbjct: 403 -------------------------------RAIITDDGQGLTSIDWSQIEPVTMALMAK 431 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + F GED+Y PI + + R + KV+ L Y Sbjct: 432 DHDFLAPFEAGEDLYE---------PIQRSAGIDRPVAKVVLLGTMY------------- 469 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 GL + + A + + +++ Sbjct: 470 -GLGI------------------------------AKLARQIGHTEESAAQIRRQMFEAM 498 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 +G + + + + + + Sbjct: 499 KGCERWMRKVQNVAETYGRVVTAGGRILPVDPG--------------------------- 531 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEI 632 Y K +Q + D+L + + G L + HDE+ Sbjct: 532 ------------------YEYKAVNYAIQGSAYDVLANSIVEMDRRGISDHLQLAMHDEL 573 Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL 663 V +T + +M P WA+ +P+ Sbjct: 574 VVDT-----EVAEEVQQIMLTPPEFLITWAERVPV 603 >gi|114592896|ref|XP_001147297.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] Length = 311 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 108/353 (30%), Gaps = 76/353 (21%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +++ + + K L+ K+L+++ G LR Sbjct: 18 ELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLIMSNNQLRE 76 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 LF + L+ R + + + K + SEAV+ G Sbjct: 77 ILFGKLKL------------------------HLLSQRNSLPRTGLQKYPSTSEAVNIQG 112 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + +Q P+N +E ++ Sbjct: 113 ISKHPIQITT-------------PKNFKGKEDKILTISP--------------------- 138 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI--YVTTYAKAFNTPI 421 R+ ++S G + AD + IE R+LA ++G+ +K F E + T ++ + P+ Sbjct: 139 -RAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPV 197 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 ++V+ R K + A+ Y G + L + S + +++ + Sbjct: 198 EQVTHADREQTKKVVYAVVYGAGKERLAAC-----LGVPVQEAAQFLESFLQKYKKIKDF 252 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 Q + ++G L + + L Sbjct: 253 ARAAIAQCHQTGCVVSIMGRRRPL---------PRIHAHDQQLRAQAERQAVN 296 >gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 100 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 44/92 (47%), Positives = 56/92 (60%) Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 ++R +YGGKL ENIVQA++RD+ M + G+ IV+ VHDEIV + P F+ Sbjct: 8 DRLVVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFT 67 Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V C LM P WA GLPL A+GYE YRK Sbjct: 68 VADACVLMATLPDWAAGLPLDADGYECDYYRK 99 >gi|222871907|gb|EEF09038.1| predicted protein [Populus trichocarpa] Length = 161 Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 49/192 (25%), Gaps = 44/192 (22%) Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A + A + + ++ GV + + Sbjct: 3 AFGLASNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVF---------- 52 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 RRL D+ G A R +Q + D Sbjct: 53 ----------------GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAAD 87 Query: 609 ILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGL 661 ++ M + G ++ VHDE+V E P V L LM + + Sbjct: 88 LIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVAT--LNV 145 Query: 662 PLKAEGYEAKRY 673 PL AE + Sbjct: 146 PLVAEVGSGANW 157 >gi|167464943|ref|ZP_02330032.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384416|ref|ZP_08058102.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150774|gb|EFX44234.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 388 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 53/360 (14%), Positives = 107/360 (29%), Gaps = 46/360 (12%) Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA--- 393 +++T + P A VR+C I G + ADL I+ R++A I Sbjct: 12 RKLITSNEKVPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFIGADLGQIQPRIMAHIMYVK 71 Query: 394 -GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 G++ + F +G D+Y F P ++V ++ V G+ G Sbjct: 72 YGDNSMRQIFVDGVDLYTKMAMMTFGLP-EQVCLDKAWYDPVSGQG-GFGGEPPA----- 124 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + FA K + + + + Sbjct: 125 ---------------TAYYPRKMMKTGQLAVSYDQSPRAFAKKMNVTEDVAHMFFENFDE 169 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV--MRRHKRDVHIVLPSSRRL-- 568 + KD E +R V + L S R+ Sbjct: 170 TFPSFKPMVKDYREMMKRDGYVETLFGRKRRFPDFNEVAAFVKRNEQRLYRLYSERKRLQ 229 Query: 569 VYSDVKGDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKN---- 616 ++ + TA +++ + ++Q DIL Sbjct: 230 NITNPRDADRKRLTAVQDEIDILSAKRGLVGYWIRAAFNAVIQGTGADILKLIGIRNAAV 289 Query: 617 ATKNGYDIVLTVHDEIVSETPDTP--YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 + G+++ ++HDEI + P+ ++ + +M K +PL + + Sbjct: 290 CRERGWEMNASIHDEIKNSIPNDQFTAETIDLINEIMMKTVE--LSVPLVTDTVIEPCWM 347 >gi|320158402|ref|YP_004190780.1| DNA polymerase [Vibrio vulnificus MO6-24/O] gi|319933714|gb|ADV88577.1| DNA polymerase [Vibrio vulnificus MO6-24/O] Length = 687 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 79/510 (15%), Positives = 138/510 (27%), Gaps = 106/510 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L DIET A E E + +LL+ L Sbjct: 26 RILAFDIETNGLLMTVSRFHTAVCEDL--------VTGEVREYRPHEH-----HELLKDL 72 Query: 62 RDETVMCVAHN-SLFERILFKKTLGI-DIPSKRWICTSVLARTN---GLPSSLKNACL-A 115 + V+ VAHN ++ KK DI + I T VL+R + Sbjct: 73 YEADVL-VAHNGINYDVPALKKLFPFWDIQPTKVIDTLVLSRLLFADIKDRDMSGVRRWR 131 Query: 116 L---NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L K+ +L A + Y + + YC++DV Sbjct: 132 LREEGHEVTGWVLPPKLLGSHSLKAWGYRLQEYKGDYGEQEDAWAEFSEDMLIYCRQDVT 191 Query: 169 ATRELFKRL--------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 T +L +RL E ++ L G++ D+ +L + +R+ + Sbjct: 192 VTCKLIRRLMKEFPDASFKAMQLEHEIQWLMSQQERNGFKFDVAKAEQLYFKLLGDRETI 251 Query: 221 DEDI--------------------------------VKLTDGIIRSSRQTYALRMYLFLI 248 + + + + L Sbjct: 252 RQKLVDKFGTWYASNGVTTPKRSMNRMGMSYTAGAPYTKLKEVTFNPASRDHCAKVLQEA 311 Query: 249 TGI--DLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDG 303 I + D ++ + +LSH + A+ L + + V+ +G Sbjct: 312 GVIFTEFTDGNKPKIDEEVLSHIKLP-EAEMLNEFFMLNKRIGQIAEGNQAWLRLVTPEG 370 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + G++ GA TGR +P Sbjct: 371 FIHGSINPNGA-VTGRALHSHPNIAQVPSG-----------------------RAPYGQE 406 Query: 364 VRSCIIASNGKKLVVADLAGIEARV-----LAWIAGEDWKIKAFAN-GEDIYVTTYAKAF 417 R C +G L+ +D +G+E R W G K+ + + + Sbjct: 407 CRECFTVPDGWVLLGSDASGLELRCLGNRMFPWDKGAYNKVILEGDIHWENAQAAGFVDY 466 Query: 418 NTPIDKVSKEQRA---IGKVMELALGYQGG 444 DK + + K A Y GG Sbjct: 467 GVIRDKHNPDHELRRGKAKTFIYAFLYGGG 496 >gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K] gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K] Length = 1072 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 70/634 (11%), Positives = 150/634 (23%), Gaps = 189/634 (29%) Query: 114 LALNFSE--HLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + S+ + LI + + +L Y D + Sbjct: 448 EYMGLSDYAKSYTLNTAINLINEYRDVKDVVNDIDGGNFNYDWFPIELMHPYASGDTDVC 507 Query: 171 RELFKRLIPLSDGE-------------RDLWLLDQTINDRGYRIDLDLVLK--------- 208 R + +I + L I G DLD + + Sbjct: 508 RRIHCDVIKKLKEQDRPKSMHLLEVNYPRLTKSLARIESNGLYCDLDYMKENDESYESEM 567 Query: 209 -----------LQELIAQERKKLDEDIVKLTDGI--------------------IRSSRQ 237 + + + L + ++ + + S Sbjct: 568 AKNHATMREHWAVKEFEEYQYNLYQMALEEHEKKPKDRDKDIHQYRDKFKDGKWMFSPSS 627 Query: 238 TYALRMYLFLITGIDLV-------------------------DMSEGTLKSILSHSNITQ 272 ++ I GI L + + L + + Sbjct: 628 GDHKGRVIYDILGIQLPYDKEYVKEKPFNANVKEADLTWQDYKTDKKAIGYALDNLELKD 687 Query: 273 LAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 K+L+ + L ++ R + T R S QN Sbjct: 688 DVKELLELLKYHASMQTKRNSFTKKLLNMINKQKRTLHGSFSETGTETSRLSSSNPNLQN 747 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388 LP ++ ++ L+ +D + +E R+ Sbjct: 748 LPAHT------------------SDVNKFDYKHPIKRSFVSRFENGVLLGSDYSALEMRI 789 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + + +++F NGEDI+ T + +N P+++V+KE+R K + L + F Sbjct: 790 IGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAFGESPFSF 849 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K+ + + E + + Sbjct: 850 AG--------------------------------------------KNNMEVSEAEEIFE 865 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + V ++ E RR + ++ K + R Sbjct: 866 KYFQTKPSVKTSIDNVHEFVQQYGYVDTMHGHRRFIRSAQSTDKKIKNE-------GLRQ 918 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGY 622 + I+Q + + + Sbjct: 919 SF----------------------------NTIIQGSGSFLTNMSLTYLDDFIQSRNLKS 950 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655 ++ TVHD I+ + P + + +M P Sbjct: 951 KVIATVHDSILIDCPPEEAKIMAKVTIHIMENLP 984 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 54/211 (25%), Gaps = 36/211 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----------TEQSAMPS 55 D+ET S +P + + + +W + + + Sbjct: 220 DLETNSLKPDKEGSKP--------LVLSLSWRNGQGVTIPLYKSDFNWENGQDDIDEVLE 271 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-----NGLPSSLK 110 L +L + + VAHN ++ T + T V L Sbjct: 272 LLKNWLASKEDIKVAHNGKYDIKFLMSTENFK-DFESIQDTKVGWYLAVTQEVKESLRLS 330 Query: 111 NACLA------LNFSEHLTKMEEGKALIARFCKGSID--SPPYDCTRANHVQAWQLFGEY 162 + + K+ L+ F + + + + E+ Sbjct: 331 DLAYEVTDVGGYDKPLEDFKLWFVTKLLRFFSDKIKEIQKENKKIAKKEYDVKAPEYKEW 390 Query: 163 CKRD---VEATRELFKRLIPLSDGERDLWLL 190 + + ++ +S+ E+ L Sbjct: 391 LENKLNETVVELDDTEKKFRVSELEKKYIQL 421 >gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1] gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1] Length = 1046 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 67/456 (14%), Positives = 119/456 (26%), Gaps = 115/456 (25%) Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 ++ ++ + V + ++ + T+ ++ + + ++ Sbjct: 635 WKKNKPEEQIIWSDYKTNKVALDYVNSQAKEAGDKDTEDLTKMLAKFSIVNKISSSFTDS 694 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L E +L G G + T R S QNLP E Sbjct: 695 LREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLP------------------AEKSN 735 Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 L ++ ++ KL+ D + +E +LA + ED AF G+DI+ + Sbjct: 736 THLFNYKYPIKRMFVSRFPNGKLINLDYSSLEFHILALVTKEDSMTGAFLEGKDIHTSNA 795 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A ++ P + V EQR K + L Y G Sbjct: 796 ALMYDVPYEDVIVEQRKAAKSIGFGLIYGKGDA--------------------------- 828 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A L + + V + Sbjct: 829 -----------------ALAEDLGLSLEEAQEKINTFFKSKPRVKAFIDKAHKFAENNGY 871 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 RR ++ G S S+ R+ Sbjct: 872 VTTLNGFRR-----------------------------NLGGAFSTDYGKRSKAQRQS-- 900 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTL 647 I+Q + + + I+ TVHD I+ + P+ V TL Sbjct: 901 ----VNTIIQGSGAILTNTAVIILNELLAKSKFKSVIIATVHDSILIDCPEEEIDKVSTL 956 Query: 648 C-SLMTKN-PSWAKG--------LPLKAEGYEAKRY 673 +M W P++AE K Y Sbjct: 957 ALYVMEHLDYPWLFTNYKGKRIRYPIEAEVDIGKTY 992 >gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 375 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 112/362 (30%), Gaps = 53/362 (14%) Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 E +++T +A P A VR+C I G V ADL IE R++A Sbjct: 7 YHEIVRKLITSNEKAPKGTNLQNLPAKGAGVRVRNCFIPRKGFTFVGADLGQIEPRIMAH 66 Query: 392 IA----GEDWKIKAFANGEDIYVTTYAKAFNTPIDKV---------SKEQRAIGKVMELA 438 I G++ + F +G D+Y T + F + E R + K +LA Sbjct: 67 IMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGLEEKYCLDEAYDPTGTFEPRKLMKTGQLA 126 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + Y K F +++ + ++ + + + ++++ + L Sbjct: 127 VSYDQSPKSF-----AKKMNVTEEVAHMFFENFDRTYPSFRTMVKDIREEMKSCGYVETL 181 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G + ++ E I R D+ Sbjct: 182 FGRKRRFP------------DFNEVASQTAR---NEQKLIRLYTERKRLRNKKNPTAADM 226 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616 R D S +R ++Q DIL Sbjct: 227 R------RLTAVQDEIDILSEKRGLVGYWLRAA------FNAVIQGTGADILKLIGIRNA 274 Query: 617 --ATKNGYDIVLTVHDEIVSETPDTPYFS--VGTLCSLMTKNPSWAKGLPLKAEGYEAKR 672 + G+++ ++HDEI + P+ + + +MT+ +PL + R Sbjct: 275 EICRERGWEMNASIHDEIKNSIPNEQLTEGTIDLINEIMTQTVE--LSVPLITDTVIEPR 332 Query: 673 YR 674 + Sbjct: 333 WM 334 >gi|119493749|ref|ZP_01624319.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106] gi|119452494|gb|EAW33680.1| DNA polymerase I (PolI) [Lyngbya sp. PCC 8106] Length = 874 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 77/647 (11%), Positives = 161/647 (24%), Gaps = 167/647 (25%) Query: 56 DLLQYLRDETVMCV------AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 L + L++ T + V N G+ + + + + L Sbjct: 34 QLSKILQEPTTVKVFADAVVGQN-------LLNQNGLKV-GGQIFDVKLADSLL--TAGL 83 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + ++ + L + A + E K + A Sbjct: 84 EV--------DNSIASISSRHLGKFSLESLPQDLLKLRDVLRVKLASEELIEVAKIEFNA 135 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T+ ++ G R+D + Q+ + +ER+ L+ + Sbjct: 136 TKA------------------TAQMSQNGVRLDTAWLKDKQQELEEERRGLESQVKDWLG 177 Query: 230 GIIRSSRQTYALRMY-------------LFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L F G+ L ++ ++S+ + + Sbjct: 178 EKLPDETDKIQLSDLTSTKKADKTQTLECFNRAGVPLESFNKNHIQSLTTE---HPILNQ 234 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 R + + L V + ++ T A TGR S QN+P Sbjct: 235 FQRMRTVNDLIGNKGIQGLLNVVDDENKVYPTWHQNSA-ATGRMSATKPAIQNIP----- 288 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADLAGIEARVLAWI 392 ++ II + V AD + E R+LA + Sbjct: 289 -------------------------ASLKRAIIPEQQGEEKQVFVRADYSQQELRILAQL 323 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 G+ A+ G D + T + P ++++ E+R K + Y + ++ A Sbjct: 324 TGDKTLTSAYQEGRDAHRLTASLMTGKPENQITSEERQRAKPVNFGKIYGQSPQGLQSYA 383 Query: 453 S-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 G++ + Sbjct: 384 KVSYGVEFSIEDAMKF-------------------QAAMDKG------------------ 406 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + V + + + + F + + R+ + Sbjct: 407 --YPSVARHEQQVRQDFKHQ--------------WNAALSSEDNQYPQTRTLLGRKREWQ 450 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC----EGMKNATKNGYDIVLT 627 + +N +Q D+ + G I L Sbjct: 451 PQQHQYPPINE--------------ALNAPIQGSGADMSKLALALLPDALQETGAKITLI 496 Query: 628 VHDEIVSETPDTPYFSVGTLCS-LMTKN-PSWAKGLPLKAEGYEAKR 672 HD+IV ++ VG + +M +P AE Sbjct: 497 RHDKIVLTAQESQAEKVGKILESVMKVAGLRITPDIPTVAEVSICDN 543 >gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 103 Score = 117 bits (292), Expect = 8e-24, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ ID++T S + K G + YAE I L + D PV ++D +P ++L Sbjct: 2 MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL 84 L DE V A N+ FER+ L Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWL 87 >gi|315181204|gb|ADT88118.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 676 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 87/690 (12%), Positives = 178/690 (25%), Gaps = 191/690 (27%) Query: 43 KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--A 100 + + S P LQ L D V V H++ + +LG++ + W T + A Sbjct: 108 FVINVASPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-EPRYWWDTCIAEKA 163 Query: 101 RTNGLP----------------------------SSLKNACLALNFSEH---LTKMEEGK 129 R G L + N K+ G Sbjct: 164 RYLGQHNNAKPTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSDLASSAKLLMGS 223 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLW 188 C + + + Y + + + L E Sbjct: 224 EQ---DCPSFSEFQIER----TSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWV 273 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + I G+++ D ++ E ++ +++ +L + + + LF Sbjct: 274 VTNAAIEWNGFKVCRDKCSQILEACERKLNLYSQELAQLGM---TNPNSQHQKQA-LFAS 329 Query: 249 TGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL-SEAVSSDGR 304 G+ + +LS + A + ++ K L V SDGR Sbjct: 330 LGLLHHFKDGEDYSFQREMLSKNYALHPAVAFLAKYTHID--SVYKDVILQPGIVGSDGR 387 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + A TGR + LP + Sbjct: 388 VHSEQKQLTA-ATGRQATVAPNILGLP------------------------------AVL 416 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF----------ANGEDIYVTTYA 414 R ++A +G + DLA IE + A + G+ +K + + + Sbjct: 417 RPLVVAQDGYAIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCDELESEY 476 Query: 415 KAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + ++ + E+RAI K L L Y + L+ Sbjct: 477 RICDSSTFKEKYPEKRAIMKQCTLGLIYG-----ITSFGIAKKLN--------------- 516 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + + + + + + + + A Sbjct: 517 ------------------------ISVNKATELMDKFLSMFPELQKAIEKMPQYGALRGH 552 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + R R+L + +++ Sbjct: 553 VSTATGLHRY----------------------RQLDAKRGHTEKNWM------------- 577 Query: 594 GGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTL-C 648 VQ + + + +++ +HD V E P V L Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYDAKLIVAMHDAFVFEVPKEHLSEVSELTA 633 Query: 649 SLMTKNP-SWAKGLPLKAEGYEA--KRYRK 675 LMT+ L ++A+ + + K Sbjct: 634 QLMTQVVQEMYPQLKIRADINISQPDCWTK 663 >gi|315282488|ref|ZP_07870892.1| DNA polymerase I [Listeria marthii FSL S4-120] gi|313613872|gb|EFR87612.1| DNA polymerase I [Listeria marthii FSL S4-120] Length = 143 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 44/176 (25%) Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + V + +D+ + RR + Sbjct: 1 DFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRG-------- 52 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 + + +NT +Q + DI+ + M Sbjct: 53 ---------FAERTAMNT------------------PIQGSAADIIKKAMILMSERLKSE 85 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRY 673 K ++L VHDE++ E P+ + + +M +PLK + + Sbjct: 86 KLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE--LSVPLKVDSAFGDTW 139 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 3/69 (4%), Positives = 14/69 (20%), Gaps = 9/69 (13%) Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 F + + + + E + ++ R ++ ++ Sbjct: 2 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHR---------RRYIPEIVSRNFNVRG 52 Query: 527 GFACVVQEG 535 Sbjct: 53 FAERTAMNT 61 >gi|291165127|gb|ADD81154.1| gp49 [Rhodococcus phage ReqiPine5] Length = 600 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 103/697 (14%), Positives = 189/697 (27%), Gaps = 198/697 (28%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----LWDRTEQSAMPSDLLQYLR 62 DIET + I ++W + L D + ++ + + Sbjct: 40 DIET------------KGIDIFTIRCITFSWHGSDGRTHGILLDMGRRPEDLAEAKRIAQ 87 Query: 63 DETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGL----PSSLKNACLAL 116 + V HNS F+ + G+ R T VL+R P L+ + + Sbjct: 88 RAEHL-VFHNSPFDVVPLV-HFGVMGREEVFRVWDTIVLSRMAFPDVMVPKKLEAMAVKM 145 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL--- 173 S+ ++ +G ++ + Y A+ + D T L Sbjct: 146 RVSD---ELPDGLKMMIKASGLKSKDGWY----AHGDIDRPAYRHGAIADTVVTLRLLPV 198 Query: 174 -----FKRLIPLS----------------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 ++L D E + + + RG R+DLD + ++ Sbjct: 199 LIDAIHRKLTDHPFTDRGLQTTDEAQALVDREMLVNRVMLWRSARGIRVDLDYMHTYRDS 258 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSHSNI 270 +A + + + ++ L L + G+ + G L S Sbjct: 259 VADKVARAELELKNYGVD----PGNGAQLVAKLDEVGGLPENWPRTATGKLASNKDAMEK 314 Query: 271 TQLAKDLILNRLASSGSAI-LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + +R+ + + I L+ ++ GR ++ GAS TGR S Q Sbjct: 315 LGDHPLALAHRIYADETKIGQYLDAVASRAEVTGRCHPSVAILGASATGRTSYSDPPLQQ 374 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 R ++ +G+ L+ D + IE V+ Sbjct: 375 FSADARP-------------------------------VLVDDGQGLMSVDWSAIEPVVV 403 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A +AG+ + F G D+Y PI + + R KV+ L Y Sbjct: 404 ANMAGDQEFLAPFVAGADLYE---------PIQRAAGIDRKRAKVVLLGTLY-------- 446 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + A K +++ Sbjct: 447 ------------------------------------GEGKGKMAADLKCSYEQAVQIQRG 470 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + V + + + A IV R L Sbjct: 471 MFSAMPKVERFLETVKSVAAQ--------------------------FGIIVTADGRILD 504 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIVLT 627 G+ + K T I Q + + + + G +I L Sbjct: 505 VPKFNGEVAAY---------------KATNYITQGTAYSVAADTIVRLHDAGLSDEIHLF 549 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKG 660 +HDE V + M P W KG Sbjct: 550 MHDE--FVVSRDAAPDVEAI---MQTPPEFMVRWTKG 581 >gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 478 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 26/137 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 352 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 401 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L DE V V N ++R + + GI++ + T + + + Sbjct: 402 LELLKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMD 459 Query: 111 NACLA-LNFSEHLTKME 126 + L + Sbjct: 460 SLSDRWLKHKTITFEDI 476 >gi|50725504|dbj|BAD32974.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] gi|50725832|dbj|BAD33362.1| putative PolI-like DNA polymerase [Oryza sativa Japonica Group] Length = 551 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 46/337 (13%), Positives = 80/337 (23%), Gaps = 81/337 (24%) Query: 286 GSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L +GR+ +L + TGR S QN P E+ Sbjct: 287 KLISGFIVPLQGDRISCKEGRIHCSLNIN--TETGRLSARTPNLQNQPALEKDRY----- 339 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A+ G L+VAD +E R+LA + ++AF Sbjct: 340 -------------------KIRHAFVAAPGNTLIVADYGQLELRILAHLTNCKSMLEAFK 380 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 G D + T + D V + KV G D Sbjct: 381 AGGDFHSRTAMNMYQHVRDAVEE------------------KKVLLEWHPQPGQDKPPVP 422 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + + + + K+ K W + V K Sbjct: 423 LLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVSAWQKK 482 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + R + ++ Sbjct: 483 QKAFALEKCEVYTLL--------------------------GRSRQFPNM---THAGPGQ 513 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 + R VQ + D+ M +N Sbjct: 514 KGHVERAAINAP------VQGSAADVAMCAMLEIERN 544 >gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 2/91 (2%) Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYG KL ENIVQA SRD+L E M+ G +V+ +HDE V + P S+ Sbjct: 4 KKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNR--SL 61 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T+ LMTK P WA GL L A G+ + Y+K Sbjct: 62 DTMVQLMTKVPDWANGLILNAAGFVSDFYKK 92 >gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 1564 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 111/660 (16%), Positives = 181/660 (27%), Gaps = 159/660 (24%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D+ET +G YA + D + + Sbjct: 999 LTVDVETTGYP----LGHRDYA----LRTIQL---GNDAFAIDFDAADPEQAQVAGRHVG 1047 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGLPS-----SLKNAC-LA 115 M AH++ + I ID+ R T + A+ S LK Sbjct: 1048 AAAMLHAHSATADLIPLAHAGLIDLDDAWSRMHDTVIPAKLADPASTGSDPGLKKLAGAV 1107 Query: 116 LNFSEHLTKMEEGKALI----ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + T EEG+ + + +P A A + Y DV Sbjct: 1108 LGDAAVSTAAEEGRKALFKAGKWLTEVKSTTPISRSGWAQVNPACETMIRYAASDVIDDA 1167 Query: 172 ELFKRLIPLSDGERDLWLLDQTIN----DRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L RL PL + L Q + DRG R+D DLV +L E I Sbjct: 1168 ALALRLPPLPPELLERERLAQRMTARVADRGLRLDADLVERLHAEQTAALTAASEHIRAF 1227 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILN 280 + + + L G L ++G L + + L+ Sbjct: 1228 G---VDNPGSDQQVAAAL-ERLGAPLPRTKTGRPSVAKGVLDPLKNVDGEIGDLVRARLD 1283 Query: 281 RLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L L + V + DGR R T + A+ TGR S Q +PR+ Sbjct: 1284 YQTAENRLGLFLEPYRQLVTNGDGRARPT-IYTLAADTGRMSCVRPNLQQVPREGG---- 1338 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 R+CI A G L+ AD +G+E RV A ++ + + Sbjct: 1339 ------------------------FRACITADPGHVLISADFSGVELRVAAALSQDQNLM 1374 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 A+ + A+ K +R K G L Sbjct: 1375 AIVADPDRDIHREIAQL--VWGPDAGKPERYQA--------------KRKVFGRLYGSGL 1418 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + +A G+ Sbjct: 1419 NGLITSDPP-----------------------------VSEPIAKAIIEAMDLMTPGLSS 1449 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + +G S R + +G Sbjct: 1450 WSRMVADGV-------------------------DAGRTEFQAYSGRTIYMPTDRG---- 1480 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN--ATKNGYDIVLTVHDEIVSETP 637 Y G +Q +R++L + + T+ G ++L VHDE+V P Sbjct: 1481 -------------YAGP--NYCIQGTARELLIDALVRWSGTRWGNAVLLPVHDELVVHVP 1525 >gi|269964624|ref|ZP_06178862.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269830523|gb|EEZ84744.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 676 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 92/690 (13%), Positives = 178/690 (25%), Gaps = 191/690 (27%) Query: 43 KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--A 100 + + S P LQ L D V V H++ + +LG++ S+ W T + A Sbjct: 108 FVINVANPSIRPK--LQSLFDLPVTYVTHDAKPDLHCI-WSLGLN-ESRYWWDTCIAEKA 163 Query: 101 RTNGLP----------------------------SSLKNACLALNFS---EHLTKMEEGK 129 R G L + N K+ G Sbjct: 164 RYLGQHNNAKSTQDVSTVEKIQIQKTLAEQNTVFYGLADTAQRYNVQSGLASSAKLLMGS 223 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLW 188 C + + Y + + + L E Sbjct: 224 EQ---DCPSFSALQI----EQTSQLSITVAKLYLTQSQSCLMFGIHQHL---ISIEMPWV 273 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + I G+++ D ++ E ++ + + +L + + + LF Sbjct: 274 VTNAAIEWNGFKVCRDKCRQILEACERKLSLYSQGLAQLGM---TNPNSQHQ-KQVLFAS 329 Query: 249 TGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL-SEAVSSDGR 304 G+ + +LS + A + ++ K L V SDGR Sbjct: 330 LGLLHHFKDGDDYSFQREMLSKNYALHPAVAFLAKYTHID--SVYKDVILQPGIVGSDGR 387 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + A TGR + LP + Sbjct: 388 VHSEQKQLTA-ATGRQATVAPNILGLP------------------------------AVL 416 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE-----------DIYVTTY 413 R ++A +G + DLA IE + A + G+ +K + G+ + Y Sbjct: 417 RPLVVAQDGYVIGEVDLAQIEVAIAAGVYGDSNLVKMYNQGDLYTAMAQEFFCEELEPEY 476 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + + + E+RAI K L L Y + L+ Sbjct: 477 STCDSAVFKEKYPEKRAIMKQCTLGLIYG-----ITSFGIAKKLN--------------- 516 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + + + + + + + + A Sbjct: 517 ------------------------ISVNKATELMDKFLSMFPELQKAIDKMPQYGALRGH 552 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 + R R+L + +++ Sbjct: 553 VSTATGLHRY----------------------RQLDAKRGHTEKNWM------------- 577 Query: 594 GGKLTENIVQAISRDILCEGMKNATK--NGYDIVLTV--HDEIVSETPDTPYFSVGTL-C 648 VQ + + + Y+ +L V HD V E P V L Sbjct: 578 ----VNMPVQGTAAALFKAAGNRLHQLYKSYNAILIVAMHDAFVFEAPKECLNEVSELTA 633 Query: 649 SLMTKNP-SWAKGLPLKAEGYEA--KRYRK 675 +MT+ L ++A+ + + K Sbjct: 634 QIMTQVVQEMYPQLKIRADINISQPDCWTK 663 >gi|29566249|ref|NP_817817.1| gp56 [Mycobacterium phage Rosebush] gi|29424974|gb|AAN01898.1| gp56 [Mycobacterium phage Rosebush] Length = 609 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 102/706 (14%), Positives = 169/706 (23%), Gaps = 188/706 (26%) Query: 15 PLPKVGVWAYAEQAVITLCAYAWDDEPV----KLWDRTEQSAMPSDLLQYLRDETVMCVA 70 + G+ I AW L D A + + + V Sbjct: 46 DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWPAHRAAARDVFARASKL-VF 101 Query: 71 HNSLFERILFKKTLGIDI-PSKRWICTSVLARTN-----GLPS---SLKNACLAL----- 116 HN+ F+ ID ++ T +LAR G P +L+ + L Sbjct: 102 HNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLLGLVD 161 Query: 117 --NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 E K G I + P A L E R Sbjct: 162 VAGGMERAFK-AAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVEWTTS 220 Query: 175 KRLIPLSDG-ERDLWLLDQTIND----------RGYRIDLDLVLKLQELIAQERKKLDED 223 E + + + RG +D D + + +E + K+L+ Sbjct: 221 HPFAEFGATTEAEALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYRE--REHDKRLEHA 278 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLAKDLI 278 + + + AL +L + + K L + A Sbjct: 279 AFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVAAAQRA 338 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + L +S + GR + GAS TGR S + Q P+ R Sbjct: 339 LAQSDKVL---GYLEKVSRQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDARP-- 393 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 II +G+ L D A IE +A +AG+ Sbjct: 394 -----------------------------IIVDDGQGLTSVDWAQIEPVTMALMAGDREF 424 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + F + PI + R + KV+ LA Sbjct: 425 LAPFFENDADLYE--------PIMRACGIDRPMAKVILLATM------------------ 458 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A + + +++ A Sbjct: 459 --------------------------YGQGARSMARRIGHTEESAAQIRRQMLAAMPASR 492 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + IV R L Sbjct: 493 DFMAKVESIAITHG--------------------------RIVTGGGRILPVDQQGS--- 523 Query: 579 YLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEIVSET 636 + I Q + D+L + + G + + HDE+V +T Sbjct: 524 ----------------YRAVNYICQGSAYDVLAHTIVRLDEAGLSGHVQLAMHDELVVDT 567 Query: 637 PDTPYFSVGTLCSLMTKNPS----WAK--GLPLKAE-GYEAKRYRK 675 + +M P WAK L+ + R+ K Sbjct: 568 -----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 608 >gi|281416182|ref|YP_003347917.1| DNA polymerase [Vibrio phage N4] gi|237701489|gb|ACR16482.1| DNA polymerase [Vibrio phage N4] Length = 678 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 96/730 (13%), Positives = 185/730 (25%), Gaps = 113/730 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58 M L DIET ++ C++ D K + + DL Sbjct: 1 MKLLISDIETNGLLDT--------VDKFH---CSWTVDYFTGEWKAYRPWDFEQYIKDL- 48 Query: 59 QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111 + E + V HN ++ KK G ++IP + + T V++R Sbjct: 49 EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKRNVLDTLVMSRLLHSNLK-DT 107 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L K+ +L A + Y A ++ + +YCK+DV+ T Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTL 167 Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 +LF++ + + E + L GY D +L +A R Sbjct: 168 KLFEKFMSDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227 Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 ++ ++ + + L Y + + TL L Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + SS + I+K+ V +D G + + + Sbjct: 288 YLKDAPFTPIQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLV 346 Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 + LP+ E E ++ Q + A + + NG A + Sbjct: 347 PEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443 + I P +V + +EL LG+ Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHRDYHTGKPWIQVGVD----ASGLELRCLGHFM 458 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + D + + + G Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518 Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + K + + L + + + GG+ + Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616 I R++ ++Q+ I + + Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604 Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663 GY + VHDE +V M + W PL Sbjct: 605 KGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664 Query: 664 KAEGYEAKRY 673 EG + Sbjct: 665 DTEGKIGANW 674 >gi|153840366|ref|ZP_01993033.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149745971|gb|EDM57101.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 166 Score = 113 bits (283), Expect = 8e-23, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 26/144 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A D+ + Sbjct: 35 FAFDTETDSLDYMV----------ANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWV 84 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 L L D+ V N ++ + + GI++ ++ T + + + Sbjct: 85 LEQLKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIKY-DTMLASYVYNSVGGKHDMD 142 Query: 111 NAC-LALNFSEHLTKMEEGKALIA 133 + L S + GK Sbjct: 143 SLALRFLQHSCISFEQIAGKGKTN 166 >gi|167945573|ref|ZP_02532647.1| DNA polymerase I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 161 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 21/143 (14%) Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNAC-LALNF 118 D V N ++ + + GI++ + T + + + + L++ Sbjct: 1 DPEQKKVGQNLKYDMSVLARY-GIELRGIAF-DTMLESYVLDSTASRHDMDSLAKKYLHY 58 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + GK + Y D + T L + L Sbjct: 59 DTIHFEDVAGKGKKQL---------------TFDQIPLESAAPYAAEDADITLRLHQTLW 103 Query: 179 PLSDGERDLWLLDQTINDRGYRI 201 P E L L + + Sbjct: 104 PRLQAEPTLASLTTDLEVPLVPV 126 >gi|109521836|ref|YP_655732.1| gp52 [Mycobacterium phage Qyrzula] gi|91980780|gb|ABE67498.1| gp52 [Mycobacterium phage Qyrzula] Length = 600 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 102/710 (14%), Positives = 171/710 (24%), Gaps = 196/710 (27%) Query: 15 PLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDR------TEQSAMPSDLLQYLRDETV 66 + G+ I AW D ++ + A + Sbjct: 37 DIETPGLDR---NFEINCLTAAWIGWDGTIESVLLDPIRWPAHRQAARDVFARAC----- 88 Query: 67 MCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTN-----GLPS---SLKNACLAL- 116 V HN+ F+ ID ++ T +LAR G P +L+ + L Sbjct: 89 KLVFHNASFDVPPLWHHGLIDAGEIRKIADTVLLARFAYPDSYGPPLPRKTLEACAVHLL 148 Query: 117 ------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 E K G I + P A L E R Sbjct: 149 GLVDVAGGMERAFK-AAGFKTIQDGYENMNIDAPIYRQGAMADTVATLLLEPVLRRKCVE 207 Query: 171 RELFKRLIPLSDG-ERDLWLLDQTIND----------RGYRIDLDLVLKLQELIAQERKK 219 E + + + RG +D D + + +E + K+ Sbjct: 208 WTTSHPFAEFGATTEAEALEVLEVQEIAHWVMLQRSARGLAVDRDYLDEYRE--REHDKR 265 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-----LVDMSEGTLKSILSHSNITQLA 274 L+ + + + AL +L + + K L + A Sbjct: 266 LEHAAFLAQYDLEGGTGKGPALVKWLEARGELPSDWPRTPKGAPSAAKEHLETLDHPVAA 325 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 LA S + L ++ + GR + GAS TGR S + Q P+ Sbjct: 326 AQ---RALAVSDKVLGYLEKVARQAAVTGRCHPQVAILGASATGRMSYGSPELQQFPKDA 382 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 R II +G+ L D A IE +A +AG Sbjct: 383 RP-------------------------------IIVDDGQGLTSVDWAQIEPVTMALMAG 411 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + F + PI + R + KV+ LA Sbjct: 412 DREFLAPFFEKDADLYE--------PIMRACGIDRPMAKVILLATM-------------- 449 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 A + + +++ A Sbjct: 450 ------------------------------YGQGARSMARRIGHTEESAAQIRRQMLAAM 479 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + IV R L Sbjct: 480 PASRDFMAKVESIAITHG--------------------------RIVTGGGRILPVDQQG 513 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV--HDEI 632 + I Q + D+L + + G + + HDE+ Sbjct: 514 S-------------------YRAVNYICQGSAYDVLAHTIVRLDEVGLSGHVQLAMHDEL 554 Query: 633 VSETPDTPYFSVGTLCSLMTKNPS----WAK--GLPLKAE-GYEAKRYRK 675 V +T + +M P WAK L+ + R+ K Sbjct: 555 VVDT-----DVAAEVEHIMMTPPEFLTRWAKRDDFMLRTDRADMGHRWAK 599 >gi|325171294|ref|YP_004251265.1| DNA polymerase [Vibrio phage ICP3] gi|323512000|gb|ADX87462.1| DNA polymerase [Vibrio phage ICP3] gi|323512146|gb|ADX87605.1| DNA polymerase [Vibrio phage ICP3_2008_A] gi|323512194|gb|ADX87652.1| DNA polymerase [Vibrio phage ICP3_2007_A] Length = 678 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 99/730 (13%), Positives = 185/730 (25%), Gaps = 113/730 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58 M L DIET ++ CA+ D K + + DL Sbjct: 1 MKLLLSDIETNGLLDT--------VDKFH---CAWTVDYFTGEWKAYRPWDFEQYIKDL- 48 Query: 59 QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111 + E + V HN ++ KK G ++IP K + T V++R Sbjct: 49 EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLK-DT 107 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L K+ +L A + Y A V+ + +YCK+DV+ T Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQVTL 167 Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 +LF++ + + E + L GY D +L +A R Sbjct: 168 KLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227 Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 ++ ++ + + L Y + + TL L Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + SS + I+K+ V +D G + + + Sbjct: 288 YLKDAPFTPVQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLV 346 Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 + LP+ E E ++ Q + A + + NG A + Sbjct: 347 PEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443 + I P +V + +EL LG+ Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHRDYHTGKPWIQVGVD----ASGLELRCLGHFM 458 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + D + + + G Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518 Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + K + + L + + + GG+ + Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616 I R++ ++Q+ I + + Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604 Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663 GY + VHDE +V M + W PL Sbjct: 605 KGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664 Query: 664 KAEGYEAKRY 673 EG + Sbjct: 665 DTEGKIGANW 674 >gi|323512097|gb|ADX87557.1| DNA polymerase [Vibrio phage ICP3_2009_A] Length = 678 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 99/730 (13%), Positives = 185/730 (25%), Gaps = 113/730 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58 M L DIET ++ CA+ D K + + DL Sbjct: 1 MKLLLSDIETNGLLDT--------VDKFH---CAWTVDYFTGEWKAYRPWDFEQYIKDL- 48 Query: 59 QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111 + E + V HN ++ KK G ++IP K + T V++R Sbjct: 49 EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLK-DT 107 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L K+ +L A + Y A V+ + +YCK+DV+ T Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWVEFNEPMMDYCKQDVQITL 167 Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 +LF++ + + E + L GY D +L +A R Sbjct: 168 KLFEKFMGDTWYFPNGADGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227 Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 ++ ++ + + L Y + + TL L Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKKPTLAKTL 287 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + SS + I+K+ V +D G + + + Sbjct: 288 YLKDAPFTPVQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLV 346 Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 + LP+ E E ++ Q + A + + NG A + Sbjct: 347 PEEFLPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443 + I P +V + +EL LG+ Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHRDYHTGKPWIQVGVD----ASGLELRCLGHFM 458 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + D + + + G Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518 Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + K + + L + + + GG+ + Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616 I R++ ++Q+ I + + Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604 Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663 GY + VHDE +V M + W PL Sbjct: 605 KGMQAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664 Query: 664 KAEGYEAKRY 673 EG + Sbjct: 665 DTEGKIGANW 674 >gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 300 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 83/305 (27%), Positives = 125/305 (40%), Gaps = 28/305 (9%) Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 DM + T++ L + + ++L+ R +S ++ K L S DGRLRGTLQF G Sbjct: 14 PDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQFNG 73 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIA 370 ASRTGRW+G +FQP NLPR S+ ++ I A+ G D + L S +RSC+IA Sbjct: 74 ASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIA 133 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 KKLVVADL+ IE RVLAW+AGE K++AF + + S E Sbjct: 134 PTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQ--------GVDGTWHSGE--- 182 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 A+ + T+ + + + ++ + + A + Q Sbjct: 183 -------AITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQ---AVTKQQR 232 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + +L V DL +A R +L+ Sbjct: 233 QIGKVQELALGYGGGVGAFAAFA----AMYHIDLEAMAEQAALPPLLDTAARPFPHMKLL 288 Query: 551 MRRHK 555 R Sbjct: 289 RRASN 293 >gi|71662488|ref|XP_818250.1| DNA polymerase theta (polymerase domain only) [Trypanosoma cruzi strain CL Brener] gi|70883490|gb|EAN96399.1| DNA polymerase theta (polymerase domain only), putative [Trypanosoma cruzi] Length = 881 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 69/572 (12%), Positives = 144/572 (25%), Gaps = 143/572 (25%) Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 A+ AT +F L + E + L + ++ G ++ +++ + + Sbjct: 376 AYYEAYLQSVESSGATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLE 435 Query: 215 QERKKLDED----IVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILS 266 Q+ K L E + + S L G ++G ++ + Sbjct: 436 QQIKALIEKGNVALRAMATASNESIDMETVDAWNLIKTLQSQFGGPW-TFAKGNVEEQMQ 494 Query: 267 HSNITQLAKD------------LILNRLASSGSA---ILKLNTLS--------EAVSSDG 303 K + R S K ++ E S++G Sbjct: 495 QIGAYLDEKQSCADSNVARIWLALHERREFKRSLMEGFTKGASMQARLIAVPEEMASTEG 554 Query: 304 RLRGTLQFYGA----------------SRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 GA + T R Q + + + Sbjct: 555 GGHSNPHHVGAQYRLFFSVHAKWSVHHATTSRLFCSRPCLQTVAKNPP-------ISRTA 607 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R G LV D IE RV+A ++G+ ++ G D Sbjct: 608 PSSSPPVTIFTNPEWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRGGSD 667 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 + + P V+ R KV+ L Y G + + ++ Sbjct: 668 VLAEMALRVMQLPRLADVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKETTPSAEQP 727 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + +++ + V L Sbjct: 728 PLS---------------------------------ARQFLRSFNQCYPAVQGF---LRS 751 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 E + + ++ ++ + + L Sbjct: 752 TRLRAFHEKRCTTLNGLRDLSGEPDGNRRKQMAVAL------------------------ 787 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI-----------VLTVHDEIVSE 635 +Q + IL M + +++ VL+VHDE+V Sbjct: 788 --------------AIQGGAAVILHHAMVEVHEKRHELLPFLPAAAVALVLSVHDELVYA 833 Query: 636 TPDTPYFSVG-TLCSLMT-KNPSWAKGLPLKA 665 PD+ V + ++ + + + +PL Sbjct: 834 VPDSAVSIVAPKIKQILEQQAAALSLSVPLPV 865 >gi|32442299|gb|AAP82220.1| DNA polymerase [Podovirus GOM] Length = 396 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 112/464 (24%), Gaps = 127/464 (27%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T VL+R SL+ L F Sbjct: 1 DTLVLSRLYNPQMEGGHSLRAWGERLGF--------------------------RKGDHD 34 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRID 202 + EYC+RD++ T +L+ L + E ++ + G+++D Sbjct: 35 DWSTLSDEVIEYCERDLDVTAKLYTELTEKLEEFQGESIELEHEVQRIITEQEKTGWKLD 94 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTD--------------------------------- 229 + +Q + Q +++ ++ K Sbjct: 95 VKRAFDIQAKLKQRSMEVEREVHKTFTPLPVFDKEVTPKYNKDGSLSVVGLKFLGDRYTD 154 Query: 230 ---------GIIRSSRQTYALRMYLFLITGIDLV----DMSEGTLKSILSHSNITQLAKD 276 + + +L G + +LS +I + Sbjct: 155 VAGPFSRVSFPEFNLGSRQQIARHL-QFFGWKPKLFTEKGQAIVDEGVLSRVDIPE--AK 211 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 LI L ++ + EAV DGR+ G + GA TGR + +P Sbjct: 212 LIAEYLLIQKR-TAQVQSWIEAVEEDGRVHGRVNPIGA-VTGRMTHSSPNMAQVP----- 264 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 R C G +LV D AG+E R+LA ++ Sbjct: 265 ------------------ASYSPYGTECRECWTVPKGYRLVGIDAAGLELRMLAHYMNDE 306 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 T T R + K A Y G + Sbjct: 307 E---------YTNEVTNGDVHTTNQKNAGLATRDLAKTFIYAFLYGAGDAKIGAI----- 352 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + L G Sbjct: 353 VGGSRRDGAELKEKFLNNTPPLRHLRERVAKSAKR-GYLKGLDG 395 >gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] Length = 562 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 83/506 (16%), Positives = 143/506 (28%), Gaps = 136/506 (26%) Query: 158 LFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA-- 214 L Y ++ V R+ L+ E L+ + G D KL + + Sbjct: 141 LLAVYAEQLVRTEAAEHPDRMRLLTTAESAGMLIAAEMRRAGVPWSADRHRKLLDELLGE 200 Query: 215 --------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 Q +L E++ + +R ++ F GI L L+ I Sbjct: 201 RYPGGLEPQRLVELAEEVSRAFGTRVRPDLPAEVVKA--FGRAGITLGSTRAWELERI-- 256 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 A + +L ++ DGR R G + +GRW+ Sbjct: 257 ----DHPAVEPLLRYKKLYRLHTAHGWAWLQSWVRDGRFRPEY-LPGGTVSGRWTTNGGG 311 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 +P+ VR ++A G +LVVAD +E Sbjct: 312 ALQIPK------------------------------VVRRAVVADPGWRLVVADADQMEP 341 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA I+ + ++ +G D+Y T D+ +R + K+ L Y Sbjct: 342 RVLAAISRDPGLMEVAGSGRDLYATLS--------DRAFSGRRELAKLALLGAVY----- 388 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G L+ + Sbjct: 389 -----GQTSGDGLKHLAAL----------------------------------------- 402 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 R + + + A +EG + P + + LP Sbjct: 403 ----RRRFPAAVAY----VDEAARAGEEGRLVRTWLGRTCPPVGGGAEEPADEAGLP--- 451 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD--ILCEGMKN--ATKNGY 622 + + SY +TA+++ G +VQ + D +L T G Sbjct: 452 -----REQEEPSYGSTASARAR-----GRFTRNFVVQGSAADWALLMLAALRRSLTGAGL 501 Query: 623 D--IVLTVHDEIVSETPDTPYFSVGT 646 IV HDE++ P +V Sbjct: 502 RAEIVFFQHDEVIVHCPQEEADTVRE 527 >gi|68299732|ref|YP_249581.1| DNA polymerase [Vibriophage VP4] gi|66473271|gb|AAY46280.1| DNA polymerase [Vibriophage VP4] Length = 678 Score = 110 bits (276), Expect = 6e-22, Method: Composition-based stats. Identities = 97/730 (13%), Positives = 184/730 (25%), Gaps = 113/730 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQSAMPSDLL 58 M L DIET ++ CA+ D K + + DL Sbjct: 1 MKLLLSDIETNGLLDT--------VDKFH---CAWTVDYFTGEWKAYRPWDFEQYIKDL- 48 Query: 59 QYLRDETVMCVAHN-SLFERILFKK----TLG--IDIPSKRWICTSVLARTNGLPSSLKN 111 + E + V HN ++ KK G ++IP K + T V++R Sbjct: 49 EACAAEGGVIVFHNGIKYDYPALKKLKKLYFGKNLNIPKKNVLDTLVMSRLLHSNLK-DT 107 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L K+ +L A + Y A ++ + +YCK+DV+ T Sbjct: 108 DAGLLRSGRITGKLYGSHSLKAWGMRLGELKGDYGEQEAAWIEFNEPMMDYCKQDVQVTL 167 Query: 172 ELFKRLIPLSDG--------------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 +LF++ + + E + L GY D +L +A R Sbjct: 168 KLFEKFMGDTWYFPNGVDGLSESVLLEHEAAWLLAKQERNGYAFDTQGAERLYAEVAGRR 227 Query: 218 KKLDEDIVKLT---------DGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSIL 265 ++ ++ + + L Y + TL L Sbjct: 228 AEILMELTRTFGSWYEPKGGTQPFLHPKSGKPLHKYPRVKYPKAGSIWTSAKRPTLAKTL 287 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + SS + I+K+ V +D G + + + Sbjct: 288 YLKDAPFTPIQHVTF-NPSSRAHIIKVLKDCGWVPTDFTEAGNPIVDDDTLSLVIEHKLI 346 Query: 326 QPQNLPRQE-RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 + +P+ E E ++ Q + A + + NG A + Sbjct: 347 PEEFIPKVELIKEYLVIQKLIGQLAEGDNAWLRMDKGGYI-HGQVNPNGAVTGRATHSYP 405 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL-ALGYQG 443 + I P +V + +EL LG+ Sbjct: 406 NLAQVPSIRKYKG---VECRSLFGAEHHLDYHTGKPWIQVGVD----ASGLELRCLGHFM 458 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + D + + + G Sbjct: 459 AKFDDGEYINTILNGDIHTQNQIAAGLPTRDNAKTFIYGFLYGAGAQKIGEIVGKFGEEG 518 Query: 504 E----LVKKAWRAKHQGVLQLWKDLTEG-FACVVQEGGSISARRVANVPRLVMRRHKRDV 558 + + K + + L + + + GG+ + Sbjct: 519 KKAGAELIKKFLENTPAIASLREQVADALIKEAKWVGGTQQIKWKRK------------- 565 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-- 616 I R++ ++Q+ I + + Sbjct: 566 WIKGLDGRKVHVRSPHA---------------------ALNTLLQSAGALICKKWIVEWD 604 Query: 617 --ATKNGYD--------IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKNPS-WAKGLPL 663 GY + VHDE +V M + W PL Sbjct: 605 KGMRAAGYKHGWDGDYCFMAWVHDEAQLACRTQEIAEDAVRIAQEAMRRVGEHWNFRCPL 664 Query: 664 KAEGYEAKRY 673 EG + Sbjct: 665 DTEGKIGANW 674 >gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Megamonas hypermegale ART12/1] Length = 215 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 77/292 (26%), Gaps = 88/292 (30%) Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A ++ + I AF + +DI+ T A+ F PID+V+ E R K + + Sbjct: 1 MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGII-------- 52 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 G+ A + Sbjct: 53 ------YGIS------------------------------AFGLAKNLHISPKEAGEYID 76 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + + GV ++ E D + RR Sbjct: 77 NYLQECSGVKNFMHEIVEKAHQ--------------------------DGFVTTLFGRRR 110 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGY 622 +K ++ +Q + DI+ M A K Sbjct: 111 YLPAIKSSNFNQRALAERM---------AMNTPIQGTAADIIKIAMNRASEAIKEAKLKS 161 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRY 673 I+L VHDE+V E V + + M S +PL + K + Sbjct: 162 RILLQVHDELVLEVVKEEIEKVSEILTTAMQNTAS--LKVPLIIDINYGKNW 211 >gi|152003765|gb|ABB17229.2| DNA polymerase [Cyanophage S-CBP2] Length = 588 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 86/565 (15%), Positives = 145/565 (25%), Gaps = 139/565 (24%) Query: 1 MSKLFIDIETRS---PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 M L DIET V E + + +DD + + + + Sbjct: 1 MK-LVFDIETDGFLRKLTTVHCVVAKDIETGEV----FKFDD-SGRHQSVSSGLTLLMEA 54 Query: 58 LQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKR-WICTSVLART-----NGL----- 105 + HN F+ ++ P + + T +L+R Sbjct: 55 EEL--------WGHNIIGFDVPAIQEIYPFFQPWESTYYDTLILSRLFFTDMLDRDLRSK 106 Query: 106 ----------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ L K E GK L + Sbjct: 107 PANMPGNLYGRHSLEAWGYRLGV----LKSEYGKQLHG-----------------DWATY 145 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLK 208 EYC++DVEA + K P + E D L+ G+ D+D Sbjct: 146 TPEMLEYCEQDVEANLPIVKLFQPKLEQYADAIKTEHDCALVMTRQEQAGFPFDIDKARA 205 Query: 209 LQELIAQERKKLDEDIVKLTDG--------------------------IIRSSRQTYALR 242 L+ + E + L +++ S + Sbjct: 206 LESKLRSELETLSDEMRATFTFVAGKEFTPARNNATRGYITGCPFTKLTEFSPTSRDHIA 265 Query: 243 MYLFLITGI---DLVDMSEGTLKSILSHSNITQLAKDL--ILNRLASSGSAILKLNTLSE 297 G ++ D + + + ++ T+ AK IL G N+ + Sbjct: 266 WAFQQHRGWEPIEMTDTGKPKIDEEVLNAIGTEEAKKFGRILELQKHVGMLSEGKNSWLQ 325 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V DGR+ + A TGR + +P Sbjct: 326 MVEKDGRIHHSCVLNTA--TGRNAHMRPNLAQVPS------------------------- 358 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R G V AD +G+E R LA A +G Sbjct: 359 ---GHEFRELFTPGEGYVQVGADASGLELRCLAHY-------LARFDGGKFGKVLLEGDI 408 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWE 476 +T + + R GK + L Y GG G + + K Sbjct: 409 HTDLANIYGTDRKTGKTVTYCLIYGGGDTKL---GLSAGEPKKSAASRGKKIRQAIMKDL 465 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGT 501 + + + + V + G Sbjct: 466 DGFAQLITAVQERAQSGVITGIDGR 490 >gi|289674484|ref|ZP_06495374.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 141 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 44/173 (25%) Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + A++ GVL + A + RR Sbjct: 2 DRYFARYPGVLNYMERTRAQAAEQG--------------------------FVETIFGRR 35 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NG 621 L D+ L R +Q + DI+ + M Sbjct: 36 LYLPDINAKNQSLR---KGAERMAINAP------MQGTAADIIKKAMVAVNGWLDESGLD 86 Query: 622 YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++L VHDE+V E + V + M+ A +PL E + Sbjct: 87 ARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAAQLA--VPLLVEVGVGNNW 137 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 7/73 (9%), Positives = 18/73 (24%), Gaps = 9/73 (12%) Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + F + ++ + Q E + + G L + + L +G Sbjct: 1 ADRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYL---------PDINAKNQSLRKG 51 Query: 528 FACVVQEGGSISA 540 + Sbjct: 52 AERMAINAPMQGT 64 >gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 727 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 99/310 (31%), Gaps = 55/310 (17%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLP---SSLKNACLA---LNFSEHLTKMEEGKALIA 133 +++GI + T + SL+ A L+F E ++ +G + Sbjct: 426 LLESVGITL-PTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGT--LD 482 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + D + + L + L+ E + + Sbjct: 483 LDDMDGSSNTQADELQRHAAIVDMLA---NVLADLLDQRAQFGLLKSI--ELPVSKVLYG 537 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ++D+ + ++++ A + ++ ++I + G + + L+ LF G+ Sbjct: 538 MEHAGAQVDMIRLTEMRDQFAADARQA-QEIAWESAGERVNLQSPKQLQKILFEDMGLKP 596 Query: 254 VDMSEG----TLKSILSHSNITQLAKD--------LILNRLASSGSAILKLNTLSEAVSS 301 ++ T + L L D L+ +R + I + TL +A + Sbjct: 597 TKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI--VQTLIDATNP 654 Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T + A TGR S QN+P A Sbjct: 655 RDGRIHTTFEQTVA-ATGRLSSVDPNLQNIP------------------------NRNAA 689 Query: 361 SDCVRSCIIA 370 +RS + Sbjct: 690 GREIRSAFVP 699 >gi|221057828|ref|XP_002261422.1| DNA polymerase I [Plasmodium knowlesi strain H] gi|194247427|emb|CAQ40827.1| DNA polymerase I, putative [Plasmodium knowlesi strain H] Length = 1245 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 48/375 (12%), Positives = 114/375 (30%), Gaps = 52/375 (13%) Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + S + L + + ++ GAS TGR S QN+ Sbjct: 804 IINNVKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQVGAS-TGRLSCEHPNLQNIHS 862 Query: 333 QERSEEILT-QTIQALNRGETIADPLGLASDCVRSC------IIASNGKKLVVADLAGIE 385 + R L + ++ G+ + +C S+G+ L+ D +E Sbjct: 863 RFRCAISLKGEDSSSVEVGKDKLTVAEDPDREILTCEMSPHESTPSDGENLITFDYKQME 922 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 V+A+++ + +K +G+ T T +V+ E R + K + + Y Sbjct: 923 LFVMAYLSFDRQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMTKTVIYGILYGQTE 979 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 L + + + ++ F+ + + L+G + Sbjct: 980 N-----GLARSLLISEGMASNLISNFFQVFPNVYRFMEMQKILLKHMNRVYTLVGRKR-I 1033 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 ++ + K++ + + + A +++ ++ + + + Sbjct: 1034 IEPTVKNKYR--ISMNTPIQGCAADIMK--FALLSCLSIMTHGRGRQVVSNFGSV----- 1084 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---- 621 K D + T N+ + +N Sbjct: 1085 ---HEPHNKYDVHSMGHWTQSARLLEI------NNV---SAA--------LLEENKPFLE 1124 Query: 622 -YDIVLTVHDEIVSE 635 ++L VHDE++ E Sbjct: 1125 ATKLILQVHDELLFE 1139 >gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM 7454] gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM 7454] Length = 210 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 80/284 (28%), Gaps = 88/284 (30%) Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 +AF++ DI+ T ++ F+TPID+V+K QR+ K + + Y Sbjct: 3 KKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYG-----ISDYGLSQ 57 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 L++ + + + + Sbjct: 58 NLNIP---------------------------------------RKRAKEYIENYLNTYP 78 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + KD+ + + +RR ++ Sbjct: 79 QIKKYMKDIVKKAKEEG--------------------------FVNTIFNRRRYVPEINS 112 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVH 629 + + ++ +Q + DI+ M N+ +N IVL +H Sbjct: 113 KNFNVRSFGERV---------ALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIH 163 Query: 630 DEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEGYEAKR 672 DEI+ E + S M + +PL + Sbjct: 164 DEIIIEASKKDLTKAKEILKSSMEEAVK--LKVPLLVDIDSGDS 205 >gi|18640489|ref|NP_570330.1| DNA polymerase [Synechococcus phage P60] gi|18478719|gb|AAL73268.1| DNA polymerase [Synechococcus phage P60] Length = 587 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 83/561 (14%), Positives = 141/561 (25%), Gaps = 133/561 (23%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M L DIET P + A D + +D T + L+ Sbjct: 1 MK-LAFDIETDGLIPDLTIIHCIVARD---------IDTDEEFRFDGTGDYPSIKEGLEL 50 Query: 61 LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-----NGL--------- 105 L + HN ++ +K P T +L+R Sbjct: 51 L-SKADELWGHNIVNYDYPAIQKLHPDWTPPSCTRDTLILSRLFFTDLLDRDFRSRPALM 109 Query: 106 ------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 SL+ L K E GK+L + Sbjct: 110 PGNLYGRHSLEAWGHRLGH----HKSEFGKSLEG-----------------DWSTYSPEM 148 Query: 160 GEYCKRDVEATRELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 EYC RDVE + L K +P D E ++ + G+ D+ L+ Sbjct: 149 LEYCARDVEVSVALAKTFVPKIPEYQWSVDTEHEIARIMSWQEQMGFPFDVRAAQALEGK 208 Query: 213 IAQERKKLDEDIVKLTDGI--------------------------IRSSRQTYALRMYLF 246 + E L +D+ + + + + + Sbjct: 209 LRLELDTLSDDMRETFHFVDGGVMTPKRSNKVRHYFENAPFCKLREFNPTSRHHIAWAFE 268 Query: 247 LITGIDLVDMS-----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 G + + + + + + + LA IL G N + Sbjct: 269 HHRGWEPKERTAGGQPKIDDEILREINTKESLAFARILELQKHLGQLSEGKNAWLKLERK 328 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GRL + + TGR + +P Sbjct: 329 -GRLHHSCVLN--TNTGRQAHMRPNLAQVPSAHEY------------------------- 360 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 RS S+ V +D +G+E R L + +G +T + Sbjct: 361 ---RSLFKPSDNHLQVGSDASGLELRCLGHY-------LSRYDGGKFAEEVVNGDIHTAL 410 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAES 480 ++ R GK + L Y GG G S+ + + Sbjct: 411 AEIYGTDRKSGKGVTYCLIYGGGNHKL---GLTAGASKSSASRKGQEIRGKIMQGLSGFA 467 Query: 481 HHLWMQDQYPEFAVKDKLIGT 501 + + V L G Sbjct: 468 DLNAAIQERAKSGVLKGLDGR 488 >gi|322815448|gb|EFZ24101.1| DNA polymerase theta (polymerase domain only), putative [Trypanosoma cruzi] Length = 881 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 68/573 (11%), Positives = 145/573 (25%), Gaps = 145/573 (25%) Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 A+ AT +F L + E + L + ++ G ++ +++ + + Sbjct: 376 AYYEAYLQSVESSGATGNVFMSLFTVCSLETRVSFLCEVMSYHGMFVEKNMLDSMVADLE 435 Query: 215 QERKKLDED----IVKLTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILS 266 Q+ K L E + + S L G ++G ++ + Sbjct: 436 QQIKALIEKGNVALQAMATASNESIDMETVDAWNLIKTLQSQFGGPW-TFAKGNVEEQMQ 494 Query: 267 HSNITQLAKD------------LILNRLASSGSA---ILKLNTL---------------- 295 K + R S K ++ Sbjct: 495 QLGAYLDEKQSCADSNVARIWLALHERREFKRSLMEGFTKGASMHARLIAIPEEMASTEG 554 Query: 296 -----SEAVSSDGRL----RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 V + RL + A+ + + Q + + + Sbjct: 555 GGHSNPHHVEAQYRLFFSVHPKWSVHHATTSRLFCSR-PCLQTVAKNPP-------ISRT 606 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R G LV D IE RV+A ++G+ ++ +G Sbjct: 607 APSSSPPVTIFSNPKWTLRHLYGPPPGCTLVSFDFNQIELRVMAHLSGDPLLVQQLRDGS 666 Query: 407 DIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+ + P V+ R KV+ L Y G + ++ F++ Sbjct: 667 DVLAEMALRVMQLPRLTDVTPYLRQGTKVVVYGLLYGMGPESLDLRLRQLHKEITPFAEQ 726 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + +++ + V K Sbjct: 727 PPLS---------------------------------ARQFLRSFNQCYPAVQGFLKSTR 753 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 E + + ++ ++ V + L Sbjct: 754 ---LRAFHEKRCATLNGLRDLSGEPDGNRRKQVAVAL----------------------- 787 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----------IVLTVHDEIVS 634 +Q + IL M + ++ +VL+VHDE+V Sbjct: 788 ---------------AIQGGAAVILHHAMVEVHEKRHELVPFLPAAAAALVLSVHDELVY 832 Query: 635 ETPDTPYFSVG-TLCSLMT-KNPSWAKGLPLKA 665 PD V + ++ + + + +PL Sbjct: 833 AVPDGAVSFVAPKIKQILEQQAAALSLSVPLPV 865 >gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2] gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2] Length = 625 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 85/699 (12%), Positives = 166/699 (23%), Gaps = 194/699 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQSAMP--SDLLQ 59 + DIET Q I AW D V + P + ++ Sbjct: 37 VATDIETPGLL-----------RQFDINCVTAAWRHGDGRVHSV-LLDPDRTPHHDEAVR 84 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPS---KRWICTSVLARTNGLP----SSLKNA 112 + D + + N +F+ G+ P ++++ T + AR SL Sbjct: 85 EIYDSAEVIILQNGVFDLPALL-HSGLITPEQIREKFLDTLLPARMIDTSSPMARSLTML 143 Query: 113 CLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L ++ G L + Y+ + + D T Sbjct: 144 VKRHLGVE----ELTGGIELAFKAAGYKRQQDGYEGMDIDSPI----YRLGAMADTVMTL 195 Query: 172 ELFKRLIP---------------LSDGERDLWLLDQTIND---------RGYRIDLDLVL 207 L+ L D +++++ I + +G +D + Sbjct: 196 ALWPVLYEAAIDQQLDHPFQSRGCVDRAEAQYVVERMITELRIVGTRVAKGVNVDRGALE 255 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSIL 265 + + + +R++ + + + + YL + + G LK+ Sbjct: 256 RYADSVEDDRRRATATLAAVGLEGGKGKES--KIIEYLASVGHLPADWPRTPSGKLKATK 313 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA L + GR + GA+ TGR S Sbjct: 314 DLMEGLGDPIATAQRTLAHMDQLTGYLEKVEAQSQVTGRCHPQISVAGAAATGRMSISSP 373 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 Q R+ + A G+++ D + IE Sbjct: 374 PLQQFSGPA------------------------------RAILTADEGQRMWSVDWSQIE 403 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 + E + GA Sbjct: 404 PVT---------------------------------------MALLAGDSEFLAPFAAGA 424 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 +++ + G++ + + A + Sbjct: 425 DLYEPIMRAAGIE--------------RKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQ 470 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 +++ A + + IV Sbjct: 471 LRRQMFAAMPESSKFMSRVQ--------------------------TLGDTHGKIVTAGK 504 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623 R L G K T I Q + DIL E + + G Sbjct: 505 RVLDVDSGF-------------------GYKATNYICQGTALDILTETIIELDRRGLGDS 545 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662 ++ +HDEI+ P + +M P + + P Sbjct: 546 MLWWMHDEILVSGPP---EVAREVQEVMEIVPDFMRTWP 581 >gi|289806032|ref|ZP_06536661.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 142 Score = 107 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 7/144 (4%) Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---- 258 ++ K E I +L++ + G + T L+ LF GI + + Sbjct: 1 PAVLHKHSEEITLRLAELEKKAHDIA-GEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAP 59 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRT 317 T + +L + +IL + + L ++ GR+ + + T Sbjct: 60 STSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TAT 118 Query: 318 GRWSGCVFQPQNLPRQERSEEILT 341 GR S QN+P + + Sbjct: 119 GRLSSTDPNLQNIPVRNEEGRRIR 142 >gi|255928280|gb|ACU41897.1| gp60 [Mycobacterium phage Puhltonio] Length = 619 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 97/718 (13%), Positives = 178/718 (24%), Gaps = 197/718 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58 L DIET I AW D V D + + Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108 + L + HN+ F+ G+ ++ KR + T VLAR P Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 L L SE ME G +G P A L Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216 Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 E R L + D + + + + G +D + + + Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 +A E+ D+ + +G L++ + Sbjct: 277 LNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLE 336 Query: 270 ITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 L +L+ + L +S + GR + GAS TGR S + Sbjct: 337 YLAEINPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQVATLGASATGRMSYGSPEL 396 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 Q P+ R I+ +G L D + IE Sbjct: 397 QQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIEPV 425 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 + + ++ Y+ G + Sbjct: 426 T---------------------------------------MANMARDIDFLAAYEAGEDL 446 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + G+D + S+ + + ++ + +K Sbjct: 447 YGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ--------------IK 492 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + A + + + E A + + + + Sbjct: 493 RQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF----------------- 535 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIV 625 K VQ + D+L + + G ++ Sbjct: 536 ----------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDELY 567 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675 L +HDE+V TP + +M+ P WA+ P+ +A+ ++ K Sbjct: 568 LAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618 >gi|256831724|ref|YP_003160451.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603] gi|256685255|gb|ACV08148.1| DNA-directed DNA polymerase [Jonesia denitrificans DSM 20603] Length = 600 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 79/498 (15%), Positives = 126/498 (25%), Gaps = 148/498 (29%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE----------RKKLDEDI 224 +RL L E L+ + + G D D L E + + +++ Sbjct: 180 QRLSFLMALESAGALIAREMYAVGVPWDRDHHEALLREQLGERPAVGVRPAALEAVAQEL 239 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L D + L L GI + S+ L+ A + Sbjct: 240 RRLLDAPELNPDSPKDLLRALNSA-GIPVTTTSKWALRE------HRHPALAPLERYKHL 292 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + SDGR R G TGRW LPR Sbjct: 293 ARLWTAHGWAWLDEWVSDGRYRPVY-TPGGVVTGRWGADGGGALQLPR------------ 339 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R A +G V+AD + +E RVLA ++G+ +A Sbjct: 340 ------------------AIRGAARAGDGFTFVIADASQLEPRVLAAMSGDAAMAEAGRG 381 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 + D R K L Y G+ Q Q Sbjct: 382 ---------GDMYQRIADAGVVPSREHAKYGMLGAMY----------GGTTGVSAQVLPQ 422 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 +R + + Sbjct: 423 ---------------------------------------------FRQAFPTAMA----M 433 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 E A V + GG ++ P V+ + RRL Sbjct: 434 VESAARVGERGGQVTTWLGRTSPPGVVSHPDESDDADVARERRL---------------- 477 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------------IVLTVHDEI 632 R R+YG IVQ + + M + +V +HDE+ Sbjct: 478 ----RSRSYGRFTRNFIVQGSAAEWAMAWMVEIRLRLHQLSLGDPTLSAPSLVFFLHDEV 533 Query: 633 VSETPDTPYFSVGTLCSL 650 + TP +V + + Sbjct: 534 LIHTPVEWAETVAEVVRV 551 >gi|38638464|ref|NP_943839.1| gp61 [Mycobacterium phage PG1] gi|109391908|ref|YP_655158.1| gp62 [Mycobacterium phage Orion] gi|206600352|ref|YP_002241372.1| gp62 [Mycobacterium phage Chah] gi|33334079|gb|AAQ12138.1| gp61 [Mycobacterium phage PG1] gi|88910450|gb|ABD58378.1| gp62 [Mycobacterium phage Orion] gi|206287440|gb|ACI12782.1| gp62 [Mycobacterium phage Chah] gi|282721440|gb|ADA83888.1| gp62 [Mycobacterium phage Fang] gi|282721543|gb|ADA83990.1| gp61 [Mycobacterium phage Scoot17C] Length = 619 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 97/718 (13%), Positives = 178/718 (24%), Gaps = 197/718 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58 L DIET I AW D V D + + Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108 + L + HN+ F+ G+ ++ KR + T VLAR P Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 L L SE ME G +G P A L Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216 Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 E R L + D + + + + G +D + + + Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 +A E+ D+ + +G L++ + Sbjct: 277 LNQVADEQAIYTADLAAHGLDGGTGKGAKLVQYLADLGELPQPWPRTPKGALRATKADLE 336 Query: 270 ITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 L +L+ + L +S + GR + GAS TGR S + Sbjct: 337 YLAEINPLAKAQLSLANIEKTLGYLTKVSTQAAVTGRCHPQVATLGASATGRMSYGSPEL 396 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 Q P+ R I+ +G L D + IE Sbjct: 397 QQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIEPV 425 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 + + ++ Y+ G + Sbjct: 426 T---------------------------------------MANMARDIDFLAAYEAGEDL 446 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + G+D + S+ + + ++ + +K Sbjct: 447 YGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ--------------IK 492 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + A + + + E A + + + + Sbjct: 493 RQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF----------------- 535 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--DIV 625 K VQ + D+L + + G ++ Sbjct: 536 ----------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDELY 567 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675 L +HDE+V TP + +M+ P WA+ P+ +A+ ++ K Sbjct: 568 LAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618 >gi|302845441|ref|XP_002954259.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f. nagariensis] gi|300260464|gb|EFJ44683.1| hypothetical protein VOLCADRAFT_94989 [Volvox carteri f. nagariensis] Length = 689 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 46/375 (12%), Positives = 96/375 (25%), Gaps = 27/375 (7%) Query: 172 ELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L P E + L + G +D + + + Q + L L G Sbjct: 268 RVQPWLRPQAVQVEMQVCWLLAQMEAVGMAVDTAGLGRQAAAVRQRMEALTSAASSLLGG 327 Query: 231 IIRSSRQTYALRMYLFLITGIDLV--DMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L + L+ + + ++ +A Sbjct: 328 RTINLGSSAQLAVVLYDELELPPPVPQGQRDAAGVSRTAVPGVTERAKQVVGTRMDGTAA 387 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 +L+ GR ++ R +W+ ++ + Sbjct: 388 GAELDDGGGGGGGGGRRGPGGRWNRLRRGFQWAVTKYEV----VVPLGDTTEGSPCGGGG 443 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 R+ +A G+ LV AD + IE R+LA ++G+ + G + Sbjct: 444 EEGAGVLRGDRLVVVARNAFVAPPGRLLVAADYSQIELRLLAHMSGDLRLQELLKRGVEQ 503 Query: 409 YVTTYAKAF---------------NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 T VS R K + + Y A+ + Sbjct: 504 SEGRGGGGGGTDAFRHIAASWLRPGTAPADVSSRDREQVKRVVYGIIYGMTAQGLAQQLA 563 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK-LIGTACELVKKAWRA 512 G+ L+ TS + ++ L+G + Sbjct: 564 EYGVGLE--EATALRTSFLRHFAGVQAFITSSLYHARRHGYITTGLLGRRR--PIAGVNS 619 Query: 513 KHQGVLQLWKDLTEG 527 V+ + + Sbjct: 620 SDPRVVNSIVQIHDE 634 >gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus] Length = 482 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 100/299 (33%), Gaps = 27/299 (9%) Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + ++ G A R ++AS G V AD + +E R++A ++G+ +K Sbjct: 192 AEAMKDGGLGARCPWFAKEAMIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLK 251 Query: 401 AFANGEDIYVTTYAKA--FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 FA+G D++ T A + +++E+R K++ + Y A L Sbjct: 252 VFADGGDVFRTIAAALKGRGKKAEDITEEERRQTKIVVYGVLYGQSADALV-----PQLR 306 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 L + + + + + +++ E + L+G R + Sbjct: 307 LSRPEAFKIRQTVLKTFPKLTEFLKKVKEDCKECGYVETLLGR---------RRYLPQIN 357 Query: 519 QLWKDLTEGFACVVQEGGSIS--ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 K + A + V R +R + P+ + + Sbjct: 358 STDKAERSRAERQAANTTTQGSAADLLKLAATNVAARLERCEWMSRPAGKPICTPPPNA- 416 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + T++S L RD + + +VL++HDE++ E Sbjct: 417 -AAGGTSSSALASGTADATVPCRFP-----RDGGRSQLAR--RPACRLVLSIHDELLYE 467 >gi|255928521|gb|ACU42136.1| gp59 [Mycobacterium phage UncleHowie] Length = 619 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 101/720 (14%), Positives = 186/720 (25%), Gaps = 201/720 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58 L DIET I AW D V D + + Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108 + L + HN+ F+ G+ ++ KR + T VLAR P Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 L L SE ME G +G P A L Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216 Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 E R L + D + + + + G +D + + + Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSH 267 +A E+ D+ G+ + + L YL + +G L++ + Sbjct: 277 LNQVADEQAIYTADLAAH--GLDGGTGKGAKLVQYLAERGELPQPWPRTPKGALRATKAD 334 Query: 268 SNITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 L +L+ + L+ +S + GR + GAS TGR S Sbjct: 335 LEALATVNPLAKAQLSLANIEKTLGYLSKVSTQAAVTGRCHPQVATLGASATGRMSYGSP 394 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 + Q P+ R I+ +G L D + IE Sbjct: 395 ELQQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIE 423 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 + + ++ Y+ G Sbjct: 424 PVT---------------------------------------MANMARDIDFLAAYEAGE 444 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 ++ + G+D + S+ + + ++ + Sbjct: 445 DLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ-------------- 490 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 +K+ A + + + E A + + + + Sbjct: 491 IKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF--------------- 535 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623 K VQ + D+L + + G + Sbjct: 536 ------------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDE 565 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675 + L +HDE+V TP + +M+ P WA+ P+ +A+ ++ K Sbjct: 566 LYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618 >gi|255927583|gb|ACU41205.1| gp59 [Mycobacterium phage Colbert] Length = 619 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 101/720 (14%), Positives = 186/720 (25%), Gaps = 201/720 (27%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLW--DRTEQSAMPSDLL 58 L DIET I AW D V D + + Sbjct: 52 LATDIETPGLDN-----------SFTINCVTMAWAQPDSGRVHSILLDPRRDEQHAALVA 100 Query: 59 Q--YLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL---PSS-- 108 + L + HN+ F+ G+ ++ KR + T VLAR P Sbjct: 101 EMYALAGP---VILHNAPFDIPPLF-HAGLMTGEVIKKRIVDTVVLARFALPEPPPYGQA 156 Query: 109 --LKNAC-LALNFSEHLTKME-----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 L L SE ME G +G P A L Sbjct: 157 KTLTALAIRYLGLSEFKGGMERAFKAAGYKTQQAGYEGMDIDSPIYRQGAMADTVATLAL 216 Query: 161 EYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 E R L + D + + + + G +D + + + Sbjct: 217 EPVMRRRAIEWTLDHPFEVYGATSVAEAEAILDTQEIVHRMMLWRSALGINVDREYLDRY 276 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEGTLKSILSH 267 +A E+ D+ G+ + + L YL + +G L++ + Sbjct: 277 LNQVADEQAIYTADLAAH--GLDGGTGKGAKLVQYLAERGELPQPWPRTPKGALRATKAD 334 Query: 268 SNITQLAKDLILNRLASSGSAIL--KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 L +L+ + L+ +S + GR + GAS TGR S Sbjct: 335 LEALATVNPLAKAQLSLANIEKTLGYLSKVSTQAAVTGRCHPQVATLGASATGRMSYGSP 394 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 + Q P+ R I+ +G L D + IE Sbjct: 395 ELQQFPKDARP-------------------------------ILCDDGDGLTSIDWSQIE 423 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 + + ++ Y+ G Sbjct: 424 PVT---------------------------------------MANMARDIDFLAAYEAGE 444 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 ++ + G+D + S+ + + ++ + Sbjct: 445 DLYGPIMLAAGIDRPTSKVVLLSSMYGSGIAKLAALIGHTEESTAQ-------------- 490 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 +K+ A + + + E A + + + + Sbjct: 491 IKRQMFAAMKRSAKWMVKVEEVAAQFGRVITAGGRILPVDEGGIF--------------- 535 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY--D 623 K VQ + D+L + + G + Sbjct: 536 ------------------------------KAVNYTVQGSAYDVLANTIVEMYRRGMTDE 565 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS----WAKGLPL----KAEGYEAKRYRK 675 + L +HDE+V TP + +M+ P WA+ P+ +A+ ++ K Sbjct: 566 LYLAMHDEVVVSTP-----VAAEVQEIMSTPPEFLIRWAERTPVLRTDRAD--MGSQWLK 618 >gi|150404387|gb|ABR68507.1| DNA polymerase I [Lactobacillus casei] gi|150404391|gb|ABR68509.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|150404419|gb|ABR68523.1| DNA polymerase I [Lactobacillus casei] gi|150404429|gb|ABR68528.1| DNA polymerase I [Lactobacillus casei] gi|225349752|gb|ACN87801.1| PolA [Lactobacillus casei] gi|225349762|gb|ACN87806.1| PolA [Lactobacillus casei] gi|225349764|gb|ACN87807.1| PolA [Lactobacillus casei] gi|225349768|gb|ACN87809.1| PolA [Lactobacillus casei] gi|225349770|gb|ACN87810.1| PolA [Lactobacillus casei] gi|225349772|gb|ACN87811.1| PolA [Lactobacillus casei] Length = 243 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|77918409|ref|YP_356224.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544492|gb|ABA88054.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelobacter carbinolicus DSM 2380] Length = 593 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 92/680 (13%), Positives = 173/680 (25%), Gaps = 181/680 (26%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D E S P + + L + + V++W + + + Sbjct: 10 KVILLDSE-FSQPPGERPTPHCLVAKE---LFS----GKTVRVW-IEKGEQPLAA--PFP 58 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D+ + VA+ + E F + LG +P A + Sbjct: 59 TDKNTLFVAYLASAEMTCF-QALGWKLP----------AYVID-------LYAEFCLLTN 100 Query: 122 LTKMEEGKALIA---RFCKGSIDSPPYDCTRA-------NHVQAWQLFGEYCKRDVEATR 171 + GK L+ F + +D+ R +YC+RDV A Sbjct: 101 GFFLPRGKGLLGALAYFGEEILDAVEKKDMRELAQRGGPYTEDEKTDLLDYCQRDVLALE 160 Query: 172 ELFKRLIPLSDGER-----DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L+K ++P DG+R + I G ID + L+E + L E++ Sbjct: 161 RLWKHMVPHLDGDRSLLRGEYMKAVAKIEMTGIPIDTLALADLRENWEVIKTSLIEELGA 220 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLIL 279 +T YL GI T K + + K+L Sbjct: 221 PYGVYKNGKFKTDLFVQYLKNK-GIPWPLTPTRKPKTDADTFKEMAKCYPELKPLKELQQ 279 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + V +DGR R +G+ N P + Sbjct: 280 LLGKLKLN--------KLQVGTDGRNRYLSGVFGSKTGR----------NQPSNSKC--- 318 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + +R + G L D E + ++G++ Sbjct: 319 -----------------IFGLPSWMRKLVRPGPGNGLAYLDYEQQEFGIAGALSGDEAMR 361 Query: 400 KAF--ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +A+ + + A + + R+ K L + Y G Sbjct: 362 QAYISGDPYLAFAIQAGAAPRGATKESHGDIRSRFKATALGVQYGMGQDRL--------- 412 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+ + + + R + Sbjct: 413 -----------------------------------AMNLNISKGEAKALLDLHRKTYARF 437 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 Q +D+ GG + + Sbjct: 438 WQWQQDIENKALIEGSIGGVLGWK------------------------------------ 461 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + + R L +QA ++L + + IV VHD +V E P Sbjct: 462 --MRITSKTKDRT------LANFPMQANGAEMLRLAVCLCAERNIKIVAMVHDALVIEAP 513 Query: 638 DTPYFSVGTL-CSLMTKNPS 656 + ++ M + Sbjct: 514 IAGLEAAKSIAIQAMKEASE 533 >gi|150404371|gb|ABR68499.1| DNA polymerase I [Lactobacillus casei] gi|150404379|gb|ABR68503.1| DNA polymerase I [Lactobacillus casei] gi|225349754|gb|ACN87802.1| PolA [Lactobacillus casei] Length = 243 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|150404373|gb|ABR68500.1| DNA polymerase I [Lactobacillus casei] gi|150404375|gb|ABR68501.1| DNA polymerase I [Lactobacillus casei] gi|150404377|gb|ABR68502.1| DNA polymerase I [Lactobacillus casei] gi|150404381|gb|ABR68504.1| DNA polymerase I [Lactobacillus casei] gi|150404417|gb|ABR68522.1| DNA polymerase I [Lactobacillus casei] Length = 243 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSN------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|170781985|ref|YP_001710317.1| putative DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156553|emb|CAQ01704.1| putative DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 592 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 90/581 (15%), Positives = 140/581 (24%), Gaps = 140/581 (24%) Query: 93 WICTSVLARTNGLPSSLKNACLALNFSE---HLTKMEEGKALIARFCKGSIDSPPYDCTR 149 W T+V ART C L S L+ AL + P + Sbjct: 88 WDDTAVWARTLIAAGVRVARCHDLRLSHAILRLSTQTADSALARLPAGPWDAAAPAEREP 147 Query: 150 ANHVQAWQLFGEYCKRDVE---ATRELF----------KRLIPLSDGERDLWLLDQTIND 196 + + R + A L RL L E L+ ++ Sbjct: 148 SASATLFDDLDASDGRSPDELVAELRLQLEAIAGSAESGRLRLLLAAESAGALVAAEMSA 207 Query: 197 RGYRIDLDLVLKLQELIAQ----------ERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 G D + L + +L I ++ + + L Sbjct: 208 DGLPWDTAVHDALLVDLLGGRPAHSGAPPALLRLAARIREILAAPDLNVDSPPDVLRALR 267 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 G+D + L+ I +L S T E DGR Sbjct: 268 -RAGVDASSTRQWELQEI------DHPVIAPLLEHKKLSRLLTANGWTWMETWIRDGRFH 320 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G TGRW+ LPR +RS Sbjct: 321 PEYVPGGV-VTGRWAASGGGALQLPR------------------------------QIRS 349 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + A G +LVVAD A +E RVLA ++ + A + A Sbjct: 350 AVRADPGWRLVVADAAQLEPRVLAALSEDRAMADAGRGTDLYQGLVDAGVV--------- 400 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + RA KV L Y + + +A + Sbjct: 401 DTRAHAKVAMLGAMYGATSG----------------ESGRLMPRLVRAYPRATGYVERAA 444 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 V +G + AW V Q+ + + + S + Sbjct: 445 RAGESGGVVSTRLGRSSPPPGDAWV----DVQQIGRAGEASPSDAARARTSARDQGRFTR 500 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 +V L RR ++ Sbjct: 501 NFVVQGSAAEWALCWLAGLRRR------------------------------------LA 524 Query: 607 RDILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645 + G +V +HDE++ TPD V Sbjct: 525 A---------LERPGSRPHLVFFLHDEVMVHTPDDRVDEVR 556 >gi|148727216|ref|YP_001285708.1| p39 [Xanthomonas phage Xop411] gi|116583516|gb|ABK00186.1| p39 [Xanthomonas phage Xop411] Length = 793 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 54/420 (12%), Positives = 109/420 (25%), Gaps = 84/420 (20%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---------TLSEAVSSDGRL 305 E +++ S + + + + + V DG + Sbjct: 382 KTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGKDGIV 441 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 L + TGR S + QNLP+ ++S V+ Sbjct: 442 HHQL-QMVNTVTGRLSSALPNLQNLPKGDKS--------------------------EVK 474 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + ++ G +V +D +E V ++G+ I G D++ A+ D V Sbjct: 475 TLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYV 534 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 K + + Y ++ + S Sbjct: 535 ----FERAKDKKH-IEY-------------------------IVWNSKRSKAKGFSFQRA 564 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 A + + + + + G+ + K + + S + Sbjct: 565 YGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNL----VPSKMYIT 620 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + + P +R + QL T VQ Sbjct: 621 SSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSST---TTKNYPVQG 677 Query: 605 ISRDILCEGMKNA----TKNG-----YDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654 + + M G IV TVHD + P+ S+ L + M + Sbjct: 678 TGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACMEEA 737 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 26/263 (9%), Positives = 59/263 (22%), Gaps = 26/263 (9%) Query: 4 LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L D+ET K + +W + +P D + + Sbjct: 19 LAWDLETGTKTLHKRKASPFDVQNDIWAVGFGRSWQESKGYH-KAVHG--IPEDWFRVIL 75 Query: 63 DETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNGLP------SSL 109 + + V N F+ + + + + + + +S+ Sbjct: 76 NNCRVLVGFNIKFDLLYALRDKANHTAWMQWVVEGGKVWDCQLAEYLLQGMAQEWQIASM 135 Query: 110 KNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRD 166 + S K K+ D G Sbjct: 136 DDVAPLYGGSC---KDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNTANIFK 192 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + + I L G +D+ ++++ + + L E + K Sbjct: 193 GQLKLAKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLSEQVNK 252 Query: 227 LTDGIIR---SSRQTYALRMYLF 246 + + LF Sbjct: 253 GLPEDLPFEFNWASPKQRSALLF 275 >gi|150404365|gb|ABR68496.1| DNA polymerase I [Lactobacillus casei] gi|150404409|gb|ABR68518.1| DNA polymerase I [Lactobacillus casei] gi|150404423|gb|ABR68525.1| DNA polymerase I [Lactobacillus casei] gi|150404433|gb|ABR68530.1| DNA polymerase I [Lactobacillus casei] gi|150404437|gb|ABR68532.1| DNA polymerase I [Lactobacillus casei] gi|225349774|gb|ACN87812.1| PolA [Lactobacillus casei] Length = 243 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSN------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|150404363|gb|ABR68495.1| DNA polymerase I [Lactobacillus casei] gi|150404397|gb|ABR68512.1| DNA polymerase I [Lactobacillus casei] gi|150404399|gb|ABR68513.1| DNA polymerase I [Lactobacillus casei] gi|150404401|gb|ABR68514.1| DNA polymerase I [Lactobacillus casei] gi|150404407|gb|ABR68517.1| DNA polymerase I [Lactobacillus casei] gi|150404413|gb|ABR68520.1| DNA polymerase I [Lactobacillus casei] gi|150404415|gb|ABR68521.1| DNA polymerase I [Lactobacillus casei] gi|150404439|gb|ABR68533.1| DNA polymerase I [Lactobacillus casei] Length = 243 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 69/251 (27%), Gaps = 34/251 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNA---CLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDMPRDEDIYGKGAKRQVPEDDKLFGQFARKSN------ALFALRPD 113 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + ++ L +D E L + + +G ++ + + +Q K L+E I Sbjct: 114 LTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEEKI 171 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + L LF + ++ ++ T +L+ IL+ Sbjct: 172 YAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDILDY 230 Query: 282 LASSGSAILKL 292 + + Sbjct: 231 RGWAKLNSTYV 241 >gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] Length = 551 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 77/505 (15%), Positives = 134/505 (26%), Gaps = 138/505 (27%) Query: 157 QLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA- 214 L Y + + + R+ L+ E L+ ++ G + L + Sbjct: 135 ALLRVYADQLRRHQQAEYPERMRLLTASESSGMLIAAEMDRAGLPWSAETHRALLTELLG 194 Query: 215 ---------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + +L E + +R L+ F G L L+ Sbjct: 195 ERYAGGGEPRRLTELAEQVSAAFGRRVRPDLPADVLKA--FKQAGYQLTSTRRWELQ--- 249 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 I A + ++ + DGR R G + +GRW Sbjct: 250 ---TIDHPAVEPLIEYKKLYRIYTANGWSWLNDWVHDGRFRPGFVP-GGTVSGRWITNGG 305 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 +P+ +R ++A G +LVVAD + +E Sbjct: 306 GGLQIPK------------------------------VIRRAVVADPGWRLVVADASQLE 335 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA I+ + ++ N D+Y DK RA+ K+ L Y Sbjct: 336 PRVLAAISRDPGLMEVAGNAADLYKAVS--------DKAFSGDRAMAKLAVLGAIY---- 383 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 G L+ + Sbjct: 384 ------GQTSGDGLKNLAAL---------------------------------------- 397 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 R + + D A +EG + P PS Sbjct: 398 -----RKRFPKAVAYVDD----AARAGEEGRLVRTWLGRTCP---------------PSG 433 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----G 621 +L + ++G + S+ R R G +VQ + D M ++ Sbjct: 434 SQLDSAQLEGPPADEPQVDSRRARAR--GRFTRNFVVQGSAADWALLMMAALRQSIATYK 491 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGT 646 ++V HDE++ P V Sbjct: 492 AELVFFQHDEVIVHCPAEEADQVAA 516 >gi|322492142|emb|CBZ27416.1| DNA polymerase theta (polymerase domain only),putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1171 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 52/432 (12%), Positives = 103/432 (23%), Gaps = 121/432 (28%) Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI------- 339 ++ +++ + ++ D L + TGR + QN+P+Q Sbjct: 789 ASTAQVSRVCYSMHPDWVLHN-------TSTGRIFSSLPNVQNVPKQPPRTAFPIHTLSA 841 Query: 340 --------------------------------LTQTIQALNRGETIADPLGLASDCVRSC 367 + +R Sbjct: 842 TPSRNSGGDESLRHYSYVDPPTEEDVARWLALAEAALVDQASSAQFPLFPENPQWTLRHL 901 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426 A G L D +E R+LA ++G+ + + D+ A P ID V Sbjct: 902 YCAPPGCLLASFDFNQLELRLLAHLSGDAALQEHLSANVDVLALVTASVLRLPSIDHVRP 961 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 +QR KV+ L Y G + + Q Sbjct: 962 QQRQAVKVIVYGLLYGMGPESMDVRIKKINEEFATSEQQQHHRGGEASSPGPAPMS---- 1017 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + + + ++ + Sbjct: 1018 ----------------AHDLLRRFHHVYPRIESYLRETRQEALR---------------- 1045 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + S R+ A + R VQ + Sbjct: 1046 ----------SFAVETLSGRK--------SLIAEKDANRRRQRAIAQA-------VQGGA 1080 Query: 607 RDILCEGMKNATKNGYD-----------IVLTVHDEIVSETPDTPYFS-VGTLCSLMT-K 653 D+L M+ + + +V++VHDE+V P V + ++ + Sbjct: 1081 ADVLHSAMRAVHQQRHSFLPYLPAATLALVMSVHDELVYAVPRAAIEEVVRGVQRVLEDQ 1140 Query: 654 NPSWAKGLPLKA 665 +PL Sbjct: 1141 ARVLRLAVPLPV 1152 >gi|294892786|ref|XP_002774233.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] gi|239879450|gb|EER06049.1| dna polymerase i, putative [Perkinsus marinus ATCC 50983] Length = 842 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 55/410 (13%), Positives = 104/410 (25%), Gaps = 102/410 (24%) Query: 273 LAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L R++++ +++ L+ L E + DG R + TGR QN Sbjct: 521 LWHLQRSIRISAAITSV--LSPLIERIKYDEDGFGRIHPSLALDTTTGRLCCRKPNLQNP 578 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R A G L+V D + +E R+LA Sbjct: 579 PSAHNDLY------------------------SIRKAFSARPGNTLIVGDYSQLELRILA 614 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ + I+ G DI+ F E + + + Sbjct: 615 HMSRCESMIRQLNQGGDIHSQCAVDLF--------PEVAEAVANGSVGRLHSRIDRRATV 666 Query: 451 MASHCGLDLQQFSQNVKSTSTFED-WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + +VK+ + + + + + A + L T + Sbjct: 667 QVVIDDAEAHPGIPSVKTKFSTQRQQAKVMNFSIAYGKTERTLAEEMDLPVTDIRDMFTR 726 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 W +GV + ++ + R Sbjct: 727 WNNSKKGVERWKAEILREVRAC-----------------------SGEFRHPRVGGRHRH 763 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 D T+ G IV+ VH Sbjct: 764 --DGHASRRSRRETTAH----------------------------------GVKIVMQVH 787 Query: 630 DEIVSETP-DTPYFSVGTLCSLMTKN-----PSWAKGLPLKAEGYEAKRY 673 DE++ E P + +V + LM P + + L + + Sbjct: 788 DEVILEGPAENATDAVPIVRDLMEHPFADIKPDYRMLINLDVDIATGTNW 837 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 68/321 (21%), Gaps = 89/321 (27%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLC-AYA-----WDDEPVKLWDRTEQSA-MPSDLLQ 59 D E L + + A+ + P+ D S + Sbjct: 98 DTE-FWNVELTRNTPAH--SSGELLCLTAFGGGKLDFGSGPLLFVDCKGPSRHVLDLFRS 154 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--------LKN 111 Y + + HN + + GI + T LAR S + Sbjct: 155 YFENPAKRKIFHNFAADAHVLYGH-GITVRGLE-ADTRYLARLFDSSLSSWEDQVRVSND 212 Query: 112 A-----CLALNFSEHLT----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 N E + + RF + + + +Y Sbjct: 213 LLVCLASRRKNHRRQREVVGVSDGESENCLYRFAGRLGIGGLEAH---CSEEKFGEWLKY 269 Query: 163 CKRDVEATRELFKRLIPLS----------------------------------------- 181 D T L++RL Sbjct: 270 AADDAYFTFMLYRRLTDTLRGQEWCTELHWQPIREKIRHGTTTFNGMNDPETYTGLSMSD 329 Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------------ 226 R L I RG+ + + +++ + ++ E Sbjct: 330 FAVKFYRPFTELLVEIERRGFGANREYLIQQLTAAQADLERHKEAFRMIAQSLKDRRGQP 389 Query: 227 -LTDGIIRSSRQTYALRMYLF 246 + R +R LF Sbjct: 390 LNPQAEFINPRSAKQIRQLLF 410 >gi|150404361|gb|ABR68494.1| DNA polymerase I [Lactobacillus casei] gi|150404383|gb|ABR68505.1| DNA polymerase I [Lactobacillus casei] gi|150404403|gb|ABR68515.1| DNA polymerase I [Lactobacillus casei] gi|150404405|gb|ABR68516.1| DNA polymerase I [Lactobacillus casei] gi|150404411|gb|ABR68519.1| DNA polymerase I [Lactobacillus casei] gi|150404421|gb|ABR68524.1| DNA polymerase I [Lactobacillus casei] gi|150404425|gb|ABR68526.1| DNA polymerase I [Lactobacillus casei] gi|150404427|gb|ABR68527.1| DNA polymerase I [Lactobacillus casei] gi|150404431|gb|ABR68529.1| DNA polymerase I [Lactobacillus casei] gi|225349756|gb|ACN87803.1| PolA [Lactobacillus casei] gi|225349758|gb|ACN87804.1| PolA [Lactobacillus casei] Length = 243 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQEQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGLKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|71755431|ref|XP_828630.1| DNA polymerase theta [Trypanosoma brucei TREU927] gi|70834016|gb|EAN79518.1| DNA polymerase theta, putative [Trypanosoma brucei] Length = 896 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 46/371 (12%), Positives = 96/371 (25%), Gaps = 93/371 (25%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR Q +P+ + ++ T + +R + G Sbjct: 594 TSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPE------WTMRHLYGPAPGC 647 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGK 433 L+ D +E RVLA ++G++ IK ++ D+ ++V R K Sbjct: 648 VLLSFDFNQMELRVLAHLSGDELLIKHLSSEYDVLSAMTRHITGLSDDEQVPPHLRETVK 707 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 V+ L Y G K + + + Sbjct: 708 VVVYGLFYGMGLATMKERVKILMDSAHSVPSSQRKFT----------------------- 744 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + +A+ ++ + + +++ RR Sbjct: 745 ---------ADTLLRAFHQRYPAAGKFLTRARIRAFHEARCVTLTGINDLSSEKDGNRRR 795 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 I+ Q S + Sbjct: 796 QHSIARIL-----------------------------------------QGSSSTLFQSA 814 Query: 614 MKNATKNGYDIV-----------LTVHDEIVSETPDTPYFSVG-TLCSLM-TKNPSWAKG 660 M + +DIV L +HDE++ + V + +M + ++ Sbjct: 815 MVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVARKIKGIMVEQAQVFSLR 874 Query: 661 LPLKAEGYEAK 671 +PL+ K Sbjct: 875 VPLRVSVKVGK 885 >gi|156122488|gb|ABU50235.1| DNA polymerase [Synechococcus phage S-CBP42] Length = 588 Score = 103 bits (257), Expect = 8e-20, Method: Composition-based stats. Identities = 82/561 (14%), Positives = 135/561 (24%), Gaps = 132/561 (23%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M L DIET A+ D V +D T + L Sbjct: 1 MR-LAFDIETDGLLRNLTKIHCIVAQD---------LDTNEVYKFDGTGDHPSIREGLAL 50 Query: 61 LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-----NGL--------- 105 L+D HN ++ K+ S T +L+R Sbjct: 51 LKDAD-ELWGHNIIGYDFEAIKEVFPRWNYSSTVYDTLILSRLFFTDLLDRDFRSRPANM 109 Query: 106 ------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 SL+ L+ K E GK+L + Sbjct: 110 PAQLYGRHSLEAWGHRLSV----HKSEFGKSLSG-----------------DWSTYSPEM 148 Query: 160 GEYCKRDVEATRELFKRL-------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 +YC RDV + L + E L + G+ D+ +L+ Sbjct: 149 LDYCARDVVVSVSLARLFTAKVAEYRDCISTEHRLATIMAWQESEGFPFDVAKAERLEGQ 208 Query: 213 IAQERKKLDEDIVK--------------------------LTDGIIRSSRQTYALRMYL- 245 + E KL E + + + + + Sbjct: 209 LRSELLKLSEQMRETFPYVDGGSFTPRTNNGPRGYVKGAAMCRLKEFNPTSRQHIAWAFA 268 Query: 246 ----FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + + + ++L + IL G N + V S Sbjct: 269 TFRDWEPKELTDTGKPKIDETTLLEYGTDEAKTFARILELQKHLGQLSEGANAWLKKVES 328 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ + + TGR + +P Sbjct: 329 DGRIHHSCVLN--TNTGRQAHMKPNLAQVPS----------------------------G 358 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R + V AD +G+E R L A +G +T + Sbjct: 359 HEYRELFHPGANRSQVGADASGLELRCLGHY-------LARFDGGKFAKEVVQGDIHTAL 411 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF-SQNVKSTSTFEDWEQAES 480 ++ R GK + L Y GG G Q + + S + Sbjct: 412 AEIYGTDRKSGKGVTYCLIYGGGDSKL---GLTAGASKAQAVKKGKEIRSRIMANLDGFA 468 Query: 481 HHLWMQDQYPEFAVKDKLIGT 501 + + V L G Sbjct: 469 ALNAAVQERAKSGVLKGLDGR 489 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 6/60 (10%) Query: 597 LTENIVQAISRDILCEGMKN----ATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 ++Q+ I + + G Y + VHDE+ + G L + Sbjct: 500 ALNYLLQSAGAVICKLWLLRSYELLDEAGIDYFPMAFVHDEVHISVAPSQAEQAGQLIQI 559 >gi|294948800|ref|XP_002785901.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983] gi|239900009|gb|EER17697.1| dna polymerase theta, putative [Perkinsus marinus ATCC 50983] Length = 1712 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 35/336 (10%), Positives = 81/336 (24%), Gaps = 79/336 (23%) Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--RSCIIASNGKKLV 377 + Q + + + + + R +A G+ L+ Sbjct: 1406 LASRAPQCTIQLSTGQKLVYPADQVFRQSAAVAVTADADARKRVIALRDAFVAPKGRLLL 1465 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D +EAR+LA G+ I F + Y +T + ++ + Sbjct: 1466 SVDYCQLEARLLAHFCGDQRLITLFNQPDGDYNSTGSPTYDIFVH--------------- 1510 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + + + + + + + + Sbjct: 1511 ------------------IASTWLSKALNEVSDMERNGIKQLVYGVIYGMGARSLSREMG 1552 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + E + + + V + + + G SI Sbjct: 1553 VTLAEGEALMSKFDNEFPRVREWTRSVIHGATREGASVPSIL------------------ 1594 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R + + G + A +Q QA + DI+ Sbjct: 1595 -------GRPRHLAGLGGGGTAQERARAQRQ--------AVNTACQASAADIMKAATLEV 1639 Query: 618 TKN-----------GYDIVLTVHDEIVSETPDTPYF 642 + +I+L +HDE++ E + Sbjct: 1640 ARRLAAMRDENGRPPAEILLQIHDELLLEVDEDRIE 1675 Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 47/195 (24%), Gaps = 28/195 (14%) Query: 161 EYCKRDVEATRELFKR--------------LIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 Y RD++ ++ L L E L + G + Sbjct: 1100 HYLDRDLKQCLAIYALCTELGRGLVQHSGLLELLVTVEAPTAALLVDMEVTGLMVTPSYW 1159 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV------------ 254 Q A+ + + E V+ G + + +F + + Sbjct: 1160 FHRQGKHARYKMQALEVAVREAVGRYVALGNAEDVSKAIFDDLNVPVPEGLRPRKVKKNG 1219 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSA--ILKLNTLSEAVSSDGRLRGTLQFY 312 + L + DL + + + K + V DG T Sbjct: 1220 HKVYAVDQKTLMQLDPPDRCHDLFDWIMEHRRLSHVLSKHAVIDRHVLHDGLRVHTTFTQ 1279 Query: 313 GASRTGRWSGCVFQP 327 + TGR Sbjct: 1280 TGTATGRLKSTDPNL 1294 >gi|84662633|ref|YP_453598.1| putative DNA directed DNA polymerase [Xanthomonas phage OP1] gi|84570682|dbj|BAE72745.1| putative DNA directed DNA polymerase [Xanthomonas oryzae phage OP1] Length = 793 Score = 103 bits (257), Expect = 9e-20, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 111/420 (26%), Gaps = 84/420 (20%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---------TLSEAVSSDGRL 305 E +++ S + + + + + V SDG + Sbjct: 382 KTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSDGIV 441 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 L + TGR S + QNLP+ ++S V+ Sbjct: 442 HHQL-QMVNTVTGRLSSALPNLQNLPKGDKS--------------------------EVK 474 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 ++ G +V +D +E V ++G+ I G D++ A+ D V Sbjct: 475 KLFVSRFPGGFIVQSDFTALEIYVQGNLSGDSALIADLRAGLDMHCKRLAQKEGVSYDYV 534 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 K + + Y ++ + S Sbjct: 535 ----FERAKDKKH-IDY-------------------------IVWNSKRSKAKGFSFQRA 564 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 A + + + + + GV + K + + S +A Sbjct: 565 YGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGVPEYNKRTMKELERNL----IPSKMYIA 620 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + + + P +R + QL T VQ Sbjct: 621 SSYEVGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSST---TTKNYPVQG 677 Query: 605 ISRDILCEGMKNA----TKNG-----YDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654 + + M G IV TVHD + P+ S+ L + M + Sbjct: 678 TGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACMEEA 737 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/279 (8%), Positives = 61/279 (21%), Gaps = 27/279 (9%) Query: 4 LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L D+ET K + +W + +P D + + Sbjct: 19 LAWDLETGTRTLHKRKASPFDIQNDIWAVGFGRSWSESKGYH-KAVHG--IPEDWFRVIL 75 Query: 63 DETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNGLP------SSL 109 + + N F+ + + + + + +S+ Sbjct: 76 NNCRVLAGFNIKFDLLYALRDKDNHTAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIASM 135 Query: 110 KNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRD 166 + S K K+ D G Sbjct: 136 DDVAPLYGGSC---KDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNTANIFK 192 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + + I L G +D+ ++++ + + + E + K Sbjct: 193 GQLKLAKDRGQIASITLNNAALLYTVEAELNGMYVDVAKGDEIRQQLLAKLVHISEQVNK 252 Query: 227 LTDGIIR---SSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + LF G+ + + Sbjct: 253 GLPEDLPFEFNWASPKQRSALLFG-GGVKYKSREQSRDE 290 >gi|157870107|ref|XP_001683604.1| DNA polymerase theta (polymerase domain only) [Leishmania major strain Friedlin] gi|68126670|emb|CAJ04554.1| putative DNA polymerase theta [Leishmania major strain Friedlin] Length = 1170 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 58/459 (12%), Positives = 107/459 (23%), Gaps = 131/459 (28%) Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA---------------SRTGR 319 + + R + + L +A + DG A + TGR Sbjct: 756 RLHDMFRKVADKLHVCVLEKPRDAAAEDGTAVPDAWTAQASQVCYSMHPDWVLHNTSTGR 815 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV--------------- 364 + QNLP+Q + A + D + Sbjct: 816 IFSALPNVQNLPKQPPRTMFPIHALSATPSRNSGGDESLRPYSHIDPPTEEDVERWLSLA 875 Query: 365 ------------------------RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 R A G L D +E R+LA ++G+ + Sbjct: 876 EAAAVDQASPAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQE 935 Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + D+ A P ID+V +QR KV+ L Y G + + Sbjct: 936 HLSANVDVLALVTASVLRLPSIDRVRPQQRQAVKVVVYGLLYGMGLESMDVRIKKINEEF 995 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 Q + + + + + Sbjct: 996 AASEQQQHRGEASSSAPAPMP----------------------ARDLLRRFHRVYPRIES 1033 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 ++ + + S R+ Sbjct: 1034 YLRETRQEALR--------------------------SFAVETLSGRK--------SLIA 1059 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----------KNGYDIVLTV 628 A + R VQ + D+L M+ +V+++ Sbjct: 1060 EKDANRRKQRAIAQA-------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSI 1112 Query: 629 HDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPLKA 665 HDE+V P V + ++ + +PL Sbjct: 1113 HDELVYAVPRVAIDEVVRGVQRILEDQARVLRLAVPLPV 1151 >gi|225349766|gb|ACN87808.1| PolA [Lactobacillus casei] Length = 243 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQEQTDLF--TDMEPTLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|213025755|ref|ZP_03340202.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 107 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 36/132 (27%), Gaps = 26/132 (19%) Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 + T + +L + +IL + + L ++ GR+ + Sbjct: 1 KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYH 60 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P +R IA Sbjct: 61 QAV-TATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFIA 95 Query: 371 SNGKKLVVADLA 382 +V AD + Sbjct: 96 PEDYLIVSADYS 107 >gi|150404389|gb|ABR68508.1| DNA polymerase I [Lactobacillus casei] gi|225349760|gb|ACN87805.1| PolA [Lactobacillus casei] Length = 243 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 69/253 (27%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + GK + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYGKGAKRQVPEDDKLFGQFARKSD------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLKKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKALKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] Length = 115 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S PL K G + Y E I L AY+ D++PV++ D +P ++ Sbjct: 1 MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60 Query: 59 QYLRDETVMCVAH 71 L DE V+ A Sbjct: 61 LALEDEFVIKWAW 73 >gi|32128451|ref|NP_858986.1| DNA polymerase lacking N-terminal exonuclease domain [Xanthomonas phage Xp10] gi|31788514|gb|AAP58706.1| 38L [Xanthomonas phage Xp10] Length = 794 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 56/420 (13%), Positives = 111/420 (26%), Gaps = 84/420 (20%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---------TLSEAVSSDGRL 305 E +++ S + + + + + V SDG + Sbjct: 382 KTGEEVTQALASWEDAPEFVQQYAAQARITKDLGTYYYTVDPETGETKGMLSLVGSDGIV 441 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 L + TGR S + QNLP+ ++S V+ Sbjct: 442 HHQL-QMVNTVTGRLSSALPNLQNLPKGDKS--------------------------EVK 474 Query: 366 SCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + ++ G +V +D +E V ++G+ I G D++ A+ D V Sbjct: 475 TLFVSRFPGGFIVQSDFTALEIYVQGNLSGDIALIADLRAGLDMHCKRLAQKEGVSYDYV 534 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 K + + Y ++ + S Sbjct: 535 ----FERAKDKKH-IEY-------------------------IVWNSKRSKAKGFSFQRA 564 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 A + + + + + G+ + K + + S +A Sbjct: 565 YGAGAAAIAAATGMTVDEVKEMIRIEDEMYPGIPEYNKRTMKELERNL----IPSKMYIA 620 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQA 604 + + + + P +R + QL T VQ Sbjct: 621 SSYEAGVSLNLGKSYFRTPDGKRYTMYQTQAPKWLWEREGVQLTFSST---TTKNYPVQG 677 Query: 605 ISRDILCEGMKNA----TKNG-----YDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654 + + M G IV TVHD + P+ S+ L + M + Sbjct: 678 TGGEWMKAAMALIVQQWYARGNFGGRSLIVNTVHDAAYIDSAPEVAKESMALLHACMEEA 737 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 26/263 (9%), Positives = 58/263 (22%), Gaps = 26/263 (9%) Query: 4 LFIDIET-RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L D+ET K + +W + +P D + + Sbjct: 19 LAWDLETGTRTLHKRKASPFDVQNDIWAVGFGRSWQESKGYH-KAVHG--IPEDWFRVIL 75 Query: 63 DETVMCVAHNSLFERILFKK-------TLGIDIPSKRWICTSVLARTNGLP------SSL 109 + + V N F+ + + + + + +S+ Sbjct: 76 NNCRVLVGFNIKFDLLYALRDKANHAAWMQWVTDGGKVWDCQLAEYLLQGMAQEWQIASM 135 Query: 110 KNACLALNFSEHLTKMEEGKAL--IARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRD 166 + S K K+ D G Sbjct: 136 DDVAPLYGGSC---KDHAVKSCWENGIDTGEIDPDMLMDYLLGTGEDNLGDIGNTANIFK 192 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + + I L G +D+ ++++ + + L E + K Sbjct: 193 GQLKLVKERGQIASITLNNAALLYTVEAELNGMFVDVAKGEEIRQQLLAKLMHLSEQVNK 252 Query: 227 LTDGIIR---SSRQTYALRMYLF 246 + + LF Sbjct: 253 GLPEDLPFEFNWASPKQRSALLF 275 >gi|261334514|emb|CBH17508.1| DNA polymerase theta, putative [Trypanosoma brucei gambiense DAL972] Length = 846 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 45/371 (12%), Positives = 95/371 (25%), Gaps = 93/371 (25%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR Q +P+ + ++ T + +R + G Sbjct: 544 TSTGRLYCSRPNLQTVPKTAQKCTYVSPLTSDYGLLFTNPE------WTMRHLYGPAPGC 597 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGK 433 L+ D +E RVLA ++G++ I+ ++ D+ ++V R K Sbjct: 598 VLLSFDFNQMELRVLAHLSGDELLIQHLSSEYDVLSAMTRHLTGLSDDEQVPPHLRETVK 657 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 V+ L Y G K + + Sbjct: 658 VVVYGLFYGMGLATMKE--------------------------RVKILMDSAHSVPSSQR 691 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + +A+ ++ + + +++ RR Sbjct: 692 KIT------ADTLLRAFHQRYPAAGKFLTRARIRAFHEARCVTLTGINDLSSEKDGNRRR 745 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG 613 I+ Q S + Sbjct: 746 QHSIARIL-----------------------------------------QGSSSTLFQSA 764 Query: 614 MKNATKNGYDIV-----------LTVHDEIVSETPDTPYFSVG-TLCSLM-TKNPSWAKG 660 M + +DIV L +HDE++ + V + +M + ++ Sbjct: 765 MVKVHERRHDIVPNLPAAPFALVLCIHDELIYSVVEGYVDVVAREIKGIMVEQAQVFSLR 824 Query: 661 LPLKAEGYEAK 671 +PL+ K Sbjct: 825 VPLRVSVKVGK 835 >gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52] gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52] Length = 481 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 26/137 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET + + A + ++A + + Sbjct: 357 FAFDTETDNLDYMV----------ANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWV 406 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + L L DE+ V N ++ + + G+++ R T + + + Sbjct: 407 IAQLKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMD 464 Query: 111 NAC-LALNFSEHLTKME 126 + L S + Sbjct: 465 SLALRFLQHSCISFEQV 481 >gi|256824902|ref|YP_003148862.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Kytococcus sedentarius DSM 20547] gi|256688295|gb|ACV06097.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Kytococcus sedentarius DSM 20547] Length = 587 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 72/522 (13%), Positives = 120/522 (22%), Gaps = 152/522 (29%) Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIAQ- 215 L ++ A RL L E L+ Q +N G D +L + + Sbjct: 150 LAEHRAQQACLAEARDGGRLALLCHAESVGGLIAQELNHAGVPFDASVHHAQLTTALGEA 209 Query: 216 --------ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 L I + D + L L G+++ + Sbjct: 210 DRHGGRPARMAALVARIRETLDAPGLNPDSAPTLVAALR-RAGLEVTSTRKW------EL 262 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + + +L A + + DGR R G TGRW+ Sbjct: 263 RGLDHPVIEPLLEYKALARLYTANGWSWMRHWVRDGRFRPDWV-AGGVVTGRWASRGGGA 321 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 LP+ +RS + A G +LVVAD A +E R Sbjct: 322 LQLPQ------------------------------QIRSAVRAEPGWRLVVADAAQLEPR 351 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA ++ + +A A G+ + RA KV L Y + Sbjct: 352 VLAAMSQDGAMARAAAAGDLYQGLVDEGVV---------DTRAHAKVAMLGAMYGATSG- 401 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + +A +G Sbjct: 402 ---------------EAGALMARLRRAYPRAMGWVDAAAAAGERGERVSTWLGR------ 440 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 W++ Sbjct: 441 -----TSPAPPAFWREAQAAAQ-------------------------------------- 457 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM--KN--------- 616 + A S R +G +VQ + + M Sbjct: 458 ----HPDASPAAERRAHSA---AREWGRFTRNFVVQGTAAEWALCWMGFLRRGLDDLHGP 510 Query: 617 ------------ATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 T + ++V +HDE++ P+ V Sbjct: 511 GGMREGDGGPGGLTASRPELVYFLHDEVIVHAPEEFADEVAE 552 >gi|325272840|ref|ZP_08139177.1| DNA polymerase [Pseudomonas sp. TJI-51] gi|324102045|gb|EGB99554.1| DNA polymerase [Pseudomonas sp. TJI-51] Length = 683 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 70/561 (12%), Positives = 128/561 (22%), Gaps = 152/561 (27%) Query: 70 AHN-SLFERILFKK-TLGIDIPSKRWICTSVLARTNGL---------------------P 106 HN ++ + +K G + I T V R Sbjct: 61 GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 120 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165 SL+ L + + ++ Q +YC + Sbjct: 121 HSLEAWGYRLRL------------MKGEYATEFKARMGDAYVDGMEWLEFSQEMLDYCVQ 168 Query: 166 DVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----- 214 DV T L+KR+ E + L G+ + + L +A Sbjct: 169 DVVVTSALWKRILGKNYSPRALALEHRVAWLMAAQERNGFHFNREKAAILYAKLAQRRGD 228 Query: 215 ------------------------------------QERKKLDEDIVKLTDGII------ 232 + R KL G Sbjct: 229 LERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFTQVGWFEKYTEG 288 Query: 233 ----------RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278 + + L + G ++ ++S N L+ Sbjct: 289 TRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLNYPP--CKLL 346 Query: 279 LNRLASSGSAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L + V GR+ G++ GA TGR + +P Sbjct: 347 TEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGA-ATGRATHAYPNVAQVP----- 400 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-- 394 R +G LV AD +G+E R LA Sbjct: 401 ------------------ASGSPYGIDCRELFTVPHGWLLVGADASGLELRCLAHFMARY 442 Query: 395 -----EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 D + + ++ + + K R K A Y G + Sbjct: 443 DGGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVG 502 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 T G+ + + + + + + + + +K Sbjct: 503 T--IVYGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKLKAT------------ 548 Query: 510 WRAKHQGVLQLWKDLTEGFAC 530 + K + +L K + E Sbjct: 549 FLRKTPALKKLVKAVKEAAKR 569 >gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ E Sbjct: 1 FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 QR K + L Y L++ + FE + + + Sbjct: 61 QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVLQYMERTR 114 >gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli] gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli] gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli] gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli] gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli] gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli] gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli] gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli] gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli] gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli] gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli] gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli] gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli] gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli] gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli] gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli] gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli] gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli] gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli] gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli] gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli] gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli] gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli] gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli] gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli] gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli] gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli] gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli] gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli] gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli] gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli] gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli] gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli] gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli] gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli] gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli] gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli] gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli] gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli] gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli] gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli] gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli] gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli] gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli] gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli] gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli] gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli] gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli] gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli] gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli] gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli] gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli] gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli] gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli] gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli] gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli] gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli] gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli] gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli] gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli] gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli] gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli] gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli] gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli] gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli] gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli] gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli] gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ E Sbjct: 1 FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 QR K + L Y L++ + FE + + + Sbjct: 61 QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114 >gi|283969415|gb|ADB54441.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969418|gb|ADB54442.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969420|gb|ADB54443.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969440|gb|ADB54453.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] gi|283969448|gb|ADB54457.1| DNA polymerase I [Leptospira kirschneri] Length = 144 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+ +L +E + L+ +I K G + T L+ LF + +V + Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHKQAGGPF-NIASTKELQKILFDNLKLRIVKKT 60 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + +L+ + ++ L + V+ GR+ + Sbjct: 61 QTGFSTDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338 A TGR S QN+P ++R Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144 >gi|283969363|gb|ADB54415.1| DNA polymerase I [Leptospira interrogans] gi|283969375|gb|ADB54421.1| DNA polymerase I [Leptospira interrogans serovar Canicola] gi|283969377|gb|ADB54422.1| DNA polymerase I [Leptospira interrogans serovar Canicola] gi|283969379|gb|ADB54423.1| DNA polymerase I [Leptospira interrogans serovar Canicola] gi|283969381|gb|ADB54424.1| DNA polymerase I [Leptospira interrogans] gi|283969383|gb|ADB54425.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni] gi|283969385|gb|ADB54426.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969387|gb|ADB54427.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969389|gb|ADB54428.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969391|gb|ADB54429.1| DNA polymerase I [Leptospira interrogans serovar IH CF1] gi|283969393|gb|ADB54430.1| DNA polymerase I [Leptospira interrogans] gi|283969395|gb|ADB54431.1| DNA polymerase I [Leptospira interrogans serovar Icterohaemorrhagiae] gi|283969399|gb|ADB54433.1| DNA polymerase I [Leptospira interrogans] gi|283969401|gb|ADB54434.1| DNA polymerase I [Leptospira interrogans] gi|283969403|gb|ADB54435.1| DNA polymerase I [Leptospira interrogans] gi|283969405|gb|ADB54436.1| DNA polymerase I [Leptospira interrogans serovar Pomona] gi|283969407|gb|ADB54437.1| DNA polymerase I [Leptospira interrogans serovar Pomona] gi|283969422|gb|ADB54444.1| DNA polymerase I [Leptospira interrogans] gi|283969424|gb|ADB54445.1| DNA polymerase I [Leptospira interrogans] gi|283969426|gb|ADB54446.1| DNA polymerase I [Leptospira interrogans] gi|283969428|gb|ADB54447.1| DNA polymerase I [Leptospira interrogans] gi|283969430|gb|ADB54448.1| DNA polymerase I [Leptospira interrogans] gi|283969432|gb|ADB54449.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni] gi|283969436|gb|ADB54451.1| DNA polymerase I [Leptospira interrogans] gi|283969438|gb|ADB54452.1| DNA polymerase I [Leptospira interrogans] gi|283969444|gb|ADB54455.1| DNA polymerase I [Leptospira interrogans] gi|283969446|gb|ADB54456.1| DNA polymerase I [Leptospira interrogans] gi|283969450|gb|ADB54458.1| DNA polymerase I [Leptospira interrogans] gi|283969452|gb|ADB54459.1| DNA polymerase I [Leptospira interrogans] gi|283969454|gb|ADB54460.1| DNA polymerase I [Leptospira interrogans] Length = 144 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+ +L +E + L+ +I + G + T L+ LF + +V + Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDDLKLRIVKKT 60 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + +L+ + ++ L + V+ GR+ + Sbjct: 61 QTGFSTDHEVLEELAGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338 A TGR S QN+P ++R Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144 >gi|150404367|gb|ABR68497.1| DNA polymerase I [Lactobacillus casei] gi|150404369|gb|ABR68498.1| DNA polymerase I [Lactobacillus casei] gi|150404385|gb|ABR68506.1| DNA polymerase I [Lactobacillus casei] gi|150404393|gb|ABR68510.1| DNA polymerase I [Lactobacillus casei] gi|150404395|gb|ABR68511.1| DNA polymerase I [Lactobacillus casei] gi|150404435|gb|ABR68531.1| DNA polymerase I [Lactobacillus casei] Length = 243 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 26/253 (10%), Positives = 68/253 (26%), Gaps = 38/253 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILF--------KKTLGIDIPSKRWICTSVLARTNGLPSS 108 + ++L D + + +F LG+ +P + + + + Sbjct: 10 VKRWLED---------AKRDLTVFDGKRNIVAANRLGVKLPDIAF-DVLLASYLINPDEN 59 Query: 109 LKNACL------ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + K + + + LF Sbjct: 60 SNDLGKIAEDHDYHDLPRD--EDIYDKGAKRQVPEDDKLFGQFARKSN------ALFALR 111 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + ++ L +D E L + + +G ++ + + +Q K L+E Sbjct: 112 PDLTGDLEKQAQTDLF--TDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFSQSIKILEE 169 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I + L LF + ++ ++ T +L+ IL Sbjct: 170 KIYAEAGVKF-NLNSPKQLGEILFEKLNLPVIKKTKTGYSTSVDVLNELKSASPIVQDIL 228 Query: 280 NRLASSGSAILKL 292 + + + Sbjct: 229 DYRGWAKLNSTYV 241 >gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ E Sbjct: 1 FIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 QR K + L Y L++ + FE + + + Sbjct: 61 QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVPEYMERTR 114 >gi|32442303|gb|AAP82222.1| DNA polymerase [Podovirus SOG] Length = 409 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 117/449 (26%), Gaps = 82/449 (18%) Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 T VL+R + + + + +L A + S YD + Sbjct: 1 DTLVLSRLVWSDLKVNDFRYIEKNPDFPRNLIGSHSLKAWGLRLSNLKDDYDGGWDTWSK 60 Query: 155 AWQLFGEYCKRDVEATRELFKRLI------PLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 +YC++D +A L+K+++ E + + + G+ D + + Sbjct: 61 D---MQDYCEQDCQANWTLYKKIMSKRPSADSVRLEHEFAAVIRKQERIGFNFDTNKANQ 117 Query: 209 LQELIAQERKKLDEDIV-----------------------------KLTDGIIRSSRQTY 239 L + + +L+ + I+ + Sbjct: 118 LLAKLQGRQAELEAKLQTAFPPWEIKTPFTPKVNNKSRGYVKGVLTYKVKEIVFNPASRD 177 Query: 240 ALRMYLFL----ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI--LKLN 293 + L + +++L + A L + L + I +N Sbjct: 178 HIADRLQKLRCWKPELMTDQGKPKVDEAVLKTLDYP-EASILNEDLLINKRIGILATGVN 236 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + V G++ G + GA TGR + P Sbjct: 237 GWLKMV-KGGKIHGRVNTNGA-ATGRCTHSKPNVAQTP---------------------- 272 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R A G LV ADL+G+E R LA + F +G V Sbjct: 273 -SVGAAYGRECRELFHAPEGYSLVGADLSGLELRCLAHY------MARFDSGSYADVVVN 325 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 R K Y G ++ +D + + + Sbjct: 326 GDIHTLNQKSAGLPTRNNAKTFIYGFLYGAGPAKIGSI-----VDGSEKEGRKLISKFMK 380 Query: 474 DWEQAESHHLWMQDQYPEF-AVKDKLIGT 501 + + + + L G Sbjct: 381 ATPAIKLLRTAVSEVVKKNGGYLKGLDGR 409 >gi|328479632|gb|EGF48820.1| DNA polymerase I [Lactobacillus rhamnosus MTCC 5462] Length = 105 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 +Q + DI+ M K ++L VHDE++ E P +G L Sbjct: 20 AMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPK 79 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 +M S A +PLK E + + Sbjct: 80 IMDSAVSLA--VPLKVESHYGPTW 101 >gi|115754782|ref|XP_790049.2| PREDICTED: similar to DNA polymerase N [Strongylocentrotus purpuratus] gi|115960873|ref|XP_001194514.1| PREDICTED: similar to DNA polymerase N [Strongylocentrotus purpuratus] Length = 1312 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 49/460 (10%), Positives = 105/460 (22%), Gaps = 130/460 (28%) Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI----DLVD 255 ++ + +L + E K ++ K + LR LF + Sbjct: 762 KLQRKNLWELFINLEDEIKDVERQCYKKAGHPFQ-ITSHIQLRQVLFDELKLDELCPGQK 820 Query: 256 MS-------EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ + T + +L +L+L Sbjct: 821 LARTNVQNLKSTSEMVLHKLKDLHPLPELVLTHRQ------------------------- 855 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 QN+P+Q + P +R Sbjct: 856 -----------------NIQNIPKQPLQVHKDANGSVVNESTVSSTAPATTL--WMREPF 896 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY--AKAFNTPIDKVSK 426 + G + AD IE R+LA ++ + +K F + + + ++ V Sbjct: 897 FSHEGWSFIAADFQSIELRILAHLSQDAVLLKVFNDAGSTDIFVQLTCEWLGLNLEDVKT 956 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + ++ Y GA+ L+ + + + S ++ + Sbjct: 957 GDRERTKRIVYSVIYGVGAERLAET-----LNDTKENAKAFTKSFLVKFKGVNTFAQRCI 1011 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + + + + + Sbjct: 1012 SECQRHGHVKTIFHR---------HRLISNISSQNFHVRSHAERQAVNFVIQGSAADIC- 1061 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 +L + S NT ++L +VQ Sbjct: 1062 --------------------KLAMIHIMTVLSERNTVRARL-------------LVQ--- 1085 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 +HDE++ E D V Sbjct: 1086 ---------------------IHDELLFEVHDEDINEVKA 1104 >gi|71416914|ref|XP_810416.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL Brener] gi|70874942|gb|EAN88565.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma cruzi] Length = 1627 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 116/426 (27%), Gaps = 105/426 (24%) Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 K L R + + L AV + R+ G L + + TGR S QN+ Sbjct: 1275 FFKALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGEL-CHTVTATGRLSSQSPNLQNI 1333 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK---LVVADLAGIEAR 387 PR+E +R I++ G++ ++ AD + +E Sbjct: 1334 PREED----------------------------LRRLIVSRFGRREGRMIEADYSQLEVV 1365 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA ++ + ++ + D + + P + Sbjct: 1366 VLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------------------ 1401 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + + S A L E + Sbjct: 1402 ---------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLI 1452 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR---HKRDVHIVLPS 564 A ++ + + ++ + + + A + R + + V+P+ Sbjct: 1453 SAEEQHYKDLSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPT 1512 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617 + ++ K +L VQ ++ +I+ Sbjct: 1513 GSKFDFAKDKKSI-----------------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEK 1555 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--------PSWAKGLPLKAE 666 +V TVHD + + + V + +M+ P +P A+ Sbjct: 1556 RNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1615 Query: 667 GYEAKR 672 + Sbjct: 1616 VHIGPS 1621 >gi|71414776|ref|XP_809478.1| mitochondrial DNA polymerase I protein C [Trypanosoma cruzi strain CL Brener] gi|70873866|gb|EAN87627.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma cruzi] Length = 1499 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 116/426 (27%), Gaps = 105/426 (24%) Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 K L R + + L AV + R+ G L + + TGR S QN+ Sbjct: 1147 FFKALQQLRFTEKKMQLFEEGALFRAVLPECKDRVHGEL-CHTVTATGRLSSQSPNLQNI 1205 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK---LVVADLAGIEAR 387 PR+E +R I++ G++ ++ AD + +E Sbjct: 1206 PREED----------------------------LRRLIVSRFGRREGRMIEADYSQLEVV 1237 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 VLA ++ + ++ + D + + P + Sbjct: 1238 VLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------------------ 1273 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + + S A L E + Sbjct: 1274 ---------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATTTGLTEHEVERLI 1324 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR---HKRDVHIVLPS 564 A ++ + + ++ + + + A + R + + V+P+ Sbjct: 1325 SAEEQHYKDLSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMILLTEPLHYFVVPT 1384 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617 + ++ K +L VQ ++ +I+ Sbjct: 1385 GSKFDFAKDKKSI-----------------PRLKNYPVQGLAGEIVQIMCGKIVRRFYEK 1427 Query: 618 --TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN--------PSWAKGLPLKAE 666 +V TVHD + + + V + +M+ P +P A+ Sbjct: 1428 RNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLWPDVKLDVPFNAD 1487 Query: 667 GYEAKR 672 + Sbjct: 1488 VHIGPS 1493 >gi|154338261|ref|XP_001565355.1| DNA polymerase theta (polymerase domain only) [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062404|emb|CAM42265.1| putative DNA polymerase theta (polymerase domain only) [Leishmania braziliensis MHOM/BR/75/M2904] Length = 977 Score = 100 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 58/422 (13%), Positives = 107/422 (25%), Gaps = 122/422 (28%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + D L + TGR + QNLP+Q + A + Sbjct: 604 IHPDWALHN-------TSTGRIFSALPNVQNLPKQPPRTAFPIHALSATQDRSSNGGGDE 656 Query: 359 LASD-----------------------------------------CVRSCIIASNGKKLV 377 +R A G LV Sbjct: 657 SLRPYGYVDSPTEEDVDRWLSLAEAGVIDQASSAQFLLFPEHPQWTLRHLYCAPPGCVLV 716 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVME 436 D +E R+LA ++G+ + ++ D+ A P ID V EQR KV+ Sbjct: 717 SFDFNQLELRLLAHLSGDSALQEHLSSNVDVLALVTASVLRLPSIDHVRPEQRQAVKVIV 776 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 L Y G ++ + Q + E A S Sbjct: 777 YGLLYGMGPELMDVRIRKINEEFATAEQQQQHDR-----EGAASSSDPESASAR------ 825 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + + + V ++ + + Sbjct: 826 --------DLLRRFYHAYPRVESYLRETRQEA--------------------------QN 851 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + + S R+ + ++ + VQ + D+L M+ Sbjct: 852 SLVVETLSGRKTLLAETDANRRKQRAIAQA---------------VQGGAADVLHSAMRA 896 Query: 617 AT-----------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPL 663 +V+++HDE+V TP V + ++ + +PL Sbjct: 897 VHQQRHSFLPYLPAAPLALVMSIHDELVYATPRVAIDEVVRGVQRILEDQARVLRLAVPL 956 Query: 664 KA 665 Sbjct: 957 PV 958 >gi|26988997|ref|NP_744422.1| DNA polymerase [Pseudomonas putida KT2440] gi|24983817|gb|AAN67886.1|AE016420_8 DNA polymerase [Pseudomonas putida KT2440] Length = 695 Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats. Identities = 69/561 (12%), Positives = 127/561 (22%), Gaps = 152/561 (27%) Query: 70 AHN-SLFERILFKK-TLGIDIPSKRWICTSVLARTNGL---------------------P 106 HN ++ + +K G + I T V R Sbjct: 73 GHNVIKYDIPVIQKLYPGFIVNPALVIDTLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGS 132 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165 SL+ L + + ++ Q +YC + Sbjct: 133 HSLEAWGYRLRL------------MKGEYATEFKARMGDAYVDGMEWLEFSQEMLDYCVQ 180 Query: 166 DVEATRELFKRL------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----- 214 DV T L+KR+ E + L G+ + + L +A Sbjct: 181 DVVVTSALWKRILGKNYSARALALEHRVAWLMAAQERNGFHFNREKAALLYAKLAQRRGD 240 Query: 215 ------------------------------------QERKKLDEDIVKLTDGII------ 232 + R KL G Sbjct: 241 LERELKEFFKFWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFNQVGWFEKYTEG 300 Query: 233 ----------RSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLI 278 + + L + G ++ ++S + L+ Sbjct: 301 VRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKLSYPP--CKLL 358 Query: 279 LNRLASSGSAILKLNTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L + V GR+ G++ GA TGR + +P Sbjct: 359 TEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGA-ATGRATHAYPNVAQVP----- 412 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG-- 394 R G LV AD +G+E R LA Sbjct: 413 ------------------ASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHFMARY 454 Query: 395 -----EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 D + + ++ + + K R K A Y G + Sbjct: 455 DGGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTFIYAFLYGAGDEKVG 514 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 T G+ + + + + + + + + +K Sbjct: 515 T--IVFGMVAKAKALGLDYQHLLDVFFNGQDNPDEEALKAAGKKLKAT------------ 560 Query: 510 WRAKHQGVLQLWKDLTEGFAC 530 + K + +L K + E Sbjct: 561 FLRKTPALKKLVKAVKEAAKR 581 >gi|168705115|ref|ZP_02737392.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 125 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 15/125 (12%) Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + R ++ D + + RE +Q + D++ + M Sbjct: 1 ERGRLQTILGRWRAFNLDGRDVNSTYQGRTMAAREAI------NYEIQGSAADLIKKAML 54 Query: 616 ------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGY 668 A + ++LTVHDE+V E P + L MT +PLK + Sbjct: 55 GAHARMAAQRLHARMLLTVHDELVFEAPPAEVEPLARLVREEMTSAIK--LDVPLKVDVA 112 Query: 669 EAKRY 673 + Sbjct: 113 AGPNW 117 >gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 143 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 8/149 (5%) Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 V A T GLP SLK+ LN KM+EGK LI FC +S ++ W Sbjct: 1 MVWAATLGLPLSLKDVGKVLNLDAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGW 56 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 +LF Y RDV+ + ++L P+ + + + +DQ INDRG RID L + Sbjct: 57 KLFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTLAASAITIDE 116 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRM 243 + R + KLT + + L+ Sbjct: 117 KHRAQALARAHKLTG--LDNPASPLQLQE 143 >gi|283969353|gb|ADB54410.1| DNA polymerase I [Leptospira interrogans serovar Bratislava] gi|283969355|gb|ADB54411.1| DNA polymerase I [Leptospira interrogans] gi|283969357|gb|ADB54412.1| DNA polymerase I [Leptospira interrogans serovar Australis] gi|283969359|gb|ADB54413.1| DNA polymerase I [Leptospira interrogans serovar Muenchen] gi|283969361|gb|ADB54414.1| DNA polymerase I [Leptospira interrogans serovar Muenchen] gi|283969365|gb|ADB54416.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969367|gb|ADB54417.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969369|gb|ADB54418.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969371|gb|ADB54419.1| DNA polymerase I [Leptospira interrogans serovar Autumnalis] gi|283969373|gb|ADB54420.1| DNA polymerase I [Leptospira interrogans serovar Bataviae] gi|283969397|gb|ADB54432.1| DNA polymerase I [Leptospira interrogans serovar Lai] gi|283969409|gb|ADB54438.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes] gi|283969413|gb|ADB54440.1| DNA polymerase I [Leptospira interrogans serovar Wolffi] gi|283969434|gb|ADB54450.1| DNA polymerase I [Leptospira interrogans serovar Lai] gi|283969456|gb|ADB54461.1| DNA polymerase I [Leptospira interrogans serovar Bratislava] Length = 144 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+ +L +E + L+ +I + G + T L+ LF + +V + Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKT 60 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + +L+ + ++ L + V+ GR+ + Sbjct: 61 QTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338 A TGR S QN+P ++R Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144 >gi|281413897|ref|ZP_06245639.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 134 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 18/139 (12%) Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 V + R V+ + ++D + RR D+ D L + Sbjct: 2 GVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERA---------ALNAP 52 Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 +Q + DI+ M + ++L VHDE++ E P L M + Sbjct: 53 IQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRA 112 Query: 655 PSWAKGLPLKAEGYEAKRY 673 +PL + + Sbjct: 113 AE--LSVPLDVHVGRGRSW 129 Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 4/58 (6%), Positives = 11/58 (18%), Gaps = 9/58 (15%) Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + + Q + + G R + + L + Sbjct: 2 GVRDYLRDVVAQARQDGYTSTIEGR---------RRYLPDLSSDNRQLRDMAERAALN 50 >gi|32442293|gb|AAP82217.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 68/472 (14%), Positives = 115/472 (24%), Gaps = 137/472 (29%) Query: 95 CTSVLARTNGLP----SSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 T VL+ SLK N EG Sbjct: 1 DTLVLSSLANPSLEGGHSLKAWGERIHNLKG----DYEG--------------------- 35 Query: 150 ANHVQAWQLFGE----YCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDR 197 W+ F YC++DV ++L++RL + E + + Sbjct: 36 -----GWETFNPEMLAYCQQDVRLLKDLYRRLEVQLEDFDEASIELEHKVAEIIYRQEQT 90 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVK------------------------------- 226 G D +L + ++ ++ ++ + Sbjct: 91 GVLFDERKGYELLAELKEKVHEIVLEVREVFKPLPVWKSLQVLKNPLKKDGNPSVAYQKQ 150 Query: 227 --------------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL---KSILSHSN 269 D + + YL +G++ + +L+ + Sbjct: 151 LDRGAHYDSDGDWGYKDYPEFNLGSRQQVSRYLQHFGWSPTEWTDKGSVIVNEKVLADVD 210 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 I AK ++ S + + EAV DGR+ G + GA TGR + Sbjct: 211 IP-EAKMIMEYFTISKR--VAMVKAWLEAVGDDGRIHGRVNSCGA-VTGRMTHSKPNLAQ 266 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + R I GK LV D +G+E R+L Sbjct: 267 VP-----------------------AIYSPYGEECRELWIVPEGKCLVGIDASGLELRML 303 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A + + R K A Y GG Sbjct: 304 AHYMNDKD---------YTDEILNGDIHTANQLAAGLQSRDQAKTFIYAFLYGGGDGKIG 354 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + D Q+ + A D+ L G Sbjct: 355 EIVGGKAKDGQRLKAKFLDNTP------ALRELRGEVDRGSSKGWMKGLDGR 400 >gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 92 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ VK+WD TE MP+DL Y Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPS 90 ++ V HN +F+ ++ K L ID+P Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLPL 91 >gi|32442287|gb|AAP82214.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 62/462 (13%), Positives = 118/462 (25%), Gaps = 119/462 (25%) Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 T VL+R S + G I ++++ Sbjct: 1 DTLVLSRLFNPN-------REGGHSXXXRGYKLGYHKIDF---------------SDYLN 38 Query: 155 AWQLFGEYCKRDVEATRELFKRLIP--------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + +YC RDV+ + K+L E+ + + + G++ DL Sbjct: 39 YSKEMLDYCVRDVQLNAVVLKKLREESRGFSKQCIAIEQGVARIMKQQEVNGFKFDLQSA 98 Query: 207 LKLQELIAQERKKLDEDIVKLTDGII---------------------------------- 232 L L + ++++ +++++ Sbjct: 99 LLLLAKLREKKQSIEDEVHNTFKPKWVDDKLVKPYIKKDGDLSKRGLTDDEYQRCLDTNN 158 Query: 233 -----------RSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLI 278 + + YL + LS A LI Sbjct: 159 FEPFMRQTLQDFNLGSRKQIGEYLIDFGWKPERFTPTGQPIVDEKTLSAITHIHEA-KLI 217 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + L I ++++ E V DGR+ G + GA TGR + +P Sbjct: 218 ADFLLLQKR-IAQVDSWVEGVQEDGRVHGFVIPNGA-ITGRMTHRNPNVAQVP------- 268 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 R+C G L+ D +G+E R+LA ++ Sbjct: 269 ----------------AVYSPYGKECRACWTVEEGNVLIGVDASGLEIRMLAHYMNDEE- 311 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 E R K AL Y G + ++ + Sbjct: 312 --------YTNEILNGDIHTANQKLAKLESRDKAKTFIYALMYGAGDEKLGSV-----VG 358 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 F++ +S + + L+G Sbjct: 359 GSTSDGKRARQYFFDNKPTFKS-LRDRVQRASALDYVEHLVG 399 >gi|283969442|gb|ADB54454.1| DNA polymerase I [Leptospira kirschneri serovar Grippotyphosa] Length = 144 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+ +L +E + L+ +I + G + T L+ LF + +V + Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKT 60 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + +L+ + ++ L + V+ GR+ + Sbjct: 61 QTGFSTDHEVLEELIGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338 A TGR S QN+P ++R Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144 >gi|33322851|gb|AAQ07161.1|AF496471_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis] Length = 95 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 + +Q + DI+ M N K +V+ VHDE++ + P ++ + S Sbjct: 10 AINSPIQGSAADIMKIAMINVQKKLDELGLKTKMVVQVHDELIFDVPADELETIXKIVPS 69 Query: 650 LMTKNPSWAKGLPLKAE-GYEAKRY 673 +M +PL A+ G+ Y Sbjct: 70 VMQAAVK--LDVPLVADAGWGHDWY 92 >gi|115475033|ref|NP_001061113.1| Os08g0175600 [Oryza sativa Japonica Group] gi|113623082|dbj|BAF23027.1| Os08g0175600 [Oryza sativa Japonica Group] Length = 570 Score = 99.8 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 60/295 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA---------WDDEPVKLW-DRTEQSA-M 53 D E + + + + + + + +W D + + Sbjct: 280 ACDTE-VANIDVKEETP---VGHGEVICFSIYSGNSDGEADFGNGKTCIWVDVLDGGRDV 335 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLP------ 106 + + D ++ V HN F+ + + I + T LAR Sbjct: 336 LMEFAPFFEDPSIKKVWHNYSFDSHVIENC---GIKVAGFHADTMHLARLWDSSRRADGG 392 Query: 107 SSLKNACLALNFSEHLTKM--EEGK-ALIARFCKG-------SIDSPPYDCTRANHVQAW 156 SL+ + K + GK ++ F + + + + + Sbjct: 393 YSLEGLTNDHRIMNAVLKDIHKTGKVSMKTIFGRKNVRKNGSEGKTISIEPVKKLQREDR 452 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GER---------------DLWL----LDQTIND 196 +L+ Y D +T +L++ L + E + W L + Sbjct: 453 ELWICYSSLDSMSTLKLYESLKNKLEAKEWIFDGCPRGTMYDFYEEYWRPFGALLVKMET 512 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL-----TDGIIRSSRQTYALRMYLF 246 G +D + ++++ ERK + K D + +R F Sbjct: 513 EGMFVDRAYLSEIEKTAVVERKLAADKFRKWASKHCPDAKYMNVNSDNQIRQLFF 567 >gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli] gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 5/119 (4%) Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ E Sbjct: 1 FIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSE 60 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 QR K + L Y L++ + FE + + + Sbjct: 61 QRRSAKAINFGLIYGMS-----AFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTR 114 >gi|260827865|ref|XP_002608884.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae] gi|229294238|gb|EEN64894.1| hypothetical protein BRAFLDRAFT_241579 [Branchiostoma floridae] Length = 196 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 46/204 (22%) Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + + A + + ++ + GV + E + Sbjct: 21 YSIMYGVGPEKLATYLNVSAAESKGFISSFLRRFPGVSRFTHKCKEECKAKGHVRTILKR 80 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 R+ ++K +L + Q R+ Sbjct: 81 WRLI--------------------------PNIKSPNFFLRS---QAERQA------VNF 105 Query: 601 IVQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS-LM-T 652 +VQ + DI M + G +++ +HDE+V E D SV + +M + Sbjct: 106 VVQGSAADICKLAMILVGKRLAEEGLKAKLLIQLHDELVFEVADEEVDSVKGVVRDIMQS 165 Query: 653 KNP---SWAKGLPLKAEGYEAKRY 673 +PL+ K + Sbjct: 166 DALLGGQIKLQVPLRVSVSVGKSW 189 >gi|168037310|ref|XP_001771147.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677527|gb|EDQ63996.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1042 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 37/354 (10%), Positives = 91/354 (25%), Gaps = 70/354 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYA------WDDEPVK-LWD-RTEQSAMPSD 56 D E + IT + + D + D + Sbjct: 635 ACDTEVT-EIDVKNESP---VGHGRITCFSIYCGPTADFGDGKNRLWIDVLDGGEDVLKV 690 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGL-------PSS 108 +Y ++ V HN F++ + + I + + T LAR S Sbjct: 691 FKRYFESPSIKKVWHNYSFDKHVLGRH---GIHPQGFHADTIHLARLYDSARRGAKGGYS 747 Query: 109 LKNACL-------ALNFSE----------HLTKMEEGKALIARFCKGSI-DSPPYDCTRA 150 L+ + S K GKA + + + P Sbjct: 748 LEVLSADEKVMDGYIRHSTEVDESVLAGKKSMKELFGKANLKKDGTPGKIKTIPPVHELQ 807 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL--------------------IPLSDGERDLW-L 189 + + Y D T LF L + + Sbjct: 808 RDEELRDAWIYYSTFDAVCTWRLFLSLQQKLSSTPWNVADLKKKGSMYDFYEKYWRPFGE 867 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERK----KLDEDIVKLTDG-IIRSSRQTYALRMY 244 + + G +D + + ++++ +++ + + K + +R + Sbjct: 868 VLVQMEADGMLVDCNHLATVEKVAKAQQEISVSRFRKWAAKYCADAAQMNVGSDAQIRQF 927 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 L+ G + + + ++ + + + + + ++ L+ Sbjct: 928 LY---GGTANRKDKDQVLPMERVFSVPNTDGFIEEGKKVAKKTKPIVISGLANF 978 >gi|283969411|gb|ADB54439.1| DNA polymerase I [Leptospira interrogans serovar Pyrogenes] Length = 144 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D+ +L +E + L+ +I + G + T L+ LF + +V + Sbjct: 2 GIALDVPYFEELARDFDREIRHLESEIHRQAGGPF-NIASTKELQKILFDNLKLRIVKKN 60 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYG 313 + T +L + +L+ + ++ L + V+ GR+ + Sbjct: 61 QTGFSTDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTI 120 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEE 338 A TGR S QN+P ++R Sbjct: 121 A-ATGRLSSTDPNLQNIPIRDREGR 144 >gi|221501798|gb|EEE27554.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 932 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 52/525 (9%), Positives = 129/525 (24%), Gaps = 73/525 (13%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + PL E + L ++ G I +L+ + +++++ ++ Sbjct: 435 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 494 Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----------------DMSEGTLKSILSHSNITQL 273 L LF + L ++ T + +L Sbjct: 495 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 554 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI N + + L + + S + + Sbjct: 555 VVPLIQNFRSLAKLRSTYLESTAALSLS----------------SSCALSAPEGAPFKVA 598 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + +T + + ET G + +C A D + + Sbjct: 599 FKLYDREEETCEPASDSETQTGEEGGKASDTHTCF-AD-----AARDYPALYPTKHPRVF 652 Query: 394 GEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + ++ G + +A Y Sbjct: 653 TRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVRE 712 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + H ++ + L R Sbjct: 713 KSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKE-LRDKVKVTCLALIYGSGTCTIARQ 771 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + ++ A + V++ R ++ + + D + + RR + Sbjct: 772 MN---------ISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRYVPE 822 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------- 622 K + S++ +L + +Q + DI+ M Sbjct: 823 AKSNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALP 873 Query: 623 -DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK-GLPLKA 665 ++L+VHDE+V + + + + +PL Sbjct: 874 PRLLLSVHDELVLHCSLSHLAPLSKMIK--SSLTENMPVDVPLDV 916 >gi|221480621|gb|EEE19073.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 935 Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 52/525 (9%), Positives = 129/525 (24%), Gaps = 73/525 (13%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + PL E + L ++ G I +L+ + +++++ ++ Sbjct: 438 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 497 Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----------------DMSEGTLKSILSHSNITQL 273 L LF + L ++ T + +L Sbjct: 498 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 557 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI N + + L + S + + + Sbjct: 558 VVPLIQNFRSLAKLRSTYLES----------------TAALSLSSSCALSAPEGAPFKVA 601 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + +T + + ET G + +C A D + + Sbjct: 602 FKLYDREEETCEPASDSETQTGEEGGKASDTHTCF-AD-----AARDYPALYPTKHPRVF 655 Query: 394 GEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + ++ G + +A Y Sbjct: 656 TRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGE 715 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + H ++ + L R Sbjct: 716 KSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKE-LRDKVKVTCLALIYGSGTCTIARQ 774 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + ++ A + V++ R ++ + + D + + RR + Sbjct: 775 MN---------ISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRYVPE 825 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------- 622 K + S++ +L + +Q + DI+ M Sbjct: 826 AKSNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALP 876 Query: 623 -DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK-GLPLKA 665 ++L+VHDE+V + + + + +PL Sbjct: 877 PRLLLSVHDELVLHCSLSHLAPLSKMIK--SSLTENMPVDVPLDV 919 >gi|237845437|ref|XP_002372016.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211969680|gb|EEB04876.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 938 Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 52/525 (9%), Positives = 129/525 (24%), Gaps = 73/525 (13%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + PL E + L ++ G I +L+ + +++++ ++ Sbjct: 441 LRTHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDAALVAVEKEVNRVAGT 500 Query: 231 IIRSSRQTYALRMYLFLITGIDLV-----------------DMSEGTLKSILSHSNITQL 273 L LF + L ++ T + +L Sbjct: 501 SCVQVASPLQLSSLLFDHLALPLPARAMAVRGSRPRKAAKKTLARSTAEEVLQEIVDLHP 560 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 LI N + + L + S + + + Sbjct: 561 VVPLIQNFRSLAKLRSTYLES----------------TAALSLSSSCALSAPEGAPFKVA 604 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + +T + + ET G + +C A D + + Sbjct: 605 FKLYDREEETCEPASDSETQTGEEGGKASDTHTCF-AD-----AARDYPALYPTKHPRVF 658 Query: 394 GEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + + + ++ G + +A Y Sbjct: 659 TRWNQTRTVTGRLSSSYPNLQNIPKAVNCREAFRDDVQDGSAVVVAADYAQIEMRLLVGE 718 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + H ++ + L R Sbjct: 719 KSFSSLVHTRCAPIDLYREMASLYAEIPSHEVTKE-LRDKVKVTCLALIYGSGTCTIARQ 777 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + ++ A + V++ R ++ + + D + + RR + Sbjct: 778 MN---------ISLAAASAFRSKFLFVFPDVSHFIRSIIAKGREDGFVTTLTGRRRYVPE 828 Query: 573 VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------- 622 K + S++ +L + +Q + DI+ M Sbjct: 829 AKSNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWAPDALP 879 Query: 623 -DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK-GLPLKA 665 ++L+VHDE+V + + + + +PL Sbjct: 880 PRLLLSVHDELVLHCSLSHLAPLSKMIK--SSLTENMPVDVPLDV 922 >gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] Length = 585 Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 63/430 (14%), Positives = 105/430 (24%), Gaps = 128/430 (29%) Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L + D + L L +G+D+ S+ L+ A Sbjct: 220 LEALAAQVRDALDVPTLNPDSQPDLLRALR-RSGLDVTSTSKWELQ------RSEHPAVA 272 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + +DGR R G TGRW+ LP+ Sbjct: 273 PLLEYKKLYRLLSANGWAWMDQWVTDGRFRAEWVPGGV-VTGRWATRGGGALQLPKG--- 328 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +RS + A +G LV+AD A +E R+LA ++G+D Sbjct: 329 ---------------------------IRSAVRADDGWLLVIADAAQLEPRILAAMSGDD 361 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + A A G+ A + RA KV LA Y Sbjct: 362 AMVAAGARGDLYAGLVEAGVV---------DTRAHAKVAMLAALYGATTG---------- 402 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + +A V +G + +AW Sbjct: 403 ------QAAMLVPRLARAYPRAVGLVDAAARVGENGGVVSTWLGRSSVPPGEAWH----- 451 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + Sbjct: 452 ----------AAQSAASAPDAT----------------------------------PDDE 467 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY---------DIVLT 627 R R +G +VQ + + M + + Sbjct: 468 RRAR-------SRARDWGRFTRNFVVQGTAAEWALCWMAALRRRLASLEGDAGVPRLAFF 520 Query: 628 VHDEIVSETP 637 +HDE++ TP Sbjct: 521 LHDELIVHTP 530 >gi|302529171|ref|ZP_07281513.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302438066|gb|EFL09882.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length = 566 Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 62/438 (14%), Positives = 110/438 (25%), Gaps = 112/438 (25%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L I G + + ++ L GI++ + +L + +A Sbjct: 205 KALVDLAAKISAALGGRPVNPDSSASVVRAL-AREGIEVPAARK----YLLQDIDHPAVA 259 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L S + +DGR R G +GRW+ +PR Sbjct: 260 P--LLEYKELSRLHSANGWAWLDEWVTDGRFRPHYV-VGGVVSGRWATRGGGALQIPR-- 314 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +RSC A G KLVVAD A +E RVL ++ Sbjct: 315 ----------------------------ALRSCASADPGWKLVVADGAQLEPRVLTALS- 345 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 G + +A+ Sbjct: 346 -------------------------------------------------GDRRLAEVAAA 356 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 L + T A+ G + R + Sbjct: 357 TDLYARLAEALFSGTRYVPLRPGDTRDDRSRAKIAMLSAMYGGTSG-EAGPLLALLRQRF 415 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + A + G + +R P PS+ + Sbjct: 416 PDAVSY---VERAAA-AGERGERVRSRLGRTSPA--------------PSAAWRALTGGL 457 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDE 631 + T + R ++G +VQA + D+ + +V +HDE Sbjct: 458 TEDEATETRARRASR--SWGRFTRNFVVQASAADLTAVLLATLRGRLPDPAHLVFFLHDE 515 Query: 632 IVSETPDTPYFSVGTLCS 649 ++ P V + Sbjct: 516 VIVHAPAELADEVAEIVE 533 >gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2] Length = 324 Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 246 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 305 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 306 AWDLPLSANGFETYRYRK 323 >gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort] gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort] Length = 1067 Score = 98.2 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 47/506 (9%), Positives = 108/506 (21%), Gaps = 115/506 (22%) Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLS------ 181 + + + +L Y D +A R ++ +L + Sbjct: 462 NKYKNVKDVINDVDGNSFNYDWIPLELMHPYASGDTDACRRIYCDVINKLKEQNRPKALE 521 Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT---------- 228 L I G D + + + + + E K+++ + Sbjct: 522 LLTKSYPRLTRTLARIQSNGMYTDTEYLYMIDDKYSNELDKIEQKLRSHWVIKEFEDTRY 581 Query: 229 -------------------------DGIIRS------SRQTYALRMYLF----------- 246 ++ LF Sbjct: 582 DLYMAGVEEFESNPPKERNKSITQYRDKFKNGGWKFKPSSGAHKGEVLFSILGISLPYEK 641 Query: 247 --------------LITGIDLVDMSEGTLKSIL---SHSNITQLAKDLILNRLASSGSAI 289 + ++ T+ I+ L+ Sbjct: 642 EFVKDKPFTKGVKEDKLTWEDYKTNKSTIDYIIDNIELKKDCIDVVVLMKKYAELQTKRN 701 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L V+ + + + R S Q LP Sbjct: 702 SFTKKLPNLVNKETSTLHGNFNSTGTASARLSSSAPNLQQLPSHT--------------- 746 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 V+ + + D + IE +++ + +++F GEDI Sbjct: 747 ---SDVNKFDYHYPVKRAFKSRYKNGIMTELDFSAIEMKIIGLYTKDPEMLESFLKGEDI 803 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + +T + +N P++ ++ E+R K + + Y F ++ Sbjct: 804 HKSTASIVYNKPVEDITAEERQNTKKVNFGIAYGESPFSFSGKN-----NMTVEEAEEIF 858 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 F ++ D + + + G + + K Sbjct: 859 NKYFNTKPSVKNSIDATHDFVQKHGYVEAMQGHQRFI---------RDAQSSDKKKRNQA 909 Query: 529 ACVVQEGGSISARRVANVPRLVMRRH 554 S L Sbjct: 910 LRQSFNTIIQSTAGYLTNMALTFIDD 935 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 31/211 (14%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-----------TEQSAMPS 55 D+ET S P K + + +W + + + + Sbjct: 215 DLETNSLSPEKKGSKP--------LVLSMSWKNGQGVTIPLYKSDFTWENGQQDIDEILA 266 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L +++ + + VAHN ++ + T V + + Sbjct: 267 MLKEWVASKEDIKVAHNGQYDINFLMSSQNFT-EFNEHQDTKV-GWYLAVTQ---EEAES 321 Query: 116 LNFSEHLTK-------MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L S+ + + + F + + + EY + + Sbjct: 322 LKLSDISYEVTDMGGYDKPLENFKKWFIQDLLKYLSDALNERKKENKKPVKKEYDIKAPD 381 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 + +L D + L + ++ Y Sbjct: 382 YDSWIKGKLQEPVDLDNHDIKLKVSEEEKVY 412 >gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 570 Score = 97.9 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 77/505 (15%), Positives = 128/505 (25%), Gaps = 140/505 (27%) Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ------- 215 ++D A RL L E L+ + G + L + Sbjct: 150 AQQDAVAASANPGRLRLLLAAESVGALIAAEMRFAGLPYSAERHDALLTDLLGPRPAYGG 209 Query: 216 --ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + L I D + AL L G+ + S L+ + Sbjct: 210 PVVLEDLAAQIRAALDSPDLNPDSPPALLRAL-QRAGLRVSSTSSWELREL------DHP 262 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + +L+ + + E+ DGR R G TGRW+ LP+ Sbjct: 263 VIEPLLHYKKLARLLTANGWSWLESWVQDGRFRPDYVPGGV-VTGRWATRGGSALQLPK- 320 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R ++A G KLVVAD A +E R+L +A Sbjct: 321 -----------------------------QLRGAVVADPGWKLVVADAAQLEPRILTGLA 351 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + A + + + +RA KV L Y Sbjct: 352 QDQRMAAAGRG---------QDLYTGIVSAGAVTERAQAKVAMLGAMYGATTGE------ 396 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G + +A+ Sbjct: 397 ---------------------------------------------SGRLMPRLARAFPRA 411 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 L E A + G ++++ + PR S+ S Sbjct: 412 V--------RLVEEAARAGERGEAVTSHLGRSSPRP------GGSWQETQSAASTAESTP 457 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY----------- 622 + R +G +VQA + + M Sbjct: 458 ADERRARAQ-------ARDWGRFTRNFVVQASAAEWALCWMAELRNRLTALAPGRPLTEA 510 Query: 623 -DIVLTVHDEIVSETPDTPYFSVGT 646 +V +HDE++ TPD +VG Sbjct: 511 PHLVYFLHDEVIVHTPDALAEAVGE 535 >gi|218506492|ref|ZP_03504370.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 156 Score = 97.9 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 48/169 (28%), Gaps = 30/169 (17%) Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + K G + Y D + T L Sbjct: 4 KFLGHTPIPYKDVAGSG---------------RANVTFDLVDIDRATHYAAEDADVTLRL 48 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ER L + + RG +D ++ +L +AQ +L+++ Sbjct: 49 WLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLEDE 108 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHS 268 I G + L LF G+ ++ T S+L Sbjct: 109 IY-TLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDL 156 >gi|322504483|emb|CAM37559.2| putative mitochondrial DNA polymerase I protein C [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1628 Score = 97.5 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 117/417 (28%), Gaps = 106/417 (25%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + + L AV R+ G L + TGR S QN+P++ Sbjct: 1280 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1338 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391 E +R I++ G + ++ AD + +E VLA Sbjct: 1339 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1370 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + + ++ + D + + P + + KV Sbjct: 1371 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1409 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + S + L + + A Sbjct: 1410 ------------KKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEE 1457 Query: 512 AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 ++ + + + + + G +++ ++ N+ R+VM +V P+ + Sbjct: 1458 HHYKELSKYYSLVTRCVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEPMYYFVV-PTGSK 1516 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI---LCEGMKN------AT 618 ++ + +L VQ ++ +I +C + Sbjct: 1517 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNY 1559 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAE 666 +V TVHD + + + V L +M P +P K E Sbjct: 1560 GEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVE 1616 >gi|154334253|ref|XP_001563378.1| mitochondrial DNA polymerase I protein C [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1628 Score = 97.5 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 117/417 (28%), Gaps = 106/417 (25%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + + L AV R+ G L + TGR S QN+P++ Sbjct: 1280 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1338 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391 E +R I++ G + ++ AD + +E VLA Sbjct: 1339 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1370 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + + ++ + D + + P + + KV Sbjct: 1371 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1409 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + S + L + + A Sbjct: 1410 ------------KKDPQYIQLRQQAKVFSFQRQYGAGISTISTTTGLTEQEVDRLIVAEE 1457 Query: 512 AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 ++ + + + + + G +++ ++ N+ R+VM +V P+ + Sbjct: 1458 HHYKELSKYYSLVTRCVEAGADRLLRLRTLDTSCWNTNIRRVVMLTEPMYYFVV-PTGSK 1516 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI---LCEGMKN------AT 618 ++ + +L VQ ++ +I +C + Sbjct: 1517 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYQKRNY 1559 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAE 666 +V TVHD + + + V L +M P +P K E Sbjct: 1560 GEKAFLVNTVHDCVWVDAHKSVADEVRADLARIMGHTQETIATLWPDMKLDVPFKVE 1616 >gi|289976608|gb|ADD21653.1| DNA polymerase [Caulobacter phage Cd1] Length = 797 Score = 97.5 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 49/393 (12%), Positives = 106/393 (26%), Gaps = 84/393 (21%) Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + V +DG + L + ++ T R+S QNLP+ +S Sbjct: 422 GMLTLVQADGIIHHMLN-HTSTVTARFSSSNPNLQNLPKDGKS----------------- 463 Query: 354 ADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 V+S I+ G K++ +D +E + A + I +G D++ Sbjct: 464 ---------LVKSVFISRFGPEGKVIQSDFTALEVYIQAILTDCRQLILDLKDGLDMHCV 514 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 ++A P ++ + + VK ST Sbjct: 515 RVSQAEGIPYEEAYRLCVV---------------------------------EKVKEWST 541 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + S A + + + +A ++ + + ++ LT+ Sbjct: 542 KRTKAKIFSFQRAYGAGAALIAESTGMAREEVDALIEAENTRYPEIEKFYERLTKKIMAN 601 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRE 590 + R+ P + Y + + A+ Sbjct: 602 SVPTNKFAQHPDLPHLTCNFRKS----TYQTPDGKLYSYRESPAPEFLAKAPASRGGCTT 657 Query: 591 RTYGGKLTENIVQAISRDILCEGM-KNATKNGYD--------IVLTVHDEIVSETPDT-P 640 ++ +VQ + M +V VHD + ++ Sbjct: 658 SFSPTEIKNYVVQGGGGEWAKAAMWLAIRAFYARGNFGGRGLLVNQVHDALYADAAKEVA 717 Query: 641 YFSVGTLCSLMTKNPS-------WAKGLPLKAE 666 L + M W +P+ ++ Sbjct: 718 LEVAALLHACMEAASEFMEYYFDWEVKVPVPSD 750 Score = 41.2 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 20/270 (7%), Positives = 57/270 (21%), Gaps = 29/270 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MS + D+ET + + + + + E + + ++ Sbjct: 1 MSYVIWDLETTIRTSFKRKANPFDRDNF-VVMQGFKRFGEKIVGEYFGKNPPPSDWFIKL 59 Query: 61 LRDET-----VMCVAHNSLFERI----------LFKKTLGIDIPSKRWICTSVLARTNG- 104 + M V N F+ + + + + + Sbjct: 60 VEPPAPLARPKMLVGLNIKFDLLYALRDPDNHAAWMRYVA---AGGTVWDCQLAEYLLEG 116 Query: 105 -----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 S+ + + + + + Sbjct: 117 MAPTEHMLSMDEIAPRYG-GNIKFDEVKALWEAGVSTEDIDPALLRRYLCGTETEHGDIG 175 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + R + L + G +D++L + E +A + Sbjct: 176 NTEVIFRGQLARAKASGQVKSIMLNMGSLLCTTEMELNGMAVDVELGRQQAEQLAIDLAA 235 Query: 220 LDEDIVKLTDGIIR---SSRQTYALRMYLF 246 L ++ + +F Sbjct: 236 LTVELNAFLPSNLPFDFKWSSRVQKSALIF 265 >gi|70949566|ref|XP_744181.1| DNA polymerase 1 [Plasmodium chabaudi chabaudi] gi|56524028|emb|CAH74320.1| DNA polymerase 1, putative [Plasmodium chabaudi chabaudi] Length = 1069 Score = 97.5 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 45/376 (11%), Positives = 102/376 (27%), Gaps = 70/376 (18%) Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 + I S + L + + + ++ GAS TGR S Sbjct: 674 EKEKENIKQIISNIKLYRESKKLFQNYIENLPKHIQKNTNKIHCNFNQLGAS-TGRLSCD 732 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+ + R L +T + L+ D Sbjct: 733 QPNLQNIHSKFRCTISLKNDDIKPISVKTKHVKNKSVNQN------------LLTFDYKQ 780 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E V+A+++ + +K N + T + V+KE R + K + + Y Sbjct: 781 MELFVMAYLSFDSQLLKMLNNSDVFVETAKVLF---NTNDVTKELRRMTKTVIYGILYGQ 837 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + + F + + LIG Sbjct: 838 SEN-----GLAKNLLVSENFAKSLIDNFFNFYPNVFKFMQKQKILVKNINSVYTLIGRKR 892 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 LV + K++ + + + A +++ + + +++ + I Sbjct: 893 -LVDPTIKNKYR--ISMNTPIQGCAADIMK-------FALLSCHKILSYFDNPNQDIDTF 942 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 ++ ++ Y N + Sbjct: 943 --LKMNNINISLLKKYKNY---------------------------IK---------STK 964 Query: 624 IVLTVHDEIVSETPDT 639 ++L +HDE++ + + Sbjct: 965 LILQIHDELLFQCDEN 980 >gi|261329543|emb|CBH12525.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei gambiense DAL972] Length = 1649 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 118/401 (29%), Gaps = 98/401 (24%) Query: 294 TLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L AV + + R +F + + TGR S QN+P+++ I+++ + R Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGR--- 1375 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 ++ AD + +E VLA ++ + ++ + D + Sbjct: 1376 -----------------------MIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLR 1412 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + P + V + + + + L Sbjct: 1413 VSLMTKEPYEDVIHKVKQLKDPHYIQL--------------------------------- 1439 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + S A L T + A ++ + + ++ +T+ Sbjct: 1440 RQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYYRLVTDCVEAGA 1499 Query: 533 QEGGSISARRVANVPRLVMRR---HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + + P + R + + V+P+ + ++ K Sbjct: 1500 DRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKFDFTKDKKAV------------ 1547 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNA---------TKNGYDIVLTVHDEIVSETPDTP 640 +L VQ ++ +I+ + +V TVHD + + ++ Sbjct: 1548 -----PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHESV 1602 Query: 641 YFS-VGTLCSLMTKN--------PSWAKGLPLKAEGYEAKR 672 V + ++M+ P +P KAE + Sbjct: 1603 ADEVVDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643 >gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like protein C [Trypanosoma brucei] Length = 1649 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 118/401 (29%), Gaps = 98/401 (24%) Query: 294 TLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L AV + + R +F + + TGR S QN+P+++ I+++ + R Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGR--- 1375 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 ++ AD + +E VLA ++ + ++ + D + Sbjct: 1376 -----------------------MIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLR 1412 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + P + V + + + + L Sbjct: 1413 VSLMTKEPYEDVIHKVKQLKDPHYIQL--------------------------------- 1439 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + S A L T + A ++ + + ++ +T+ Sbjct: 1440 RQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYYRLVTDCVEAGA 1499 Query: 533 QEGGSISARRVANVPRLVMRR---HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + + P + R + + V+P+ + ++ K Sbjct: 1500 DRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKFDFTKDKKAV------------ 1547 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNA---------TKNGYDIVLTVHDEIVSETPDTP 640 +L VQ ++ +I+ + +V TVHD + + ++ Sbjct: 1548 -----PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHESV 1602 Query: 641 YFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYEAKR 672 V + ++M+ P +P KAE + Sbjct: 1603 ADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643 >gi|72391456|ref|XP_846022.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei TREU927] gi|62176585|gb|AAX70690.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei] gi|70802558|gb|AAZ12463.1| mitochondrial DNA polymerase I protein C [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1649 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 118/401 (29%), Gaps = 98/401 (24%) Query: 294 TLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L AV + + R +F + + TGR S QN+P+++ I+++ + R Sbjct: 1319 ALFRAVLPECKNRVHGEFCHVVTATGRLSSQSPNLQNIPKEDLRCLIVSRFGRRAGR--- 1375 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 ++ AD + +E VLA ++ + ++ + D + Sbjct: 1376 -----------------------MIEADYSQLEVVVLAALSRDARMLQELNDNVDFHCLR 1412 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + P + V + + + + L Sbjct: 1413 VSLMTKEPYEDVIHKVKQVKDPHYIQL--------------------------------- 1439 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + S A L T + A ++ + + ++ +T+ Sbjct: 1440 RQQAKTFSFQRQYGAGTSTIATTTGLSETEVVRLIAAEEQHYKDLGRYYRLVTDCVEAGA 1499 Query: 533 QEGGSISARRVANVPRLVMRR---HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + + P + R + + V+P+ + ++ K Sbjct: 1500 DRLLQLRTLDATSWPPTMRRMVLLTEPMHYFVVPTGSKFDFTKDKKAV------------ 1547 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNA---------TKNGYDIVLTVHDEIVSETPDTP 640 +L VQ ++ +I+ + +V TVHD + + ++ Sbjct: 1548 -----PRLKNYPVQGLAGEIVQIMCGKIIRRFYAKRNYNDKAFLVNTVHDCVWIDAHESV 1602 Query: 641 YFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYEAKR 672 V + ++M+ P +P KAE + Sbjct: 1603 ADEVMDDVSAIMSSTSEVISSLWPGVKLDVPFKAEIHIGPS 1643 >gi|157168417|ref|YP_001456774.1| gp44, DNA polymerase I [Corynebacterium phage BFK20] gi|74268849|emb|CAJ29727.1| gp44, DNA polymerase I [Corynebacterium phage BFK20] Length = 634 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 77/545 (14%), Positives = 134/545 (24%), Gaps = 103/545 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDLL 58 S + +DIE G+ + +W + + Sbjct: 61 STVAVDIE--------AAGLAH--ASFDMRCITLSWYTGTGSEAMTVLIDPRDPHEASFA 110 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTSVLARTN----GLPSSLKNAC 113 + + V HN ++ + + + + T VLAR L++ Sbjct: 111 RRILTTAPALVFHNGAYDVPPLVQHGVMTLDHIVKVWDTIVLARMAYPDKDTSKGLESLA 170 Query: 114 LA---LNFSEH--LTK---MEEGKALIARFCKGSIDSPPYDC--------------TRAN 151 L K + G F ID PY N Sbjct: 171 GRSDTLGMPPSPGSIKNSYLLAGYKKSDGFMHADIDMLPYRIGAMSDTPITLRMLDKLYN 230 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + W + V T + RLI L I G R+D + + E Sbjct: 231 NCVQWLTSSTFEGETVPRTAQDAHRLIEREQITNRAMLRRSAI---GLRVDREYLHTYSE 287 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI------DLVDMSEGTLKSIL 265 ER+ I K + + YL G+ K Sbjct: 288 QTLAEREHAANLIEKTIARE--AVGNGLHVVNYL-DTQGLIPASWPRTPTGRLKADKQAF 344 Query: 266 SHSNITQLAKDLILNRLASSGS--AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + LI + + + L GR+ + GAS TGR + Sbjct: 345 ESLDHP-----LIDAHRKVADTDHILDYLGKTDAMAQITGRVHPQVGILGASATGRMAYS 399 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 + Q P + R + + G V D + Sbjct: 400 QPELQQFPSEARKIILWDK----------------------------PEG--AVSIDWSS 429 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E ++A A + + F + +R KV+ LA Y Sbjct: 430 VEPVIMANCARDTEFLAGFNHHGADLYAPIT---------SQGIERKTAKVVMLAAMYGQ 480 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G++ L + FE + ++ +Q + G Sbjct: 481 GSRSLAE-----RLGVSVDEAKSLRKKVFEPMPRTDAFMKAIQATSEQHGRIMTADGRML 535 Query: 504 ELVKK 508 + Sbjct: 536 TIPTD 540 >gi|146087835|ref|XP_001465919.1| DNA polymerase theta (polymerase domain only) [Leishmania infantum JPCM5] gi|134070020|emb|CAM68350.1| putative DNA polymerase theta (polymerase domain only) [Leishmania infantum JPCM5] Length = 1169 Score = 97.1 bits (240), Expect = 8e-18, Method: Composition-based stats. Identities = 60/459 (13%), Positives = 108/459 (23%), Gaps = 131/459 (28%) Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR---------------TGR 319 + + R + + L ++ + DG SR TGR Sbjct: 755 RLHDMFRKVADKLHVCVLEKPRDSAAEDGPAVSDASTAQVSRVCYSMHPNWVLHNKSTGR 814 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD------------------------ 355 + QNLP+Q + A + D Sbjct: 815 IFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLA 874 Query: 356 ---------------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R A G L D +E R+LA ++G+ + Sbjct: 875 EAAAVDQASSAQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQE 934 Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + D+ A P ID V +QR KV+ L Y G + + Sbjct: 935 HLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEF 994 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 Q A A + + + + + Sbjct: 995 ATSEQQQH----------------------RGEAASSAPAPMAARDLLRRFHRVYPRIEN 1032 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 ++ + + S R+ Sbjct: 1033 YLRETRQEALR--------------------------SFAVETLSGRK--------SLIA 1058 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----------KNGYDIVLTV 628 A + R VQ + D+L M+ +V+++ Sbjct: 1059 EKDANRRRQRAIAQA-------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSI 1111 Query: 629 HDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPLKA 665 HDE+V P V + ++ + +PL Sbjct: 1112 HDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPLPV 1150 >gi|156101137|ref|XP_001616262.1| DNA polymerase 1 [Plasmodium vivax SaI-1] gi|148805136|gb|EDL46535.1| DNA polymerase 1, putative [Plasmodium vivax] Length = 1221 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 47/381 (12%), Positives = 105/381 (27%), Gaps = 83/381 (21%) Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + S + L + + ++ GAS TGR S QN+ + R Sbjct: 795 VKLYRESKKLFQNYIENLPKFIQKETNKIHCNFNQIGAS-TGRLSCEQPNLQNIHSRFRC 853 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCI----------------------IASNGK 374 L + + R + +G+ Sbjct: 854 AVSLKGGEVGGEERGSGERGIANQCSANRGSVEVGGNNLTTAENPPPANFTCEGAPPDGE 913 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ D +E V+A+++ + +K +G+ T T +V+ E R + K Sbjct: 914 NLITFDYKQMELFVMAYLSFDVQLLKMLQSGDVFVETAKVLFNTT---QVTSELRRMTKT 970 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + + Y L + + + ++ F+ + + Sbjct: 971 VIYGILYGQTEN-----GLAKSLLISEGMASNLISNFFQVFPNVYRFMQMQKILLKHMNR 1025 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 LIG +++ + K++ + + + A V++ + + + Sbjct: 1026 VYTLIGRKR-VIEPTIKNKYR--ISMNTPIQGCAADVMK----FALLSCFCIMTHGWPQS 1078 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 R + I S+ L + + Sbjct: 1079 ARLLKINNVSAAVLEENKPFLKAT------------------------------------ 1102 Query: 615 KNATKNGYDIVLTVHDEIVSE 635 ++L VHDE++ E Sbjct: 1103 --------KLILQVHDELLFE 1115 >gi|154412700|ref|XP_001579382.1| DNA polymerase I family protein [Trichomonas vaginalis G3] gi|121913588|gb|EAY18396.1| DNA polymerase I family protein [Trichomonas vaginalis G3] Length = 709 Score = 97.1 bits (240), Expect = 9e-18, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 107/366 (29%), Gaps = 68/366 (18%) Query: 167 VEATRELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 ++ T ELF++ D E TI+ + +++DL+ + + I E K+ Sbjct: 285 IDKTLELFEKFTKDDKLYKWYKDIEMRHLRFMGTIHQKSFKLDLENMKFERYKIESELKE 344 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----------------S 263 + + I L+ + + + LF + S T + Sbjct: 345 ISDKIYGLSGCKF-NILSPFEVSEVLFEKMKLKSNKFSAQTKTIDSRHKNIKHREFAPTN 403 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L +I +LI + S L + + S+G L ++ TGR S Sbjct: 404 SLVLDDINHPIVELIKKFRSLSKLVSNWL-SFDQKSDSEGILHP-WILVLSTATGRISSV 461 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P S +R + K ++ D + Sbjct: 462 FPNLQNIPSFN-----------------------DEQSLNIRKFFLPPTKKTMISVDYSQ 498 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E R+LA ++ + + + AK + V+++ R K A Y Sbjct: 499 LELRILAHLSDDKKLKDLCNVDQGDIHSMIAKMI-FNKNNVTEDMRKEAKTNIYATIYGK 557 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + G+ + + ++ S + G Sbjct: 558 KVENMS------GISV------------IDIFQGIRSFITNTVIETQNKGFIKTFSGKYR 599 Query: 504 ELVKKA 509 L Sbjct: 600 FLPNIR 605 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 10/101 (9%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 + + + + + I S + +++ + + R Sbjct: 571 FQGIRSFITNTVIETQNKGFIKTFSGKYRFLPNIRCQKV---SDKMRDERIS------VN 621 Query: 600 NIVQAISRDILCEGMKNATKN-GYDIVLTVHDEIVSETPDT 639 I+Q + D + + N K ++ +HDE + ET + Sbjct: 622 TIIQGTAADFVKFALINVIKQTNLIPIIQIHDEWIFETDEE 662 >gi|221066661|ref|ZP_03542766.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1] gi|220711684|gb|EED67052.1| DNA-directed DNA polymerase [Comamonas testosteroni KF-1] Length = 766 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 55/464 (11%), Positives = 100/464 (21%), Gaps = 142/464 (30%) Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 G+ + + + +DL R + + L +VS +GRL Sbjct: 406 DNGLPSISL-KSLSNKGAIALPGIAAWRDLCDARRTLA-----SCDDLIASVSPNGRLHP 459 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR + +RS Sbjct: 460 LFGYD--TVTGRLTAKRP------------------------------ASMAMDQRLRSA 487 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAG--------------------EDWKIKAFANGED 407 + A G ++ AD + IE R+ A A + A + Sbjct: 488 VTAPEGSVIISADYSQIELRIAACFAEKMRAGTGLPGMLATAFRTGVDPHLTTALQSVRQ 547 Query: 408 -----------IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHC 455 Y+ + +R K L Y F Sbjct: 548 RGDIDFTGNAAAYIAGLCDEERCELKSRLFVERDTAKAQNFGLLYGMKDSSFWEYGRLAY 607 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 GL + F+ + Sbjct: 608 GLTWTFEEAQAARDAWFKMY---------------------------------------P 628 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + L F+ +E + A + S R++ + Sbjct: 629 EIALLHDSYQSTFSAAAKETLFLKAHDGVFQTTTSRVVSGATL-----SGRKVTATSPFL 683 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD--IVLTVHDEIV 633 SY Q DI+ + + G +V VHDE+V Sbjct: 684 LLSY---------------------ACQGTGADIIISAIASMDH-GTRRHLVNVVHDELV 721 Query: 634 SETPDT-PYFSVGTLCSLM---TKNPSWAKGLPLKAEGYEAKRY 673 P++ + M +P + + Sbjct: 722 LCVPESCSQREAAEVRRAMLSAEDAVFAQYNIPASVDITVGNSW 765 >gi|77407374|ref|ZP_00784270.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77174018|gb|EAO76991.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 91 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%) Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 + +Q + DIL M N + ++L VHDEIV E P+ ++ L Sbjct: 6 AINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTK 65 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 M S +PL A+ + + Sbjct: 66 TMESAIS--LSVPLIADENAGETW 87 >gi|325115196|emb|CBZ50752.1| hypothetical protein NCLIV_012190 [Neospora caninum Liverpool] Length = 1235 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 56/403 (13%), Positives = 103/403 (25%), Gaps = 93/403 (23%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L R+ + TGR S QN+P+ + + T + + Sbjct: 881 YPALYPTKHP--RVFTRWNQT-RTVTGRLSSSYPNLQNIPKVMVLPSLSSLTSSSSSCSS 937 Query: 352 TIADPLGLASDC--------------VRSCII--ASNGK-KLVVADLAGIEARVLAWIAG 394 + S R +G +V AD A IE R+LA G Sbjct: 938 SSPSSDVSPSSPSSSRLRYTLPKTVNCREAFRDDVQDGSAVVVAADYAQIEMRLLAHFCG 997 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + A P D+ + I E+A Y T Sbjct: 998 KGPLQSLLTGRDTREARGSA-----PDDESETSKEPIDLYREMAALYAEIPPSQVTKEL- 1051 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D + L A + + A + + Sbjct: 1052 ------------------RDKVKVTCLALIYGSGTCTIARQMNISLAAASAFRSKFLFVF 1093 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 V + + + + + D + + RR + K Sbjct: 1094 PDVSHFIRSI--------------------------VAKGREDGFVTTLTGRRRYIPEAK 1127 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY-----------D 623 + S++ +L + +Q + DI+ M Sbjct: 1128 SNSSHVRALGERLS---------VNSCIQGSASDIMKIAMMRLQAELLSFPWDPHALPPR 1178 Query: 624 IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 ++L+VHDE+V + + +T+N +PL Sbjct: 1179 VLLSVHDELVMHCSLKHLQPLSKMIRKCLTENMP--VDVPLDV 1219 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 18/142 (12%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + PL E + L ++ G I +L+ + + +++++ + Sbjct: 674 LRCHQLVQPLLTQEIPMASLLALLDVTGIAIQPHCHEQLKSALDEALVAVEKEVNRTAGT 733 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMS------------------EGTLKSILSHSNITQ 272 L LF + L + T + IL Sbjct: 734 SSVQVSSPAQLSNLLFDHLALPLPARTFAAVRGNRPRRAAKRTLARSTAEEILQEIVDLH 793 Query: 273 LAKDLILNRLASSGSAILKLNT 294 LI N + + L + Sbjct: 794 PVVPLIQNFRSLAKLRSTYLES 815 >gi|322499407|emb|CBZ34480.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1171 Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 60/459 (13%), Positives = 107/459 (23%), Gaps = 131/459 (28%) Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR---------------TGR 319 + + R + + L ++ DG SR TGR Sbjct: 757 RLHDMFRKVADKLHVCVLEKPRDSAVEDGPAVSDASTAQVSRVCYSMHPNWVLHNKSTGR 816 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD------------------------ 355 + QNLP+Q + A + D Sbjct: 817 IFSALPNVQNLPKQPPRTTFPIHALSATPSRNSGGDESLRPYGYVDPPTEEDVDRWLSLA 876 Query: 356 ---------------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R A G L D +E R+LA ++G+ + Sbjct: 877 EAAAVDQASSVQFPLFPENPQWTLRHLYCAPPGCLLASFDFNQLELRLLAHLSGDAALQE 936 Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + D+ A P ID V +QR KV+ L Y G + + Sbjct: 937 HLSANVDVLALVTASVLRLPSIDHVRPQQRQAVKVIVYGLLYGMGPESMDVRIKKINEEF 996 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 Q A A + + + + + Sbjct: 997 ATSEQQQH----------------------RGEAASSAPAPMAARDLLRRFHRVYPRIEN 1034 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 ++ + + S R+ Sbjct: 1035 YLRETRQEALR--------------------------SFAVETLSGRK--------SLIA 1060 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-----------KNGYDIVLTV 628 A + R VQ + D+L M+ +V+++ Sbjct: 1061 EKDANRRRQRAIAQA-------VQGGAADVLHSAMRAVHQQRHSFLPYLPAAPLALVMSI 1113 Query: 629 HDEIVSETPDTPYFS-VGTLCSLMT-KNPSWAKGLPLKA 665 HDE+V P V + ++ + +PL Sbjct: 1114 HDELVYAVPRVAIEEVVRGVQRILEDQARVLRLAVPLPV 1152 >gi|213581474|ref|ZP_03363300.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 86 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 9/84 (10%) Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 +Q + DI+ M +++ VHDE+V E +V + Sbjct: 1 AINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQ 60 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRY 673 LM +PL E + + Sbjct: 61 LMENCTR--IDVPLLVEVGSGENW 82 >gi|32442283|gb|AAP82212.1| DNA polymerase [Podovirus SOG] Length = 409 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 64/462 (13%), Positives = 117/462 (25%), Gaps = 108/462 (23%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T VL+ SLK+ + L+ Y Sbjct: 1 DTLVLSSLFNPMRKGGHSLKSWGIRLD--------------------------EYKGEFN 34 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPL--------SDGERDLWLLDQTINDRGYRID 202 + Q + +YCK+DV+ T +++ L+ D E + + G+ +D Sbjct: 35 DWSQYSEEMKQYCKQDVKVTELVYQELLKEGSKFSQASIDLEHQVHAIMCEQEANGFLLD 94 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT---------------------------------- 228 +L ++ E +++ DI + Sbjct: 95 TNLAQEIYTTCLAETTRIERDIKEFMVPIAVPVKEVNLKYKKDGSIFANQLLEGCNVQGD 154 Query: 229 ----DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL-----KSILSHSNITQLAKDLIL 279 + + L G ++G L+ T L Sbjct: 155 YTKIMWEEFNLASQPQINKRL-NRLGWKPTVKTKGGDSYKICPENLATIPDTAPQAVKGL 213 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + + + DGR+ G + GA T R + N+P ++ Sbjct: 214 KKWKVLETRWKLASEWLQGSQVDGRVHGQVITPGA-VTHRAAHRGPNMANIPSVPHGKDG 272 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + + + R GK LV D AGI+ RVLA + Sbjct: 273 ILWKMDGM------------YAAECRQAFTVPEGKLLVGTDAAGIQLRVLAHYMNDPV-- 318 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + + FN + R K A G + L Sbjct: 319 -----YTEQVIDGDIHTFNMNALGKFCKDRPTAKTFIYAFLLGAGVGKIAEI-----LGC 368 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 N + +E + + L G Sbjct: 369 NAAQANKSMQNFYEALPTLKR-LKSEAARAASMGWMKGLDGR 409 >gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus] Length = 169 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 65/160 (40%) Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 L +RS A GK LV++D + IE R+ + G++ I+AF G D++ T Sbjct: 1 DPNLQNIPRELRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTA 60 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + ++VSKE+R + K + L Y AK A G+DL FE Sbjct: 61 SILLGKREEEVSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFE 120 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + ++ H ++ + EF + V + Sbjct: 121 YFVSFKNWHEKVKRELKEFKESRGYTLLGRKYVAHTFPDA 160 >gi|153799363|gb|ABS50441.1| DNA polymerase I [Enterococcus phage F4] Length = 299 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 74/271 (27%), Gaps = 38/271 (14%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVK--LWDRTEQSA------- 52 L +D ET G Y E I+ + + + + Sbjct: 20 YLAMDFETVGDN----GGTDMYRE--EISGFSLTYRYKGEIINGYVPMRHREEDGSPSHL 73 Query: 53 -------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + + + V HN+ F+ L K +LGI P T +L Sbjct: 74 NIANVKWAEEGIKRVFESDKAT-VWHNATFDMGLAKASLGIA-PRTPVHDTLILMHLLDE 131 Query: 105 --LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 LK LN + GK D + F Sbjct: 132 DLPSYQLKVLATRFLNIPSDTFEEMFGKNAK------FADIAVEIARWYAGKDTYVGFLL 185 Query: 162 YCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + + F ++ + + ER + + G+ I+++ V ++ E +++ Sbjct: 186 FEWQLNILNKPSFAKIKKVYERIERPCIMATFEMESEGFHINMEEVEVQRKESEAELEEI 245 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + + L L++ Sbjct: 246 SARLQARFGD--VNFSSPSQLLKLLYVDNDW 274 >gi|32442281|gb|AAP82211.1| DNA polymerase [Podovirus SOG] Length = 410 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 67/461 (14%), Positives = 112/461 (24%), Gaps = 107/461 (23%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T VL+ SLK L K D T Sbjct: 1 DTLVLSSLFDPQRKGGHSLKVWGERLG----DFKD--------------------DYTGG 36 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRID 202 + YCK+DV+ T L+ L+ + E + + G+ +D Sbjct: 37 F-EVYTEEMKAYCKQDVKVTELLYNTLLKEGEAFSQASINLEHMVHAIMCEQQANGFELD 95 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT---------------------------------- 228 DL ++ + +E +++ +I + Sbjct: 96 TDLAQEIYTVCLKETLRIETEIKEFMVPIAVPVKEVTIKRKKDGAIFANQLLEGCNVQGD 155 Query: 229 ----DGIIRSSRQTYALRMYLFLITGIDLVDMSEG-----TLKSILSHSNITQLAKDLIL 279 + + L G + ++ L+ L Sbjct: 156 YTKIMWEEFNLGSPTQINKRL-DKLGWNPTVKTKSGESYKICPENLATIPDDAPQAVKGL 214 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + E DGR+ GT+ GA T R + N+P Sbjct: 215 KAWKVLETRWKLAQEWLEKSQGDGRVHGTVITTGA-VTHRAAHRGPNMANIPS------- 266 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 N+ G+ + R G+ LV D AGI+ RVLA + Sbjct: 267 -----VPHNKDGIFWKMDGMYAAECRQVFKVPEGRLLVGTDAAGIQLRVLAHYMNDPV-- 319 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + + FN + R K A G + L Sbjct: 320 -----YTEQVIDGDIHTFNMNALGRHCKDRPTAKTFIYAFLLGAGVGKIAEI-----LGC 369 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 NV + +E + + L G Sbjct: 370 NGGQANVAMKNFYEALPTLKR-LKSEASRAASMGWLKGLDG 409 >gi|304654266|gb|EFM47658.1| PsRxL467 [Phytophthora sojae] Length = 471 Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 84/312 (26%), Gaps = 65/312 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCA-YA-----WDDEPVKLWD-RTEQSAMPSDL 57 D E + + VG V+T + Y+ + + P D Sbjct: 89 ACDTE-VAQIDVKAVGP---VGNGVVTCLSLYSGPDVDYGNGPYVWVDNLDSAEGTLQLF 144 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL------PSSLKN 111 +L + V HN F+R + GI++ T +AR SL+ Sbjct: 145 KDFLESREYLKVWHNYSFDRHVLYNH-GINVQGLG-GDTMHMARLWNTARFQHGGYSLEA 202 Query: 112 ACLALNFS-EHLTKMEEGKALIARF-CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + K G + + KG P + + + Y D E+ Sbjct: 203 LTADLLLQRKKPMKELFGIPKLRKDGSKGKERIMPTVEELQRFPEFRKRWIRYSVYDAES 262 Query: 170 TRELFKRLIPLSDG-------------------------------ERDLW--------LL 190 T L + L D D + Sbjct: 263 TWFLHRVLQHKLDQTFWFENAPKTNAAVNAAAAAAAVDEEPQTGSMYDFYRQYIILFGEC 322 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYL 245 I +G +DL+ + +++ ++R +L+ + + + + L Sbjct: 323 LTDIERKGMHVDLEYLAGVEKQALEDRARLERLVLKWASRYCDESERINLYSAAQKQQLL 382 Query: 246 FLITGIDLVDMS 257 F + Sbjct: 383 FAPYYDEKKKKQ 394 >gi|32442289|gb|AAP82215.1| DNA polymerase [Podovirus SOG] Length = 400 Score = 95.2 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 60/468 (12%), Positives = 114/468 (24%), Gaps = 131/468 (27%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T VL+R SLK + Sbjct: 1 DTLVLSRLFNPIRENGHSLKAWGWRVG-------------------------CLKQEQPE 35 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSD--------GERDLWLLDQTINDRGYRID 202 N + +YC +DV ++ LI E ++ + + G+ + Sbjct: 36 NFDEFTPAMLDYCVQDVRLNEAVYNFLIKEGKIFSEESVSLEHNVAKIIKQQEKNGFFFN 95 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII------------------------------ 232 ++L + ++ +++++ + Sbjct: 96 TQQAMELLAELKAKQLAVEDEVHSTFKPKLVDDKLVTPYVKKDGELSKRGMTDEEYDRCI 155 Query: 233 ---------------RSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLA 274 + + YL I + L + A Sbjct: 156 KTQSVEPFMRQKLVDFNLGSRKQIGEYLIDFGWIPKKFTPTGQPIVDEGTLKKIEHIREA 215 Query: 275 KDLILNRLASSGSA--ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 K + L A +++ L D R+ G++ G + TGR + +P Sbjct: 216 KLIADFLLYQKRIAQVTSRIDEL-----KDDRVHGSVIPNG-TITGRMTHRNPNMAQVP- 268 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + RSC G+KLV D +G+E R+LA Sbjct: 269 ----------------------NAGSPYGKECRSCWTIPEGRKLVGIDASGLELRMLAHY 306 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 + I T + + R K AL Y G ++A Sbjct: 307 MNDPEYI---------EEVVNGDIHTTNQNLAGLKTRDQAKTFIYALVYGAGDAKIGSVA 357 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + F++ ++ + E L G Sbjct: 358 -----GGGLKKGKELKQTFFKNLPSLKNLKEK-VQKASERGYLKGLDG 399 >gi|322489694|emb|CBZ24954.1| mitochondrial DNA polymerase I protein C,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1538 Score = 94.8 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 58/423 (13%), Positives = 119/423 (28%), Gaps = 106/423 (25%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + + L AV R+ G L + TGR S QN+P++ Sbjct: 1190 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1248 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391 E +R I++ G + ++ AD + +E VLA Sbjct: 1249 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1280 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + + ++ + D + + P + + KV Sbjct: 1281 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVMRKAKV----------------- 1319 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + S + L + + A Sbjct: 1320 ------------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEE 1367 Query: 512 AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 ++ + + + + + G +++ ++ AN+ R+VM +V P+ + Sbjct: 1368 HHYKELSKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRVVMLTEPMYYFVV-PTGSK 1426 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NAT 618 ++ + +L VQ ++ + I+C + Sbjct: 1427 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNY 1469 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYE 669 +V TVHD + + V L +M P +P KAE + Sbjct: 1470 GEKAFLVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHS 1529 Query: 670 AKR 672 Sbjct: 1530 GPS 1532 >gi|167565000|ref|ZP_02357916.1| DNA polymerase [Burkholderia oklahomensis EO147] Length = 619 Score = 94.8 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 90/700 (12%), Positives = 161/700 (23%), Gaps = 197/700 (28%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP------SD 56 L D+ET E I + A V P Sbjct: 8 ILTWDLETDGLL----------RELTRIWVLAIGTVGSDVITTYTDHDPNYPPLMEGVER 57 Query: 57 LLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L+ ++ AHN F+R K G ++P + T V+ R Sbjct: 58 LMAHVARGGKT-AAHNGINFDRKALAKVTGYEMPYTAILDTLVMGRLAEP--------ER 108 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L G L + I+ + + + YC++D+ T L+K Sbjct: 109 LG----------GHKLESY----GIEMGILKGSHNEWDRYSEEMRSYCEQDIAVTNALYK 154 Query: 176 RLI------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +L D E + L G+ +++ + L + + R ++ ++ Sbjct: 155 KLERVQTWGESCDLEHTVAYLIDLQMTNGFPLNMREAMTLAAQLWERRDGYLAEMQRVFP 214 Query: 230 GII--------------------------------RSSRQTYALRMYLFLITGIDLV--- 254 I + Y + L G Sbjct: 215 PIYVSAGAVTPKRTMKREGREYTAGAPYTKIVLQEFNPGSEYHVANRLKRKYGWRAPLTE 274 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNR---LASSGSAILKLNT----LSEAVSSDGRLRG 307 + +++L + ++ L R + ++ K N + R+ G Sbjct: 275 KGNPNITEAVLKKLDFPEVQPLLHFARVDKQWTQLASPPKKNGTGGGWIHHADENHRVHG 334 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + GA TGR + N+ +R Sbjct: 335 YVNSNGA-VTGRMTHSRPNSANI------------------------------DKEMRHI 363 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 I S G K V D G+E RVLA + D A + D Sbjct: 364 WIPSMGMKQVGCDAEGLELRVLAHYLARYDGGRLTRQLLDGDKALGTDAHSVNRDNTDLF 423 Query: 428 QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 R K + Y G + + + + + Sbjct: 424 SRDGAKTLLYGSLYGAGDEKAGNIWIADWRTSGKPVSEWPVWCHVRGKLKTAKAIGRVVK 483 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + G +L KD+ G Sbjct: 484 AKLLDGIV--------------------GFRKLIKDIETAAKSRGWLKGI---------- 513 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 RR+ ++Q Sbjct: 514 ----------------DGRRIRVRHAHA---------------------ALNTLLQGTGA 536 Query: 608 DILCEGMKNATKNGYDI-----------VLTVHDEIVSET 636 I+ + + +I + VHDE+ E Sbjct: 537 IIMKKALAIYHAEITEIHGLVHGVHFGYLANVHDEVQQEC 576 >gi|189427035|ref|YP_001950134.1| DNA polymerase I [Ralstonia phage RSL1] gi|189233347|dbj|BAG41704.1| DNA polymerase I [Ralstonia phage RSL1] Length = 1050 Score = 94.4 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 85/744 (11%), Positives = 186/744 (25%), Gaps = 179/744 (24%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVI-----TLCAYAWDDEPVKLWDRTEQSAMPSDL 57 +D ET + L + Y Q A D P+ W + E+ + +L Sbjct: 243 YCALDTET---KNLSSLHNRIYTMQFTTNHNPNAGYVLAID-HPLTHWSKEERQYIKREL 298 Query: 58 LQYLRDET----VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA- 112 Q +T + H +F+ + ++ L I I + +SL NA Sbjct: 299 RQRFAAKTGPLLITFNGH--MFDLRVIRQILRIPIMWLPVWEIMFAEHSLDENASLLNAA 356 Query: 113 ----------CLALNFSEH--------LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + KA + + D+P + + Sbjct: 357 SNAVNPDGKKATYGGLAPIFTSYGNDHYYTAAFSKAQRSTSGQVKPDNPDFLEYASTDTV 416 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERD-----LWLLDQTINDRGYRIDLDLVLK- 208 + + + + P + + + G + + Sbjct: 417 SIAHIRQMQIKRASYMEIDGQSFAPYFVRHMEQQMSDTAHALSHMRNDGSSLSRPALKHL 476 Query: 209 ------LQELIAQERKK--LDEDIVKLTDG-------------------IIRSSRQTYAL 241 L+E++A+ + L ++ K I + Sbjct: 477 MGPKSPLREMMAKTLDQLRLMNEVRKANKELLSDSGFKAKSLFGGVSDKWIFQPTKPDHK 536 Query: 242 RMYLFLITGIDLVDMSEGT-----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 F + G++ + MS+ T K + H L A + + S Sbjct: 537 AKLFFDVLGLEPLSMSKITGKPQIDKEFIKHYKDKNKVVALYGEYQALTKVISTYVKAWS 596 Query: 297 EAVS------SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ +D LR TGR Q +P Sbjct: 597 RRLNTALDESTDDSLRADYFLVD---TGRLGSKDPNLQQIPS------------------ 635 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G S +++ +A G LV D + E R+ + +G+ AF G ++ Sbjct: 636 ------RGPLSKLLKTLFVARPGYLLVRFDYSAHEVRIWSVASGDKVIAAAFRTGLELRQ 689 Query: 411 TTYAK-------------------AFNTPIDKVSKEQRAIGKVM--ELALGYQGGAKVFK 449 V K+ V + Y GA+ Sbjct: 690 AFIQDPSDANKKALKEKGDFHILNVQRFFKKLVDKDHPLRDAVKKVVFGVIYGKGAETLG 749 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + A ++++ + Sbjct: 750 EDTKEGDISSLRAEVAKLYDESL------------TCKDAKRLARINEMLEELDD----- 792 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 + L+ + +A + + + + + + + ++ + R Sbjct: 793 ------KLTALFNEDRSEYAQGIVDKMFGEFKAGHRWIQRMSKMAEEKFYVYSFNGRVRH 846 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG---------------- 613 + S+ +R T +Q ++ +I + Sbjct: 847 L---YAAMTGDKRIISKQVRRGTNAP------IQGVASEIGNKADRLIITEYYKRLPKLK 897 Query: 614 -MKNATKNGY--DIVLT--VHDEI 632 M ++ + + VHD + Sbjct: 898 KMLGIDRSDWELRVFSQRAVHDAL 921 >gi|322497680|emb|CBZ32756.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1548 Score = 94.4 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 58/423 (13%), Positives = 118/423 (27%), Gaps = 106/423 (25%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + + L AV R+ G L + TGR S QN+P++ Sbjct: 1200 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1258 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391 E +R I++ G + ++ AD + +E VLA Sbjct: 1259 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1290 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + + ++ + D + + P + + KV Sbjct: 1291 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1329 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + S + L + + A Sbjct: 1330 ------------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEE 1377 Query: 512 AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 ++ + + + + + G +++ ++ AN+ R VM +V P+ + Sbjct: 1378 HHYKELCKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRAVMLTEPIYYFVV-PTGSK 1436 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NAT 618 ++ + +L VQ ++ + I+C + Sbjct: 1437 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNY 1479 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYE 669 +V TVHD + + V L +M P +P KAE + Sbjct: 1480 GEKAFLVNTVHDCVWVDAHKCVADEVHADLARIMGHTQEAIAALWPDMKLDVPFKAEIHS 1539 Query: 670 AKR 672 Sbjct: 1540 GPS 1542 >gi|321399199|emb|CBZ08517.1| putative mitochondrial DNA polymerase I protein C [Leishmania infantum JPCM5] Length = 1548 Score = 94.4 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 58/423 (13%), Positives = 118/423 (27%), Gaps = 106/423 (25%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + + L AV R+ G L + TGR S QN+P++ Sbjct: 1200 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1258 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK--LVVADLAGIEARVLAW 391 E +R I++ G + ++ AD + +E VLA Sbjct: 1259 ED----------------------------LRRLIVSRFGAQGMMIEADYSQLEVVVLAA 1290 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + + ++ + D + + P + + KV Sbjct: 1291 LCRDPRMMQELRDNVDFHCLRVSLMTKEPYE----DVVRKAKV----------------- 1329 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + S + L + + A Sbjct: 1330 ------------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEE 1377 Query: 512 AKHQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 ++ + + + + + G +++ ++ AN+ R VM +V P+ + Sbjct: 1378 HHYKELCKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRAVMLTEPIYYFVV-PTGSK 1436 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NAT 618 ++ + +L VQ ++ + I+C + Sbjct: 1437 FDFTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNY 1479 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYE 669 +V TVHD + + V L +M P +P KAE + Sbjct: 1480 GEKAFLVNTVHDCVWVDAHKCVADEVRADLARIMGHTQEAIAALWPDMKLDVPFKAEIHS 1539 Query: 670 AKR 672 Sbjct: 1540 GPS 1542 >gi|169835973|ref|ZP_02869161.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 180 Score = 94.4 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 23/206 (11%), Positives = 51/206 (24%), Gaps = 42/206 (20%) Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + + + + + + + + + + + E Sbjct: 9 RRNAKVINFGVLYGMSPHGLSAATGMSFIEAKKFIDDYFNLRRPIREF---IEETLEKAK 65 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 EG + RR DVK + A + Sbjct: 66 NEGYVTTY-----------------------FGRRRPTPDVKSSNFMVREAAKRA----- 97 Query: 593 YGGKLTENIVQAISRDILCEGMKNATKNGYDI---VLTVHDEIVSETPDTPYFSVGTLCS 649 +Q D++ M + ++ +L +HD I+ E P V + Sbjct: 98 ----AANMPIQGTEADLMKRAMLRTEEKLGNLGEQILQIHDSILVECPKKNADKVVEILR 153 Query: 650 -LMTK-NPSWAKGLPLKAEGYEAKRY 673 M P + LK + + + Sbjct: 154 FEMESVAPE--LDIKLKVDIKTGEHW 177 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 11/135 (8%), Positives = 22/135 (16%), Gaps = 14/135 (10%) Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + +V+ QR KV+ + Y + F Sbjct: 1 MAQVTSNQRRNAKVINFGVLYGMSPHGLSA-----ATGMSFIEAKKFIDDYFNLRRPIRE 55 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 ++ G V + E Sbjct: 56 FIEETLEKAKNEGYVTTYFGRRRPT---------PDVKSSNFMVREAAKRAAANMPIQGT 106 Query: 541 RRVANVPRLVMRRHK 555 ++ K Sbjct: 107 EADLMKRAMLRTEEK 121 >gi|157866599|ref|XP_001687691.1| mitochondrial DNA polymerase I protein C [Leishmania major strain Friedlin] gi|68125305|emb|CAJ03123.1| putative mitochondrial DNA polymerase I protein C [Leishmania major strain Friedlin] Length = 1548 Score = 94.4 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 56/421 (13%), Positives = 115/421 (27%), Gaps = 102/421 (24%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + + L AV R+ G L + TGR S QN+P++ Sbjct: 1200 ALQQLRFTEKKLQLFEEGCLFRAVLPECHDRVHGELCHCV-TATGRLSSQSPNLQNIPKE 1258 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 E ++ A ++ AD + +E VLA + Sbjct: 1259 EDLRRLIVSRFSAQGM--------------------------MIEADYSQLEVVVLAALC 1292 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + ++ + D + + P + + KV Sbjct: 1293 RDPRMMQELRDNIDFHCLRVSLMTKEPYE----DVVRKAKV------------------- 1329 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + S + L + + A Sbjct: 1330 ----------EKDPQYIQLRQQAKVFSFQRQYGAGVSTISTTTGLTEQEVDRLIVAEEHH 1379 Query: 514 HQGVLQLW----KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 ++ + + + + + G +++ ++ AN+ R+VM +V P+ + Sbjct: 1380 YKELSKYYSLVTRCVEAGADRLLRLRTLDTSLWNANIRRVVMLTEPMYYFVV-PTGSKFD 1438 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD---ILCEGMK------NATKN 620 ++ + +L VQ ++ + I+C + Sbjct: 1439 FTRDRKSV-----------------PRLKNYPVQGLAGEIVQIMCGAIVREFYRKRNYGE 1481 Query: 621 GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN--------PSWAKGLPLKAEGYEAK 671 +V TVHD + + V L +M P +P KAE + Sbjct: 1482 KAFLVNTVHDCVWVDAHKCVADEVCADLARIMGHTQEAIAALWPDMKLDVPFKAEIHSGP 1541 Query: 672 R 672 Sbjct: 1542 S 1542 >gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG] Length = 401 Score = 94.0 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 57/466 (12%), Positives = 111/466 (23%), Gaps = 126/466 (27%) Query: 95 CTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +L+R SLK + F++ Sbjct: 1 DTLILSRLFRPIRESGHSLKTWGYRVGFAKQ-------------------------EQPL 35 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPL--------SDGERDLWLLDQTINDRGYRID 202 + + EYC DV ++ L+ E + + + G+ + Sbjct: 36 DFDEYTPQMLEYCCNDVRLNELVYLSLLKEQAGFSPQSIALEHAVAKIISDQENNGFAFN 95 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII------------------------------ 232 L + + ++ +++ + + Sbjct: 96 EKQATMLLAKLKDKMYEVTDEVQRTFKPRMVDVKLVVPKFKKDGELSKSGLTTEEYDTCM 155 Query: 233 ---------------RSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLA 274 + + YL + L A Sbjct: 156 TQKKYQPFMRQELQEFNLGSRKQIGEYLMDFGWEPKRFTPTGQPIVDEGTLKKITHIHEA 215 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 K + L I ++ + +A+ DGR+ G++ G + TGR S +P Sbjct: 216 KPIADFLLYQKR--IAQIQSWLDALEEDGRVHGSVIPNG-TITGRMSHNHPNVAQVP--- 269 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 R+C G LV D +G+E R+LA Sbjct: 270 --------------------AVYSPFGVECRACWTVEEGNVLVGVDASGLELRMLAHYMN 309 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ I T E R K AL Y G + ++ Sbjct: 310 DEEYI---------NEVVNGDIHTTNQKLAGLESRDTAKTFIYALVYGAGDEKIGSV--- 357 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + ++ Q + L G Sbjct: 358 --VGGSRKQGKELKNRSLTNLPALKTLKEK-VQQAAKRGFLKGLDG 400 >gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis] Length = 158 Score = 94.0 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 3/144 (2%) Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R A G ++ AD + IE R++A ++ +KAF +D++ T + Sbjct: 2 KDLRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNY 61 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQNVKSTSTFEDWEQAES 480 ++++KE+R + K + L Y K AS G+++ N + FE ++ + Sbjct: 62 EEITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKK 121 Query: 481 HHLWMQDQYPEFAVK--DKLIGTA 502 H ++ L+G Sbjct: 122 WHEETKNHLNHHGYIIAKTLLGRR 145 >gi|70953922|ref|XP_746033.1| POM1 [Plasmodium chabaudi chabaudi] gi|56526532|emb|CAH77590.1| POM1, putative [Plasmodium chabaudi chabaudi] Length = 1429 Score = 94.0 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 60/197 (30%), Gaps = 15/197 (7%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68 + G+ + E I L A ++ PV ++D + + L + L DE ++ Sbjct: 1244 YCGLDMETTGLEVFGE--KIRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1301 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + N F+ + T + ++ ++ + + K Sbjct: 1302 IIQNGKFDTKFLLYN---NFNITNIFDTYIASKLLDKNKNM----YGFKLNNIVEKYLSV 1354 Query: 129 K-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 + + + + L Y K + + + + ++D E Sbjct: 1355 YLDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLS---EQIVAENMQIVNDIENKC 1411 Query: 188 WLLDQTINDRGYRIDLD 204 L + G +DL+ Sbjct: 1412 ILPICDMELNGITVDLE 1428 >gi|328866460|gb|EGG14844.1| hypothetical protein DFA_10717 [Dictyostelium fasciculatum] Length = 1213 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 53/386 (13%), Positives = 102/386 (26%), Gaps = 36/386 (9%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113 L++ L +E + V+ N +F K +LA S + Sbjct: 664 ELLIRILENEAIKKVSFNCQESFKIFFAYNTY-FSPKNIWDPKILAWMYKPESKRVDMST 722 Query: 114 ---LALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 S +M K L + + P T +N+ + Sbjct: 723 LVVEYQIDSHDKLEMANVIKNLDQHTDNNNNNINPSM-TVSNYTCLANDIRNGSILQLIL 781 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV--KL 227 +L + E + + + G + + Q I + + + + Sbjct: 782 EHKLSDAKLEPLQ-EMQIIPILSKMEYYGVSFCSEALKTCQVHIDSLLENITKQFHLLRD 840 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDL------VDMSEGTLKSILS----------HSNIT 271 GI + L I I D TL+ + Sbjct: 841 GLGIKMDDFGLSQRGVVLSCINQIKPSRIPQIPDAKAQTLRKFAEIDLSLKEEKAKNGDM 900 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + L + + + +S + + G + TGR S Q +P Sbjct: 901 ENLIMACRIYLDHKRFSQFNNIFVKKYISVGQNIYTSWNHTG-TATGRLSSSSPNVQQIP 959 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDC---------VRSCIIASNGKKLVVADLA 382 R + ++ + N + R C G +V D + Sbjct: 960 RNVANIKVSDKEDGDGNDYDDDDVSDDEEEGTTNASTVHINARDCFRTRPGYTMVALDYS 1019 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDI 408 IE RV+A + ++ + F D Sbjct: 1020 QIELRVMAHQSDDEHLLHFFQQDADF 1045 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 38/112 (33%) Query: 598 TENIVQAISRDILCEGMKNATKN--------------------------------GYDIV 625 +I+Q + DI+ M + ++ Sbjct: 1090 VNSIIQGSAADIIKAAMIRINQLLIQESKEVNQILQQQGQQQGQTNQQQNKDDIIEARLL 1149 Query: 626 LTVHDEIVSETP----DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 L +HDE++ E P + + + +M + LK + Sbjct: 1150 LQIHDELIFEIPNVMLEIKPDILEKIKHMMECSTELKVD--LKVAMKIGNSW 1199 >gi|332142368|ref|YP_004428106.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327552390|gb|AEA99108.1| DNA-directed DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 289 Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 20/239 (8%) Query: 1 MSKLFIDIETR--SPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 M + +D ET S + K+G AY I + + E + + E + + Sbjct: 1 MIDVTLDWETYFDSQYNIKKLGTMAYVRDPRFQILGASMKVEHEDTRWYTPNEIDVLVEE 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACL 114 L V + N+ F+ ++ + + T +A+ L + Sbjct: 61 LKSLEASNGVRLIGQNTKFDGLILAEKHNFI--PSYYCDTMAMAKGLWPHHKSDLDSLTK 118 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L F +K +G L + K Q+ +Y +D + T E F Sbjct: 119 RL-FPNDKSK-HKGTELESFKGK--------TYEDIEADGTEQILIQYGVQDSDITYESF 168 Query: 175 KRLIPL-SDGERDLWLLDQTI-NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 K++ E D+ + + D + +D L+ ++ +E++ + + + + Sbjct: 169 KQMEQWYPKPEMDIIDMTVRMFCDPVFVLDTSLMDRVAVEATKEKESVIQTAIDFVNSD 227 >gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 310 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 109/334 (32%), Gaps = 86/334 (25%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++D +L L +YGA QNL R Sbjct: 39 NNDNKLVVPLVYYGAHTGRYGGNEGLNLQNLQR--------------------------- 71 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 R + A G+ + VAD + IEAR++AW A E + F NG D Y T + Sbjct: 72 -GSEHRKALTAPFGQLVYVADSSNIEARIVAWFAQETALLNQFKNGIDTYATLATDIYGF 130 Query: 420 PIDKVSKEQRA-IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P+ K + + +GKV L L Y GA+ F + + Sbjct: 131 PVTKQTHQLERNVGKVARLGLQYGMGARTFHRTMESGPMGIPPMP--------------- 175 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 E + K +R H + + W ++ + ++ Sbjct: 176 -------------------WAFPEIEKIVKTYRRTHPMIKKCW-EIGNQIIQKMIRKDTL 215 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-------------SYLNTATS 585 R V + LP+ L + +++ + + Sbjct: 216 ETWRCLTVRHQCL---------ELPNGMYLQFPNLRNKEIQTAQGPQYEVVYDSYDYKSK 266 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 +L+ +R YGGKL ENI QA++ + E M + + Sbjct: 267 KLVEKRLYGGKLLENIAQALAGLAMKEMMLDIQE 300 >gi|312062862|gb|ADQ12724.1| DNA polymerase A domain-like protein [Acinetobacter phage phiAB1] Length = 494 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 53/423 (12%), Positives = 104/423 (24%), Gaps = 92/423 (21%) Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL---------NTLSEAVSSDGRLRGT 308 T L A + + + + + V +G + Sbjct: 106 YSTGDDALDLVAKFTEAAQPLRDMKKLIKDTTTYYLVEDDKGKQSGMLQYVEPNGIIHHQ 165 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 L A+ TGR SG QN+PR S V+ Sbjct: 166 LNNC-ATVTGRLSGSKPNLQNVPRDGTS--------------------------KVKEMF 198 Query: 369 IASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 ++ G +LV D + +E LA I+G+ ++ +G D++ A A + V + Sbjct: 199 VSRFGSDGRLVECDYSALEVVALASISGDKNLLQQLIDGTDMHCYRLAGALGEDYETVFE 258 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 + + K + + Sbjct: 259 KCH------------------------------DKSHPEHKKYKQLRTDIKPRAFANQYG 288 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + E K+ R + + + + V + Sbjct: 289 ASAMGISFSTGCSLEEAEQFKETERKLFPESSTFSERIVRPQVEQNGLSMPMESELVNGI 348 Query: 547 PRLVMRRHKRDVHIVLPSSRRL-VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + R + + S R+ Y G+ ++ +Q Sbjct: 349 WKHFRRGFFKALSGTCYSFRQFPKYVKGVGEKYDYKDT------------QIANYPIQGE 396 Query: 606 SRDILCEGMKNATK---------NGYDIVLTVHDEIVSETPDTPYFSV--GTLCSLMTKN 654 + I+ + + TVHD I + D + + +M Sbjct: 397 ASFIVQCACGRVIRWLIGNDFFGGKALPINTVHDCIQLDCADRETAIMVGTKVKEIMDST 456 Query: 655 PSW 657 P W Sbjct: 457 PKW 459 >gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173] Length = 169 Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 2/150 (1%) Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 L +R A G V+AD + IE R+ A GE IKAF G D++ T Sbjct: 1 DPNLQNIPKDLRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTA 60 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + + ++KE+R + K + L Y AK A+ G+DL F Sbjct: 61 SILLGKREEDITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFS 120 Query: 474 DWEQAESHHLWMQDQYPEFAVK--DKLIGT 501 +E + H ++++ + L+G Sbjct: 121 YFEGFKDWHNKVKEELKKTGKSSGHTLLGR 150 >gi|58257974|gb|AAW69382.1| DNA polymerase I [Hydrogenothermus marinus] Length = 172 Score = 92.5 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 3/165 (1%) Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 L +R + ++VAD + IE R+ A + I AF G D++ T Sbjct: 1 DPNLQNIPTSLRKLFRPAKNYSMIVADYSQIELRIAAEYTKDQVMINAFKQGLDLHRFTA 60 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTF 472 + + ++KE+R + K + L Y + A S G+++ + F Sbjct: 61 SLITGKDYEDITKEERQMAKAINFGLIYGISPRSLMEYASSSYGVEISLKEAQIFHEKFF 120 Query: 473 EDWEQAESHHLWMQDQYPEF--AVKDKLIGTACELVKKAWRAKHQ 515 E ++ + H +++ L+G +++K + Sbjct: 121 EHYKGFKKWHEETKEKLKNHREIEVVSLLGRRMKVMKFTDAVNYP 165 >gi|297192970|ref|ZP_06910368.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|297151581|gb|EFH31247.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 406 Score = 92.5 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 121/480 (25%), Gaps = 127/480 (26%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233 E L+ +N G D+ + + + +L +++ +R Sbjct: 8 ESAFMLVATEMNRAGLPWRADVHRAVLHELLGERYAGGGEPRRLAELADEVSAAFGRRVR 67 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 +R F GI + L+ I A ++ Sbjct: 68 PDLPADVVRA--FAQAGIKVRSTRRWELEEI------DHPAVKPLIEYKKLYRIWTAHGW 119 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + DGR R G S +GRW+ +P+ Sbjct: 120 SWLQDWVRDGRFRPGY-LPGGSVSGRWTTNGGGALQIPK--------------------- 157 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R ++A +G +LVVAD +E RVLA I+ + ++ + D+Y + Sbjct: 158 ---------VIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHDGDLYTSLS 208 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 +AF+ D K+ L Y G L+ + Sbjct: 209 DRAFSGDRDH--------AKIALLGAIY----------GQTSGDGLKNLAAL-------- 242 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 R + + D A + Sbjct: 243 -------------------------------------RRRFPRAVAYVDD----AAKAGE 261 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 EG + PR + I T R Sbjct: 262 EGRLVRTWLGRTSPRAAGAGDDDEAGIP-------QEPVEAAPADGEFTPGYASTNARAR 314 Query: 594 GGKLTENIVQAISRD--ILCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 G +VQ + D +L G +V HDE++ P V Sbjct: 315 GRFTRNFVVQGSAADWALLMLAALRQATAGMRAELVFFQHDEVIVHCPAEEARDVAEAIR 374 >gi|48697101|ref|YP_024759.1| DNA polymerase I [Pseudomonas phage PaP2] gi|46369536|gb|AAS89617.1| p31 [Pseudomonas phage PaP2] Length = 801 Score = 92.5 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 66/517 (12%), Positives = 138/517 (26%), Gaps = 74/517 (14%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTS--VLARTNGLPSSLKNACLALNFSE 120 + HN L++ + W T + + L + C L + Sbjct: 230 SDIPKCFHNGLYDSFHLMRYHA---APNNWIFDTMGLSHSWYSELSKDVGFLCSWLLYDH 286 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K + A S + + E K +K+ PL Sbjct: 287 KEWKYMADREHKAIGGIESYW----KYAAYDTHMMMRALIELLKNGDTWMLRNYKKQFPL 342 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ G+R++ + LKL E + + +D+ +TD + Sbjct: 343 ------VYPSLYGA-FEGFRVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPGSPDQ 395 Query: 241 LRMYLFLITGIDLVDMSEGTL-------KSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + +L+ + G ++ + S I L D + N + Sbjct: 396 VSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALSTY-- 453 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC------VFQPQNLPRQERSEEILTQTIQAL 347 + RL +L +G + TGR++ Q QN P Sbjct: 454 --FSFRQWNSRLLYSLDPFG-TDTGRFASRASAAWIGTQIQNQPVYA------------- 497 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +G D + EA A+++ IKA Sbjct: 498 -----------------KEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKAL----- 535 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + KV E + + ++ ++ + + F N+ Sbjct: 536 CFPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLD 595 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 T + L + + P+ +K + + A+ V Q W+ + Sbjct: 596 DIQTLFLAAKILGVVLTLNPKAPK----EKTPKDFAKQLLDAYHIPFPEVQQWWESIFME 651 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + I+ + + + S Sbjct: 652 VLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS 688 >gi|225420465|ref|ZP_03762768.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme DSM 15981] gi|225040896|gb|EEG51142.1| hypothetical protein CLOSTASPAR_06810 [Clostridium asparagiforme DSM 15981] Length = 110 Score = 92.1 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 18/116 (15%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RR ++K ++ + +Q + D++ M + Sbjct: 2 GRRRPIPELKSANFMQRQFGERV---------AMNSPIQGTAADVMKIAMIRVDRELKKR 52 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKAEGYEAKRY 673 IVL +HDE++ ET + +V L M + L+ + + Sbjct: 53 NMKSRIVLQIHDELLVETERSEVEAVKALLEEQMKGAAD--LKVALEVDAKVGDSW 106 >gi|194383398|dbj|BAG64670.1| unnamed protein product [Homo sapiens] Length = 611 Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 74/281 (26%), Gaps = 36/281 (12%) Query: 65 TVMCVAHNSL-FERILFKKTLGIDIPSKRWIC-----TSVLARTNGLP---SSLKNACLA 115 + N+ F RI+ + G D K + A S ++ Sbjct: 313 KCPVICFNAKDFVRIVL-QFFGNDGSWKHVADFIGLDPRIAAWLIDPSDATPSFEDLVEK 371 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K+ +R + +Y + T EL Sbjct: 372 YCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLEL-- 429 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L + + +++ + + K L+ K+L+++ G Sbjct: 430 ----------PLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAH-FVAGERFLI 478 Query: 236 RQTYALRMYLFLITG---------IDLVDMSE--GTLKSILSHSNITQLAKDLILNRLAS 284 LR LF + + + T +++L+ +IL Sbjct: 479 TSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQV 538 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 ++ L A G + T G + TGR S Sbjct: 539 HKIKSTFVDGLL-ACMKKGSISSTWNQTG-TVTGRLSAKHP 577 >gi|158345163|ref|YP_001522870.1| putative DNA polymerase [Enterobacteria phage LKA1] gi|114796459|emb|CAK24997.1| putative DNA polymerase [Pseudomonas phage LKA1] Length = 791 Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 54/438 (12%), Positives = 117/438 (26%), Gaps = 99/438 (22%) Query: 252 DLVDMSEGTLKSILSH--------SNITQLAKDLILNRL---ASSGSAILKLNTLSEAVS 300 + S L+ + H S + L KD + K+ + + V Sbjct: 390 PVYSTSSEVLEVLAKHGFEAADKLSRMASLEKDNGTYYRSVEYDKEGNVKKVKGMLQYVQ 449 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DG + +L A+ TGR S QNLPR S Sbjct: 450 PDGIIHHSLNLC-ATATGRLSSSYPNLQNLPRDGTS------------------------ 484 Query: 361 SDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 V+ + G +++ D + +E +LA ++G++ ++ G D++ A Sbjct: 485 --RVKEMFESRFGTAGRIIEVDYSALEVVMLAALSGDENLLEQLVKGTDMHCLRLAAKLG 542 Query: 419 TPID---------------KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 P + K K+ R K A Y A+ + Sbjct: 543 EPYEEVLHKAVENQAHPEHKRYKQMRTDIKPPSFAAQYGASAE-----GIAYATGVSVEY 597 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT---ACELVKKAWRAKHQGVLQL 520 + + Q+ + ++ + + + + +R + Sbjct: 598 AKEFLETEARLFPQSIAFRGVVRAEVERTGELPEGLHREQDEATGAWRIYRRGYWQAPGG 657 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + +E + + + + + R L + + Sbjct: 658 ARYSFRQWPQWNKELRQRVMDYKDTQIANYWCQGEAFYLMAVSAGRVLRWLLSVNFLANE 717 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 ++ N VHD + + ++ Sbjct: 718 EFPQGRVC--------FINN---------------------------VHDALYFDVHESV 742 Query: 641 YFSVG-TLCSLMTKNPSW 657 VG + ++M P + Sbjct: 743 VREVGLQVKAIMEDAPKY 760 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 21/195 (10%) Query: 67 MCVAHNSLFERILFKKTLGIDI-----PSKRWICTSVLARTN----GLPSSLKNACLALN 117 + VAHN+ +E F + R +CT + SL Sbjct: 70 LLVAHNAGYEVSWFLTRYRDEFEKFLKRGGRVLCTQMAEYILSNFTDTYPSLDETAPKYG 129 Query: 118 --FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K + + + + + + F Y + + R + Sbjct: 130 GTHKIDAVKELWKQGHLTSQIDPKLLAEYLAGPEGDVENTRRTF--YGQMALLQERGQWG 187 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLD----LVLKLQELIAQERKKLDEDIVKLTDGI 231 + + G ++ + + K + +A+ R ++ + + +L + Sbjct: 188 LFLERCEALLAF----AYCEFFGLYVNTEVAEANLAKQEAELAELRAEVQKLLPELPEHF 243 Query: 232 IRSSRQTYALRMYLF 246 + Y L LF Sbjct: 244 EFNWGSDYHLSALLF 258 >gi|317124628|ref|YP_004098740.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043] gi|315588716|gb|ADU48013.1| DNA-directed DNA polymerase [Intrasporangium calvum DSM 43043] Length = 557 Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 85/532 (15%), Positives = 132/532 (24%), Gaps = 143/532 (26%) Query: 149 RANHVQAWQLFGEYCKRDVEATRELFK---------------RLIPLSDGERDLWLLDQT 193 RA+ + +W E R E+ + RLI E +L Sbjct: 105 RADALGSWATTTERLARLAHLALEIQRVQEASLRERAGGRAERLIRTVWSESAAAVLCLE 164 Query: 194 INDRGYRIDLDLVLKLQ----------ELIAQERKKLDED--IVKLTDGIIRSSRQTYAL 241 + G +D L + A + L + + G R + Sbjct: 165 LERDGLPVDRLAAEDLISAAAGPRPRDDADAARIRALRDQVVLRHARGGDRTDLRNPAHV 224 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 R L G+D+ + L+ + L L+ R + L E V Sbjct: 225 RAML-QSVGVDVPNTRAWVLEPY---RHTHPLVDALLSWRKDERIATTYGYRWLDEHVGG 280 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D RLRG + GR + NLP Sbjct: 281 DDRLRGAWTACDGAA-GRMTAQN-GLHNLPAP---------------------------- 310 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I A V ADL +E RVLA ++ + +A + + P+ Sbjct: 311 --LRPAIRAEPQHVFVRADLGQVEPRVLAVVSEDRAFAEATRSDDLYA----------PV 358 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 R++ KV LA Y + + + A Sbjct: 359 ADKLGVDRSVAKVAVLAAMYGQRSG----------------AAGEALKDLEAAYPVAMGV 402 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A D + GG + Sbjct: 403 LDR--------AYADGVARRPLRTF----------------------------GGRLIRF 426 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 A R PS RL GD + A + R I Sbjct: 427 GSAGDAADPTRAEGHADQEGEPSGIRL-----DGDRGAADAARGRFAR---------NAI 472 Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + ++ G IVL +HDEI+ P + Sbjct: 473 IQGSAAELFKAWAATVRHAVRPLGGQIVLCLHDEILVHVPRSRAEEARRAVE 524 >gi|325964629|ref|YP_004242535.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Arthrobacter phenanthrenivorans Sphe3] gi|323470716|gb|ADX74401.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Arthrobacter phenanthrenivorans Sphe3] Length = 572 Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 52/405 (12%), Positives = 101/405 (24%), Gaps = 78/405 (19%) Query: 149 RANHVQAWQLFGEYCKRDVEA--TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 R + + RL L E ++ + G DL Sbjct: 142 RYTAEELRAEYAAQQAALATVGQEENQRSRLQLLLAAESAGAMIAAEMQHAGVPWREDLH 201 Query: 207 LKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 ++ + + L++++ +L + + L L GI++ Sbjct: 202 EQILAEHLGPRPPAGHRPAKLEVLNQELRRLLNSPTLNPDSPQDLMRALH-RNGIEVKTT 260 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 + L+ + A +L S + +A + GR R G Sbjct: 261 RKWELRE------SSHPAIAPLLAYKQLSRLHTANGWSWLDAWVAGGRFRPEYV-VGGVV 313 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 +GRW+ +PR +R + A G KL Sbjct: 314 SGRWASRGGGALQIPRN------------------------------IRGAVHADPGHKL 343 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 +VAD + +E RVL +A + +A + + RA KV Sbjct: 344 IVADASQLEPRVLVALAQDSSMAEAARDQDLYAGIAAKGFGG---------DRAKAKVAL 394 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 L Y + + +A + Sbjct: 395 LGAMYGATSG----------------EAGRLMPQLARTYPRAVDYVEQAARAGESGGTVT 438 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +G + + W + + + G + Sbjct: 439 TRLGRSSPPPSERWFQSQ---RSASAEEQRRAESIARSRGRFTRN 480 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 43/197 (21%), Gaps = 35/197 (17%) Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D + + + + + Sbjct: 362 DSSMAEAARDQDLYAGIAAKGFG-GDRAKAKVALLGAMYGATSGEAGRLMPQLARTYPRA 420 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + E A + GG+++ R + P PS R Sbjct: 421 VDY----VEQAARAGESGGTVTTRLGRSSPP--------------PSERWFQSQRSASAE 462 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEG-----------MKNATKNGYDIVL 626 + R G +VQ + D K+ ++VL Sbjct: 463 EQRRAESIARSR----GRFTRNFVVQGSAADWAACWLAELRRRLRALRKDLH-LNAELVL 517 Query: 627 TVHDEIVSETPDTPYFS 643 +HDE++ P + Sbjct: 518 FLHDEVMVHAPVEAVDA 534 >gi|147917349|ref|YP_001218832.1| DNA polymerase [Pseudomonas phage 119X] Length = 801 Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 65/517 (12%), Positives = 138/517 (26%), Gaps = 74/517 (14%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTS--VLARTNGLPSSLKNACLALNFSE 120 + HN L++ + W T + + L + C L + Sbjct: 230 SDIPKCFHNGLYDSFHLMRYHA---APNNWIFDTMGLSHSWYSELSKDVGFLCSWLLYDH 286 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K + A S + + E K +K+ PL Sbjct: 287 KEWKYMADREHKAIGGIESYW----KYAAYDTHMMMRALIELLKNGDIWMLRNYKKQFPL 342 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ G++++ + LKL E + + +D+ +TD + Sbjct: 343 ------VYPSLYGA-FEGFKVNNETRLKLVEKAEERLESALKDLRIMTDDPEFNPGSPDQ 395 Query: 241 LRMYLFLITGIDLVDMSEGTL-------KSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + +L+ + G ++ + S I L D + N + Sbjct: 396 VSEFLYEVLGAKRPPRAKSKSKTDKKSRAFVASQHPIFALFSDRVNNYSLEKKALSTY-- 453 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC------VFQPQNLPRQERSEEILTQTIQAL 347 + RL +L +G + TGR++ Q QN P Sbjct: 454 --FSFRQWNSRLLYSLDPFG-TDTGRFASRASAAWIGTQIQNQPVYA------------- 497 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +G D + EA A+++ IKA Sbjct: 498 -----------------KEMYEPDDGYIAFEMDFSKAEAICTAYLSRCSALIKAL----- 535 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + KV E + + ++ ++ + + F N+ Sbjct: 536 CFPDLDNEGNKKDFYKVLGELFFHMEYETVTKEFRNKVLKKIVHGTNYMMGPETFIDNLD 595 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 T + L + + P+ +K + + A+ V Q W+ + Sbjct: 596 DIQTLFLAAKILGVVLTLNPKAPK----EKTPKDFAKQLLDAYHIPFPEVQQWWESIFME 651 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + I+ + + + S Sbjct: 652 VLTTNKLINPITGHVRYFFGDPRRNKKIQRQAVAHQS 688 >gi|32141203|ref|NP_733604.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|24413788|emb|CAD55317.1| putative DNA polymerase I [Streptomyces coelicolor A3(2)] Length = 563 Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 78/538 (14%), Positives = 140/538 (26%), Gaps = 149/538 (27%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLD 191 R + S ++ +A H+ L Y ++ R L RL L+ E L+ Sbjct: 112 QRSAEPGAQSSLFEP-QAVHLPLSDLLAVYAEQQRRHDRSALPDRLRLLTAAESAGMLVA 170 Query: 192 QTINDRGYR----IDLDLVLKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 +N G + +++ L + +L E++ +R + Sbjct: 171 AEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPADVV 230 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + F G+ + L+S+ A ++ + + + Sbjct: 231 KA--FGQAGVKVGSTRRWELESL------DHPAVKPLIEYKKLYRIWVAHGWSWLQDWVR 282 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR R G + TGRW +P+ Sbjct: 283 DGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK----------------------------- 312 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R ++A G +LVVAD +E RVLA I+ + ++ D+Y + +AF+ Sbjct: 313 -VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRAFSGDR 371 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D K+ L Y G L+ + Sbjct: 372 D--------QAKLAVLGAVY----------GQTSGDGLKNLAAL---------------- 397 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 R + + D A +EG + Sbjct: 398 -----------------------------RRRFPRAVAYVDD----AARAGEEGRLVRTW 424 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 P + GD + R G + Sbjct: 425 LGRTCPPAAGAADGTEEA-----GLPQDEPAGAGDRAQEWVPGYASTNARARGRFARNFV 479 Query: 602 VQA---------------ISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 VQ D+ E +V HDE++ P+ +V Sbjct: 480 VQGSAADWALLLLAALRQTCADMAAE-----------LVFFQHDEVIVHCPEEEAATV 526 >gi|148272793|ref|YP_001222354.1| putative DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830723|emb|CAN01663.1| putative DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 556 Score = 91.3 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 85/589 (14%), Positives = 132/589 (22%), Gaps = 162/589 (27%) Query: 93 WICTSVLARTNGLP-------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 W T+ ART L+ L S L + P Sbjct: 52 WDDTAAWARTLIAAGVRVARCHDLRLCHAILRLSTQT----ADSELARLPAGPWDRAAPS 107 Query: 146 DCTRANHVQAWQLFGEYCKRDVE---ATRELF----------KRLIPLSDGERDLWLLDQ 192 + + + R + A L RL L E L+ Sbjct: 108 EREPSASATLFDDLDTSDGRSPDELVAELRLQLEAVAASAEPGRLRLLLAAESAGALVAA 167 Query: 193 TINDRGYRIDLDLVLKLQELIAQ----------ERKKLDEDIVKLTDGIIRSSRQTYALR 242 ++ G D + L + +L + ++ + + Sbjct: 168 EMSADGLPWDTSVHDALLVDLLGGRPAHGGAPPALLRLAARVREILRAPDLNVDSPPDVL 227 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 L GID + L+ I +L S T E D Sbjct: 228 RALR-RAGIDAASTRQWELQEI------DHPVIASLLEHKRLSRLLTANGWTWMETWIRD 280 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR G TGRW+ LPR Sbjct: 281 GRFHPEYVPGGV-VTGRWAASGGGALQLPR------------------------------ 309 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS + A G +LVVAD A +E RVLA +A + A + A Sbjct: 310 QIRSAVRADRGWRLVVADAAQLEPRVLAALAEDRAMADAGRGTDLYQGLVDAGVV----- 364 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 + RA KV L Y Sbjct: 365 ----DTRAHAKVAMLGAMY----------------------------------------- 379 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 G + + + + G +S R Sbjct: 380 ----------GATSGESGRLMPRLV----RAYPRATGY---VERAA-RAGESGAVVSTRL 421 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIV 602 + P + + A R G +V Sbjct: 422 GRSSPPPGDAWVDVQQI-------------GRAGEASSADAARARTSARDQGRFTRNFVV 468 Query: 603 QAISRDI-------LCEGMKNATKNGYD--IVLTVHDEIVSETPDTPYF 642 Q + + L + + G +V +HDE++ PD Sbjct: 469 QGSAAEWALCWLAGLRRRLAAMERPGSRPHLVFFLHDEVMVHAPDDRVD 517 >gi|83286526|ref|XP_730200.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium yoelii yoelii] Length = 1103 Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 45/376 (11%), Positives = 100/376 (26%), Gaps = 70/376 (18%) Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR-LRGTLQFYGASRTGRWSGC 323 + + + I S + L + + + + + L GAS TGR S Sbjct: 756 EKEKDKIKQIINNIKLYRESKKLFQNYIENLPKYIQKNTKKIHCNLNQLGAS-TGRLSCD 814 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+ + R L + K L+ D Sbjct: 815 QPNLQNIHSKFRCTISLKLNQLNSISIKKENIKNTSI------------NKNLLTFDYKQ 862 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E V+A+++ ++ +K N + T ++++KE R + K + + Y Sbjct: 863 MELFVMAYLSFDNQLLKMLNNSDVFVETAKILF---NTNEITKELRRMTKTVIYGILYGQ 919 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 L + + + F + + LIG Sbjct: 920 SEN-----GLAKNLLISENFAKSLIDNFFNFYPNVYKFMQKQKILVKNMNSVYTLIGR-- 972 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + G+ ++ I + ++ +K Sbjct: 973 KRIVDL------GIKNKYRISMN---------TPIQGCSADIMKFALLSCNKIISFDNNI 1017 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 + ++ + +N + + + KL Sbjct: 1018 N----KDINIFLKMNNINVSLLKKYQNYIKSTKLI------------------------- 1048 Query: 624 IVLTVHDEIVSETPDT 639 L +HDE++ E + Sbjct: 1049 --LQIHDELLFECDEN 1062 >gi|307106799|gb|EFN55044.1| hypothetical protein CHLNCDRAFT_134899 [Chlorella variabilis] Length = 1781 Score = 90.9 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 106/332 (31%), Gaps = 46/332 (13%) Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 CT A AW+ + +T + L + E L ++ + G ID + Sbjct: 1458 CTAAASRAAWEEVQPQLQAINGSTMAV------LLEQEMPLAVVLAGMEAVGVGIDTQHL 1511 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT----GIDLV-------- 254 L+ + Q RK ++ +I + + S+ LF G+ Sbjct: 1512 QSLRSQLEQRRKDIELEIARALGRRLDLSKFKEVS-DVLFGKLEGQLGLQPPPCAKKLKR 1570 Query: 255 ---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV------------ 299 ++ +++++ + LI + ++ + L + Sbjct: 1571 GGYSANKEVMQALVRLNPDCPPVVKLIAEHRRLAY-SVWFIRQLLQCARAGAALAQQLEP 1629 Query: 300 ----SSDGRLRG-TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + GR G + +T +G L R+ + Sbjct: 1630 AAGAAPLGRAGGGPRIWTVLHQTNSDTGAGAVLLGLLRRCCVPRTHELRMLLKGTAREGD 1689 Query: 355 DPLGLASDC-----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDI 408 D VR +A+ G L+ AD IE R++A + ++ + F + D Sbjct: 1690 DVSASGQHRLLEANVRKAFVAAPGCVLLGADYRAIELRMMAHFSQDEKLLATFQDGQHDP 1749 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + AK + +VS+ R + K ++ + Sbjct: 1750 FRLLAAKWLGKELGQVSQTDRQLIKHLQYGIM 1781 >gi|220913904|ref|YP_002489213.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6] gi|219860782|gb|ACL41124.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6] Length = 590 Score = 90.9 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 47/327 (14%), Positives = 83/327 (25%), Gaps = 66/327 (20%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L ++ +L + L L GI++ S+ LK + Sbjct: 232 ARLEALAAELRRLLGSPALNPDSPQELIRALH-RNGIEVKSTSKWELKDL------PHPV 284 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L S + +A + GR R G +GRW+ +PR Sbjct: 285 IGPLLEYKKLSRLHTANGWSWLDAWVAGGRFRPEYV-VGGVVSGRWASRGGGALQIPR-- 341 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR + A G KL+VAD + +E RVL +A Sbjct: 342 ----------------------------QVRGAVHADPGYKLIVADASQLEPRVLVALAR 373 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +A + + RA KV L Y + Sbjct: 374 DSVMAEAARDQDLYAGIAAKGFGG---------DRAKAKVALLGAMYGATSG-------- 416 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +A +G + + W + Sbjct: 417 --------ESGRLMPQLARTYPRAVDFVEQAARAGEAGGTVTTRLGRSSPPPSERW---Y 465 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISAR 541 Q + + + G + Sbjct: 466 QSQRSATAEEQRRAESIARSRGRFTRN 492 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/199 (10%), Positives = 43/199 (21%), Gaps = 41/199 (20%) Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + + + + + Sbjct: 378 AEAARDQDLYAGIAAKGFG-GDRAKAKVALLGAMYGATSGESGRLMPQLARTYPRAVDF- 435 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 E A + GG+++ R + P PS R + S Sbjct: 436 ---VEQAARAGEAGGTVTTRLGRSSPP--------------PSERWY-----QSQRSATA 473 Query: 582 TATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKN----------------ATKNGYDI 624 + G+ T +VQ + D + G ++ Sbjct: 474 EEQRRAESIARSRGRFTRNFVVQGSAADWAACWLAELRRRLRSLRAHGTGAGPGGAGPEL 533 Query: 625 VLTVHDEIVSETPDTPYFS 643 V +HDE++ P Sbjct: 534 VFFLHDEVMVHAPAGAVDE 552 >gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4] gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4] Length = 516 Score = 90.5 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 58/376 (15%), Positives = 96/376 (25%), Gaps = 75/376 (19%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL----------IAQ 215 D AT RL L E L + G +L E + Sbjct: 125 DQRATIGTDARLDLLIAAESAGALSAAEMTHTGLPFSTQKHRELLEERLGPRPTGYDLPA 184 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 ++L I ++ + S F GI+L + L+ I A Sbjct: 185 RMQELAAQISEVFGRTVNPSSSVEITEA--FGRQGIELPSTRKWFLQEI------DHPAV 236 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L+L + ++ R R G +GRW+ +P+ Sbjct: 237 PLLLRHRELAKLYSTNGWQWMDSWVRGDRFRPIYVPGGV-VSGRWASRGGGALQIPKT-- 293 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +RS ++A G VVAD +E R+LA ++G+ Sbjct: 294 ----------------------------MRSSVVADPGHVFVVADAGQLEPRILAAMSGD 325 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + A + + + RA KV L + Y A Sbjct: 326 RRMMAAAGDDDLYALVGAEAFGG---------DRAKAKVAILGVLYGATAG--------- 367 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + A + V L+G AC + H Sbjct: 368 -------EAKALLILLRKRFPVAVEYVEQAAKAGERGEVVKSLLGRACPPPSPDFY-SHG 419 Query: 516 GVLQLWKDLTEGFACV 531 + Sbjct: 420 DAHARGRFTRNFVVQA 435 >gi|328883338|emb|CCA56577.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 571 Score = 89.8 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 72/520 (13%), Positives = 138/520 (26%), Gaps = 128/520 (24%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLD 191 R + ++ V L Y ++ R R+ L+ E L+ Sbjct: 121 QRTAEPGSQDSLFEPRPVVSVPFDGLLTVYAEQLRRHDRAEHPGRMRLLTAAESAGMLVA 180 Query: 192 QTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYAL 241 ++ G D+ L + + +L + + +R + Sbjct: 181 AEMHRAGLPWRADVHRDLLNELLGERYAGGGEPRRLAELADQVSAAFGRRVRPDLPADVV 240 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + F G+ L L + A + ++ + + Sbjct: 241 KA--FAQAGVRLKSTRRWELAEL------DHPAVEPLIAYKKLYRIWTAHGWSWLQDWVR 292 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR R G + +GRW+ +P+ Sbjct: 293 DGRFRPEY-LPGGTVSGRWTTNGGGALQIPK----------------------------- 322 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R ++A +G +LVVAD +E RVLA I+ + ++ + +D+Y +AF+ Sbjct: 323 -VIRRAVVADDGWRLVVADADQMEPRVLAAISRDPGLMEVAGHPDDLYTRLSDRAFSGDR 381 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 D K+ L Y G L+ + Sbjct: 382 DH--------AKIALLGAIY----------GQTSGDGLKNLAAL---------------- 407 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 R + + + E +EG + Sbjct: 408 -----------------------------RRRFPRAVAY---VDEAAK-AGEEGRLVRTW 434 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 PR V + + + ++ S R R G + Sbjct: 435 LGRTSPRAVGAGEAEEAGLPQEGGE-----QPAEEGEFVPGYASGNARAR--GRFTRNFV 487 Query: 602 VQAISRD--ILCEGMKN--ATKNGYDIVLTVHDEIVSETP 637 VQ + D +L ++V HDE++ P Sbjct: 488 VQGSAADWALLMLAALRRSLAGMRAELVFFQHDEVIVHCP 527 >gi|255326718|ref|ZP_05367794.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296] gi|255295935|gb|EET75276.1| DNA-directed DNA polymerase [Rothia mucilaginosa ATCC 25296] Length = 668 Score = 89.8 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 64/440 (14%), Positives = 104/440 (23%), Gaps = 107/440 (24%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNI 270 Q+ ++L E I ++ + L L G+ + LKS Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRQK 357 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 D IL T ++ S+G R L+ GA TGRW L Sbjct: 358 RWAMIDPILRYKKLYRIWTANGWTWADTWVSEGAFRPHLEVGGA-ATGRWGASGGGALQL 416 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R + A G+ L V D + IE R+LA Sbjct: 417 P------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRILA 446 Query: 391 WIAGEDWKIKAFANGEDIY-VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 ++ ++ A + + A+ +R+ KV LA+ Y G + Sbjct: 447 ALSRDEALASAGRGADLYAGIAELARMKGV-----GLTERSHAKVGMLAIMYGGRSGEIG 501 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + QA +G V + Sbjct: 502 ALLP----------------HVAALFPQAMDFTERAARIGEAGGQVTTFLGRTSPPVDER 545 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 +R + + G V V L S R Sbjct: 546 FREIVADRSSPAAESR-AVSSARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERIFG 604 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 IV +H Sbjct: 605 MP------------------------------------------------MRTRIVYFLH 616 Query: 630 DEIVSETPDTPYFSVGTLCS 649 DE++ P+ V + Sbjct: 617 DELLLCGPELEADRVERIVR 636 >gi|32442279|gb|AAP82210.1| DNA polymerase [Podovirus SOG] Length = 406 Score = 89.8 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 55/463 (11%), Positives = 109/463 (23%), Gaps = 113/463 (24%) Query: 95 CTSVLARTNGL----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T +L+R SL G I + Sbjct: 1 DTLILSRLADPTRKGGHSLNALS--------------GNEKIDFHDFSTYT--------- 37 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS--------DGERDLWLLDQTINDRGYRID 202 YCK+DV +++ +L E + + G+ +D Sbjct: 38 ------PEMLTYCKQDVAINEKVYLQLKDELSNFGKASIQLEHQMQAIVCEQEKNGFMLD 91 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTD--------------------------------- 229 D+ ++ +E +++ +I + Sbjct: 92 TDIAEEIYTTCLRETNRIEAEIKEFMVPIAVPVKEVIIKRKKDGSIYSNQLLEGCNVQGD 151 Query: 230 -----GIIRSSRQTYALRMYLFLITGIDLVDMSEGTL------KSILSHSNITQLAKDLI 278 + + L ++ +++ + + A + Sbjct: 152 YTKIAWEEFNLGSPVQVNKRL-DRLDWKPTVKTKSGNSYKICPENLATIPDTAPEAVKGL 210 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + GR+ G + GA T R + N+P ++ Sbjct: 211 KAWKVLETRW-KLAQEWLQKSQETGRVHGRVILTGA-VTHRAAHQGPNMANIPSVPHGKD 268 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + ++ + R GK LV D AGI+ RVLA + Sbjct: 269 GILWKMEGM------------YGAECRQAFKVPEGKLLVGTDAAGIQLRVLAHYMNDP-- 314 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + + FN + R K A G + ++ L Sbjct: 315 -----IYTEQVIDGDIHTFNKEALGRFCKDRPTAKTFIYAFLLGAGTGMIASI-----LG 364 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 N ++ +E + Q L G Sbjct: 365 CNNRQANEAMSNFYEAIPALKK-LKSQASQAASMGWIKGLDGR 406 >gi|32442295|gb|AAP82218.1| DNA polymerase [Podovirus SOG] Length = 410 Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 67/471 (14%), Positives = 116/471 (24%), Gaps = 125/471 (26%) Query: 95 CTSVLARTNGLP----SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 T VL+ SL N L F Sbjct: 1 DTLVLSSLACPSRAGGHSLDNWGSILGFP--------------------------KGDHT 34 Query: 151 NHVQAWQLFGEYCKRDV----EATRELFKRLI----PLSDGERDLWLLDQTINDRGYRID 202 + EYCKRDV + L + L E + + Q D G+ +D Sbjct: 35 DWSTYSPEMREYCKRDVGLLEKVVLALDEELKGFSEKSIQLEHQVAWIIQEQMDNGWLLD 94 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT---------------------------------- 228 + V L + +++ +L++++ K+ Sbjct: 95 QEAVFMLLAELKEKKMELEDEVHKVFGPIAKPVRRIVPKIKKDGCMSSVGLKYYGERWSD 154 Query: 229 ---------DGIIRSSRQTYALRMYLFLITGIDLVDMSEG---------TLKSILSHSNI 270 + + + L + +L+ Sbjct: 155 EICGEHTRLEWQEFNIGSRQQIAERLMSAGWKPTKFTPKTPKGGGGNPIVDDVVLADVKG 214 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 A + I + +AV DGR+ G + GA TGR + + Sbjct: 215 IPEATLMADYLTVVRR--IAMAQSWLDAVEDDGRVHGEVNSNGA-VTGRMTHYSPNLGQV 271 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + + +RSC G KLV D G+E R+LA Sbjct: 272 TSGSK-----------------------IYGPEMRSCWTVPQGHKLVGMDADGLELRMLA 308 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 + + A G+ T A S++ K A Y G T Sbjct: 309 HYMNDPEYTRMVAEGDKDAGTDAHTANQRAAGLNSRDD---AKTFIYAFLYGAGDAKIGT 365 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + ++ S + + L G Sbjct: 366 I-----VGKGAKAGRELKARFLDNTPALASLRERVSNSARR-GWLKGLDGR 410 >gi|283457405|ref|YP_003361981.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283133396|dbj|BAI64161.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 668 Score = 89.0 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 64/440 (14%), Positives = 105/440 (23%), Gaps = 107/440 (24%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNI 270 Q+ ++L E I ++ + L L G+ + LKS + Sbjct: 299 QKMQELAEQIQRMLFMPSLNPDSPQDLLRALQSA-GVSVKSTRSWELKSWADAIPAQRDK 357 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 D IL T ++ S+G R L+ GA TGRW L Sbjct: 358 RWALIDPILRYKKLYRIWTANGWTWADTWVSEGAFRPHLEVGGA-ATGRWGASGGGALQL 416 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P +R + A G+ L V D + IE R+LA Sbjct: 417 P------------------------------AEIRQAVQAPEGQVLTVTDGSQIEPRILA 446 Query: 391 WIAGEDWKIKAFANGEDIY-VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 ++ ++ A + + A+ +R+ KV LA+ Y G + Sbjct: 447 ALSRDEALASAGRGADLYAGIAELARLKGV-----GLTERSHAKVGMLAIMYGGRSGEIG 501 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + QA +G V + Sbjct: 502 ALLP----------------HVAALFPQAMEFTERAARIGEAGGQVTTFLGRTSPPVDER 545 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 +R + + G V V L S R Sbjct: 546 FREIVADRSSPAAESR-AVSTARAHGRMTRNFIVQGTAAEWALCWMGAVRSRLLSERIFG 604 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 IV +H Sbjct: 605 MP------------------------------------------------MRTRIVYFLH 616 Query: 630 DEIVSETPDTPYFSVGTLCS 649 DE++ P+ V + Sbjct: 617 DELLLCGPELEADRVERIVR 636 >gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] Length = 520 Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 87/350 (24%), Gaps = 75/350 (21%) Query: 192 QTINDRGYRIDLDLVLKLQEL----------IAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + G L E + ++L I ++ + S Sbjct: 151 AEMTHTGLPFSTRKHRALLEERLGPRPTGYDLPARMQELAAQISEVFGRTVNPSSSVEIT 210 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 F GI+L + L+ I A L+L + ++ Sbjct: 211 EA--FGRQGIELPSTRKWFLQEI------DHPAVPLLLRHRELAKLYSTNGWQWMDSWVR 262 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R R G +GRW+ +P+ Sbjct: 263 GDRFRPIYVPGGV-VSGRWASRGGGALQIPKT---------------------------- 293 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +RS ++A G VVAD +E R+LA ++G+ + A + + + Sbjct: 294 --MRSSVVADPGHVFVVADAGQLEPRILAAMSGDRRMMAAAGDDDLYALVGAEAFGG--- 348 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 RA KV L + Y A + + A + Sbjct: 349 ------DRAKAKVAILGVLYGATAG----------------EAKALLVLLRKRFPVAVEY 386 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 V L+G AC + H + Sbjct: 387 VEQAAKAGERGEVVKSLLGRACPPPSPDFY-SHGDAHARGRFTRNFVVQA 435 >gi|256786957|ref|ZP_05525388.1| DNA polymerase I [Streptomyces lividans TK24] gi|289770851|ref|ZP_06530229.1| DNA polymerase I [Streptomyces lividans TK24] gi|289701050|gb|EFD68479.1| DNA polymerase I [Streptomyces lividans TK24] Length = 493 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 79/524 (15%), Positives = 146/524 (27%), Gaps = 121/524 (23%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLD 191 R + S ++ +A H+ L Y ++ R L RL L+ E L+ Sbjct: 42 QRSAEPGAQSSLFEP-QAVHLPLSDLLAVYAEQQRRHDRSALPDRLRLLTAAESAGMLVA 100 Query: 192 QTINDRGYR----IDLDLVLKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 +N G + +++ L + +L E++ +R + Sbjct: 101 AEMNRAGLPWRADVHREVLHDLLGERYAGGGEPRRLAELAEEVSAAFGRRVRPDLPADVV 160 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + F G+ + L+S+ A ++ + + + Sbjct: 161 KA--FGQAGVKVGSTRRWELESL------DHPAVKPLIEYKKLYRIWVAHGWSWLQDWVR 212 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR R G + TGRW +P+ Sbjct: 213 DGRFRPEF-LAGGTVTGRWVTNGGGGLQIPK----------------------------- 242 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R ++A G +LVVAD +E RVLA I+ + ++ D+Y + +AF+ Sbjct: 243 -VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRETDLYQSVSDRAFSGDR 301 Query: 422 DKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 D K+ L Y + K +A+ + +A + Sbjct: 302 D--------QAKLAVLGAVYGQTSGDGLKNLAAL-----------------RRRFPRAVA 336 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + E + +G C G A +E G Sbjct: 337 YVDDAARAGEEGRLVRTWLGRTCPPA-------------------AGAADGTEEAGLPQD 377 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 R R V+G + +R+ Sbjct: 378 EAADAGDRAQEWVPGYASTNARARGRFARNFVVQGSAADWALLLLAALRQ---------- 427 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 D+ E +V HDE++ P+ +V Sbjct: 428 ----TCADMAAE-----------LVFFQHDEVIVHCPEEEAATV 456 >gi|184200105|ref|YP_001854312.1| putative DNA polymerase [Kocuria rhizophila DC2201] gi|183580335|dbj|BAG28806.1| putative DNA polymerase [Kocuria rhizophila DC2201] Length = 588 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 62/502 (12%), Positives = 120/502 (23%), Gaps = 134/502 (26%) Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERK 218 AT +RL L E L+ + RG + + ++ E + + Sbjct: 168 ATARNPQRLERLLSLESQGALVAADMRHRGIPWNPAVHQQILEDMLGTRPAGEERPARMQ 227 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-- 276 +L +++ + L L G+D+ L+ + Q + Sbjct: 228 ELAQEVRTALAAPALNPDSPVELLKALRNA-GVDVDTTRAFKLQEWTLVNGQPQEQRVAT 286 Query: 277 --LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L S + +GR G TGRW+ +P+ Sbjct: 287 VTPVLEYKKLSRVFSATGWHWLDTWVHEGRFHPEYV-VGGVVTGRWAARGGGALQIPK-- 343 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + A G LVVAD A +E RVLA +A Sbjct: 344 ----------------------------YIRDAVRADPGHALVVADAAQLEPRVLAILAR 375 Query: 395 EDWKIKAFANGE-DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 +D +A + + +A + + +R+ K+ L Y + Sbjct: 376 DDALAEASRGRDLYTAIAEQGQARGSEL-----TERSHAKLALLGAMYGATSGA------ 424 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + +A + +G W Sbjct: 425 ----------GGRFMPQLTRMFPRAVGYVEHAARVGELGHQVCTYLGRWSPAPGPEWFE- 473 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + E + A R Sbjct: 474 ----------VQRATDTQAGERRAAQASRSHGRFSRNF---------------------- 501 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLT 627 +VQ + + + + ++V Sbjct: 502 ---------------------------VVQGSAAEWALAWLGHIRQGLHGADVDAELVFF 534 Query: 628 VHDEIVSETPDTPYFSVGTLCS 649 +HDE++ + V + Sbjct: 535 LHDEVMVHCAEQHADRVQQIVE 556 >gi|148724470|ref|YP_001285436.1| DNA polymerase [Cyanophage Syn5] gi|145588115|gb|ABP87934.1| DNA polymerase [Synechococcus phage Syn5] Length = 583 Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 74/560 (13%), Positives = 132/560 (23%), Gaps = 135/560 (24%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M L DIET V A D ++ + A L + Sbjct: 1 MR-LVFDIETDGLLRGLSVIHCIVARD---------LDTNEEHRFEPHQTKAGLQLLKEA 50 Query: 61 LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLART-----NGL--------- 105 HN ++ K+ + T +L+R Sbjct: 51 -----DELWGHNIVGYDIEAIKELYPKWTTKAKLYDTLILSRLFFTDLLDRDFRSKPANM 105 Query: 106 ------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 SL+ L K E GK L + Sbjct: 106 PGNLYGRHSLEAWGHRLGV----HKSEFGKQL-----------------DGDWSTYSPEM 144 Query: 160 GEYCKRDVEATRELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 EYC +DV + ++ + P + E L + G+ D+ +L+ Sbjct: 145 LEYCAQDVTVSVQVAQMFEPKLEQYADCIDTEHRLATIMAWQEREGFPFDVTAAQQLESR 204 Query: 213 IAQERKKLDEDI--------------------------VKLTDGIIRSSRQTYALRMYLF 246 + E L + + + + + + Sbjct: 205 LRTELDALSDQMRSTFLFVDGGTFTPRRNNKPQGYIADAPMCKLKEFNPTSRHHIAWAFQ 264 Query: 247 LITGIDLVDMS-----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + + + + ++ + A IL G N + S Sbjct: 265 QFRNWEPKEFTDSGKPKIDEPTLTAIGTDEAKAFARILELQKHLGQLAEGKNAWLKLESK 324 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR + +P Sbjct: 325 -GRVHHSCVLN--TNTGRQAHMRPNLAQVPSASEY------------------------- 356 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R+ + + V AD +G+E R LA A + T +T + Sbjct: 357 ---RALFGPGDSRVQVGADASGLELRCLAHY-------LAPFDNGSFAETVVNGDIHTEL 406 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + R GK + L Y GG + A Q + + + Sbjct: 407 ASIYGTDRKSGKGVTYCLIYGGGDHKLGSTAGAS--KAQASKKGKEIRGRIMRDLDGFAA 464 Query: 482 HLWMQDQYPEFAVKDKLIGT 501 + V L G Sbjct: 465 LSDAVSRRARTGVLRGLDGR 484 Score = 37.8 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 6/58 (10%) Query: 597 LTENIVQAISRDILCEGMKN----ATKN--GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 ++Q+ I + + + Y + VHDE+ + L Sbjct: 495 ALNYLLQSAGAVICKQWLLRSYELLDEANIDYWPLAFVHDELQISVAPSQAEMATLLI 552 >gi|281306676|ref|YP_003345482.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2] gi|271277981|emb|CBH51587.1| predicted phage DNA Polymerase [Pseudomonas phage phi-2] Length = 789 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 43/386 (11%), Positives = 97/386 (25%), Gaps = 69/386 (17%) Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + +I K + + + D + +L A+ T R S QNLPR + ++ + Sbjct: 428 HEYNKDGSIKKTKGMLQYIGPDSIIHHSLN-VAATITARLSSSDPNLQNLPRSDEDDDGV 486 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 ++ + ++ D +E +LA ++G+ +K Sbjct: 487 AKSRVKEMFTSRFG-----------------DDGVIIEVDYTALEVVMLAALSGDQALLK 529 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 NG D++ A P +++ + Sbjct: 530 HLQNGTDMHCLRLAAKLKRPYEEI------------------------------LAIAKD 559 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + S + S A + + Sbjct: 560 KHHPEHNSIKQQRTDIKPPSFAAQYGASASGIAFATGVSLEYATEFLATEARLFPRAIAF 619 Query: 521 WKDLTEGFACVVQEG-GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + G + + A R+ R + + S R+ D + Sbjct: 620 RDVVRAEVERTGALPTGLMREQDDAGNFRVYRRGYYQADGGTCYSFRQFDVWDAEARKRV 679 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---------NGYDIVLTVHD 630 + +Q + Q S ++ + + ++ VHD Sbjct: 680 MGFKPTQ----------IANYWCQGESGYLMTLSAGRVMRWLIQHPMFMSKIFMINNVHD 729 Query: 631 EIVSETPDTPYFSV-GTLCSLMTKNP 655 + + V ++M P Sbjct: 730 ALYFDVHKDYLKEVAAAAKAIMEDAP 755 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 80/287 (27%), Gaps = 42/287 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--L 58 M +D+ET++ L V A+ I L + D D + + Sbjct: 1 MRTRILDLETQNHPYLGAV-ASAHCPDNYIVLAGWRDD------VDGVAGTPVERRFNNR 53 Query: 59 QYLRDET-------VMCVAHNSLFERILFK-KTLGIDIP----SKRWICTSVLARTNG-- 104 + D + V HN+++E F + + R +CT + Sbjct: 54 EEADDPAWFNLDGVDLLVCHNAMYEMSWFITRYQPEFLKYLKRGGRVLCTQLGEYLCSHQ 113 Query: 105 ---LPSSLKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 P+ L + K+ + ++ ++ S + + F Sbjct: 114 TWTYPA-LNEVAQKHGGTPKVDGVKLLWEQGVLTADIDPALLSEYLIGPSGDIENTARSF 172 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK----LQELIAQ 215 Y + +++ + +G G +D + + + Sbjct: 173 --YGQMQYLTKMGMWRMFLERCEGMVAF----SFCEAAGLYVDQQVAQRNHAAQLLELEG 226 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLF---LITGIDLVDMSEG 259 K++ + +L + + Y L LF + + Sbjct: 227 INKQIFALLPELPETFEFNWGSDYHLSALLFGGEVKYDERVPRTDAD 273 >gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1] Length = 563 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 57/467 (12%), Positives = 104/467 (22%), Gaps = 126/467 (26%) Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L ++ + + + L L GI++ + L+ A Sbjct: 213 LEALCAELRNILNSPSLNPDSPQDLMRALH-RNGIEVKSTRQWELQE------SKHPAIQ 265 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L S + +A DGR G +GRW+ +PR Sbjct: 266 PLLAYKKLSRLHTANGWSWLDAWVRDGRFHPEYV-VGGVVSGRWASRGGGALQIPRN--- 321 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ + A G KL+VAD + +E RVL +A + Sbjct: 322 ---------------------------IRAAVHADPGHKLIVADASQLEPRVLVALAQDT 354 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +A + + RA K+ L Y Sbjct: 355 KMAEAARDKDLYAGIAAQGFGG---------DRAKAKIALLGAVYGATTG---------- 395 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + +A + +G + W Sbjct: 396 ------ESGRLMPQLTRTYPRAVGFVEQAAREGEAGRTVTTRLGRSSPPPSAGWLRS--- 446 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + + +R +V L RR + + Sbjct: 447 ------QQSTTAEEQRRADNLARSRGRFTRNFVVQGSAAEWAACWLAELRRRLRALRAE- 499 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 + ++V +HDE++ Sbjct: 500 ---------------------------GSAA--------------GELVFFLHDEVMVHA 518 Query: 637 PDTPY--------FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 PD + LM P+ Y K Sbjct: 519 PDDAVDACISAIEEAATAAKELMFGRIP--VEFPVSVA--VVDSYDK 561 >gi|300742225|ref|ZP_07072246.1| putative DNA polymerase I [Rothia dentocariosa M567] gi|300381410|gb|EFJ77972.1| putative DNA polymerase I [Rothia dentocariosa M567] Length = 579 Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 60/451 (13%), Positives = 113/451 (25%), Gaps = 84/451 (18%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233 E L+ I G D + I + +L E I Sbjct: 169 ESAGSLVAAEIEYYGIPFDTAVHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHL 228 Query: 234 SSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L L G+++ +G + + + + IL Sbjct: 229 NPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWVLIEPILRYKKLYRIFT 287 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + +++ +GR R L+ GA TGRW LP Sbjct: 288 ANGWSWADSWVRNGRFRPHLEVGGA-ATGRWGASGGGALQLP------------------ 328 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +RS I+A G+ +V+D + IE R+LA ++ ++ A + Sbjct: 329 ------------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTD--- 373 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 A ++ V+ +RA KV LA+ Y G + + Sbjct: 374 -MYTGIAELARLEGVALTERAQAKVGLLAIMYGGRSGEIGALLP---------------- 416 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------------ 517 + + +A +G + ++ Sbjct: 417 HVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPTPDERFKRTVADRSTPAAESRAVSL 476 Query: 518 -LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV----LPSSRRLVYSD 572 + ++ L + L L Sbjct: 477 SRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFLHDELLLCGPK 536 Query: 573 VKGDCSYLNTATSQLMRER-TYGGKLTENIV 602 ++ + S R +G E V Sbjct: 537 LEAERVERILRESAAEAARLLFGTVPVEFPV 567 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 34/146 (23%), Gaps = 25/146 (17%) Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 V +L+ E + G P R + Sbjct: 416 PHVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSP-----------TPDERFKRTVADR 464 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----------GYD 623 + + + R+YG +VQ + + M Sbjct: 465 STPAAE---SRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTK 521 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCS 649 IV +HDE++ P V + Sbjct: 522 IVYFLHDELLLCGPKLEAERVERILR 547 >gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980] gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980] Length = 562 Score = 87.8 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 21/235 (8%), Positives = 72/235 (30%), Gaps = 18/235 (7%) Query: 29 VITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 I A+ + + + D + ++ D + +++ + + G Sbjct: 335 EIVGVAWGTEK-KIYVTNDLSVFEN--QAFHSWITDPNRLKKVYDAKRTYVALNRYTG-K 390 Query: 88 IPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH-LTKMEEGKALIARFCKGSIDSP 143 + + A + ++ +++ + GK + Sbjct: 391 TKGIDF-DVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFF 449 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 + + + A D LF+++ E L ++ + G ++D Sbjct: 450 AHLARKVAAINALTPKLSQELADKNQED-LFRKM------ELPLSIILAEMEISGIKVDA 502 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 + +++ + +++++ I + + L + LF G+ ++ + Sbjct: 503 TRLQEMKGEFSARLREIEQKIYEEAGEEF-NLNSPKQLGVILFEKMGLPVIKKQK 556 >gi|302553133|ref|ZP_07305475.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302470751|gb|EFL33844.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 560 Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 68/505 (13%), Positives = 135/505 (26%), Gaps = 120/505 (23%) Query: 152 HVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ L Y ++ R R+ L+ E L+ +N G ++ + Sbjct: 127 HLPLADLLAVYAEQQRRHERAGHPDRMRLLTAAESAGMLVAAEMNRSGLPWRAEVHRAVL 186 Query: 211 ELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 + + +L +++ +R ++ F GI + + Sbjct: 187 HDLLGERYAGGGEPRRLAELADEVSTAFGRRVRPDLPADVVKA--FAQAGIKVSSTRKWE 244 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 ++S+ A +L + + + +GR R G + TGRW Sbjct: 245 IESV------DHPAVKPLLEYKKLYRIWVAHGWSWLQDWVREGRFRPEF-LAGGTVTGRW 297 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 +P+ +R ++A G +LVVAD Sbjct: 298 VTNGGGGLQIPK------------------------------VIRRAVVADPGWRLVVAD 327 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 +E RVLA I+ + ++ D+Y + D+ RA K+ L Sbjct: 328 ADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS--------DRAFSGDRAQAKLAVLGAV 379 Query: 441 YQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y + K +A+ + +A ++ E + + Sbjct: 380 YGQTSGDGLKNLAAL-----------------RRRFPRAVAYVDEAARAGEEGRLVRTWL 422 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G C + E +R A Sbjct: 423 GRTCPPA--------------ARATDEAAEEAGIPLSEDDTQRDAQQWVPGYASTNARAR 468 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 R V+G + +R+ + Sbjct: 469 -----GRFARNFVVQGSAADWALLLLAALRK--------------TCA-----------E 498 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSV 644 ++V HDE++ P+ +V Sbjct: 499 LSAELVFFQHDEVIVHCPEEETAAV 523 >gi|311112135|ref|YP_003983357.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931] gi|310943629|gb|ADP39923.1| DNA-directed DNA polymerase [Rothia dentocariosa ATCC 17931] Length = 650 Score = 87.5 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 60/451 (13%), Positives = 111/451 (24%), Gaps = 84/451 (18%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233 E L+ I G D I + +L E I Sbjct: 240 ESAGSLVAAEIEYYGIPFDTAAHDAHLTEILGPRPPEGEHPAKLMELAEQIRADLFAPHL 299 Query: 234 SSRQTYALRMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L L G+++ +G + + + IL Sbjct: 300 NPDSPQELLRALHAA-GVNVPSTRSYVLKGWAEETATQRERRWALIEPILRYKKLYRIFT 358 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + +++ +GR R L+ GA TGRW LP Sbjct: 359 ANGWSWADSWVRNGRFRPHLEVGGA-ATGRWGASGGGALQLP------------------ 399 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +RS I+A G+ +V+D + IE R+LA ++ ++ A + Sbjct: 400 ------------AEIRSAILAPEGEVFLVSDGSQIEPRILAALSHDEALASAGRGTD--- 444 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 A ++ V+ +RA KV LA+ Y G + + Sbjct: 445 -MYAGIAELARLEGVALTERAQAKVGLLAIMYGGRSGEIGALLP---------------- 487 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------------ 517 + + +A +G + ++ Sbjct: 488 HVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRTVADRSTPAAESRAVSL 547 Query: 518 -LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV----LPSSRRLVYSD 572 + ++ L + L L Sbjct: 548 SRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFLHDELLLCGPK 607 Query: 573 VKGDCSYLNTATSQLMRER-TYGGKLTENIV 602 ++ + S R +G E V Sbjct: 608 LEAERVERILRESAAEAARLLFGTVPVEFPV 638 Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 34/141 (24%), Gaps = 16/141 (11%) Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 G + + R R + + R D + + + +T Sbjct: 478 RSGEIGALLPHVAKLFPRAMEFTERAARIGEVGGQVTTFLGRTSPAPDERFKRTVADRST 537 Query: 585 SQLMRER-----TYGGKLTENIVQAISRDILCEGMKNATKN-----------GYDIVLTV 628 +YG +VQ + + M IV + Sbjct: 538 PAAESRAVSLSRSYGRMTRNFVVQGTAAEWALCWMGRVRSRLLTETVFGMPMRTKIVYFL 597 Query: 629 HDEIVSETPDTPYFSVGTLCS 649 HDE++ P V + Sbjct: 598 HDELLLCGPKLEAERVERILR 618 >gi|291438121|ref|ZP_06577511.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291341016|gb|EFE67972.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 563 Score = 87.5 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 64/505 (12%), Positives = 125/505 (24%), Gaps = 144/505 (28%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L E L+ +N G D+ + + + +L +++ Sbjct: 141 RMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVS 200 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F G+ + ++S+ A +L Sbjct: 201 AAFGRRVRPDLPADVVKA--FAQAGVKVSSTRRWEIESV------DHPAVKPLLEYKKLY 252 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + + DGR R G + +GRW +P+ Sbjct: 253 RIWVAHGWSWLQDWVRDGRFRPEFH-AGGTVSGRWVSHGGGALQIPK------------- 298 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G +LVVAD +E RVLA I+ + ++ Sbjct: 299 -----------------VIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 341 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464 D+Y + + F+ D K+ L Y + K +A+ Sbjct: 342 TDLYQSVSDRVFSGDRD--------RAKLAVLGAVYGQTSGDGLKNLAAL---------- 383 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + +A ++ E + +G C + Sbjct: 384 -------RRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCPPA--------------ARTT 422 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + S + +P Sbjct: 423 DDAVEEAGIPVAGGSGTSGGSGASGDSGEEAEGGRPWVP------------------GHA 464 Query: 585 SQLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIV 625 S R R G +VQ + + +V Sbjct: 465 SADARAR--GRFARNFVVQGSAADWALLLLAALRRALSDRAAE---------------LV 507 Query: 626 LTVHDEIVSETPDTPY-FSVGTLCS 649 HDE++ P+ V + Sbjct: 508 FFQHDEVIVHCPEEEARDVVAAIRE 532 >gi|239929792|ref|ZP_04686745.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 577 Score = 87.5 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 64/505 (12%), Positives = 125/505 (24%), Gaps = 144/505 (28%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L E L+ +N G D+ + + + +L +++ Sbjct: 155 RMRLLIAAESAGMLVAAEMNRAGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVS 214 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F G+ + ++S+ A +L Sbjct: 215 AAFGRRVRPDLPADVVKA--FAQAGVKVSSTRRWEIESV------DHPAVKPLLEYKKLY 266 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + + DGR R G + +GRW +P+ Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEFH-AGGTVSGRWVSHGGGALQIPK------------- 312 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G +LVVAD +E RVLA I+ + ++ Sbjct: 313 -----------------VIRRATVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464 D+Y + + F+ D K+ L Y + K +A+ Sbjct: 356 TDLYQSVSDRVFSGDRD--------RAKLAVLGAVYGQTSGDGLKNLAAL---------- 397 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + +A ++ E + +G C + Sbjct: 398 -------RRRFPRAVAYVDEAARAGEEGRLVRTWLGRTCPPA--------------ARTT 436 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 + S + +P Sbjct: 437 DDAVEEAGIPVAGGSGTSGGSGASGDSGEEAEGGRPWVP------------------GHA 478 Query: 585 SQLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIV 625 S R R G +VQ + + +V Sbjct: 479 SADARAR--GRFARNFVVQGSAADWALLLLAALRRALSDRAAE---------------LV 521 Query: 626 LTVHDEIVSETPDTPY-FSVGTLCS 649 HDE++ P+ V + Sbjct: 522 FFQHDEVIVHCPEEEARDVVAAIRE 546 >gi|256375220|ref|YP_003098880.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] gi|255919523|gb|ACU35034.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827] Length = 555 Score = 87.1 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 63/507 (12%), Positives = 115/507 (22%), Gaps = 127/507 (25%) Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 L L L E L + G D+ +L Sbjct: 133 ADPLDAVLRVHAEQRRVAAGLPPSLRLLFAAESASALAGAEMTHFGLPWRRDVHEELLAD 192 Query: 213 IA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + +L + I G + + F G+D+ +K Sbjct: 193 LLGPRTAPGVRPRRLAELADRITAAFGGRAVNPDNPA-SIVRAFAREGVDVPSARAWVIK 251 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + A + +L + + + +A +DGR R G +GRW+ Sbjct: 252 EL------DHPAAEPLLAYKELARLWVAHGWSWLDAWVADGRFRPDYV-VGGVVSGRWAT 304 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 +PR +R+ + A G +LV AD A Sbjct: 305 RGGAALQIPR------------------------------SLRTAVRADPGWRLVAADAA 334 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA ++ + + + R K+ L+ Y Sbjct: 335 QLEPRVLAALSRDRRLAEVAGEDDLYTTLAADSFHG---------DRGQAKIAMLSAMYG 385 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G + + + + A + + V +G Sbjct: 386 GTSGGAAELLAVL----------------RRRFPDAVGYVERAAREGERGGVVRSRLGRT 429 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 +AW D + + V + + L Sbjct: 430 SPAPSQAWHEA----TGSADDGEDALRRSQRAAREWGRFTRNFVVQASAADWTAALLGAL 485 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 RRL + Sbjct: 486 R--RRLHERAPE-----------------------------------------------A 496 Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLC 648 +V HDE++ P V + Sbjct: 497 HLVFFQHDEVLVHCPAGLAEVVCAEVV 523 >gi|320010013|gb|ADW04863.1| DNA-directed DNA polymerase [Streptomyces flavogriseus ATCC 33331] Length = 568 Score = 87.1 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 79/544 (14%), Positives = 143/544 (26%), Gaps = 137/544 (25%) Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTI 194 + S ++ + L Y ++ T R+ L+ E L+ + Sbjct: 115 AEPGTQSSLFEPRSGTDLPFEALLQVYAEQLRRHTAAEHPGRMALLTAAESAGMLVAAEM 174 Query: 195 NDRGYRIDLDLVLKLQELIAQERK-------KLDEDIVKLTDGIIRSSRQ-TYALRMYLF 246 + G D+ + + ER +L E +++ R R A + F Sbjct: 175 DASGLPWRADVHRAVLNELLGERYPGGGEPRRLAEAADEVSAAFGRRVRPDLPADVVKAF 234 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 GI + L+++ A + ++ + DGR R Sbjct: 235 AQAGIKVGSTRRWELEAL------DHPAVEPLIRYKKLYRVWTAHGWGWLQDWVRDGRFR 288 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G + +GRW+ +P+ +R Sbjct: 289 PGY-QPGGTVSGRWTTNGGGALQIPK------------------------------VIRR 317 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 ++A G +LVVAD +E RVLA I+ + ++ + D+Y +AF+ D Sbjct: 318 AVVADEGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYKALSDRAFHGDRDH--- 374 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 K+ L Y G L+ + Sbjct: 375 -----AKIALLGAVY----------GQTSGDGLKNLAAL--------------------- 398 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 R + + D A +EG + Sbjct: 399 ------------------------RRRFPQAVAYVDD----AAKAGEEGRLVRTWLGRTS 430 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 P V + I S + +Y T R G +VQ + Sbjct: 431 PPAVGADEDGEAGIPQESEEP---PSGEATGTYGFTPGYASSNARARGRFTRNFVVQGSA 487 Query: 607 RDILCE------------GMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654 D GM ++V HDE++ P + + + Sbjct: 488 ADWALLLLAALRRALAAGGM------RAELVFFQHDEVIVHCP---AEEASAVVEAIREA 538 Query: 655 PSWA 658 A Sbjct: 539 GELA 542 >gi|290958457|ref|YP_003489639.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260647983|emb|CBG71088.1| putative DNA polymerase I [Streptomyces scabiei 87.22] Length = 571 Score = 86.7 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 69/490 (14%), Positives = 128/490 (26%), Gaps = 131/490 (26%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ +N G D+ ++ + + +L E++ Sbjct: 155 RMRLLTAAESAGMLVAAEMNRAGLPWRPDVHREVLRELLGERYAGGGEPRRLAELAEEVS 214 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F G+ + ++S+ A +L Sbjct: 215 NAFGRRVRPDLPADVVKA--FARAGVRVKSTRRWEIESV------DHPAVKPLLEYKKLY 266 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + + DGR R +G + TGRW +P+ Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEFLAHG-TVTGRWVTNGGGALQIPK------------- 312 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G +LVVAD +E RVLA I+ + + Sbjct: 313 -----------------VIRRACVADPGWRLVVADADQMEPRVLAAISRDPGLMDVAGRP 355 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464 D+Y +AF+ + K+ L Y + K +A+ Sbjct: 356 GDLYQAVSDRAFSGDRE--------QAKLAVLGAVYGQTSGDGLKNLAAL---------- 397 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + A + E + +G C Sbjct: 398 -------RRRFPHAVRYVDDAARAGEEGRLVRTWLGRTCPP------------------- 431 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 G + + P + + Sbjct: 432 --AAGDPDAAGEEAGIPQADDGPGAPEQGRGQGQETEWVPG-----------------YA 472 Query: 585 SQLMRERTYGGKLTENIVQAISRDI----------LCEGMKNATKNGYDIVLTVHDEIVS 634 S R R G +VQ + D +GM ++V HDE++ Sbjct: 473 STDSRAR--GRFARNFVVQGSAADWTLLLLAALRRTLDGMA------AELVFFQHDEVIV 524 Query: 635 ETPDTPYFSV 644 P +V Sbjct: 525 HCPAAETDAV 534 >gi|156390270|ref|XP_001635194.1| predicted protein [Nematostella vectensis] gi|156222285|gb|EDO43131.1| predicted protein [Nematostella vectensis] Length = 203 Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 74/275 (26%), Gaps = 88/275 (32%) Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT--YAKAFNTPIDKVSKEQRAIGKVMEL 437 D IE R+LA ++ + ++ F + I + T ++ P KV ++R K + Sbjct: 1 DFQSIELRLLANLSDDPDLLRVFNDSTSIDIFTKLTSQWLGVPPVKVDFKERERTKRIVY 60 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ++ Y G + Sbjct: 61 SVIYGVGRERL--------------------------------------------GNTLC 76 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + + +++ K G+ + + E + Sbjct: 77 VEPNEAKGFMESFLGKFPGINEFSRKCIE--------------------------DCNTN 110 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + R+ +K + + Q R+ +VQ + D+ M Sbjct: 111 GFVSTIFKRKRWIPHIKSRDFQIRS---QAERQA------VNFVVQGSAADLCKSAMIQI 161 Query: 618 TKN-------GYDIVLTVHDEIVSETPDTPYFSVG 645 ++L +HDE++ E DT V Sbjct: 162 VHALEKDVSLKARLLLQIHDELLLEVADTDIDRVK 196 >gi|156319560|ref|XP_001618134.1| hypothetical protein NEMVEDRAFT_v1g225484 [Nematostella vectensis] gi|156197578|gb|EDO26034.1| predicted protein [Nematostella vectensis] Length = 758 Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 61/441 (13%), Positives = 125/441 (28%), Gaps = 78/441 (17%) Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELF--------KRLIPLSDGERDLWLLDQT 193 D A+ + + + Y +D + + L Sbjct: 21 QWKGDAEAASKSRDIEKYWAYNAKDTWHGARILVQQLRTAAPYTFANYKNKFKLTYPALY 80 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 N G +ID++ +L+ ++ + + + Y++ I G Sbjct: 81 CNFEGLQIDMEKRNELRTASQKQLDTARSRLHVKFADPAFNPGSWQQVEKYIYNIFGASK 140 Query: 254 VDMSEG---TLKS-ILSHSNITQLAKDL---ILNRLASSGSAILKLNTLSEAVSSDGRLR 306 + + T + +L+ + L L IL + + + L GRL Sbjct: 141 PKIGKSKSGTDEKNLLAVAEQHPLLARLTTDILAYREAQKAIGTYYDFLRFQ----GRLL 196 Query: 307 GTLQFYGASRTGRWSGC------VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 L +G + T R + Q QN+P Sbjct: 197 WALNPFG-TETERMACSASSLWCGTQVQNIPSYA-------------------------- 229 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNT 419 + ++A +G +L AD + E R A+ A E I A + T FN Sbjct: 230 ----KQMLVADDGYELFEADNSQSEGRTTAYCAQEPALIAALETAGRDFYRTLGTLFFNI 285 Query: 420 PIDKVSKEQRAIG-KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 P ++V+ R K + Y G K F +N+ +E + Sbjct: 286 PYEEVTDFFRNKVLKRIVHGTNYMMGGKTFT--------------ENIGIVVLYETAPKV 331 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + + + A + I + + + + + + ++ G + Sbjct: 332 ---GIKLVEIPTKDAEMEMTIRQFAKYLLDLYHEPFPRIRKWYGEIKTEV---ATTGYIV 385 Query: 539 SARRVANVPRLVMRRHKRDVH 559 S + R + Sbjct: 386 SPLGHVRKCFGNITRDHNMLR 406 >gi|56752739|gb|AAW24581.1| SJCHGC05886 protein [Schistosoma japonicum] Length = 191 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 23/198 (11%), Positives = 55/198 (27%), Gaps = 30/198 (15%) Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A + + + + + + + G+ + Q R+ Sbjct: 3 CHTLASQLNISEKSAQKLIDGFLNIYTGIQKFITTTVSTAHREGQIKTLNGHIRLLPALN 62 Query: 549 LV--MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + S ++ + A ++ R+ +I+Q + Sbjct: 63 SKSIFSCVSANEFSCNWSKKQRNH-----------FAVTKAERQA------VNSIIQGSA 105 Query: 607 RDILCEGMKNATKNG--------YDIVLTVHDEIVSET-PDTPYFSVGTLCSL-MTKNPS 656 +I M + +VL HDE++ E P++ G L M+ Sbjct: 106 AEIAKLAMLAVDEAISSANIPGYARLVLHEHDELIYEIFPESSVKQFGVLIRQAMSSTGK 165 Query: 657 WAK-GLPLKAEGYEAKRY 673 + +PL + + Sbjct: 166 YCNINVPLPVKLKIGPNW 183 >gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] Length = 568 Score = 85.2 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 54/429 (12%), Positives = 100/429 (23%), Gaps = 114/429 (26%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L ++ +L + + L L GI++ + LK + A Sbjct: 216 ARLEALTTELRRLLNSPGLNPDSPQELMRALH-RNGIEVKTTRQWELKE------SSHPA 268 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + +L + +A ++GR + G +GRW+ +PR Sbjct: 269 IEPLLAYKKLARLHAANGWAWLDAWVNNGRFQPEYV-VGGVVSGRWASRGGGALQIPR-- 325 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + A G KL+VAD + +E RVL +A Sbjct: 326 ----------------------------QIRGAVHADPGHKLIVADASQLEPRVLVALAQ 357 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +A + + RA KV L Y Sbjct: 358 DSKMAEAARDKDLYAGIAAQGFGG---------DRAKAKVALLGAIYGATTG-------- 400 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +A + +G + W Sbjct: 401 --------ESGRLMPQLTRTYPRAVGFVEQAAREGEAGGTVTSRLGRSSPPPSDRWLQSQ 452 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + +R +V L RR Sbjct: 453 KST---------TAEEQRRADAIARSRGRFTRNFVVQGSAADWAACWLAELRRR------ 497 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + +A +V +HDE++ Sbjct: 498 --LRAMRSAGGPTGE----------------------------------LVFFLHDEVMV 521 Query: 635 ETPDTPYFS 643 PD + Sbjct: 522 HCPDGSVDA 530 >gi|297476119|ref|XP_002688485.1| PREDICTED: polymerase (DNA directed) nu [Bos taurus] gi|296486338|gb|DAA28451.1| polymerase (DNA directed) nu [Bos taurus] Length = 158 Score = 84.8 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 22/114 (19%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RR ++ +Q R+ +VQ + D+ M Sbjct: 2 GRRRPLPRIRAHDP---QLRAQAERQA------ANFVVQGSAADLCKMAMIRIFTAMATS 52 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTK-----NPSWAKGLPLKA 665 ++ +HDE++ E D+ L M +PLK Sbjct: 53 PTLTARLLAQIHDELLFEVEDSQVPEFTALVQGTMEALQHVPALELQLQVPLKV 106 >gi|258655373|ref|YP_003204529.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] gi|258558598|gb|ACV81540.1| DNA-directed DNA polymerase [Nakamurella multipartita DSM 44233] Length = 550 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 64/439 (14%), Positives = 105/439 (23%), Gaps = 128/439 (29%) Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L ++I + + + F G D+ +K I A Sbjct: 202 LAALADEISQAFGFPV-NPDS-AVDVRAAFRRVGFDIESTRSWVIK------AIDHPAVR 253 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L E R GA +GRW+ +PR Sbjct: 254 PVLAYKELVRLHTANGWAWLEQWVRGNRFHAEY-LSGAVVSGRWATRGGGALQIPR---- 308 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R ++A G +L+VAD A +E RVLA I+ + Sbjct: 309 --------------------------VLRQAVVADPGYRLIVADAAQLEPRVLAAISADL 342 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 A + RA KV L Y Sbjct: 343 VLQAISAEDDLYAGLAADGFGG---------NRAAAKVAMLGAMYGQTTG---------- 383 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + QA + V ++G AC +W Sbjct: 384 ------EGGRLVSTLRARYPQAMGYVDGAARAGERGEVVHSVLGRACPPPGTSW------ 431 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + ++ + P+ R L Sbjct: 432 ----------EAVRIGRQQDAT------------------------PAERTLA------- 450 Query: 577 CSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHD 630 R G+ T +VQA + D + G ++V HD Sbjct: 451 -----------DRLAGDRGRFTRNFVVQASAADWAAVWLAGLRTSLTEVAGAELVFFQHD 499 Query: 631 EIVSETPDTPYFSVGTLCS 649 E++ P+ V L Sbjct: 500 ELIVHAPEPVAEPVAGLIE 518 >gi|197935871|ref|YP_002213707.1| DNA polymerase [Ralstonia phage RSB1] gi|197927034|dbj|BAG70376.1| DNA polymerase [Ralstonia phage RSB1] Length = 815 Score = 84.4 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 55/393 (13%), Positives = 111/393 (28%), Gaps = 71/393 (18%) Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + V + + TL + T R S QN+P+ ++SE + Sbjct: 434 KTGHDKGMLTLVHPNDIVHHTLNMC-RTVTARLSSSDPNLQNIPKGQKSEAKTMFESRFG 492 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G K++ +D + +E V A + I A G D Sbjct: 493 ADG------------------------KIIQSDFSSLEVYVQAMLTLCKQLIADLAAGID 528 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ +KE+R +V+ L + + + Sbjct: 529 MHCMRL----------AAKEKREYDEVLMLC--------------KKGKVGVDLTQEERD 564 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 ++ S A + + + A A++ + + + E Sbjct: 565 EWDYKRTGAKSFSFQRAYGAGVAAIAAGTGIPLEEVQALADAEDARYPEIGEYF----EM 620 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL 587 A ++E + + V + ++ + V P +R Y + S Sbjct: 621 KADEIRETRTPTLDIVEHPEIKGLKCQLGKGYSVTPDGKRYSY---RESPSPKYMIERGR 677 Query: 588 MRERTYGGKLTENIVQAISRDILCEGM-KNATK----NGYD----IVLTVHDEIVSETPD 638 R ++ VQ +++ M + +V TVHD + Sbjct: 678 PRTGFVPTQIKNYEVQGTGGEVMKAAMWLAVRAFYYYKNFKGLALLVNTVHDAQYVDAHK 737 Query: 639 T-PYFSVGTLCSLM---TKNPSWAK--GLPLKA 665 T + G L + M + W LP+ Sbjct: 738 TVAVKAAGLLHACMVEASTLIEWWFKWELPIGV 770 Score = 54.0 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 38/323 (11%), Positives = 82/323 (25%), Gaps = 52/323 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK--------LWDRTEQSA 52 M D+ET + + + I + D V+ + Sbjct: 1 MKYTVFDLETTTHAAYKHK-ANPFIPENHIVAVGWRHGDTDVEARLADRADYLYAAPGCS 59 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERIL------------FKKTLGIDIPSKRWICTSVLA 100 PS L V HN F+ + + + + T ++ Sbjct: 60 QPSSWFTDLLKHGKWVVGHNIKFDLLYALANENSYPEQNLEAWMDWVVKGGLPWDTQIVE 119 Query: 101 RTNG--LPSS----LKNACLALNFSEHLTK------------MEEGKALIARF---CKGS 139 PSS L + + + + + LI S Sbjct: 120 YLLRGMEPSSTMLPLDEVAVHYGGNTKVDEVKAMWEAGIDTWDIPRELLIDYLVGRTVPS 179 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D D + +F KR E +L + ++ + G Sbjct: 180 EDGEGEDFELGDIGNTELVFRAQLKRAKE-----QGQLRSII-LNMGAYVATIEMERNGM 233 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR---SSRQTYALRMYLFLITGIDLVDM 256 ++ LKL E +A + ++ ++ + + + +F + Sbjct: 234 HVNKAKGLKLAEKMAAKLIEMSAELAGFIPADLPFDFNWNSRFHKSALIFG-GKVKYEAR 292 Query: 257 SEGTLKSILSHSNITQLAKDLIL 279 + + + A ++L Sbjct: 293 TAIVDEETGEQVYAQKDATHVLL 315 >gi|291335495|gb|ADD95107.1| 5B protein [uncultured phage MedDCM-OCT-S04-C348] Length = 429 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 61/291 (20%), Gaps = 39/291 (13%) Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEGT---LKSILSHSNITQLAKDLI 278 + + + L G +G +L + Sbjct: 41 QPFCKKRIEVFNPGSRQQIVDRLKKKYGWVPESKTDKGNPVLNDDVLEKL--PYPEAKPL 98 Query: 279 LNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + + VS DG + G + G TGR S +P Sbjct: 99 AEYMLLKKRLGQIKDGNNAWIKLVSPDGYIHGDMVTNGC-ITGRCSHRNPNTAQIP---- 153 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 RS A + L+ +D +E R LA Sbjct: 154 -------------------AGYSPYGKECRSLFHAPDDWILIGSDAKALELRCLAGYLAF 194 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + +K E R I K + A+ Y G T+ Sbjct: 195 WD----GGEYGQMVTDDSVDIHTYNQEKFGVETRDISKRLLYAVLYGAGFYKAGTIVDPD 250 Query: 456 GLDLQQFSQ--NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 D Q S + + + L Sbjct: 251 EKDPDILKQLGKTAINSFMTGVPALQELKNKLAENLVARGYLLGLDRRPLY 301 >gi|229604938|ref|YP_002875638.1| putative DNA polymerase [Vibrio phage VP93] gi|227976983|gb|ACP44085.1| putative DNA polymerase [Vibrio phage VP93] Length = 811 Score = 84.0 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 59/533 (11%), Positives = 135/533 (25%), Gaps = 87/533 (16%) Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATR----ELFKRLIPLSDGERDLWLLDQTINDRG 198 P D + + ++ + C DV + + +++ + E + + G Sbjct: 309 DPIDGAKYITPETYEKYRL-CPADVVVYKSGKNKGSRKVFRANTNELKMKWGEAVYQCPG 367 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 + +L E + + E + M G Sbjct: 368 LC----KISELPEHFQDKFGERGEFRQNRNLCDGSPVFSSSGDCMAGLAKQGFTFAS-DI 422 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYG 313 L ++ + L + I K + + + V + G + L Sbjct: 423 SRLATLEKDTGTYYLRHEYDDE------GNITKSSGMLQYVIPEKPDGSGIIHHRLNTC- 475 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QNLPR E ++ ++ Sbjct: 476 ATVTGRLSASNPNLQNLPRAEEDKDGNAKSRVKEMFTSRFG-----------------ED 518 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 +++ D + +E + G+ ++ G D++ Sbjct: 519 GRIIEVDYSALEVVMGVVHTGDMKLLELLKAGTDMHC----------------------- 555 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 Y+ + + + + +A S A Sbjct: 556 -------YRLAFQENLDYEEVYRRCHDEGFEFHALWKSMRTAIKAPSFAAQYGASAAGIA 608 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + A + + + + G++ + + RR Sbjct: 609 FATGCTVEFAQAFLDNEAALFPDTAKFRQVIRDEVERTGNLPGNLKREMTDDGSVRLYRR 668 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG-GKLTENIVQAISRDILCE 612 + P+ R YS + + + + Y +L Q + ++ Sbjct: 669 G----YWTSPAGMR--YSFRQVERWVKRADGRGMEKVMDYKDTQLANYWCQGEAFFLMAV 722 Query: 613 G--MKN---ATKNGYD----IVLTVHDEIVSETPDTPY--FSVGTLCSLMTKN 654 M KN YD ++ VHD + + + + +M + Sbjct: 723 AFGMILRHMIAKNWYDNQVCLITNVHDAAYLDAANEEVGREAALAVKDIMERA 775 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 39/306 (12%), Positives = 77/306 (25%), Gaps = 52/306 (16%) Query: 4 LFIDIET------------RSPQP-LPKVGVWAYAEQA----VITLC-AYAWDDEPVKL- 44 LF+D+ET P + + G ++ + + +D + Sbjct: 5 LFLDLETQNYEYHGSKASPYCPDNYIVESGFRVDRKKPDGTTEVGGIESVRYDSREAFVN 64 Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICTSVL 99 TE +P D + VAHN+ +E F + R CT Sbjct: 65 APTTEWLPIPEDCW--------LIVAHNAAYEVSWFLQFARESFESFLRRGGRVFCTMHG 116 Query: 100 ARTN----GLPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 L SL K+ + ++ + + Sbjct: 117 EYLATDQTSLYPSLDETAPKYGGTHKVDGIKLLWEQGVLTSEIDPILLHEYLAGPNGDVA 176 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 F C E + PL D L G +++ + K Q + Sbjct: 177 NTALCFYGQCAVLAE------QGKFPLVWERMDALLSFAFCEWFGLYVNMPVAQKNQAVQ 230 Query: 214 AQERKKLDEDIVKLTDGIIR-----SSRQTYALRMYLF---LITGIDLVDMSEGTLKSIL 265 E +L + + + + + L+ + + +K Sbjct: 231 EAEIAELTTRLRTYLPDDLPEEIDFNWGSDFHMSALLYGGPIKYKKKVHYDKPTYVKVDA 290 Query: 266 SHSNIT 271 + Sbjct: 291 YQLHEH 296 >gi|148747811|ref|YP_001285777.1| DNA polymerase [Phormidium phage Pf-WMP3] gi|146230044|gb|ABQ12452.1| DNA polymerase [Phormidium phage Pf-WMP3] Length = 363 Score = 83.6 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 60/376 (15%), Positives = 105/376 (27%), Gaps = 80/376 (21%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM---PSDLLQYL- 61 +DIE L Y + L + + + ++ Sbjct: 12 LDIE---SDDLSA----QYDVDTRVYLIGVQFLADYGLY---AAGDYVYGSLEEMRDLCV 61 Query: 62 ---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLKNA-C 113 D V V HN+ F+ + GI I R+ CT V A T S SL + Sbjct: 62 SLANDTDVTFVIHNASFDVPAL-RLRGIPIK--RYFCTQVAAHTWHPKSSEENSLDSLTG 118 Query: 114 LALNFS---EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + L+ E +GK + D + N +F Y D++AT Sbjct: 119 MKLDLRAELEVYRPDLKGKPK-GYEYRLYDDKSHRGWSTVND-----IFHSYLVSDLQAT 172 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDR----------GYRIDLDLVLKLQELIAQERKKL 220 +L+ L + IN G +D+D V ++Q + R + Sbjct: 173 GKLYTTLEDNFSSDERALRCLLDINQPYVELIIEFEQGSWVDVDRVDEVQSKLQTLRDEA 232 Query: 221 DEDI--------------------------VKLTDGIIRSSRQTYALRMYL-----FLIT 249 +I + + + + L + T Sbjct: 233 WSEITTHIRYDVTEIKRYKNGYKKRNGVVTYDHCPLVDFNPGSSDQVAAALTYLYGWEPT 292 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + T +L N L L+ + + + + + DG + Sbjct: 293 KLSDKTGKPSTSSEVLEELNYP-LVSSLVKYQKMAKLMQ--FIPQI--QANLDGNILRPS 347 Query: 310 QFYGASRTGRWSGCVF 325 A+RT R S Sbjct: 348 YNQSATRTTRLSSSKP 363 >gi|296270208|ref|YP_003652840.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] gi|296092995|gb|ADG88947.1| DNA-directed DNA polymerase [Thermobispora bispora DSM 43833] Length = 538 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 120/476 (25%), Gaps = 139/476 (29%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233 E L+ + G D+ L + + L ++I + Sbjct: 160 ESAGALIAAEMRHHGMPWRQDVHDALLTELLGPRPAPGMRPARLQALADEISAAFGHPV- 218 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L F GIDL L+ + A +L S Sbjct: 219 NPDSPQQLL-KAFKAAGIDLPSTRSHVLERV------DHPAVKPLLEYKELSRLHSFYGW 271 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + GR G +GRW+ +P+ Sbjct: 272 AWAAQWVRGGRFHPEYV-VGGVVSGRWATSGGGALQIPK--------------------- 309 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R ++A G LVVAD A +E RVLA ++G+ A A GE + Sbjct: 310 ---------VMRRAVVADQGWTLVVADAAQLEPRVLAAMSGDAA--LARAAGEADLYSAL 358 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A+AF + K+ L+ Y G + + + + Sbjct: 359 AEAFGGSRES--------AKIAMLSAMYGGTSGDAPRLLAVM----------------RQ 394 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + +A + E V +G C + WR Sbjct: 395 RFPRAYAFVEEAARAGEEGRVVRSWLGRTCPPPSQRWRE----------------LTAGP 438 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 +GG ++ R V++ + + L + R + D Sbjct: 439 DGGRVARERGRFTRNFVVQATAAEWALTLLAVLRGLLPDP-------------------- 478 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +V HDE++ P V Sbjct: 479 ----------------------------ARLVFFQHDEVMVHCPLHQAERVRAAVE 506 >gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 536 Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 37/213 (17%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134 + + G+ +P +LA ++ + Sbjct: 355 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 395 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + T +A + E + L + ER L + + Sbjct: 396 ----------GEWTEEAGERAALSERLFANLWERLEGE-ERLLWLYREVERPLSAVLAHM 444 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252 G R+D+ + L +A+E +L+ ++ +L + L LF G+ Sbjct: 445 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 503 Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRL 282 + T ++L + IL Sbjct: 504 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYR 536 >gi|88854986|ref|ZP_01129651.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88815514|gb|EAR25371.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 558 Score = 83.2 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 62/439 (14%), Positives = 120/439 (27%), Gaps = 72/439 (16%) Query: 164 KRDVEATRELFK----------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D A EL + RL+ L E L+ + G + ++ + Sbjct: 133 SLDATAEFELQRAAVANSTGSGRLLRLLAAESAGALIAAEMRFAGLPWSAEAHDRILTDL 192 Query: 214 A-----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + L ++I +L D + L L + GI LK Sbjct: 193 LGPRPTMESARPSKVQDLVDEIRELLDAPQLNPESPSDLLRALNVA-GIQTNSTRAWELK 251 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +L+ + ++ DGR R G TGRW+ Sbjct: 252 QL------RHPVISPLLHYKKLARLLTANGWNWLDSWVHDGRFRPDYVPGGV-VTGRWAT 304 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 LP +R +I G KLVVAD + Sbjct: 305 SGGGALQLP------------------------------HLIRGAVIPDPGWKLVVADAS 334 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 +E R+LA ++ + ++A ++G+ + + E RA K+ L Y Sbjct: 335 QLEPRILAAMSADRGMVEAGSSGDLYEGIVAS---------GAVETRAHAKLAMLGAMYG 385 Query: 443 GGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIG 500 + + Q + E E + + + + L Sbjct: 386 ATTGESGRLMPKLARAYPRAIQLVEDAARAGERGEIVSTQLGRSSPRGEDTGTYDESLTP 445 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 +++ R+ G + A + R+ ++ + Sbjct: 446 AERAALRERGRS--WGRFTRNFIVQGTAAEWALCWMASIRSRLVSLGEGKWLTESPHLVF 503 Query: 561 VLPSSRRLVYSDVKGDCSY 579 L + + + Sbjct: 504 FLHDEVVVHAPEELAETVA 522 Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 58/214 (27%), Gaps = 40/214 (18%) Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 M++ G+ S ++ + +H + G + Sbjct: 341 LAAMSADRGMVEAGSSGDLYEGIVASGAVETRAHAKLAMLGAM-YGATTGESGRLMPKLA 399 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 +A+ L E A + G +S + + PR + P+ R Sbjct: 400 RAYPRAI--------QLVEDAARAGERGEIVSTQLGRSSPRG--EDTGTYDESLTPAER- 448 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY----- 622 + R R++G IVQ + + M + Sbjct: 449 ----------------AALRERGRSWGRFTRNFIVQGTAAEWALCWMASIRSRLVSLGEG 492 Query: 623 -------DIVLTVHDEIVSETPDTPYFSVGTLCS 649 +V +HDE+V P+ +V L Sbjct: 493 KWLTESPHLVFFLHDEVVVHAPEELAETVAALID 526 >gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 47/225 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D L L + +++ D+ L + + Sbjct: 1 ERNGWLLDQRLCHILCAKFKERMNEIESDLQALFPPIVEERYSEKTGKRLKDKVTVFNVG 60 Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + + L ++ A ++ L ++N Sbjct: 61 SRQQVAERLSAKGAVWTELTPTGKPMVDEKTLKENSHVPEAAQVLEYLLLQKR--YAQVN 118 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + E V DGR+ G + GA TGR + +P Sbjct: 119 SWLEHVQDDGRVHGRVTTNGA-VTGRMTHQNPNMAQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + R+C I G+KLV D +G+E R+LA G++ Sbjct: 156 -SVNSEYGEDCRNCWIVPEGRKLVGVDASGLELRMLAHYMGDEEF 199 >gi|47934730|gb|AAT39803.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934732|gb|AAT39804.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934734|gb|AAT39805.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 49/223 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD-------------------GIIRSS 235 G++++ L+L ++ + + ++ + + Sbjct: 1 ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60 Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +G + +L+ + AK L + I ++ Sbjct: 61 GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASLDYP-EAKALAEYMMLQKR--IAQI 117 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ EAV DGR+ G + GA TGR + +P Sbjct: 118 DSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP--------------------- 155 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + R G KLV D AG+E R+LA + Sbjct: 156 --NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMND 196 >gi|47934726|gb|AAT39801.1| DNA polymerase [Uncultured T7-like podovirus] Length = 201 Score = 82.5 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 49/224 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD-------------------GIIRSS 235 G++++ L+L ++ + + ++ + + Sbjct: 1 ERNGFKLNQAAALQLLSVLKTKLDSIQVEMATIFPPIITSGRTHKTSGKPLKDIIEPFNP 60 Query: 236 RQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +G + +L+ + AK L + I ++ Sbjct: 61 GSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASLDYP-EAKALAEYMMLQKR--IAQI 117 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ EAV DGR+ G + GA TGR + +P Sbjct: 118 DSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP--------------------- 155 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + R G KLV D AG+E R+LA + Sbjct: 156 --NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 197 >gi|307106798|gb|EFN55043.1| hypothetical protein CHLNCDRAFT_134898 [Chlorella variabilis] Length = 158 Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 45/181 (24%), Gaps = 53/181 (29%) Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + +K+ + GV + + E Sbjct: 1 MGVTPKEAAKLKQEFLESMPGVAAFLEKVVEDCRQTGY---------------------- 38 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + + RR ++ L + K +Q + D++ M Sbjct: 39 ----VETLAGRRCPLPNINLQSWRLRGEAER---------KAVNTPMQGSAADVMKAAMI 85 Query: 616 NATKN---------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP--SWAKGLPLK 664 ++ G IVL +HDE+V E + M P +PL Sbjct: 86 ALGESLQIGQAGEGGAAIVLMIHDELVIEV-------AAIVRECMEVVPVRKLHLSVPLA 138 Query: 665 A 665 Sbjct: 139 V 139 >gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335] Length = 207 Score = 81.7 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 35/214 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET PL + L V + +L Q L + Sbjct: 25 IAVDTETMGLNPLRD----------RLCLIQLCDPGGYVCAIRTERGQSSAPNLKQLLEE 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120 + + + H + F+ + LGI CT + + RT LK+ Sbjct: 75 KNITKIFHFARFDLATLQHHLGIVTAP--VFCTKIASKIARTYSPSHGLKSL-------- 124 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K G I ++ Y DV L +L + Sbjct: 125 --VKELIG---IELDKSQQSSDWGNAAALSD------EQLSYAANDVRYLYVLQNKLTEM 173 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L Q ++ ++LD + + + Sbjct: 174 LKREGRWTLAKQCLDCLPVFVELD-LRQFGSVFE 206 >gi|297201366|ref|ZP_06918763.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147869|gb|EFH28770.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 563 Score = 81.7 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 67/504 (13%), Positives = 126/504 (25%), Gaps = 156/504 (30%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ +N G + ++ + + +L +++ Sbjct: 155 RMRLLTAAESAGMLVAAEMNRAGLPWSAETHRRVLHELLGERYAGGGEPRRLAELADEVS 214 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F GI + ++S+ A ++ Sbjct: 215 AAFGRRVRPDLPADVVKA--FAQAGIKVKSTRRWEIQSL------DHPAVKPLVEYKKLY 266 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + + DGR R G + TGRW +P+ Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEF-LAGGTVTGRWVTHGGGALQIPK------------- 312 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD +E RVLA I+ + ++ Sbjct: 313 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+Y + D+ RA K+ L Y G L+ + Sbjct: 356 SDLYQSVS--------DRAFSGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL 397 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 R + + D Sbjct: 398 ---------------------------------------------RRRFPKAVAYVDD-- 410 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 A +EG + P + I G+ ++ S Sbjct: 411 --AARAGEEGRLVRTWLGRTCPPAAGAGDAEEAGIPQDDP---AGQPASGEDGWVPGYAS 465 Query: 586 QLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIVL 626 R R G +VQ + + +V Sbjct: 466 TNTRAR--GRFARNFVVQGSAADWALLLLAALRQACAGMAAE---------------LVF 508 Query: 627 TVHDEIVSETPDTPYFS-VGTLCS 649 HDE++ P + V + Sbjct: 509 FQHDEVIVHCPKEEAEAVVAAIRE 532 >gi|47934660|gb|AAT39768.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 47/231 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+D L+ ++ +++++ + + + Sbjct: 1 ERNGFKLDIDACELLRAKLSDRMGIIEDEVQAVFPPIVEERWSEKTGKRLKDKITVFNLA 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + +G + L +I Q LI L + ++ Sbjct: 61 SRKQIAERLMGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AKLIAEYLMLQKR-VGMID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + V + TGR + +P Sbjct: 118 SWLKHVDKTTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +RS G LV +DL+G+E R L+ ++ + N Sbjct: 156 -SVTKPYGEEIRSLWTVDEGNVLVGSDLSGVELRCLSHYMQDEEWQEELLN 205 >gi|167393523|ref|XP_001740613.1| DNA polymerase I [Entamoeba dispar SAW760] gi|165895221|gb|EDR22960.1| DNA polymerase I, putative [Entamoeba dispar SAW760] Length = 226 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 56/214 (26%), Gaps = 43/214 (20%) Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 T + + A + + + +++ + + +++ Sbjct: 40 DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 99 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + RR N T +S Sbjct: 100 NASTTGFVHTINNRRRRINNL----------------------------------TDSSD 125 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP 640 + +Q + DI+ M K G ++L +HDEIV E PD Sbjct: 126 KKTLAESKRIAVNSPIQGTAADIIKMCMIEIFKKIHSTWLGVQLLLNIHDEIVLEVPDHL 185 Query: 641 YFSVG-TLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 V TL LM +PL K++ Sbjct: 186 LDEVCVTLKYLMEHIVQ--LEVPLVVTVETGKKW 217 >gi|323136907|ref|ZP_08071987.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] gi|322397668|gb|EFY00190.1| 3'-5' exonuclease [Methylocystis sp. ATCC 49242] Length = 204 Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 37/209 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + ID ET +G+ + + + + D +L + +L++ L Sbjct: 19 IVAIDTET--------LGLNHRRD--RLCVVQLSIGDGDAELVQIAKGQTQAENLVKLLV 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119 D V+ + H + F+ + KT G + CT + + RT LK+ L Sbjct: 69 DPKVLKLFHFARFDMGILAKTFG--VMPAPVYCTKIASKLTRTYTDRHGLKDLARELAGV 126 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 E K S T + QA Y DV +L ++L Sbjct: 127 EIS--------------KQQQSSDWGAATLTDAQQA------YAASDVLYLHQLKEKLDA 166 Query: 180 LSDGE--RDLWLLDQTINDRGYRIDLDLV 206 + E +L R+DL Sbjct: 167 MLAREGRTELAQACFDFLPTRTRLDLAGW 195 >gi|255070583|ref|XP_002507373.1| predicted protein [Micromonas sp. RCC299] gi|226522648|gb|ACO68631.1| predicted protein [Micromonas sp. RCC299] Length = 1659 Score = 81.3 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 24/148 (16%) Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRER 591 V +GGS+ R SRR + Sbjct: 1517 VADGGSVGPREGERPGPAGGEAGGSGPQKRNLYSRRFRLDRSADER-------------- 1562 Query: 592 TYGGKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDTP-YFSVGT 646 + Q + D++ M + VL +HDE++ E + + Sbjct: 1563 ----RAVNTACQGSAADVVKRAMIAVFDELDPSLATPVLQIHDELLFEVDASRVVEAARA 1618 Query: 647 LCSLMTKN-PSWAKGLPLKAEGYEAKRY 673 + ++M + + +PL + + Sbjct: 1619 VRAIMERAGDEFGLTVPLPVKVSAGANW 1646 >gi|92115811|ref|YP_575540.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] gi|91798705|gb|ABE61080.1| 3'-5' exonuclease [Nitrobacter hamburgensis X14] Length = 206 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 35/199 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 ID ET +G+ + + + + + D + + +L Q L D Sbjct: 23 AIDTET--------MGLNPHRD--RLCVVQMSPGDGSADVIQIAQGQREAPNLKQLLADP 72 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121 T++ + H + F+ G + + CT + +R LK+ L Sbjct: 73 TIVKIFHFARFDLAALSNAFG--VMPQPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 L K S T ++ A Y DV L +L + Sbjct: 126 ---------LNIELSKQQQSSDWGAQTLSDAQLA------YAASDVLHLHALRDKLDAML 170 Query: 182 DGERDLWLLDQTINDRGYR 200 E + R Sbjct: 171 ARENRTGMAQACFEFLPTR 189 >gi|294630609|ref|ZP_06709169.1| DNA polymerase I [Streptomyces sp. e14] gi|292833942|gb|EFF92291.1| DNA polymerase I [Streptomyces sp. e14] Length = 566 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 74/514 (14%), Positives = 132/514 (25%), Gaps = 153/514 (29%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ +N G D+ ++ + + +L +++ Sbjct: 149 RMRLLTAAESAGMLVAAEMNSAGLPWRADVHRQVLHDLLGERYAGGGEPRRLAELADEVS 208 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F G+ + L+S+ A + +L Sbjct: 209 AAFGHRVRPDLPAEVVKA--FARAGVKVRSTRRWELRSV------DHPAVEPLLEYKRLY 260 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + + +GR R G + TGRW +P+ Sbjct: 261 RIWVAHGWSWLQDWVREGRFRPEF-LAGGTVTGRWVTNGGGALQIPK------------- 306 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD +E RVLA I+ + ++ Sbjct: 307 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRT 349 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+Y + D+ RA K+ L Y G L+ + Sbjct: 350 SDLYQSVS--------DRAFAGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL 391 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 R + + Sbjct: 392 ---------------------------------------------RRRFPRAVAY----V 402 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS------DVKGDCSY 579 + A +EG + P LP GD + Sbjct: 403 DEAARAGEEGRLVRTWLGRTCPPAAANSEDATQEAGLPQDDPAERPGGGSGDRTNGDRGW 462 Query: 580 LNTATSQLMRERTYGGKLTENIVQA---------------ISRDILCEGMKNATKNGYDI 624 L S R R G +VQ RD+ E + Sbjct: 463 LPGYASSDARAR--GRFARNFVVQGSAADWALLLLAALRRTCRDMAAE-----------L 509 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 V HDE++ P +V + + A Sbjct: 510 VFFQHDEVIVHCPKEEADTV---VEAIREAAELA 540 >gi|47934630|gb|AAT39753.1| DNA polymerase [Uncultured T7-like podovirus] Length = 239 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 71/260 (27%), Gaps = 54/260 (20%) Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + Y E R+ F D E D+ G+ D L Q + Sbjct: 9 WXVYEHIVAELDRQGFS--QQCRDLEHDVAKATAQQIANGFAFDFPTACNLYCEHEQRMR 66 Query: 219 KLDEDIVKLTD------------------GIIRSSRQTYALRMYLFLITGI---DLVDMS 257 +++ ++ + + + + L + Sbjct: 67 EIEAELQAIFPPIVEERWSEKTGKRLKDKVTVFNVASRQQVAERLAQKGAVWCDTTPSGK 126 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 ++ L + A L+L L L +AV DGR+ G + GA T Sbjct: 127 PKVDEATLKQNEKIAEAA-LVLEYLTLQKRY-GMLKNWLDAVQDDGRIHGRVNTCGA-VT 183 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR + +P R C + G KLV Sbjct: 184 GRMTHSSPNMAQIPSDSLY----------------------------RQCFVVPEGSKLV 215 Query: 378 VADLAGIEARVLAWIAGEDW 397 D +G+E R+LA + Sbjct: 216 GIDASGLELRMLAHYMDDPE 235 >gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4] Length = 409 Score = 80.9 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 25/190 (13%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 ++ ET L + Y E + L + + E + P L L + Sbjct: 52 LNTETTLAFDLEADSLHHYTE--KVCLIQVSTNSETALIDPLAPLDLSP--LAPILANPA 107 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 V V H + ++ + G ++ T + ++ G AL K Sbjct: 108 VRKVFHGADYDMRSLYRDFGFEVR--NLFDTMIASQFLGEKE--VGLAAAL-------KK 156 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 G L ++ K P+ EY +D +L+ +L + Sbjct: 157 RFGVELDKKYQKADWSKRPFSP----------QMIEYAMKDTSLLIKLYLQLEDELRAKG 206 Query: 186 DLWLLDQTIN 195 L +++ Sbjct: 207 RLAWVEEESE 216 >gi|71402991|ref|XP_804342.1| mitochondrial DNA polymerase I protein D [Trypanosoma cruzi strain CL Brener] gi|70867265|gb|EAN82491.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma cruzi] Length = 1607 Score = 80.9 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 49/403 (12%), Positives = 96/403 (23%), Gaps = 84/403 (20%) Query: 270 ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + IL + V S + + TGR + Sbjct: 1232 HGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLASA 1291 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381 QN+P++++S +R ++ G+K + AD Sbjct: 1292 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 1325 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E LA +A + ++ + D + A D E K Sbjct: 1326 SQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMMR---PDLQYTEVLLRAK-------- 1374 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + S + L Sbjct: 1375 ---------------------KNKEPEFVKLRQQAKIFSFQRQYGAGVKMISQSTGLTQD 1413 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + R ++GV A + NV + V Sbjct: 1414 QVRNLIEKERETYRGVDAFN----SMVALSANNFDASIQDGSRNVRGHQFFKGMFPVIT- 1468 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMK---- 615 R V+++ + + L VQ + +I + GM Sbjct: 1469 ---GSRYVFTESDVPEGIMREKSMSAKSTNFSPTHLKNYPVQGFAGEIVQIMLGMLWRHF 1525 Query: 616 ---NATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 N + TVHD + + + V + ++M+ Sbjct: 1526 LRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADEVETIMSNV 1568 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 84/309 (27%), Gaps = 65/309 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITL--------------------CAYAWDDEP 41 L +D+ET + + +V + ++ + L A +DD Sbjct: 498 RYLVLDLETTTVRRYKRV-ANPFTKENYVVLSGARDHTGKVFMAGRYFSRNIALRYDDFE 556 Query: 42 VK-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDI--PSKRWICTS 97 V D + S+ S L L D V+ V HN F+ +++ + T Sbjct: 557 VTSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTM 615 Query: 98 VLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 G + L++ + + + Sbjct: 616 YAEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKL---------------DAVKEAWAKGKE 660 Query: 151 NHVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + + L EY D+E R L +R + + D L + G + Sbjct: 661 TYEIPYALLSEYLHGDLENTELIFRKHMERALLQRQVIICTARMDGLLCTTEMEYNGLKT 720 Query: 202 DLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLF-LITGIDL 253 ++ L + + + +L + + L + F ++ Sbjct: 721 NVQLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFFGGKLKLNT 780 Query: 254 VDMSEGTLK 262 TL Sbjct: 781 NARESKTLP 789 >gi|47934720|gb|AAT39798.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 80.9 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEKLMMDLTFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 130 Score = 80.5 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 + Y+ G L+ + L +L + + LI R ++ K L V Sbjct: 1 MMDYISHDLGYPLMQFDKAILGEVLKDDTLPDTDRRLIEIRQQLGKTSTAKYAALKALVM 60 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 +D R G L ++GAS TGRWSG FQPQNLPR + + + + + Sbjct: 61 NDHRAHGLLMYHGAS-TGRWSGRHFQPQNLPRPSFKNTDVCIELFQYQNAQLLEMIYNDS 119 Query: 361 SDCVRSCIIAS 371 + + SC+ A Sbjct: 120 MEALSSCLRAR 130 >gi|23009303|ref|ZP_00050402.1| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + P L L D Sbjct: 25 IAIDTETLGLNP----------HRDRLCVVQISRGDGSADVVQIRPGDPEPVRLKAILAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 V+ + H + F+ + + LG + CT V ++ LK+ L Sbjct: 75 PGVLKIFHFARFDLAVLFRALG--VMPAPVYCTKVASKLARTYTDRHGLKDVVREL 128 >gi|47934724|gb|AAT39800.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ +L + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEQLMMDLMFEMNSIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|240139043|ref|YP_002963518.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] gi|240009015|gb|ACS40241.1| 3'-5' exonuclease [Methylobacterium extorquens AM1] Length = 209 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + P L L D Sbjct: 25 IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 V+ + H + F+ + G + CT + ++ LK+ L Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL 128 >gi|170743378|ref|YP_001772033.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] gi|168197652|gb|ACA19599.1| 3'-5' exonuclease [Methylobacterium sp. 4-46] Length = 204 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 23/179 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + + + D L + P L + L D Sbjct: 20 IAVDTET--------LGLEPHRD--RLCVVQISRGDGEADLVQIAKGGPEPVVLKRVLTD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 V + H + F+ + LG + CT V +R LK+ L E Sbjct: 70 PAVTKIFHFARFDLAVLFHRLG--VMPGPIYCTKVASRLSRTYTDRHGLKDLVRELLGIE 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + ++ L K D RE L Sbjct: 128 IS--------KQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAE 178 >gi|302559315|ref|ZP_07311657.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302476933|gb|EFL40026.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 563 Score = 80.5 bits (197), Expect = 9e-13, Method: Composition-based stats. Identities = 68/496 (13%), Positives = 122/496 (24%), Gaps = 156/496 (31%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIVKLTDGIIR 233 E L+ +N G D+ + + + +L +++ +R Sbjct: 163 ESAGMLVAAEMNRTGLPWRADVHRAVLHDLLGERYAGGGEPRRLAELADEVSAAFGRRVR 222 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 ++ F G+ + L+S+ LI + Sbjct: 223 PDLPADVVKA--FAQAGVKVASTRRWELESV-----DHPAVAPLIE-YKKLYRIWVAHGW 274 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + DGR R G + TGRW +P+ Sbjct: 275 SWLQDWVRDGRFRPEF-LAGGTVTGRWVTNGGGALQIPK--------------------- 312 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R +A G +LVVAD +E RVLA I+ + ++ D+Y + Sbjct: 313 ---------VIRRAAVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRESDLYQSVS 363 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 D+ RA K+ L Y G L+ + Sbjct: 364 --------DRAFSGDRAQAKLAVLGAVY----------GQTSGDGLKNLAAL-------- 397 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 R + + D A + Sbjct: 398 -------------------------------------RRRFPRAVAYVDD----AARAGE 416 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 EG + P +P GD +++ S R R Sbjct: 417 EGRLVRTWLGRTCPPAARTGDDAAEEAGIP---VADEGTPDGDRAWVPGYASTDARAR-- 471 Query: 594 GGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIVLTVHDEIVS 634 G +VQ + + +V HDE++ Sbjct: 472 GRFARNFVVQGSAADWALLLLAALRRTLAGMAAE---------------LVFFQHDEVIV 516 Query: 635 ETPDTPYFS-VGTLCS 649 P+ + V + Sbjct: 517 HCPEEEAETVVAAIRE 532 >gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 558 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 76/510 (14%), Positives = 138/510 (27%), Gaps = 127/510 (24%) Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR----IDLDLV 206 + +R +AT R+ L E L+ +N G I +++ Sbjct: 133 MSPEDLAEVYAAQRRRTDATSHP-DRMRLLLTSESAGMLVAAEMNAAGLPWRADIHREVL 191 Query: 207 LKLQEL------IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 +L +L E++ +R ++ F GI + Sbjct: 192 RELLGERYPGGGEPTRLAELAEEVSAAFGHRVRPDLPADVVKA--FARAGIRVGSTRRWE 249 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 ++S+ A +L + + + DGR R +G + TGRW Sbjct: 250 IQSL------DHPAVRPLLEYKRLYRIWVAHGWSWLQNWVRDGRFRPEFHAHG-TVTGRW 302 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 +P+ +R ++A G LVVAD Sbjct: 303 VTNGGGALQIPK------------------------------VIRRAVVADPGHCLVVAD 332 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 A +E RVLA I+ + ++ A +D+Y + ++ RA K+ L Sbjct: 333 AAQLEPRVLAAISRDPGLMEVAARADDLYQSVS--------ERAFSGDRAQAKLAVLGAI 384 Query: 441 YQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y K +A+ + +A ++ E + + Sbjct: 385 YGQTKGDGLKNLAAL-----------------RRRFPRAVAYVDEAARAGEEGRLVRTWL 427 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G C A E + A R D Sbjct: 428 GRTCPP-----------------------AAGAGEDAAEEAGIPQEEAGDGSRSVPGDAR 464 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 +R V D + L A + ++ + Sbjct: 465 ARGRFARNFVVQGSAADWALLLLAALRRGCA-------------GLAAE----------- 500 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +V HDE++ P +V T+ Sbjct: 501 ----LVFFQHDEVIVHCPVEEADAVVTVLE 526 >gi|312436366|gb|ADQ83175.1| DNA polymerase [Yersinia phage Yep-phi] Length = 704 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 97/484 (20%), Gaps = 144/484 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277 + ++ + + L + + +L H + +L Sbjct: 326 YTPVEHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385 Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L + DGR+ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386 + R+ A + V D +G+E Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNLKDGKPDPWIQVGVDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R L + + GE + R K Y G Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQMAAGLPTRDNAKTFIYGFLYGAG-- 533 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + Sbjct: 534 ------------------------------------------AAKIGQIVGGTAEDGKRL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + + + ++E + + + + + + + R Sbjct: 552 IKNFLEQTPAI------------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + GY Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGY 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 ++ +HDE + + + W L EG Sbjct: 639 KHGWDGDFCLMGWIHDEQQLACRTEEI--AKVVIEVSQQAMHWVGDHFNFRCQLDTEGKM 696 Query: 670 AKRY 673 + Sbjct: 697 GPNW 700 >gi|254561638|ref|YP_003068733.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] gi|254268916|emb|CAX24877.1| 3'-5' exonuclease [Methylobacterium extorquens DM4] Length = 209 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + P L L D Sbjct: 25 IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPGDPAPERLKAVLAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 V+ + H + F+ + G + CT + ++ LK+ L Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL 128 >gi|188581677|ref|YP_001925122.1| 3'-5' exonuclease [Methylobacterium populi BJ001] gi|179345175|gb|ACB80587.1| 3'-5' exonuclease [Methylobacterium populi BJ001] Length = 209 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 23/172 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + P L L D Sbjct: 25 IAIDTETLGLNP----------HRDRLCVVQISRGDGSADVVQIRPGDPAPERLKAVLAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 ++ + H + F+ + K G + CT V ++ LK+ L Sbjct: 75 PQIVKIFHFARFDLAVLFKAFG--VMPMPVYCTKVASKLARTYTDRHGLKDVVREL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + + ++ L + D RE Sbjct: 129 ----VGVDLSKQQQSSDWGAEALSQAQIDYAASDVLHLHAARERLDAMLARE 176 >gi|308071862|emb|CBW54783.1| putative DNA polymerase A [Pantoea phage LIMElight] Length = 778 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 52/417 (12%), Positives = 102/417 (24%), Gaps = 96/417 (23%) Query: 288 AILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL+ + + V G + L A+ T R S QNLPR S Sbjct: 425 SVKKLSGMLQYVIPMDDDGSGIIHHRLNTC-ATITTRLSSGNPNLQNLPRDGTS------ 477 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIK 400 V+ + G +++ D + +E + G+ + Sbjct: 478 --------------------KVKQMFTSRFGSAGRIIEVDYSALEVVMGCVHTGDLKLLH 517 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 G D++ A N P + + + E Y+ + Sbjct: 518 LLQTGTDMHCYRLAFRHNMPYE----DVLKLAVEDEDGPDYKMWKQR------------- 560 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + S A L C+ ++ Sbjct: 561 ------------RTDIKPPSFAAQYGATAKGIAFATGLSLEFCQEFLDNEAKLFPDSIKF 608 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + + G + + + V + + PS +R + K Sbjct: 609 RDVIRKEVERTGNLPGQLKREQNDDGSFSVYKVG----YWTSPSGQRYSFRQKKQWRDGR 664 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEG--MK-------NATKNGYDIVLTVHDE 631 T + ++ Q + ++ M + ++ VHD Sbjct: 665 QTMDYK-------ATEMANYWCQGEAFFMMAVAFGMLIRHLIANDFYDGKVALMTNVHDA 717 Query: 632 IVSETPDTPYFSVGTL--CSLMTKNPS-----W-----AKGLPLKAEGYEAKR-YRK 675 + D L +M W K +P A + Y K Sbjct: 718 AYLDAADEVVGRQAALDTKRIMETARERILQFWPDYGILKDVPFPAAAEMGESMYSK 774 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 75/266 (28%), Gaps = 33/266 (12%) Query: 6 IDIET-RSPQPLPKVGVWAYAEQAVITLCAY---------AWDDEPVKLWDRTEQSAMPS 55 ID+ET K Y Q + A+ + D PV+ + + + Sbjct: 3 IDLETENYEYYGSKASP--YCPQNYVVESAWRYDRALSDGSTDVGPVQYVRYSSREEFIA 60 Query: 56 DLLQY--LRDETVMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN----G 104 Q+ + D+ + VAHN+ +E F R CT Sbjct: 61 AGSQWCPIPDDCWLIVAHNAAYEISWFLQFDRANFEAFLKRGGRVWCTMHGEYLVTDQQS 120 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +SL + + ++ R + ID N Y + Sbjct: 121 QYASLDETAPKYGGTHKVDGVKVLWEQGVRTSE--IDPMLLHDYLVNGDIPNTALVFYGQ 178 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER----KKL 220 R PL D L G +D+ K Q+ +L Sbjct: 179 YQKFTERG----QFPLIWERMDALLAFAYCEWFGLWVDMPTAKKNQKEQEARIAELKAEL 234 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLF 246 ++ + +L + + + + ++ Sbjct: 235 EQLLPELPETFEFNWGSNFMMSALIY 260 >gi|47934722|gb|AAT39799.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVPAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|322829428|gb|EFZ32819.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma cruzi] Length = 576 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 47/403 (11%), Positives = 95/403 (23%), Gaps = 84/403 (20%) Query: 270 ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + IL + V S + + TGR + Sbjct: 201 HGDKTAETILELRTMEKLIGTYYENTDDGTGMVSLVHSVDSCIHHELIHNKTNTGRLASA 260 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381 QN+P++++S +R ++ G+K + AD Sbjct: 261 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 294 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E LA +A + ++ + D + A D E K Sbjct: 295 SQLEVVALAVLADDFQMLEDLRSNVDFHCKRVAMMR---PDLQYTEVLLRAK-------- 343 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + S + L Sbjct: 344 ---------------------KNKEPEFVKLRQQAKIFSFQRQYGAGVKMISQSTGLTQD 382 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + R ++GV + SI + + Sbjct: 383 QVRNLIEKERETYRGVDAFNSMV---ALSANNFDASIQDGSRNVRGHQFFKGMFPVIT-- 437 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMK---- 615 R V+++ + + L VQ + +I + GM Sbjct: 438 ---GSRYVFTESDVPEGIMREKSLSAKSTNFSPTHLKNYPVQGFAGEIVQIMLGMLWRHF 494 Query: 616 ---NATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 N + TVHD + + + V + ++M+ Sbjct: 495 LRNNNYNGLAVLTNTVHDCVWIDCHADIFLQVADEVETIMSNV 537 >gi|47934662|gb|AAT39769.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVAHYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA +D N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILN 204 >gi|302535235|ref|ZP_07287577.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C] gi|302444130|gb|EFL15946.1| LOW QUALITY PROTEIN: DNA polymerase I [Streptomyces sp. C] Length = 559 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 82/311 (26%), Gaps = 76/311 (24%) Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + + + G A + +R ++A G +LVVAD +E RVLA Sbjct: 277 PGRPLPPRVHPRRHPHRPLGHPTAAGPCRSPKVIRRAVVADPGWRLVVADADQMEPRVLA 336 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 I+ + ++ ED+Y + F+ D K+ L Y Sbjct: 337 AISRDPAFMEVAGRPEDLYTAVSRQGFSGDRD--------KAKIAVLGAVY--------- 379 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G L+ + Sbjct: 380 -GQTSGDGLKNLAAL--------------------------------------------- 393 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + + D A +EG + P V + I Sbjct: 394 RRRFPRAVAYVDD----AARAGEEGRLVRTWLGRTCPPPVGAAEADEAGIPQEQGPERA- 448 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD--ILCEGMKNATKNGYD--IVL 626 + + + S R R G +VQ + D +L G +V Sbjct: 449 --DSAETGWTPSYASANTRAR--GRFTRNFVVQGSAADWALLMLAALRQATAGMRAELVF 504 Query: 627 TVHDEIVSETP 637 HDE++ P Sbjct: 505 FQHDEVIVHCP 515 >gi|326536127|ref|YP_004300559.1| gp5 [Enterobacteria phage 285P] gi|256861516|gb|ACV32472.1| gp5 [Enterobacteria phage 285P] Length = 704 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 82/768 (10%), Positives = 166/768 (21%), Gaps = 175/768 (22%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69 + G+ Q CA +D + + L E + V Sbjct: 3 LSDIETNGLLHNVSQFH---CAVTYDYTTDQYIRYRPDDF--GAYIDALEAEVARGGLIV 57 Query: 70 AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105 HN ++ + KK LG + P + + T V++R Sbjct: 58 FHNGHKYDIPVIELLAKKLLGRDVKFPKENVLDTLVMSRLIYSNIKDTDAGLLRSGKLPG 117 Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFG 160 +L+ L + K K S+ + + + Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD---------DFKASLAESGEEYVDGMEWLLFNEDMM 168 Query: 161 EYCKRDVEATRELFKRL-------------------------IPLSDGERDLWLLDQTIN 195 EY +DV T+ LF++L + E D L + Sbjct: 169 EYNVQDVVVTKALFEKLCSNTFYFPNETPAGSTEADRFWNGSLEAVKLEHDAAWLLAKME 228 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G+ ID+ + L +A R +L ++ + T A R TG L Sbjct: 229 RNGFPIDIKSLENLYAELAGRRGELLVELTNTFGSWYSAKGGTEAFR---HPRTGKPLTK 285 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG-- 313 K E D R Y Sbjct: 286 ----------------YPRVKYPKQGGIFKKPKNKKQREGLEPCELDTRDYVEGAPYTPV 329 Query: 314 ------------ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL-- 359 +R +G V + P + ++ + + Sbjct: 330 EHVVFNPASRDHITRVLTKAGWVP-VEFTPSGAPKVDDEVLEHVKVDDPDAQRCIELIKE 388 Query: 360 ---ASDCVRSCIIASNGKKLVVADLAGIEARV-------------LAWIAGEDWKIKAFA 403 + NG ++ D I V +A A+ Sbjct: 389 YLMIQKRIGQVAEGDNGWLRMIGDDGRIHGSVNPNGAVTGRATHSFPNVAQVPSIRAAYG 448 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + D + + LG+ Sbjct: 449 EPCRAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYRYDEGEYVETILTGDIHTK 508 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + D + + + + + K + + + Sbjct: 509 NQLAAGLPTRDNAKTFIYGFLYGAGAAKIGQIVGGTAEDGKRLIKNFLEQTPAI------ 562 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 ++E + + + + + + + R++ Sbjct: 563 ------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRSPHA-------- 608 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD--------IVLTVHDE 631 ++Q+ I + + G + VHDE Sbjct: 609 -------------ALNTLLQSAGALICKLWIVETERLLLEAGLKHGWDGDFAYMAWVHDE 655 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYEAKRYR 674 I + + L + L EG ++ Sbjct: 656 I--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKTGANWK 701 >gi|47934716|gb|AAT39796.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|170078658|ref|YP_001735296.1| putative ribonuclease D [Synechococcus sp. PCC 7002] gi|157811866|gb|ABV80286.1| ribonuclease D [Synechococcus sp. PCC 7002] gi|169886327|gb|ACB00041.1| putative ribonuclease D [Synechococcus sp. PCC 7002] Length = 207 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 59/204 (28%), Gaps = 34/204 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ Y + + L D V + +L + Sbjct: 25 IAIDTET--------MGLNPYRD--RLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEA 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120 + V H + F+ + GI+ + CT + + RT LK L Sbjct: 75 PEITKVFHFARFDLAQLRHVFGIETRP--FFCTKIASKLGRTYTSSHGLKALVKEL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +D N +Y DV + ++L + Sbjct: 129 ---------------MGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAM 173 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 E L+++ + I LD Sbjct: 174 LQRENRWPLMEECLRCLPTFISLD 197 >gi|47934618|gb|AAT39747.1| DNA polymerase [Uncultured T7-like podovirus] Length = 201 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 50/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + I + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKXIARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC G LV D +G+E R+LA ++ Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|47934718|gb|AAT39797.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G ++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGSKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934606|gb|AAT39741.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 2 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 61 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + + ++ Sbjct: 62 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVAHYMMLQKR-VAQI 117 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 118 DSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVP--------------------- 155 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA +D N Sbjct: 156 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILN 205 >gi|257068677|ref|YP_003154932.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Brachybacterium faecium DSM 4810] gi|256559495|gb|ACU85342.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Brachybacterium faecium DSM 4810] Length = 590 Score = 79.8 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 62/443 (13%), Positives = 101/443 (22%), Gaps = 141/443 (31%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + ++ + + L L GID+ S+ LK A Sbjct: 222 RRMVETGAEVREALGDPLVPLDSAPKLLRALH-RAGIDVASTSQWELKE------HQHPA 274 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L S T + +GR R G TGRW+ +PR Sbjct: 275 IAPLLQYKKMSRLLTANGWTWLDEWVHEGRYRPLYVPGGV-VTGRWASSGGGALQIPR-- 331 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + A G LV AD++ +E RVLA ++G Sbjct: 332 ----------------------------QLRPALRADPGWLLVSADVSQLEPRVLAAMSG 363 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + I A A + A +T + K+ L Y G Sbjct: 364 DRAMIAAGAGRDLYSGIVEAGVVSTRQE---------AKIGVLGALYGGTTGD------- 407 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 G + + Q + A +G + + W Sbjct: 408 SGRVVPRLRQ---------TFPDAMRLVDDAAATGERSGTVTTWLGRSSPAPDEEWIRA- 457 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 V G+ R A R R Sbjct: 458 ----------QRAAHQVDAPAGARERARRAARDRGRFTR--------------------- 486 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM--KNATKNG----------- 621 +VQ + + M G Sbjct: 487 ------------------------NFVVQGTAAEWALSWMAALRLRLAGFPAVPEPEAAA 522 Query: 622 ---------YDIVLTVHDEIVSE 635 + +HDE++ Sbjct: 523 PSGPVFSRRAHLAFFLHDEVIVH 545 >gi|47934708|gb|AAT39792.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L+ ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFKKKTEKGNVIVDEKVLNSIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G +LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934728|gb|AAT39802.1| DNA polymerase [Uncultured T7-like podovirus] Length = 202 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 30/169 (17%) Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGS 287 + + L +G + +L+ + AK L + Sbjct: 57 EPFNPGSRQQIAERLIEKGWKPTKRTEKGSVIVDEEVLASLDYP-EAKALAEYMMLQKR- 114 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 I ++++ EAV DGR+ G + GA TGR + +P Sbjct: 115 -IAQIDSWLEAVGKDGRVHGRVITNGA-VTGRMTHMSPNMAQVP---------------- 156 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + R G KLV D AG+E R+LA + Sbjct: 157 -------NSGSPYGHECRDLWTVEKGYKLVGIDAAGLELRMLAHYMNDQ 198 >gi|86171563|ref|XP_966236.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7] gi|46361202|emb|CAG25066.1| DNA polymerase 1, putative [Plasmodium falciparum 3D7] Length = 1444 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 40/404 (9%), Positives = 83/404 (20%), Gaps = 108/404 (26%) Query: 278 ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 I S + L + + + ++ GAS TGR S QN+ + R Sbjct: 1016 IKLYRESKKLVQNYIENLPKYIQKNTNKIHCNFNQIGAS-TGRLSCDQPNLQNIHSRFRC 1074 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 L + + I Sbjct: 1075 AISLKGKEENDTHDNNNNNNNIP-----------------------QIHISTNNVSTNNV 1111 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + + D E + L + + Sbjct: 1112 PMNIMSSTYPLYTMNKKNLIT---FDYKQMELFVMAY-----LSFDEQLLKLLNYSDVFI 1163 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + T+ + + + A + T + + + Sbjct: 1164 ETAKVLFNTNDVTNELRRMTKTVIYGILYGQTENGLAKSLLISDTLASNLIENFFQFFPN 1223 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V + + + I +R I+LP+ Sbjct: 1224 VYRFMQMQKFLVKHMNCVYTLIGRKR-----------------IILPN------------ 1254 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN-------------------- 616 R +Q + DI+ + + Sbjct: 1255 -------IKNKYRISM------NTPIQGCAADIMKFSLLSCFSVLNNNIYNNNKLLKMNN 1301 Query: 617 -----ATKNGYDI-----VLTVHDEIVSETPDTPYFSVGTLCSL 650 KN + +L VHDE++ E + + + + L Sbjct: 1302 INPLIIHKNQAFLNPTNLILQVHDELLLE---SEHDATKYIIQL 1342 >gi|288956945|ref|YP_003447286.1| ribonuclease D [Azospirillum sp. B510] gi|288909253|dbj|BAI70742.1| ribonuclease D [Azospirillum sp. B510] Length = 208 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 23/177 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + L + D V L +L + L D Sbjct: 25 VAIDTET--------MGLNPHRD--RLCLVQLSAGDGAVHLVQFRPGRYEAPNLKRLLTD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V + H + F+ + K LG+D CT V ++ LK+ C L E Sbjct: 75 PGVTKLFHFARFDVAVMKAYLGVDCRP--VYCTKVASKLVRTFTDRHGLKDLCKDLLGVE 132 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + D + L K DV RE L Sbjct: 133 IS--------KQQQSSDWGAPELTTDQMKYAASDVLHLHDLKAKLDVMLAREGRTHL 181 >gi|29831179|ref|NP_825813.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29608293|dbj|BAC72348.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 564 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 70/504 (13%), Positives = 125/504 (24%), Gaps = 155/504 (30%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ +N G D+ L + + +L +++ Sbjct: 155 RMRLLTATESAGMLVAAEMNAAGLPWRADVHRDLLNELLGERYAGGGEPRRLAELTDEVS 214 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R T ++ F GI + ++S+ A +L Sbjct: 215 AAFGRRVRPDLPTDVVKA--FAQAGIKVRSTRRWEIESV------DHPAVKPLLEYKKLY 266 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + + DGR R G + TGRW +P+ Sbjct: 267 RIWVAHGWSWLQDWVRDGRFRPEY-LPGGTVTGRWVTNGGGALQIPK------------- 312 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD +E RVLA I+ + ++ Sbjct: 313 -----------------VIRRAVVADPGWRLVVADADQMEPRVLAAISRDPGLMEVAGRE 355 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+Y + D+ RA K+ L Y G L+ + Sbjct: 356 SDLYQSVS--------DRAFSGDRAQAKLAVLGAIY----------GQTSGDGLKNLAAL 397 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 R + + D Sbjct: 398 ---------------------------------------------RRRFPKAVAYVDD-- 410 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 A +EG + P +P ++ S Sbjct: 411 --AARAGEEGRLVRTWLGRTSPPAAGASEDSAEEAGIPQDE--PAPSSGAAQEWMPGYAS 466 Query: 586 QLMRERTYGGKLTENIVQAI-------------------SRDILCEGMKNATKNGYDIVL 626 R R G +VQ + + +V Sbjct: 467 TNSRAR--GRFARNFVVQGSAADWALLLLAALRRACAGLAAE---------------LVF 509 Query: 627 TVHDEIVSETPDTPYFS-VGTLCS 649 HDE++ P + V + Sbjct: 510 FQHDEVIVHCPAEEADTVVAAIRE 533 >gi|37956877|gb|AAP34143.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 57/484 (11%), Positives = 104/484 (21%), Gaps = 144/484 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L I + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGS---AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L + V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSSEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 + VHDEI V + + + W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKM 696 Query: 670 AKRY 673 + Sbjct: 697 GPNW 700 >gi|47934744|gb|AAT39810.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L+ ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFKKKTEKGNIIVDEKVLNSIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G +LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246] Length = 209 Score = 79.4 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 76/242 (31%), Gaps = 42/242 (17%) Query: 199 YRIDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGI 251 +D + L E + +L + + L R+ ++ F G Sbjct: 1 MAVDTRAWVALAESAGADHARLADAMDAAAPNPRALPGRETRNWDSPSQVKA-AFAQLGF 59 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ L+ L+ A++ E DG + + Sbjct: 60 ---ALAATDDDDTLAGIAHP--LGALVREYRAAAKRLSTYGRVWVEKHVQDGAVLPSWNQ 114 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA GR S Q +PR R C A Sbjct: 115 LGAES-GRMSCSDPNLQQVPR----------------------------GSAHRRCFTAR 145 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 LV AD + E R+ A +A E + A+A+G D++ T A+ N D V+K+ R + Sbjct: 146 PEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTAARVLNKDEDAVTKDDRQL 205 Query: 432 GK 433 K Sbjct: 206 AK 207 >gi|297183461|gb|ADI19592.1| ribonuclease d [uncultured SAR11 cluster bacterium HF0770_37D02] Length = 214 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 32/205 (15%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID E G+ ++L ++ + + + ++ + L + Sbjct: 29 LAIDTE--------GSGLQIPHRD-KLSLVQFSTGNNDAYIIQPNRKDYKAPNIKKILEN 79 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSE 120 + + + H ++ + L K T + ++ LK+ L Sbjct: 80 DKITKIGHYLRYDISGLEYFL--KCNVKNIFDTKLASKLCRTYSQNHGLKDLALEF---- 133 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 GK L R D + YC DV ++ L + Sbjct: 134 ------CGKKLDKRL-------GSSDWNKNLDELTDAQLQ-YCSNDVIYLHKIKDELYKM 179 Query: 181 SDGERDLWLLDQTINDRGYRIDLDL 205 E L L + I RI LD Sbjct: 180 LVRENRLELYENCIKFLKTRIKLDQ 204 >gi|47934608|gb|AAT39742.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEKLMMDVMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVAHYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVVTNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA +D N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDDDYTNEILN 204 >gi|47934704|gb|AAT39790.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934706|gb|AAT39791.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934746|gb|AAT39811.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G +LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|296130861|ref|YP_003638111.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109] gi|296022676|gb|ADG75912.1| DNA-directed DNA polymerase [Cellulomonas flavigena DSM 20109] Length = 570 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 91/366 (24%), Gaps = 75/366 (20%) Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + + AT+ RL L E L+ + G D Sbjct: 140 APADGDGPDLLAELRDQLDAVTGATQP--GRLRLLLAAESGGALVAAEMQHDGLPWDPVR 197 Query: 206 VLKLQELIA----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 +L + + ++L I +L + L L G L Sbjct: 198 HDELLTDLLGPRPVGGGRPRRLEELVTTIRELLADPHLNPDSQPHLLAALR-RQGFSLSS 256 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 S+ ++ + +L S ++ DGR R G Sbjct: 257 TSKWEVREL------DHPVVAPLLEYKKLSRLLSANGWAWLDSWVRDGRFRPAYV-VGGV 309 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGRW+ LP +R+ A +G + Sbjct: 310 VTGRWATDGGGALQLP------------------------------ASLRAAARADDGWR 339 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LVVAD A +E RVLA ++G+ A + + D + R K Sbjct: 340 LVVADAAQLEPRVLAAMSGDRAMADAARG---------SDLYQRIADAGTVPTRTDAKYA 390 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 L Y S + + QA + Sbjct: 391 LLGAIYGATTG----------------SAGMLMPRLARAYPQAVALVEAAARAGERGETV 434 Query: 496 DKLIGT 501 +G Sbjct: 435 STWLGR 440 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 24/173 (13%) Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 +Y + ++ + + L E A + G ++S Sbjct: 384 RTDAKYALLGAIYGATTGSAGMLMPRLARAYPQAVA----LVEAAARAGERGETVSTWLG 439 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 P + + + R R G +VQ Sbjct: 440 RTSPPASAAFLD-------------RLGAAGAEGADPDDVRDARRRARDRGRFTRNFVVQ 486 Query: 604 AISRDILCEGMKNATKN-------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + + + + + +V +HDE+V +P +V T Sbjct: 487 GTAAEWALCWLASLRRRLREIGDGRARLVFFLHDEVVVHSPAQDADAVATAVR 539 >gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684] Length = 374 Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 54/189 (28%), Gaps = 27/189 (14%) Query: 4 LFIDIETRSP--QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L D+ET + L + +Y E + L + + D V L P L L Sbjct: 16 LAKDLETCAVFAVDLEADSMHSYQE--KVCLLQFTYHDTTVLLDPLAAGDLAP--LKPVL 71 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D ++ + H + ++ + I+I T + ++ L + Sbjct: 72 ADSSIRKIFHAADYDIRCLARDFDIEIRG--LFDTMIASQ-------------FLGEEKV 116 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 GK F + + Y D +L L P Sbjct: 117 GLADVLGK----YFDVTLDK--RFQRADWSKRPLSPEMCHYAAEDTRHLEKLVAILEPAL 170 Query: 182 DGERDLWLL 190 + LW + Sbjct: 171 KEKDRLWWV 179 >gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Saccharomonospora viridis DSM 43017] gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Saccharomonospora viridis DSM 43017] Length = 559 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 65/430 (15%), Positives = 113/430 (26%), Gaps = 118/430 (27%) Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + +L E I + + ++ L G+D+ +L H + +A Sbjct: 211 KLAELAERITAAFNDPTVNPDHPGSIVRALR-RDGVDVPSTR----AHVLRHVDHPAIAP 265 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + + DGR R G +GRW+ +P+ Sbjct: 266 --LLEYKELARLHSAHGWAWLDQWVRDGRFRPVYV-VGGVVSGRWASRGGAALQIPK--- 319 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R C+ A G LVVAD A +E RVLA ++G+ Sbjct: 320 ---------------------------LLRGCVRADPGWTLVVADAAQLEPRVLAALSGD 352 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + A+ + T+ TPI+ + RA K+ L+ Y G + Sbjct: 353 RRLAEVSADADLYTSLTHTLFGRTPIE----DDRARAKIAMLSAMYGGTSG--------- 399 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + A S + + +G +AWR Sbjct: 400 -------EAAPLLSLLRRRFPHAVSFVEHAAREGERGGLVRSRLGRTSLPPPEAWRTLTG 452 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 G ++ G V++ D VL ++ R Sbjct: 453 G-----SGDENSARRAARDWG-------RFTRNFVVQASAADWTAVLLATLRRRLPAP-- 498 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +V HDE++ Sbjct: 499 ----------------------------------------------AHLVFFQHDEVLVH 512 Query: 636 TPDTPYFSVG 645 P V Sbjct: 513 CPTELAGQVQ 522 >gi|47934714|gb|AAT39795.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVPYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + A ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934788|gb|AAT39832.1| DNA polymerase [Uncultured T7-like podovirus] Length = 202 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 70/225 (31%), Gaps = 50/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVXDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC G LV D +G+E R+LA ++ Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDED 197 >gi|47934756|gb|AAT39816.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEETGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|228969098|ref|ZP_04130012.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228790587|gb|EEM38274.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 388 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 95/391 (24%), Gaps = 85/391 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------S 51 FID ++ P I + D Sbjct: 12 FIDTKSTGSNPFKDS----------IISITIGFMDNSFFYIPIKPFKHRLSQNISTLSLE 61 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 L L + + + NS DI + T + A + Sbjct: 62 YTMKKLSPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHPKGV 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K K I F Y +++ Sbjct: 121 KEWYKEYVLPR-----LISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKS 175 Query: 170 TRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQE 216 E KR+ + E L + T +G +I+ + + +++++ + Sbjct: 176 VFEYQKRIFENPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKINEEFLSNDVKQILQAK 235 Query: 217 RKKLDEDIVKLT-------------------------DGIIRSSRQTYALRMYLF----- 246 + + ++I+ + + L L+ Sbjct: 236 LQSVKKEILNHLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAI 295 Query: 247 -------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ + K+++ + ++ + ++ R + N+L + Sbjct: 296 LKPIMEYDKGCKSLISKLKTDRKTLIRNLSMHPVIPLILEYRRLVKLISS-FCNSLPKEQ 354 Query: 300 --SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + D ++ G ++TGR S + Sbjct: 355 QGTIDNKIHPIYNSVG-TKTGRMSCSSPNLK 384 >gi|47934748|gb|AAT39812.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934754|gb|AAT39815.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934758|gb|AAT39817.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934760|gb|AAT39818.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934800|gb|AAT39838.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934642|gb|AAT39759.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 47/224 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D++ L+ +A +++++ + I + Sbjct: 1 EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSEKTGKQLKDKVTIFNLA 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + +G + L +I Q LI L + ++ Sbjct: 61 SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AQLIAEYLMLQKR-VGMID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + V + TGR + +P Sbjct: 118 AWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + +RS +G L DL+GIE R LA +D Sbjct: 156 -SVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDE 198 >gi|47934622|gb|AAT39749.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 47/224 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D++ L+ +A +++++ + I + Sbjct: 1 EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + +G + L +I Q LI L + ++ Sbjct: 61 SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AQLIAEYLMLQKR-VGMID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + V + TGR + +P Sbjct: 118 AWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + +RS +G L DL+GIE R LA +D Sbjct: 156 -SVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDE 198 >gi|47934616|gb|AAT39746.1| DNA polymerase [Uncultured T7-like podovirus] Length = 211 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 47/224 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D++ L+ +A +++++ + I + Sbjct: 2 EQNGFKLDVEACALLRATMADRMGSIEDEVQAVFPPIVEERWSDKTGKQLKDKVTIFNLA 61 Query: 237 QTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + +G + L +I Q LI L + ++ Sbjct: 62 SRKQIAERLQGLGWTPTKHTEKGQPIVDEGTLEDIDIPQ--AQLIAEYLMLQKR-VGMID 118 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + V + TGR + +P Sbjct: 119 AWLKRVDEKTHRVHGGVITQGTITGRMAHRNPNLGQVP---------------------- 156 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + +RS +G L DL+GIE R LA +D Sbjct: 157 -SVTKPYGEQIRSLWTVDDGNVLCGTDLSGIELRCLAHYMQDDE 199 >gi|220925751|ref|YP_002501053.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] gi|219950358|gb|ACL60750.1| 3'-5' exonuclease [Methylobacterium nodulans ORS 2060] Length = 204 Score = 78.6 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 23/172 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + + + D + + P L + L D Sbjct: 20 IAVDTET--------LGLEPHRD--RLCVVQISHGDGEADVVQIPKIGPEPVVLKRVLTD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V + H + F+ + LG + CT V +R LK+ L E Sbjct: 70 PAVTKIFHYARFDLAVLYHRLG--VMPGPVYCTKVASRLARTYTDRHGLKDLVRELLGVE 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + D+ L K D RE Sbjct: 128 LS--------KQQQSSDWGADTLTPAQIDYAASDVLHLHALRAKLDAMLARE 171 >gi|47934644|gb|AAT39760.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 63/223 (28%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ D ++ E ++ + ++ + + Sbjct: 1 ERNGFAFDFPRACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVDEGNKLVGIDASGLELRMLAHYMDDPE 193 >gi|158334839|ref|YP_001516011.1| ribonuclease D [Acaryochloris marina MBIC11017] gi|158305080|gb|ABW26697.1| ribonuclease D [Acaryochloris marina MBIC11017] Length = 209 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 34/202 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 ++ +D ET +G+ + + + L + V + + +L Q + Sbjct: 26 RIAVDTET--------MGLKPHRD--RLCLVQICNPEGQVTVVRIAQGQMDAPNLKQLME 75 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFS 119 +TV+ V H + F+ L I+ CT + ++ LK L Sbjct: 76 SDTVLKVFHFARFDIATLLHHLDIETMP--IFCTKIASKLVRTYSPRHGLKELVREL--- 130 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 G+ L D N + Y DV L+ Sbjct: 131 -------VGEEL---------DKSAQSSDWGNAENLSEEQLNYASNDVRYLLSAQATLVK 174 Query: 180 LSDGERDLWLLDQTINDRGYRI 201 + + E L L + Sbjct: 175 MLEREERLELAMACFQCLPTIV 196 >gi|22298627|ref|NP_681874.1| putative ribonuclease D [Thermosynechococcus elongatus BP-1] gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1] Length = 211 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 61/205 (29%), Gaps = 34/205 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 +L +D ET +G+ + + L + V + L Q L Sbjct: 27 QLAVDTET--------MGLNIPRD--RLCLVQVCDPEGQVAVVKIGRGQKEAPHLQQLLE 76 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119 + + H + F+ + LGI + CT + + RT LK+ L+ Sbjct: 77 HPRITKIFHYARFDLATLRYHLGIRVHP--VFCTKIASKIARTYSPRHGLKDL--VLDL- 131 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 ID N + Y DV L ++L Sbjct: 132 ----------------LGVEIDKSAQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTA 175 Query: 180 LSDGERDLWLLDQTINDRGYRIDLD 204 + E L+ ++ +DLD Sbjct: 176 MLKREERFELVQTALSCLPAIVDLD 200 >gi|218530671|ref|YP_002421487.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] gi|218522974|gb|ACK83559.1| 3'-5' exonuclease [Methylobacterium chloromethanicum CM4] Length = 209 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 23/172 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + P L L D Sbjct: 25 IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPSDPAPERLKAVLAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H + F+ + G + CT + ++ LK+ L Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + + + L + D RE Sbjct: 129 ----VGVDLSKQQQSSDWGAATLSQAQIDYAASDVLHLHAARERLDAMLARE 176 >gi|47934786|gb|AAT39831.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934656|gb|AAT39766.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 78.2 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ D + ++ E ++ + ++ + + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC ++G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193 >gi|47934648|gb|AAT39762.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934652|gb|AAT39764.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934664|gb|AAT39770.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ D + ++ E ++ + ++ + + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC ++G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193 >gi|37956824|gb|AAP34091.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 57/484 (11%), Positives = 103/484 (21%), Gaps = 144/484 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L I + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQETGWIPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 + VHDEI V + + + W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQV--VIEIAQEAMRWVGDHWNFRCLLDTEGKM 696 Query: 670 AKRY 673 + Sbjct: 697 GPNW 700 >gi|119637765|ref|YP_919001.1| DNA polymerase [Yersinia phage Berlin] gi|119391796|emb|CAJ70669.1| hypothetical protein [Yersinia phage Berlin] Length = 704 Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 44/484 (9%), Positives = 97/484 (20%), Gaps = 144/484 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277 + ++ + + L + + +L H + +L Sbjct: 326 YTPVEHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385 Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L + DGR+ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386 + R+ A + V D +G+E Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R L + + GE + R K Y G Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQMAAGLPTRDNAKTFIYGFLYGAG-- 533 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + Sbjct: 534 ------------------------------------------AAKIGQIVGGTSEDGKRL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + + + ++E + + + + + + + R Sbjct: 552 IKNFLEQTPAI------------AALREAITGALVKDSKWVGGEQKVTWKRRWVRGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + GY Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVKTEEMLLEMGY 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 ++ +HDE + + + W L EG Sbjct: 639 KHGWDGDFCLMGWIHDEQQLACRTEEI--AKVVIEVSQQAMRWVGDHFNFRCQLDTEGKM 696 Query: 670 AKRY 673 + Sbjct: 697 GPNW 700 >gi|47934650|gb|AAT39763.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ D + ++ E ++ + ++ + + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYL--FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKDAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC ++G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193 >gi|170751505|ref|YP_001757765.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] gi|170658027|gb|ACB27082.1| 3'-5' exonuclease [Methylobacterium radiotolerans JCM 2831] Length = 207 Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 48/173 (27%), Gaps = 25/173 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + + P L + L D Sbjct: 23 VAIDTETLGLNP----------HRDRLCVVQLSTGDGTADVVQIPQAGPEPVVLKRVLAD 72 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL-NFS 119 ++ + H + F+ + + LG + CT + ++ LK+ L Sbjct: 73 PGILKIFHFARFDVAVLYRALG--VMPSPVYCTKIASKLARTYTDRHGLKDVVRELVGVD 130 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + ++ L + D RE Sbjct: 131 L---------SKQQQSSDWGAETLSQAQLDYAASDVLHLHAARERLDAMLARE 174 >gi|47934646|gb|AAT39761.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 77.8 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G D + ++ E ++ + ++ + + Sbjct: 1 ERNGSAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC ++G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193 >gi|239787681|emb|CAX84189.1| 3\'-5\' exonuclease family protein [uncultured bacterium] Length = 202 Score = 77.8 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 62/213 (29%), Gaps = 36/213 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P+ + L + D L + P L L D Sbjct: 20 IAIDTETMGLNPMRD----------RLCLVQLSSGDGDAHLVHFQGRYEAP-RLKALLAD 68 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 + + H + F+ + + LG+ CT + +R N LK+ C Sbjct: 69 HNRLKLFHYARFDIAMLARWLGVTC--TPVYCTKIASRLTRTNTDKHGLKDLCR------ 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L + S + Y DV L +L L Sbjct: 121 ----DLLGIDLSKQQQTSDWGSGDLTAEQQA----------YAASDVLHLHALKAKLDAL 166 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 E L D + R LDL+ +E I Sbjct: 167 LKREGRGALADSCYSFLPTRAALDLLGWGEEDI 199 >gi|47934736|gb|AAT39806.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGSSLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934654|gb|AAT39765.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ D + ++ E ++ + ++ + + Sbjct: 1 ERNGFAFDFPMACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC ++G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYIDDPE 193 >gi|163851920|ref|YP_001639963.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] gi|163663525|gb|ABY30892.1| 3'-5' exonuclease [Methylobacterium extorquens PA1] Length = 209 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + P L+ L D Sbjct: 25 IAIDTETLGLNP----------HRDRLCVVQVSRGDGSADVVQIRPGDPAPERLMAVLAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 V+ + H + F+ + G + CT + ++ LK+ L Sbjct: 75 AGVVKIFHFARFDLAVLFNAFG--VMPAPVYCTKIASKLARTYTDRHGLKDVVREL 128 >gi|47934762|gb|AAT39819.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERTSEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 RSC G LV D +G+E R+LA + Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDD 195 >gi|47934710|gb|AAT39793.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 72/231 (31%), Gaps = 50/231 (21%) Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSRQ 237 G+++D + KL + E ++ ++ + I + Sbjct: 2 RNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPGS 61 Query: 238 TYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L G+ +E + +L ++ + + + + +++ Sbjct: 62 RKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + +AV DGR+ G + GA TGR + +P Sbjct: 118 SWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP---------------------- 154 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G +LV D +G+E R+LA ++ N Sbjct: 155 -AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|47934670|gb|AAT39773.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 50/223 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ D + ++ E ++ + ++ + + Sbjct: 1 ERNGFAFDFPVACEIHEQHKNRMTDIELQLQEVFPPIIEERYSDKTGKRLKDRVTVFNPG 60 Query: 237 QTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + L D+ + + N L+L L S I + + Sbjct: 61 SRQQVADRLTAKGAVWKDITPTGKPKVDEKSLEQNANIPEAALVLEYLTLSKR-IGMVRS 119 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 +AV DGR+ G + GA TGR + +P + Sbjct: 120 WLDAVGDDGRIHGRVNTCGA-ITGRMTHSSPNMAQIPSESLY------------------ 160 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RSC ++G KLV D +G+E R+LA + Sbjct: 161 ----------RSCFTVADGNKLVGIDASGLELRMLAHYMDDPE 193 >gi|328545553|ref|YP_004305662.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1] gi|326415294|gb|ADZ72357.1| 3'-5' exonuclease, putative [Polymorphum gilvum SL003B-26A1] Length = 206 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 37/211 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P + + + + D + +L + L D Sbjct: 22 VAVDTETLGLNP----------HRDRLCVVQLSPGDGTADVVQIARGQRAAPNLARLLTD 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 M + H + F+ + + LGI++ CT + ++ LK+ L Sbjct: 72 PAKMKIFHFARFDLAVLRHNLGIEVAP--VWCTKIASKLVRTYTDRHGLKDITREL---- 125 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L K S T + A Y DV L ++L + Sbjct: 126 ----------LGVDLSKQQQSSDWAAETLTDAQLA------YAASDVLHLHALREKLAAM 169 Query: 181 SDGERDLWLLDQTINDRGYR--IDLDLVLKL 209 + E L R +DL + Sbjct: 170 LEREERTALARACYEFLPTRAALDLMGWEEQ 200 >gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120] gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120] Length = 209 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 57/207 (27%), Gaps = 34/207 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L + V + +L + L Sbjct: 27 IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIAQGQTAAPNLKKLLEA 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ V H + F+ L I + CT + ++ LK+ L Sbjct: 77 TNVLKVFHFARFDVATLLHHLDIHVQP--IFCTKIASKLARTYTNRHGLKDLVHEL---- 130 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + +D N + Y DV ++L+ + Sbjct: 131 ---------------EQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207 E L Q + LDL+ Sbjct: 176 LKREERWELAQQCFQVLPTIVSLDLLQ 202 >gi|86747785|ref|YP_484281.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] gi|86570813|gb|ABD05370.1| 3'-5' exonuclease [Rhodopseudomonas palustris HaA2] Length = 204 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 35/200 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + + +L + L D Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 ++ + H + F+ LG + + CT + +R LK+ L Sbjct: 70 PNILKIFHFARFDLAALSNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L K S T ++ A Y DV L +L + Sbjct: 124 ----------LNVDLSKQQQSSDWGADTLSDAQLA------YAASDVLHLHALRDKLDAM 167 Query: 181 SDGERDLWLLDQTINDRGYR 200 E L +R Sbjct: 168 LARENRTELAQACFGFLPHR 187 >gi|75674370|ref|YP_316791.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] gi|74419240|gb|ABA03439.1| 3'-5' exonuclease [Nitrobacter winogradskyi Nb-255] Length = 206 Score = 77.4 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 35/199 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 ID ET +G+ + + + + + D + +L++ L+D Sbjct: 23 AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQRDAPNLIKLLKDP 72 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH 121 ++ + H + F+ G + + CT + +R LK+ L Sbjct: 73 AIVKIFHFARFDLAALYNAFG--VMPRPVYCTKIASRLIRTYTDRHGLKDLVREL----- 125 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 L K S T ++ A Y DV L +L Sbjct: 126 ---------LSIDLSKQQQSSDWGSPTLSDAQLA------YAASDVLHLHALRDKLEATL 170 Query: 182 DGERDLWLLDQTINDRGYR 200 E L R Sbjct: 171 AREDRSALAQACFEFLPSR 189 >gi|47934742|gb|AAT39809.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 77.4 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVRDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G +LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDGGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413] Length = 209 Score = 77.1 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 54/207 (26%), Gaps = 34/207 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L + V +L + L Sbjct: 27 IAVDTETMGLLP----------QRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEA 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ V H + F+ + L I + CT + ++ LK+ L Sbjct: 77 TNVLKVFHFARFDVATLRHHLDIHVQP--IFCTKIASKLARTYTNRHGLKDLVYEL---- 130 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + + Y DV ++L+ + Sbjct: 131 ---------EQVELDKSAQSSDWGNAANLTDAQL------SYAANDVRYLLSAQQKLVAM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207 E L Q + LDL+ Sbjct: 176 LKREERWELAQQCFQVLPTIVSLDLLQ 202 >gi|32442309|gb|AAP82225.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 112/449 (24%), Gaps = 114/449 (25%) Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 SL+ L RF + D + +YC + Sbjct: 32 RHSLEAWGYRL----------------KRFKGDFAKNDSNDWSTYT-----PEMLDYCIQ 70 Query: 166 DVEATRELFKRLI-------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 D + T L++ L E D+ +L G+R D+D ++++ + E Sbjct: 71 DTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDAAVRVRATLQDEFD 130 Query: 219 KLDEDIVK--------------------------LTDGIIRSSRQTYALRMYLFLITGID 252 + + I +T + + L G Sbjct: 131 SITKSIAAIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQNIAWALQTFRGAR 190 Query: 253 L--------VDMSEGTLKSIL--------SHSNITQLAKDLILNRLASSGSAILKLNTLS 296 + E TL + + +L G N+ Sbjct: 191 FTKVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKWLGQLSEGTNSWF 250 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 ++ DG + + +++TGR + + Sbjct: 251 NSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV-------------------------- 282 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +++ R + G +V ADL G+E R+L + AF G V Sbjct: 283 --VSAPWARELFVPHPGHVMVGADLEGLELRLLGHY------LAAFDQGSFAEVVVNGDI 334 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW- 475 D+V R K + A Y G +L + + Sbjct: 335 HQQNADRV-GCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSDAQKKTLGGELRRKFL 390 Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGT 501 E ++ + L G Sbjct: 391 DAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419 >gi|47934684|gb|AAT39780.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 45/230 (19%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ ++ + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294 + L G +E + I LI L + +++ Sbjct: 61 SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + V + TGR + +P Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHHMQDPEWQEELLN 205 >gi|47934712|gb|AAT39794.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 77.1 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ KL + E ++ ++ + + + Sbjct: 1 ERNGFKLDVSYAEKLMMDLMFEMNNIESELQSIFPPIVEERWSEKTGKQLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L I + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFDKKTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNVLVGIDASGLELRMLARYMDDEDYTNEILN 204 >gi|71754987|ref|XP_828408.1| mitochondrial DNA polymerase I protein D [Trypanosoma brucei TREU927] gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like protein D [Trypanosoma brucei] gi|70833794|gb|EAN79296.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma brucei] Length = 1629 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 44/392 (11%), Positives = 94/392 (23%), Gaps = 83/392 (21%) Query: 270 ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + IL A + V D + + TGR + Sbjct: 1254 HGDKTAETILELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASA 1313 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381 QN+P++++S +R ++ G+K + AD Sbjct: 1314 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 1347 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E LA +A + ++ + D + A D E K Sbjct: 1348 SQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMR---PDLQYTEILKKAK-------- 1396 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + S + L Sbjct: 1397 ---------------------KDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQD 1435 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + R ++GV + + + + R ++ Sbjct: 1436 QVRHLIEKERETYRGVDVFNSMV--ALSANKFDASLQNGSRNVRGHQIFKGMFPVI---- 1489 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------- 614 + R ++++ L + + L VQ + +I+ + Sbjct: 1490 --TGSRYIFTESDVPEGLLRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHF 1547 Query: 615 KNATKNG--YDIVLTVHDEIVSETPDTPYFSV 644 G ++ TVHD + + V Sbjct: 1548 LRKDNYGGLAVLINTVHDCVWIDCHMDVLQDV 1579 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 83/328 (25%), Gaps = 72/328 (21%) Query: 2 SKLFIDIETRSP-------QPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y Q + A +DD V Sbjct: 521 RYLVVDLETTTVRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLHV 580 Query: 43 K-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICT 96 + S+ S L L D V+ V HN F+ +++ + T Sbjct: 581 TSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWDT 637 Query: 97 SVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 G + L+ + S + Sbjct: 638 MYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPK-----------LDAVKQAWSSG----K 682 Query: 150 ANHVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 ++ +Y D+E R L +R + + D L + G + Sbjct: 683 DTCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLK 742 Query: 201 IDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGIDL 253 ++ L L + + K+L + + + + L + F Sbjct: 743 TNVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF------G 796 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNR 281 + T + + R Sbjct: 797 GKLKLSTNARESRLLPGEVFERHTLYAR 824 >gi|261334251|emb|CBH17245.1| mitochondrial DNA polymerase I protein D,putative [Trypanosoma brucei gambiense DAL972] Length = 1629 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 44/392 (11%), Positives = 94/392 (23%), Gaps = 83/392 (21%) Query: 270 ITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + IL A + V D + + TGR + Sbjct: 1254 HGDKTAETILELRAMEKLIGTYYENTDDGTGMVSLVHDDDSCIHHELIHNKTNTGRLASA 1313 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADL 381 QN+P++++S +R ++ G+K + AD Sbjct: 1314 NPNCQNIPKEDKSP--------------------------LREMFVSRYGEKGMCIEADY 1347 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E LA +A + ++ + D + A D E K Sbjct: 1348 SQLEVVALAVLANDQQMLEDLRSNVDFHCKRVAMMR---PDLQYTEILKKAK-------- 1396 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + S + L Sbjct: 1397 ---------------------KDKEPEFVKLRQQAKIFSFQRQYGAGVKMISESTGLTQD 1435 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + R ++GV + + + + R ++ Sbjct: 1436 QVRHLIEKERETYRGVDVFNSMV--ALSANKFDASLQNGSRNVRGHQIFKGMFPVI---- 1489 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------- 614 + R ++++ L + + L VQ + +I+ + Sbjct: 1490 --TGSRYIFTESDVPEGLLRNKSLAVKSTNFSPTHLKNYPVQGFAGEIVQIMLGVLWRHF 1547 Query: 615 KNATKNG--YDIVLTVHDEIVSETPDTPYFSV 644 G ++ TVHD + + V Sbjct: 1548 LRKDNYGGLAVLINTVHDCVWIDCHMDVLQDV 1579 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 83/328 (25%), Gaps = 72/328 (21%) Query: 2 SKLFIDIETRSP-------QPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y Q + A +DD V Sbjct: 521 RYLVVDLETTTVRRYKRVANPFTKENYVVLSGARDYRGQVFMPSRYYSRNVALRYDDLHV 580 Query: 43 K-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICT 96 + S+ S L L D V+ V HN F+ +++ + T Sbjct: 581 TSTHSLVKGSSKHSLFLPPLDDYDVL-VGHNIKFDL--LHMWRDVELRRFLKRGGKIWDT 637 Query: 97 SVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 G + L+ + S + Sbjct: 638 MYAEYLLTGHEVKLGHGAGLEEVAKSYGGQTPK-----------LDAVKQAWSSG----K 682 Query: 150 ANHVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 ++ +Y D+E R L +R + + D L + G + Sbjct: 683 DTCEIPYRTLTQYLHGDLENTELIFKKHIERALAQRQVVIILARMDGLLCTTEMEYNGLK 742 Query: 201 IDLDLVLKLQELIAQERKKLDEDI-------VKLTDGIIRSSRQTYALRMYLFLITGIDL 253 ++ L L + + K+L + + + + L + F Sbjct: 743 TNVQLALSQSNELMCKVKELRRHLDNSIPKEISIDCRKYFNWASNQHLIAFFF------G 796 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNR 281 + T + + R Sbjct: 797 GKLKLSTNARESRLLPGEVFERHTLYAR 824 >gi|47934750|gb|AAT39813.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDSIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + A TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNSA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G +LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNRLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|194100488|ref|YP_002003333.1| gp5 [Yersinia phage Yepe2] gi|193201221|gb|ACF15702.1| gp5 [Yersinia phage Yepe2] Length = 706 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 92/749 (12%), Positives = 174/749 (23%), Gaps = 137/749 (18%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69 L G+ Q CA +D + + L DE + V Sbjct: 3 LSDLEANGLLHSVSQFH---CAVTYDYTTDQYIRYRPADF--GAYIDALEDEVARGGLIV 57 Query: 70 AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105 HN ++ + KK LG ++ P + + T VL+R Sbjct: 58 FHNGHKYDIPVIELLAKKLLGRDVEFPKENVLDTLVLSRLVYSNIKDTDAGLLRAGKLPG 117 Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW----Q 157 +L+ L + K S W + Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD------------DFKASLVESGEDYVDGLEWLMFNE 165 Query: 158 LFGEYCKRDVEATRELFKRL------IPLSDG-------------------ERDLWLLDQ 192 EY +DV T+ LF++L P + E D L Sbjct: 166 DMMEYNVQDVVVTKALFEKLCSNTFYFPEVEPNGSTEAERFWKGSIEAVKLEHDAAWLLA 225 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G+ ID+ + L +A R +L ++ + A R TG Sbjct: 226 KMERNGFPIDVKSLENLYAELAGRRGELLVELTNTFGSWYQVKGGVEAFR---HPRTGKP 282 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 L K E D R Y Sbjct: 283 LTK----------------YPRVKYPKQGGIFKKPKNKKQREGLEPCELDNRDYVEGAPY 326 Query: 313 GASRTGRW--SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + S + L + T + E + D R Sbjct: 327 TPVEHVVFNPSSRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQR----- 381 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 ++ + I+ RV G++ ++ I+ + + + Sbjct: 382 ---CIELIKEYLMIQKRVGQVAEGDNGWLRMIGEDGRIHGSVNP--NGAVTGRATHSFPN 436 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD--- 487 + +V + Y + + V ++ + + Sbjct: 437 VAQVPSIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLELRCLGHFMYRYDEGEY 496 Query: 488 -QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN- 545 + A L + G+ + G S +R+ Sbjct: 497 VETILTGDIHTKNQMAAGLPTRDNAKTFNGIYGFLYGAGAAKIGQIVGGTSEDGKRLIKN 556 Query: 546 ----VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 P + R +V S V ++ + + R+ + Sbjct: 557 FLEQTPAIAALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGRKVHVRS-PHAALNTL 615 Query: 602 VQAISRDILCEGMKN----ATKNGYD--------IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q+ I + + GY ++ +HDE + Sbjct: 616 LQSAGALICKLWIVKTEEMLLEMGYKHGWDGDFCLMGWIHDEQQLACRTEEI--AKVVIE 673 Query: 650 LMTKNPSWAKG-----LPLKAEGYEAKRY 673 + + W L EG + Sbjct: 674 VSQQAMRWVGDHFNFRCQLDTEGKMGPNW 702 >gi|47934672|gb|AAT39774.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934674|gb|AAT39775.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934676|gb|AAT39776.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934678|gb|AAT39777.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934680|gb|AAT39778.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934686|gb|AAT39781.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934694|gb|AAT39785.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 45/230 (19%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ ++ + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294 + L G +E + I LI L + +++ Sbjct: 61 SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + V + TGR + +P Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205 >gi|194100278|ref|YP_002003476.1| gp5 [Enterobacteria phage BA14] gi|193201273|gb|ACF15753.1| gp5 [Enterobacteria phage BA14] Length = 704 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 45/485 (9%), Positives = 97/485 (20%), Gaps = 144/485 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277 + ++ + + L + + +L H + +L Sbjct: 326 YTPVEHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385 Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L + DGR+ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386 + R+ A + V D +G+E Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R L + + GE + R K Y G Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQMAAGLPTRDNAKTFIYGFLYGAG-- 533 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + Sbjct: 534 ------------------------------------------AAKIGQIVGGTAEDGKRL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + + + ++E + + + + + + + R Sbjct: 552 IKNFLEQTPAI------------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVETERLLLEAGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 + VHDEI + + L + L EG Sbjct: 639 KHGWDGDFAYMAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696 Query: 670 AKRYR 674 ++ Sbjct: 697 GANWK 701 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 82/300 (27%), Gaps = 74/300 (24%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69 + G+ Q CA +D + + L E + V Sbjct: 3 LSDIETNGLLHNVSQFH---CAVTYDYTTDQYIRYRPDDF--GAYIDALEAEVARGGLIV 57 Query: 70 AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105 HN ++ + KK LG + P + + T V++R Sbjct: 58 FHNGHKYDIPVIELLAKKLLGRDVKFPKENVLDTLVMSRLIYSNIKDTDAGLLRAGKLPG 117 Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFG 160 +L+ L + K K S+ + + + Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD---------DFKASLAESGEEYVDGMEWLLFNEDMM 168 Query: 161 EYCKRDVEATRELFKRL-------------------------IPLSDGERDLWLLDQTIN 195 EY +DV T+ LF++L + E D L + Sbjct: 169 EYNVQDVVVTKALFEKLCSNTFYFPNETPAGSTEAERFWNGSLEAVKLEHDAAWLLAKME 228 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G+ ID+ + L +A R +L ++ ++ A R TG L Sbjct: 229 RNGFPIDIKSLENLYAELAGRRGELLVELTNTFGTWYQAKGGVEAFR---HPRTGKPLTK 285 >gi|239947292|ref|ZP_04699045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] gi|239921568|gb|EER21592.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis] Length = 203 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L ++ + T Q + +L L D Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHFVHFTNQDYIAPNLKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T + H + F+ KK L ID+ + CT + ++ L + C L Sbjct: 70 KTRCKIFHFARFDLAFIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLNDLCRELLNIN 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + D+ + EY +DV +L L + Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E L R +LDL+ Sbjct: 168 LLKENRYELAQDIFRFLPTRANLDLL 193 >gi|229073437|ref|ZP_04206573.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus cereus F65185] gi|228709744|gb|EEL61782.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus cereus F65185] Length = 464 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 94/391 (24%), Gaps = 85/391 (21%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------S 51 FID ++ P I + D Sbjct: 88 FIDTKSTGSNPFKDS----------IISITIGFMDNSFFYIPIKPFKHRLSQNTSTLSLE 137 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SL 109 L L + + + NS DI + T + A + Sbjct: 138 YTMKKLSPLLE-KDTLLILSNSKQHIHALYNWCNFDITYNIFWDTEIAANLLNENHPKGV 196 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K K I F Y +++ Sbjct: 197 KEWYKEYVLPR-----LISKGTILNTMDSKKYMFEKTLYDQLQHHVATYFACYDIFMLKS 251 Query: 170 TRELFKRLIPLS------------DGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQE 216 E KR+ + E L + T +G +I + + +++++ + Sbjct: 252 VFEYQKRIFENPKFNLVHIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQAK 311 Query: 217 RKKLDEDIVKLT-------------------------DGIIRSSRQTYALRMYLF----- 246 + + ++I+ + + L L+ Sbjct: 312 LQSVKKEILNHLGSTITLNNCMHPPKQQNKYNSVNKLTSTLFNINSPAHLAQKLYIDNAI 371 Query: 247 -------LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ + K+++ + ++ + ++ R + N+L + Sbjct: 372 LKPIMEYDKGCKSLISKLKTDRKTLIRNLSMHPVIPLILEYRRLVKLISS-FCNSLPKEQ 430 Query: 300 --SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + D ++ G ++TGR S + Sbjct: 431 QGTIDNKIHPIYNSVG-TKTGRMSCSSPNLK 460 >gi|194100384|ref|YP_002003958.1| gp5 [Enterobacteria phage 13a] gi|193201431|gb|ACF15908.1| gp5 [Enterobacteria phage 13a] Length = 704 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698 Query: 672 RY 673 + Sbjct: 699 NW 700 >gi|32442311|gb|AAP82226.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 60/461 (13%), Positives = 122/461 (26%), Gaps = 96/461 (20%) Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 T V++R ++ + ++ +L A + + +N Sbjct: 1 DTLVMSRL--YYPNISDRDYERRPEGMPQRLYGRHSLEAWGYRLKCFKGDFAKNDSNDWS 58 Query: 155 AWQ-LFGEYCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +YC +D + T L++ L E D+ +L G+R D+D Sbjct: 59 TYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDAA 118 Query: 207 LKLQELIAQERKKLDEDIVK--------------------------LTDGIIRSSRQTYA 240 ++++ + E + I + +T + Sbjct: 119 VRVRAQLQDEFDSITNAIAQIYLYVPGKVFTPKRADKKKGYVAGAPMTRLTDFNPTSRQN 178 Query: 241 LRMYLFLITGIDL--------VDMSEGTLKSIL--------SHSNITQLAKDLILNRLAS 284 + L G + E TL + + +L Sbjct: 179 IAWALQTFRGARFTRVTETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKW 238 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 G N+ ++ DG + + +++TGR + + Sbjct: 239 LGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV-------------- 282 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +++ R + G +V ADL G+E R+L + AF + Sbjct: 283 --------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHY------LAAFDS 322 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G V D+V R K + A Y G +L + Sbjct: 323 GSFAEVVVNGDIHQQNADRV-GCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSDAQK 378 Query: 465 NVKSTSTFEDW----EQAESHHLWMQDQYPEFAVKDKLIGT 501 + E ++ + L G Sbjct: 379 KTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDGR 419 >gi|47934690|gb|AAT39783.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934692|gb|AAT39784.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934700|gb|AAT39788.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934702|gb|AAT39789.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 47/231 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ ++ + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + ++IL ++ + LI L + ++ Sbjct: 61 SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPE--AQLIAEYLMIQKR-VGLID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + V + TGR + +P Sbjct: 118 SWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 -SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205 >gi|47934688|gb|AAT39782.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 47/231 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ ++ + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEIFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + ++IL ++ + LI L + ++ Sbjct: 61 SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPE--AQLIAEYLMIQKR-VGLID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + V + TGR + +P Sbjct: 118 SWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 -SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205 >gi|114797270|ref|YP_758935.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] gi|114737444|gb|ABI75569.1| putative exonuclease [Hyphomonas neptunium ATCC 15444] Length = 204 Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 36/204 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D E +G+ A + +TL + D L T P +L L D Sbjct: 21 IAVDTE--------AMGLNAMRDN--LTLVQVSSGDGTAHLVQLTRDYDCP-NLKALLTD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H + F+ ++ K+ +GI CT + +R LK+ Sbjct: 70 PKVLKIFHFARFDVVMMKRWMGITCAP--IWCTKIASRLARTYTDRHGLKDVAR------ 121 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G + K S + +Y DV ++ L + Sbjct: 122 ----EVAGVDM----SKAQQSSDWGQDKLTDAQI------QYAASDVLYLHQIKAGLEAM 167 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 + E L L + R DLD Sbjct: 168 LEREGRLELAQACFDFLPIRADLD 191 >gi|47934682|gb|AAT39779.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 56/230 (24%), Gaps = 45/230 (19%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ + + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEAFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294 + L G +E + I LI L + +++ Sbjct: 61 SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + V + TGR + +P Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205 >gi|154334068|ref|XP_001563289.1| mitochondrial DNA polymerase I protein D [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060301|emb|CAM45712.1| putative mitochondrial DNA polymerase I protein D [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1578 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 52/404 (12%), Positives = 99/404 (24%), Gaps = 86/404 (21%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320 SN +IL A + V S + + TGR Sbjct: 1200 KSNHDDKTASIILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1259 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378 + QN+P++++S +R I+ G K + Sbjct: 1260 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1293 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E LA +A ++ ++ D + D + K Sbjct: 1294 ADYSQLEVVALAVLASDEQMLEDLRQNVDFHCKRVTMMR---PDLKYTDVLQRAK----- 1345 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + S + L Sbjct: 1346 ------------------------KNKELEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1381 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 ++ + ++GV K + + V NV + + Sbjct: 1382 TQDQVRMLIEKENETYRGVEVFNKMVALSA----NSYDASLQNGVRNVRGHQFFKG---M 1434 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 VL + R V+++ L + L VQ + +I+ + M Sbjct: 1435 FPVL-TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1492 Query: 618 ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + TVHD + + + Y V +M Sbjct: 1493 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1536 Score = 71.3 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 80/294 (27%), Gaps = 68/294 (23%) Query: 2 SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y + A +DD V Sbjct: 466 RYLILDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFLPRRYFDRSVALRYDDPSV 525 Query: 43 ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95 L +++ + ++ L L + V+ V HN F+ + + + Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRRFLRRGGKIWD 581 Query: 96 TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T G + L++ + + S Sbjct: 582 TMYAEYLLTGHEVKLGHGAGLEDVAKSYGGQT-----------MKLDAVKQAWSEG---- 626 Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199 + + + EY D+E T +F K + + + L + G Sbjct: 627 KETYEIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLF 246 + +LDL + + + +L + + + L + F Sbjct: 687 KTNLDLAQRQSNELTTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF 740 >gi|319408044|emb|CBI81698.1| Ribonuclease D [Bartonella schoenbuchensis R1] Length = 206 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 54/203 (26%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ Y + + + + D + + +L++ L D Sbjct: 22 IAVDTET--------LGLQPYRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLED 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + + + H F+ + T GI CT + ++ Sbjct: 72 KAITKIFHFGRFDLAILAHTFGI--MPDVVFCTKIASKL-----------------TRTY 112 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + + EY DV L Sbjct: 113 TDRHGLKEICSELLNVNISKQQQSSDWATETLSRAQIEYAASDVLYLHRLKSVFETRLKR 172 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 E + R LDL+ Sbjct: 173 EERENVAKACFQFLPMRAKLDLL 195 >gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099] gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099] Length = 206 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 47/197 (23%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + L + D + +L+ LR+ Sbjct: 22 VAIDTETLGLNP----------HRDRLCLVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 +V + H F+ + G + + CT + +R Sbjct: 72 RSVTKLFHFGRFDLAVLYNAFG--VMPEPVFCTKIASRL-----------------TRTY 112 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I G S + EY DV L L Sbjct: 113 TDRHGLKDICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAR 172 Query: 184 ERDLWLLDQTINDRGYR 200 E D R Sbjct: 173 EGRTKEADACFRFLPTR 189 >gi|47934658|gb|AAT39767.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + E ++ ++ ++ + + Sbjct: 1 ERNGFKLDIPFAHSLMMDLMFEMNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ M+E + +L I + + + + ++ Sbjct: 61 SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R C G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|284991224|ref|YP_003409778.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160] gi|284064469|gb|ADB75407.1| DNA-directed DNA polymerase [Geodermatophilus obscurus DSM 43160] Length = 552 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 72/486 (14%), Positives = 118/486 (24%), Gaps = 141/486 (29%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDI 224 RL L E L+ + G D+ +L + + L +++ Sbjct: 143 HRLALLLAAESSGALVAAEMTHAGLPWRADVHARLLTELLGPRPASGARPAVLEALAQEV 202 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + AL L G+ + D TL+ + +L Sbjct: 203 RAALRAPGLNPDSPGALLAAL-QAAGLPVEDTRSWTLEQL------DHPVVGPLLEYKRL 255 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + DGR R + G TGRW+ ++P Sbjct: 256 ARLLTANGWAWLDTWVRDGRFR-SWFVPGGVVTGRWASNGGGALSVP------------- 301 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR +A +G +LVVAD+A +E RVLA ++G + Sbjct: 302 -----------------TQVRPAAVADDGWRLVVADVAQLEPRVLAGMSG---------D 335 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 A + + + E RA KV L Y + Sbjct: 336 DAMAEAARAADLYEGMVAAGTVETRAQAKVAILGAMYGAT----------------RGES 379 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + +A V L+G AW Sbjct: 380 GRIMPRLARRYPRAIGLVEQAARAGERGDVVHTLLGRGSPRPTGAW-------------- 425 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 V G P R Sbjct: 426 ---AERAVALGEPAEVSGS-------------------PEERDRA--------------- 448 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD------------IVLTVHDEI 632 R +G +VQ + + + + +V +HDE+ Sbjct: 449 -----RRAWGRFTRNFVVQGTGAEWALCWLADLRNRLWRLGGTGPLEQRPHLVFFLHDEV 503 Query: 633 VSETPD 638 V TP+ Sbjct: 504 VVHTPE 509 >gi|47934668|gb|AAT39772.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 47/231 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ ++ + Sbjct: 1 ERNGFKLDVPEAQILHATLVDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKITEFNPG 60 Query: 237 QTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + ++IL ++ + LI L + ++ Sbjct: 61 SRLQIGDRLQELGWKPKQFTETGKAKVDETILESIDLPE--AQLIAEYLMIQKR-VGLID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + V + TGR + +P Sbjct: 118 SWLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP---------------------- 155 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 -SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRCLAHYMQDPEWQEELLN 205 >gi|322830259|gb|EFZ33345.1| mitochondrial DNA polymerase I protein C, putative [Trypanosoma cruzi] Length = 274 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 32/318 (10%), Positives = 82/318 (25%), Gaps = 71/318 (22%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + +E VLA ++ + ++ + D + + P + Sbjct: 1 MIEADYSQLEVVVLAALSRDTRMLQELHDKVDFHCLRVSLMTKEPYEN------------ 48 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + + + + S A Sbjct: 49 ---------------------VVRKAKQERDPHYIQLRQQAKTFSFQRQYGAGIATIATT 87 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR-- 553 L E + A ++ + + ++ + + + A + R Sbjct: 88 TGLTEHEVERLISAEEQHYKDLSRYYRLVMDCVEAGADRLLRLRTLDAATWSPAMRRMIL 147 Query: 554 -HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCE 612 + + V+P+ + ++ K +L VQ ++ +I+ Sbjct: 148 LTEPLHYFVVPTGSKFDFAKDKKSI-----------------PRLKNYPVQGLAGEIVQI 190 Query: 613 GMKNA---------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN-------- 654 +V TVHD + + + V + +M+ Sbjct: 191 MCGKIVRRFYEKRNYDGRAFLVNTVHDCVWIDAHSSVADEVMHDVSEIMSSTSKVMSSLW 250 Query: 655 PSWAKGLPLKAEGYEAKR 672 P +P A+ + Sbjct: 251 PDVKLDVPFNADVHIGPS 268 >gi|256395061|ref|YP_003116625.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928] gi|256361287|gb|ACU74784.1| DNA-directed DNA polymerase [Catenulispora acidiphila DSM 44928] Length = 568 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 56/395 (14%), Positives = 103/395 (26%), Gaps = 71/395 (17%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 +E + + + + + G+ L + L+ I A Sbjct: 217 REMVAMAARLAEALGIRALNPDSAAQVTKAFSDA-GVKLPSLRRWELE------GIDHPA 269 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L S + DGR R G TGRW+ + R+ Sbjct: 270 IPLLLKYKELSRLYSFNGWVWRDTWVVDGRFRPEYS-VGGVVTGRWAARGGGALQIARR- 327 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +IA G V AD A +E R+LA +A Sbjct: 328 -----------------------------LRKAVIADPGWLFVSADAAQLEPRILAAMAQ 358 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +A + Y+ K+ L Y + Sbjct: 359 DPGMAEATQSD-----DMYSALAGVFEGSRD-----QAKLGLLGAMYGQTGGGAAAPLAL 408 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +A + + + +G C + W++ Sbjct: 409 M----------------RRRFPKATALLDDAAREGERGRLVRSQLGRTCPPPSQRWQSAI 452 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 G + G ++ R V++ + VL + R + Sbjct: 453 AGDAEADAADDSNRRS-----GQVARARGRFTRNFVIQATAAEWAEVLLALLRQQLRTLD 507 Query: 575 GDCSYLNTATSQLMRE-RTYGGKLTENIVQ-AISR 607 G L+ R + +TE I+Q A + Sbjct: 508 GPQLVFFQHDEVLVHAPREHAAAVTEMIIQCATAA 542 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 45/212 (21%), Gaps = 40/212 (18%) Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 MA G+ G Sbjct: 353 LAAMAQDPGM----AEATQSDDMY-SALAGVFEGSRDQAKLGL-LGAMYGQTGGGAAAPL 406 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R + L D A + G + ++ P PS R Sbjct: 407 ALMRRRFPKATALLDD----AAREGERGRLVRSQLGRTCPP--------------PSQRW 448 Query: 568 LVYSDVKGDCSYLNTATSQLMRERTYGGKLT-ENIVQAISRDILCEGMKNATKN------ 620 + + + + + G+ T ++QA + + Sbjct: 449 QSAIAGDAEADAADDSNRRSGQVARARGRFTRNFVIQATAAEWA-----EVLLALLRQQL 503 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 G +V HDE++ P +V + Sbjct: 504 RTLDGPQLVFFQHDEVLVHAPREHAAAVTEMI 535 >gi|47934752|gb|AAT39814.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTFRRLKDKVTTFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ + +E + L+ ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVKFTNKTEKGNIIVDEKALNSIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ +AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G KLV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNKLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102] Length = 209 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 60/207 (28%), Gaps = 34/207 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L + V + + +L + Sbjct: 27 IAVDTETMGLLP----------QRDRLCLVQLCNLEGKVTVIRIAKGQTEAPNLKKLFEA 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ V H + F+ + LGI + CT + ++ LK+ Sbjct: 77 ANVVKVFHFARFDIATLRANLGIQVSP--VFCTKIASKLARTYTNRHGLKDV-------- 126 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + K +D N V + Y DV + ++L + Sbjct: 127 -----------VQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVL 207 E + + + LDL+ Sbjct: 176 LKREERWKIAQECFEFLPTIVSLDLLQ 202 >gi|158345045|ref|YP_001522810.1| putative DNA polymerase A [Pseudomonas phage LKD16] gi|114796398|emb|CAK25954.1| putative DNA polymerase A [Pseudomonas phage LKD16] Length = 808 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 42/450 (9%), Positives = 102/450 (22%), Gaps = 85/450 (18%) Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293 + + L L G + S LK++ + AK L+ ++ + Sbjct: 380 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 437 Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + V DG + +L A+ T R S Q LP ++ + Sbjct: 438 TYNKDGSIKDTKGMLQYVDEDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 493 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKI 399 A V+ ++ L D +E +LA ++ + + Sbjct: 494 -----------------EAGSRVKEMFVSRFGPDGMLGETDYTALEVVMLAALSKDRNLL 536 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + + + + Sbjct: 537 ---EKLMAGTDMHLYRLAGKHNNWNGFD-----------------------YDQLVAIKK 570 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + ++ A + A + Sbjct: 571 DPNHEWHGRVMQARKKIKPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 630 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + + + A + + RR + G C Sbjct: 631 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGSDGNWRQY------RRGYWQAPGGTCYS 684 Query: 580 LNTATSQLMRERTYGGKLTENIV-----QAISRDILCEGMKNA-----TKNGY----DIV 625 +R + + Q + ++ + + G+ ++ Sbjct: 685 FRQQERWDKEQRKTVMDFKDTQIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLI 744 Query: 626 LTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 VHD + ++ V + +M Sbjct: 745 NNVHDAVYTDCHKDTAAEVNKGVRDIMADA 774 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 74/271 (27%), Gaps = 36/271 (13%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58 M+ + +D+ET S + + I + A+ D D + Sbjct: 1 MTTIRILDLETES-YEHKGRKASPFDHRNYIVMAAWRDD------VDGKVGQKVEHRFRN 53 Query: 59 -QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN 103 D + VAHN++FE F + L R CT Sbjct: 54 RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113 Query: 104 G----LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 L +L + + ++ + D + Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVDGIKLLWDQGVLTSQMDQDLLSEYLSGPCGDIENTAL 173 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQELIAQ 215 Y + R ++ + + + G ++DL++ K E +A+ Sbjct: 174 VFYGQLMKLQARGMWAGYLERCEALLGF----SAMECAGLKVDLEVAKVNHAKQLEEVAE 229 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 +L + + + Y + +L+ Sbjct: 230 IEAELQKLMPEFPPYFEFKYTSLYHMSAWLY 260 >gi|32442313|gb|AAP82227.1| DNA polymerase [Podovirus GOM] Length = 404 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 57/414 (13%), Positives = 103/414 (24%), Gaps = 121/414 (29%) Query: 95 CTSVLART-----NGL---------------PSSLKNACLALNFSEHLTKMEEGKALIAR 134 T VL+R SL+ L K E GK+L Sbjct: 1 DTLVLSRLFFTDLLDRDFRSRPANMPANLYGRHSLEAWGHRLGV----HKSEFGKSL--- 53 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-------PLSDGERDL 187 + G YC++DV + ++ + D E + Sbjct: 54 --------------DGDWSTYTPEMGAYCQQDVVVSVKVAQLFESKLETHSDCIDTEHRI 99 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI----------------------- 224 + G+ D+D +L+ + E + E++ Sbjct: 100 ADVMAWQERVGFPFDVDKAQQLESKLRTELDAISEEMRSTFAFVDGGCFTPKRSNGPRGY 159 Query: 225 ---VKLTDGIIRSSRQTYALRMYLFL--ITGIDLVDMS---EGTLKSILSHSNITQLAK- 275 + S + F + S+L + K Sbjct: 160 VEGAAMCKLKEFSPTSRDH-IAWAFETFRNWEPKERTASGRAKIDDSVLKEIGSPEALKF 218 Query: 276 -DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + + K L + V+ G++ + + TGR + P Sbjct: 219 ARILELQKHLGQLSEGKNAWLQQEVN--GKIHHSCILN--TNTGRMAHLRPNLAQAPSAP 274 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 R+ + V AD +G+E R LA Sbjct: 275 EY----------------------------RALFHPGTNRLQVGADASGLELRCLAHY-- 304 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 A +G + +T + + R GK + L Y GG Sbjct: 305 -----LAPFDGGKFAESVVHGDIHTDLAAIYGTDRKSGKGVTYCLIYGGGDTKL 353 >gi|159475852|ref|XP_001696028.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii] gi|158275199|gb|EDP00977.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii] Length = 498 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 71/269 (26%), Gaps = 74/269 (27%) Query: 35 YAWDDEPVKLWDRTEQSA--------MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 +A D V D T ++ + ++ ++ V V HN F+R + + +GI Sbjct: 205 FACDT-EVAFIDVTSETPVRLKPHHPILAEFKRFFEHAGVKKVWHNYGFDRHVLEN-MGI 262 Query: 87 DIPSKRWICTSVLARTNGLPSS------LKNA---------------------------C 113 T +AR S L + Sbjct: 263 AAAGFG-GDTLHMARLADASRSGKKTYGLDSLTSDRDVSGGVWDGGGGGTWLGSSPGAKA 321 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA--------NHVQAWQLFGEYCKR 165 AL K+ + RF + +H + + +Y Sbjct: 322 EALVRDMVRAKL----GMKERFGMYRLRGDGPAKVPELPPIHRLHDHPRFRPTWIDYSAL 377 Query: 166 DVEATRELFKRLIPLSDGERD------------------LWLLDQTINDRGYRIDLDLVL 207 D +AT +L + L ER + L + RG ++ + + Sbjct: 378 DAKATWQLREALEAKLRAERVSSSSCTCGTSTAPIGWTLVRELLTEMERRGMMVNREHLR 437 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + Q E + ++ Sbjct: 438 QAQGGEGGEGGGGLGGEEEEIREDHHNTS 466 >gi|116666722|pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts Into The Mechanisms For Processivity, Frameshifting And Editing gi|116666726|pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts Into The Mechanisms For Processivity, Frameshifting And Editing Length = 704 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698 Query: 672 RY 673 + Sbjct: 699 NW 700 >gi|47934666|gb|AAT39771.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + E ++ ++ ++ + + Sbjct: 1 ERNGFKLDIPFAHSLMMDLMFEVNSIEAELQEIFPPIVEERWSEKTGKRLKDKVTVFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ M+E + +L I + + + + ++ Sbjct: 61 SRKQIAERLKG-LGVTFNKMTEKGNIIVDEKVLE--GIDRPEAKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ AV DGR+ G + GA TGR + +P Sbjct: 117 DSWLGAVKDDGRVHGRVITNGA-VTGRMTHQSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R C G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRQCWTVDEGNVLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|212671402|ref|YP_002308401.1| DNA polymerase [Kluyvera phage Kvp1] gi|211997246|gb|ACJ14563.1| DNA polymerase [Kluyvera phage Kvp1] Length = 704 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 45/485 (9%), Positives = 97/485 (20%), Gaps = 144/485 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQL----AKDL 277 + ++ + + L + + +L H + +L Sbjct: 326 YTPVEHVVFNPASRDHITRVLTKAGWVPVEFTPSGAPKVDDEVLEHVKVDDPDAQRCIEL 385 Query: 278 ILNRLASSGSAILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L + DGR+ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQVAEGDNGWLRMIGEDGRIHGSVNPNGA-VTGRATHSFPNVAQVP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA--------SNGKKLVVADLAGIEA 386 + R+ A + V D +G+E Sbjct: 442 --------------------SIRAAYGEPCRAAFGAEHNMKDGKPDPWIQVGVDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R L + + GE + R K Y G Sbjct: 482 RCLGHF------MYRYDEGEYVETILTGDIHTKNQLAAGLPTRDNAKTFIYGFLYGAG-- 533 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + Sbjct: 534 ------------------------------------------AAKIGQIVGGTAEDGKRL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 K + + + ++E + + + + + + + R Sbjct: 552 IKNFLEQTPAI------------AALREAITGTLVKDSKWVGGEQKVTWKRRWVRGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIVETERLLLEAGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG-----LPLKAEGYE 669 + VHDEI + + L + L EG Sbjct: 639 KHGWDGDFAYMAWVHDEI--QVAARTQEIADKIVELAQQAMRNVGDHFNFRCQLDTEGKT 696 Query: 670 AKRYR 674 ++ Sbjct: 697 GANWK 701 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 82/300 (27%), Gaps = 74/300 (24%) Query: 13 PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE---TVMCV 69 + G+ Q CA +D + + L E + V Sbjct: 3 LSDIETNGLLHNVSQFH---CAVTYDYTTDQYIRYRPDDF--GAYIDALEAEVARGGLIV 57 Query: 70 AHNS-LFERILF----KKTLG--IDIPSKRWICTSVLARTNGL----------------- 105 HN ++ + KK LG + P + + T V++R Sbjct: 58 FHNGHKYDIPVIELLAKKLLGRDVKFPKENVLDTLVMSRLIYSNIKDTDAGLLRSGKLPG 117 Query: 106 ----PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFG 160 +L+ L + K K S+ + + + Sbjct: 118 KRFGSHALEAWGYRLGEMKGEYKD---------DFKASLAESGEEYVDGMEWLLFNEDMM 168 Query: 161 EYCKRDVEATRELFKRL-------------------------IPLSDGERDLWLLDQTIN 195 EY +DV T+ LF++L + E D L + Sbjct: 169 EYNVQDVVVTKALFEKLCSNTFYFPNETPAGSTEADRFWNGSLEAVKLEHDAAWLLAKME 228 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G+ ID+ + L +A R +L ++ + T A R TG L Sbjct: 229 RNGFPIDIKSLENLYAELAGRRGELLVELTNTFGSWYSAKGGTEAFR---HPRTGKPLTK 285 >gi|111223189|ref|YP_713983.1| putative DNA polymerase I [Frankia alni ACN14a] gi|111150721|emb|CAJ62422.1| putative DNA polymerase I [Frankia alni ACN14a] Length = 669 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 63/460 (13%), Positives = 102/460 (22%), Gaps = 132/460 (28%) Query: 195 NDRGYRIDLDLVLKLQELI-------------AQERKKLDEDIVKLTDGIIRSSRQTYAL 241 G +D L + A+ R+ +R+ A Sbjct: 280 ERDGLPVDRATAETLLADLVGPPPRTDADELAARRRRDAPVLAHLRGPVDLRNPAAVRAA 339 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 G+D+ D G L+ + + L+ R + L V Sbjct: 340 LR----TVGVDVPDTRSGRLEPL---RDAHPAVAALLAWRRTERIATTYGHRWLDTHVGP 392 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGRLRG + + NLP Sbjct: 393 DGRLRGAWHGSDGAAGRMTA--QAGLHNLPAD---------------------------- 422 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R ++A G+ V ADL IE RVLA ++ + A + P+ Sbjct: 423 --LRCAVVAEPGRVFVRADLGQIEPRVLAVVSADPALAAATQADD----------MYAPV 470 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 RA KV LA Y + Sbjct: 471 AAQLGRDRAHAKVAMLAAMYGQTTGA----------------AGEALRRMRRAYP----- 509 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 Y + A G + L + Sbjct: 510 ---TALAYLDAADAAGRSGR--------------DLRTYGGRLVRLAPAAGPPDRAAGPP 552 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 R P + + R + Sbjct: 553 RGLTDPA----------------------PPDEASPAVGGVTEQARGRFARNA------V 584 Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETP 637 +Q + ++ G +IVL +HDE++ P Sbjct: 585 IQGPAAELFKAWAVTVRAELPALGGEIVLCLHDELLLHVP 624 >gi|9627454|ref|NP_041982.1| DNA polymerase [Enterobacteria phage T7] gi|118856|sp|P00581|DPOL_BPT7 RecName: Full=DNA polymerase; AltName: Full=T7 DNA polymerase gi|15591|emb|CAA24412.1| unnamed protein product [Enterobacteria phage T7] gi|37956666|gb|AAP33936.1| gene 5 [Enterobacteria phage T7] gi|265524990|gb|ACY75853.1| DNA polymerase [Enterobacteria phage T7] Length = 704 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 698 Query: 672 RY 673 + Sbjct: 699 NW 700 >gi|47934738|gb|AAT39807.1| DNA polymerase [Uncultured T7-like podovirus] Length = 209 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 50/232 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D + KL + E ++ ++ + I + Sbjct: 1 ERNGFKLDTEYADKLMMDLMFEMNNIEAELQSIFPPIVEERISEKTGKRLKDKVTIFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L G+ +E + +L ++ + + + + ++ Sbjct: 61 SRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQKR-VAQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +AV DGR+ G + GA TGR + +P Sbjct: 117 GSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP--------------------- 154 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RSC G LV D +G+E R+LA ++ N Sbjct: 155 --AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYMDDEDYTNEILN 204 >gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 562 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 102/360 (28%), Gaps = 59/360 (16%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L I + G + ++ L GI++ + +L + + Sbjct: 202 KALVELAAKISEAFGGRPVNPDSPPSVVRAL-ARAGIEVPAARK----YLLKGIDHPAVG 256 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L S + +DGR R G +GRW+ +P+ Sbjct: 257 P--LLEYKELSRLFTANGWAWLDEWVADGRFRPHYV-VGGVVSGRWASRGGGALQIPK-- 311 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R+C+ A +G KLVVAD A +E RVL ++G Sbjct: 312 ----------------------------VLRTCVRADSGWKLVVADAAQLEPRVLTALSG 343 Query: 395 EDWKIKAFANGEDIYVTTYAKAFN---TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 + A + A P ++ RA K+ L+ Y G + Sbjct: 344 DRRLADVAAATDLYARLGEALFSGARWVPAADDDRDDRARAKIAMLSAMYGGTSG----- 398 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + A S+ +G AWR Sbjct: 399 -----------EAGPLLGLLRQRFPDAVSYVEHAAQAGERGERVRSRLGRTSPAPSAAWR 447 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR-RHKRDVHIVLPSSRRLVY 570 A G+ + + G + V M + LP+ LV+ Sbjct: 448 ALTGGLAS-DEAAELKARRASRGWGRFTRNFVVQASAADMTAVMLATLRTRLPAPAHLVF 506 Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 38/147 (25%), Gaps = 23/147 (15%) Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + R + + E A + G + +R P Sbjct: 399 EAGPLLGLLRQRFPDAVSY----VEHAAQAGERGERVRSRLGRTSPA------------- 441 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT--- 618 PS+ + + R +G +VQA + D+ + Sbjct: 442 -PSAAWRALTGGLASDEAAELKARRASRG--WGRFTRNFVVQASAADMTAVMLATLRTRL 498 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVG 645 +V HDE++ TP V Sbjct: 499 PAPAHLVFFQHDEVIVHTPAALAPEVS 525 >gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A Nucleoside Triphosphate, And Its Processivity Factor Thioredoxin gi|50513551|pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE AND DDATP gi|50513555|pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The Template gi|50513559|pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine Dimer On The Template gi|50513563|pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine Dimer On The Template And An Incoming Nucleotide gi|50513565|pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine Dimer On The Template And An Incoming Nucleotide gi|50513571|pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The Template gi|50513575|pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The Template And An Incoming Nucleotide gi|52695798|pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And Ddctp At The Insertion Site gi|52695802|pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In The Templating Strand gi|52695806|pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And Damp At The Elongation Site gi|52695810|pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And Dcmp At The Elongation Site gi|56553842|pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The Insertion Site. gi|56554410|pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2- Acetylaminofluorene-Adducted Dna gi|56554414|pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA Containing A Disordered N-2 Aminofluorene On The Template, Crystallized With Dideoxy-Ctp As The Incoming Nucleotide. gi|56554418|pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA Containing A Disordered N-2 Aminofluorene On The Template, Crystallized With Dideoxy-Atp As The Incoming Nucleotide Length = 698 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 320 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 379 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 380 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 435 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 436 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 475 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 476 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 529 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 530 KI--------------------------------------------GQIVGAGKERGKEL 545 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 546 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 593 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 594 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 632 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 633 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 692 Query: 672 RY 673 + Sbjct: 693 NW 694 >gi|37956721|gb|AAP33990.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 54/482 (11%), Positives = 97/482 (20%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------SVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + L + + + + + + I R Sbjct: 552 KKKFLKNTPAIAALRESIQQ------------TLVESFQWVAGEQQVKWKRRWIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KIHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGL 698 Query: 672 RY 673 + Sbjct: 699 NW 700 >gi|91974656|ref|YP_567315.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] gi|91681112|gb|ABE37414.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB5] Length = 204 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 37/210 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + + +L + L D Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGHSDAPNLKKLLGD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 TV+ + H + F+ G + + CT + +R LK+ L Sbjct: 70 PTVVKIFHFARFDLAALYNAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L K S T ++ A Y DV L ++L + Sbjct: 124 ----------LNVDLSKQQQSSDWGAETLSDAQLA------YAASDVLHLHGLREKLDAM 167 Query: 181 SDGERD--LWLLDQTINDRGYRIDLDLVLK 208 E L R+DLD + Sbjct: 168 LARENRTDLAQACFGFLPHRSRLDLDGWSE 197 >gi|37956773|gb|AAP34041.1| gene 5 [Enterobacteria phage T7] Length = 704 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 54/482 (11%), Positives = 97/482 (20%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------SVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + L + + + + + + I R Sbjct: 552 KKKFLKNTPAIAALRESIQQ------------TLVESFQWVAGEQQVKWKRRWIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KIHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGL 698 Query: 672 RY 673 + Sbjct: 699 NW 700 >gi|86605802|ref|YP_474565.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] gi|86554344|gb|ABC99302.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 28/203 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET P ++ + + A V L + L + L D Sbjct: 27 LAVDTETMGLIP----------QRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTD 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + + H + F+ + + LGI CT + + Sbjct: 77 PNIEKIFHYARFDLAMLRYHLGIQAWP--VFCTKIAS----------KLARTYTSKH-SL 123 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K G+ C ++ N EY DV + +L + Sbjct: 124 KDVVGE-----LCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQR 178 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 E L + ++LDL+ Sbjct: 179 EERWELAQRCFQHLPTLVELDLL 201 >gi|83753886|pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp Length = 698 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 320 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 379 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 380 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 435 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 436 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 475 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 476 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 529 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 530 AI--------------------------------------------GQIVGAGKERGKEL 545 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 546 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 593 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 594 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 632 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 633 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGP 692 Query: 672 RY 673 + Sbjct: 693 NW 694 >gi|258541780|ref|YP_003187213.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256632858|dbj|BAH98833.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01] gi|256635915|dbj|BAI01884.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03] gi|256638970|dbj|BAI04932.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07] gi|256642024|dbj|BAI07979.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22] gi|256645079|dbj|BAI11027.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26] gi|256648134|dbj|BAI14075.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32] gi|256651187|dbj|BAI17121.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654178|dbj|BAI20105.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12] Length = 217 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 44/210 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSDL 57 + +D ET +G+ + + + L + D L + P +L Sbjct: 27 VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 75 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL 114 + L D ++ + H + F+ + + LGI + +CT + AR L C Sbjct: 76 KRVLADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 133 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 G L + + + Y DV L+ Sbjct: 134 ----------DMLGVELSKQQQTSDWGAKELKPEQ----------LAYAASDVLYLHALW 173 Query: 175 KRLIPLSDGE--RDLWLLDQTINDRGYRID 202 ++ L D E R+L R+D Sbjct: 174 DKMSALLDREGRRELAQACYDFLPARARLD 203 >gi|325842732|ref|ZP_08167767.1| 3'-5' exonuclease [Turicibacter sp. HGF1] gi|325489532|gb|EGC91897.1| 3'-5' exonuclease [Turicibacter sp. HGF1] Length = 232 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 54/194 (27%), Gaps = 37/194 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +DIET L I L A V D + L Sbjct: 63 KIIGVDIETTGLDFLEDS----------IRLIA-------VYSEDFEYVGEDLEAVKTLL 105 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D +V+ V H+S F+ KK I + T ++ + + Sbjct: 106 TDPSVLKVFHHSQFDVCFLKKA---GIDVCTFTDTFIMNQILNNLPVFDSLSR------- 155 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 L K+ GK+L Q YC D + T EL++ + L Sbjct: 156 LAKVYLGKSLDKSLQH----------ADNWQSDLTQEHYAYCLDDAKTTYELYQHMFDLI 205 Query: 182 DGERDLWLLDQTIN 195 + I Sbjct: 206 INRYLYPRYRREIE 219 >gi|157866402|ref|XP_001681907.1| mitochondrial DNA polymerase I protein D [Leishmania major strain Friedlin] gi|68125206|emb|CAJ03183.1| putative mitochondrial DNA polymerase I protein D [Leishmania major strain Friedlin] Length = 1577 Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 55/404 (13%), Positives = 103/404 (25%), Gaps = 86/404 (21%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320 SN A +IL A + V S + + TGR Sbjct: 1199 KSNHNDSAASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1258 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378 + QN+P++++S +R I+ G K + Sbjct: 1259 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1292 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E LA +A ++ ++ N D + D + K + Sbjct: 1293 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAKKI--- 1346 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + S + L Sbjct: 1347 --------------------------KEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1380 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 ++ + ++GV K +T + V NV + + Sbjct: 1381 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 1433 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 VL + R V+++ L + L VQ + +I+ + M Sbjct: 1434 FPVL-TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1491 Query: 618 ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + TVHD + + + Y V +M Sbjct: 1492 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1535 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 41/329 (12%), Positives = 87/329 (26%), Gaps = 74/329 (22%) Query: 2 SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y + A +DD V Sbjct: 466 RYLIVDLETTTIRRYKRIANPFTKENYVVLSGARDYKGNVFMPRRYFDRSIAMRYDDPSV 525 Query: 43 ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95 L +++ + ++ L L + V+ V HN F+ + + + Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581 Query: 96 TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T G + L++ + K + Sbjct: 582 TMYGEYLLTGHEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626 Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199 + + + + EY D+E T +F K + + + L + G Sbjct: 627 KETYEIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252 + ++DL + + + +L + + + L F Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITLFF------ 740 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ T A+ + R Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769 >gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis phage phiA1122] gi|30314111|gb|AAP20519.1| DNA polymerase [Yersinia pestis phage phiA1122] Length = 704 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 58/482 (12%), Positives = 102/482 (21%), Gaps = 140/482 (29%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDEITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHS---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTPYFSV--GTLCSLMTKNPS-WAKGLPLKAEGYEAK 671 + VHDEI V T M W L EG Sbjct: 639 KHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIDTAQEAMRWVGDHWNFRCLLDTEGKMGP 698 Query: 672 RY 673 + Sbjct: 699 NW 700 >gi|182437857|ref|YP_001825576.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466373|dbj|BAG20893.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 558 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 127/484 (26%), Gaps = 126/484 (26%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ ++ G D+ +L + + +L +++ Sbjct: 156 RMRLLTASESAGMLVAAEMHRDGLPWRADVHRELLTGLLGERYAGGGEPRRLAELADEVS 215 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F GI + L+ + A + ++ Sbjct: 216 AAFGRRVRPDLPADVVKA--FARAGIPVKSTRRWELEEL------DHPAVEPLIAYKKLY 267 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + +GR R G + +GRW+ +P+ Sbjct: 268 RIWTAHGWSWLQDWVREGRFRPEY-QPGGTVSGRWTTNGGGALQIPK------------- 313 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD +E RVLA I+ + ++ + Sbjct: 314 -----------------VIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHD 356 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464 D+Y +AF+ + K+ L Y + K +A+ Sbjct: 357 GDLYKALSDRAFSGDREH--------AKLAMLGAIYGQTSGDGLKNLAAL---------- 398 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + A ++ E V +G Sbjct: 399 -------RRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPP------------------- 432 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 A Q+ + + R V+G + Sbjct: 433 ---AASAGQDEEAGLPQEDPEGSGGAPDGGPARAR-----GRFTRNFVVQGSAADWALLM 484 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DTPYFS 643 +R + Q + +V HDE++ P + Sbjct: 485 LAALRRTIFE--------QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521 Query: 644 VGTL 647 V + Sbjct: 522 VEAI 525 >gi|17570811|ref|NP_523320.1| DNA polymerase [Enterobacteria phage T3] gi|118853|sp|P20311|DPOL_BPT3 RecName: Full=DNA polymerase gi|15702|emb|CAA35140.1| 5 [Enterobacteria phage T3] gi|17384295|emb|CAC86283.1| DNA polymerase [Enterobacteria phage T3] Length = 704 Score = 75.1 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 56/483 (11%), Positives = 104/483 (21%), Gaps = 140/483 (28%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL 277 + ++ + ++ L + + L+ + Q A DL Sbjct: 326 YTPVEHVVFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V+ DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEA 386 + R+ I D +G+E Sbjct: 442 --------------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + F NGE + R K Y G + Sbjct: 482 RCLAHF------MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + Sbjct: 536 KI--------------------------------------------GQIVGAGKERGKEL 551 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 KK + + +Q+ S++ VA ++ +R I R Sbjct: 552 KKKFLENTPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGR 599 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGY 622 ++ ++Q+ I + + G Sbjct: 600 KVHVRSPHA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGL 638 Query: 623 D--------IVLTVHDEIVSETPDTP-YFSVGTL-CSLMTKNPS-WAKGLPLKAEGYEAK 671 + +HDEI +V + M W L EG Sbjct: 639 KHGWDGDFAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGA 698 Query: 672 RYR 674 ++ Sbjct: 699 NWK 701 >gi|282554654|ref|YP_003347671.1| DNA polymerase [Klebsiella phage KP34] gi|262410487|gb|ACY66751.1| DNA polymerase [Klebsiella phage KP34] Length = 786 Score = 74.8 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 48/388 (12%), Positives = 94/388 (24%), Gaps = 83/388 (21%) Query: 288 AILKLNTLSEAV---SSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ K + + + V + DG + L A+ TGR SG QNLPR S Sbjct: 429 SVKKTSGMLQYVIPQNPDGSGIIHHRLNTC-ATVTGRLSGSNPNLQNLPRDGTS------ 481 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK--KLVVADLAGIEARVLAWIAGEDWKIK 400 V+ + G+ ++ D + +E + G+ + Sbjct: 482 --------------------RVKQMFTSRFGESGRITEVDYSALEVVMGCVHTGDRKLLS 521 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 G D++ A +++ Y D++ Sbjct: 522 LLQAGTDMHCYRLAFKEGKTYEEMYDLC-----HNADGPDY--------KYWKQQRTDIK 568 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S A + + Sbjct: 569 PPS-----------------FAAQYGATAKGIAFATGCTVEYAQSFLDNEAKLFPDTIGF 611 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + E EG R R R P+ R YS + + Sbjct: 612 RAVVKEEVERTGAEG-----RLYREQADDGSYRVYRIGTWTSPAGAR--YSFRQKEQWKE 664 Query: 581 NTATSQLMRERTYGG-KLTENIVQA-------ISRDILCEGMKNAT--KNGYDIVLTVHD 630 + + Y ++ Q ++ ++ + N ++ VHD Sbjct: 665 VVPEQRKQKVMDYKETEMANYWCQGEAFFLMAVAAGMVLRALLARDWFDNQVCLITNVHD 724 Query: 631 EIVSETPDTPYF-SVGTLCS-LMTKNPS 656 + ++ + L M P Sbjct: 725 ALYLDSANPEVGREASLLVKQCMEDAPK 752 >gi|289178750|gb|ADC85996.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 672 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 58/223 (26%), Gaps = 13/223 (5%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D + D L + L H + + + +P T++ Sbjct: 424 DGHAVVVD-PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLG-AVNLRLPMV-LFDTNL 480 Query: 99 LARTNGL---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL++ + + D + Sbjct: 481 AGYLIDPDFQGGSLQDCADHFLHRH--AEEVTETEQGTLDIGMDDERAERDRKVVRNAAI 538 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 L + + L+ D E + + G +D + +L E+ Sbjct: 539 VSLLAR--TLARQLEQRCQYSLLR--DIELPTSVALFHMEHTGASVDRARLDELLEMFTD 594 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 E ++++ + + + + L + LF G++ ++ Sbjct: 595 ESNRMEQICYEAAGHEV-NLQSPKQLGVVLFEEMGLNPTKKTK 636 >gi|17570813|ref|NP_523322.1| gene 5B protein [Enterobacteria phage T3] gi|579192|emb|CAA35141.1| 5B [Enterobacteria phage T3] gi|17384297|emb|CAC86285.1| gene 5B protein [Enterobacteria phage T3] Length = 372 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 56/476 (11%), Positives = 102/476 (21%), Gaps = 140/476 (29%) Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLAS 284 + + ++ L + + L+ + Q A DLI L Sbjct: 1 MFNPSSRDHIQKKLQEAGWVPTKFTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMI 60 Query: 285 SGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 V+ DG++ G++ GA TGR + +P Sbjct: 61 QKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGA-VTGRATHAFPNLAQIP---------- 109 Query: 342 QTIQALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIA 393 + R+ I D +G+E R LA Sbjct: 110 -------------GVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF- 155 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + F NGE + R K Y G + Sbjct: 156 -----MARFDNGEYAHEILNGDIHTKNQMAAELPTRDNAKTFIYGFLYGAGDEKI----- 205 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + +KK + Sbjct: 206 ---------------------------------------GQIVGAGKERGKELKKKFLEN 226 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + +Q+ S++ VA ++ +R I R++ Sbjct: 227 TPAI--------AALRESIQQTLVESSQWVAGEQQVKWKRR----WIKGLDGRKVHVRSP 274 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD------ 623 ++Q+ I + + G Sbjct: 275 HA---------------------ALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGD 313 Query: 624 --IVLTVHDEIVSETPDTP-YFSVGTL-CSLMTKNPS-WAKGLPLKAEGYEAKRYR 674 + +HDEI +V + M W L EG ++ Sbjct: 314 FAYMAWIHDEIQVACRTEEIAKTVIEVAQEAMRWVGEHWNFRCLLDTEGKMGANWK 369 >gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1419 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 46/379 (12%), Positives = 92/379 (24%), Gaps = 108/379 (28%) Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + DGR+ A+ T R QN+P+ ++S Sbjct: 1062 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1102 Query: 356 PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR ++ G + V D + +E VLA + + +G D +V Sbjct: 1103 --------VRRLFVSRFGSQGRCVEVDYSQLEIVVLAILCNDANLTHDLNHGVDFHVKRA 1154 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A P D++ + GY+ + + Sbjct: 1155 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1180 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + S P + E + + G+ Q + + Sbjct: 1181 RTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEAYPGIAQFHRTIRSVALRPNN 1240 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 G S +P+ R+ + Sbjct: 1241 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1267 Query: 594 GGKLTENIVQAISRDILCEGMK----------NATKNGYDIVLTVHDEIVSETPDTPY-F 642 + +Q + L + M + KN ++ VHD + + Sbjct: 1268 LPPIKNYPIQGYGAE-LAQMMLGRLFRHFMRRDFYKNRAFLINFVHDSVWMDCHVDVLRE 1326 Query: 643 SVGTLCSLMTKNPSWAKGL 661 V C ++ + + Sbjct: 1327 CVTDTCRILGSAHEYVPKV 1345 >gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus] Length = 228 Score = 74.8 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 43/257 (16%) Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 D +A + A +Y + + ++ PL +++ Y+ + Sbjct: 8 WLLDQRKATDLVAELKEKQY-----DLEETVHEKFKPLPTFVKEIV--------PKYKKN 54 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEG 259 +L + + ++ ++ ++ + + YL L Sbjct: 55 GELSSVGLKFLGEDWTQVGGTFSRIDWPEF-NLGSRQQIGRYLRLFGWKPEKFTETGQAV 113 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 + L A LI L I ++ + +AV DGR+ G + GA TGR Sbjct: 114 VDEKTLETVTDIPEA-QLIAEYLMVGKR-IAQVQSSLDAVEDDGRVHGQVNAIGA-VTGR 170 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + P R+C I +G KLV Sbjct: 171 MTHSSPNMAQTP-----------------------AVGVPYGYECRACWIVPDGHKLVGV 207 Query: 380 DLAGIEARVLAWIAGED 396 D +G+E R+LA + Sbjct: 208 DASGLELRMLASFMNDP 224 >gi|209551599|ref|YP_002283516.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537355|gb|ACI57290.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 208 Score = 74.4 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIASGQKEAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 T + H F+ + T G+ CT + +R LK+ Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLIRTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + A + QL EY DV L +L Sbjct: 123 ---------NLKEMLDVDISKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTER 171 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 172 LLRDGRFDHATACFAFLPTRAKLDLL 197 >gi|115522454|ref|YP_779365.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] gi|115516401|gb|ABJ04385.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisA53] Length = 204 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 29/175 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQSAMPSDLLQYL 61 + ID ET +G+ + + + + + D + A +L + L Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPLGHTEA--PNLKKLL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALN 117 D V + H + F+ LG + + CT + +R LK+ L Sbjct: 68 GDPAVTKIFHFARFDLSALSNALG--VMPQPIYCTKIASRLCRTYTDRHGLKDLVREVLG 125 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + + L + D RE Sbjct: 126 IDL---------SKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLARE 171 >gi|77118186|ref|YP_338108.1| DNA polymerase [Enterobacteria phage K1F] gi|72527930|gb|AAZ72982.1| DNA polymerase [Enterobacteria phage K1F] gi|84095014|emb|CAJ29370.2| gp5 protein [Enterobacteria phage K1F] Length = 723 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 96/768 (12%), Positives = 180/768 (23%), Gaps = 158/768 (20%) Query: 7 DIETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 DIET GV AE A P+ + + Sbjct: 11 DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGI-VGGFKEYVQKVEEIAAT 65 Query: 64 ETVMCVAHN-SLFERIL---FKK-TLG--IDIPSKRWICTSVLARTN-------GLPS-- 107 T M V HN ++ K+ G + P + I T VL R + + Sbjct: 66 PTGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125 Query: 108 ------------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ L +G+ K + Y + Sbjct: 126 AGRLPPKMMGRQSLEAWGYRLG-------EMKGEYKHDYVAKCKAEGIEYKAGDE-WLFP 177 Query: 156 WQLFGEYCKRDVEATRELFKRLIPL----------------SDGERDLWLLDQTINDRGY 199 Q +Y +DV T LFK+ + E D + GY Sbjct: 178 SQEMLDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGY 237 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGIDLVD--- 255 ++ ++V L + +R +L + + S + + TG DL Sbjct: 238 PMNTEMVEGLYRELTVKRAELLDKLR----STFGSWYAPKGGKEFFRHPRTGKDLPKYPR 293 Query: 256 ----------MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSEAVSS 301 L + +D + + + + + L++ + Sbjct: 294 VVYPKVGGIFKKPKNKAQRLGLEPCERDTRDTMEGAPFTPITYVEFNPGSGDHLAKVLME 353 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 G G + + + + E++ + + R A+ Sbjct: 354 RGWEPVDFTDTGKPVVDDETLEHVKLPD-AEAQACVELVREYLVVQKRIGQAAEGKNAWL 412 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +G+ + G + + ANG T Sbjct: 413 KL-----VGPDGRMHGSINPCGAVTGRATHSS--PNMAQVPANGAPYGETCRGAFGAAWN 465 Query: 422 DKVSKEQRAI-----GKVMEL------ALGYQGGAKVF--------KTMASHCGLDLQQF 462 K I +EL A + GGA A + GL Sbjct: 466 KTDGKPDPWIQVGVDASGLELRCLGNRAAPFDGGAYAKTVVEGDIHWANAVNAGLAPNVP 525 Query: 463 SQNVKSTS-TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 F + + + + + + K + + L Sbjct: 526 RDKSNHDHDAFRNNAKTFIYAFLYGAGAAKIGLIVGGGKKEGSALMKKFIEGTPAIKDL- 584 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 V ++ V + +R + RR+ Sbjct: 585 -------REAVSNTLISESKWVDGENIVKWKRR----WLKGLDGRRIHIRSPHS------ 627 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD--------IVLTVH 629 ++Q + + + GY + VH Sbjct: 628 ---------------ALNALLQGDGAVVCKHWIVETERMLEEAGYVHGWEGDFAYMAWVH 672 Query: 630 DEIVSETPDTP-YFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYR 674 DE+ + L M K + L EG ++ Sbjct: 673 DELQIACRTQEIAERTVEIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720 >gi|326424982|ref|YP_004286204.1| putative DNA polymerase [Pseudomonas phage phi15] gi|325048386|emb|CBZ41999.1| putative DNA polymerase [Pseudomonas phage phi15] Length = 722 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 71/270 (26%), Gaps = 77/270 (28%) Query: 56 DLLQYLR----DETVMCVAHN-SLFERILFKKTL------GIDIPSKRWICTSVLARTNG 104 D ++ L + V HN ++ K ++IP ++ + T VL+R Sbjct: 42 DYIKALEAEAAKPDGLIVFHNGIKYDIPALAKIKKSLTGKNLNIPRQKVLDTLVLSRLLH 101 Query: 105 L---------------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 SL+ L + K Sbjct: 102 ANLKNTDAGLLRKGILPGDRYGSHSLEAWGYRLGEMKGEYKD------------DFKRDL 149 Query: 144 PYDCTRANHVQAWQLFGE----YCKRDVEATRELFKRLI--------------------- 178 W+ F E YC++DV T +L ++ + Sbjct: 150 AARGETYVDGMEWEHFNEPMYDYCEQDVRVTLKLLRKFLADKFYFGSDVAPNGEQWMGGI 209 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E + + G+ + +L + +A ER L +++ T Sbjct: 210 RAVRLEHEAAWTLAQMERNGFPFNKQKAERLYQELAAERSDLLVKLIETFGTW---WAPT 266 Query: 239 YALRMYLFLITGI-----DLVDMSEGTLKS 263 +L TG +V ++ Sbjct: 267 KGTEPFLHPKTGKVLSKYPMVKRAKSGNAD 296 Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 71/305 (23%), Gaps = 56/305 (18%) Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKD 276 I + I S ++ L + TL+ + + Q A Sbjct: 320 IYTPIEHITFSPTSRDHIQKVLKDAGWEPTEFTDKGAPIVDDETLEGVTVDDPVKQAAIT 379 Query: 277 LILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LI L L + DG + G++ GA TGR + +P Sbjct: 380 LIQRYLMIQKRIGQLAEGKKAWLLYCETEDGFIHGSINPNGAG-TGRATHSHPNMGQVP- 437 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-----NGK---KLVVADLAGI 384 R A+ G V D +G+ Sbjct: 438 ----------------------SAKSPYGPECRELFGAAYASHLPGWEAVVQVGRDASGL 475 Query: 385 EARVLAWI-------AGEDWKIKAFANGEDIYVTTYAKA-FNTPIDKVSKEQRAIGKVME 436 E R L A + + + + AK D+ R K Sbjct: 476 ELRCLGHFGAKFDGGAYVEQVLNGDVHWANAVAAGIAKDPVRIKGDEQHDRWRDNAKTFI 535 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 A Y G G K S E+ +S + + + Sbjct: 536 YAFLYGAGNGKI---GQIVGGGESHGKALKK--SFLENTPVIKSLSDSLIEALVAEQKWN 590 Query: 497 KLIGT 501 + Sbjct: 591 NVTKR 595 >gi|91205563|ref|YP_537918.1| ribonuclease D [Rickettsia bellii RML369-C] gi|157827279|ref|YP_001496343.1| ribonuclease D [Rickettsia bellii OSU 85-389] gi|91069107|gb|ABE04829.1| Ribonuclease D [Rickettsia bellii RML369-C] gi|157802583|gb|ABV79306.1| Ribonuclease D [Rickettsia bellii OSU 85-389] Length = 203 Score = 74.4 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 35/187 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ Y + + L ++ + L Q+ +L L D Sbjct: 20 LAIDTET--------MGLNLYRD--KLCLLQFSNGNGDAHLVHFLNQNYNAPNLKNLLSD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + + H + F+ KK LGID+ + CT + ++ LK+ C L Sbjct: 70 KERCKIFHFARFDLAAIKKYLGIDL--ENIFCTKISSKLVRTYTESHGLKDICREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 A+++ + Q EY +DV +L + LI + Sbjct: 124 --------------LGVNISKQQQSSYWGADNLSSDQQ--EYAAKDVLYLHKLREHLIEM 167 Query: 181 SDGERDL 187 E Sbjct: 168 LVKENRF 174 >gi|32442307|gb|AAP82224.1| DNA polymerase [Podovirus SOG] Length = 419 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 63/460 (13%), Positives = 122/460 (26%), Gaps = 96/460 (20%) Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 T VL+R ++ + ++ +L A + + +N Sbjct: 1 DTLVLSRL--YYPNISDRDYERRPDGMPQRLYGRHSLEAWGYRLKCFKGDFAKNDSNDWS 58 Query: 155 AWQ-LFGEYCKRDVEATRELFKRLI-------PLSDGERDLWLLDQTINDRGYRIDLDLV 206 + +YC +D + T L++ L E D+ +L G+R D+D Sbjct: 59 TYTPEMLDYCIQDTQVTLRLYELLQRRMETYADYIKLEMDMAMLMAQQEASGFRFDMDAA 118 Query: 207 LKLQELIAQERKKLDEDIVK--------------------------LTDGIIRSSRQTYA 240 ++++ + E + E I K +T + Sbjct: 119 VRVRAQLQDEFDSITEAIAKIYLYVPGKVFTPKRADKKRGYVAGAPMTRLTDFNPTSRQN 178 Query: 241 LRMYLFLITGIDL--------VDMSEGTLKSIL--------SHSNITQLAKDLILNRLAS 284 + L G + E TL + + +L Sbjct: 179 IAWALQTFRGARFTKITETGKPKVDEATLSEVRDIALSAGNQQLHDECEMFIRLLTLQKW 238 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 G N+ ++ DG + + +++TGR + + Sbjct: 239 LGQLSEGTNSWFNSIEGDGCIHHSC--TLSTQTGRNAHRGPNLGQV-------------- 282 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +++ R + G +V ADL G+E R+L + AF Sbjct: 283 --------------VSAPWARELFVPHPGHIMVGADLEGLELRLLGHY------LAAFDE 322 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G V D+V R K + A Y G +L + Sbjct: 323 GSFAEVVVNGDIHQQNADRV-GCTRTQVKTLTYAFIYGAGDVKL---GHSLQPELSDAQK 378 Query: 465 NVKSTSTFEDW----EQAESHHLWMQDQYPEFAVKDKLIG 500 + E ++ + L G Sbjct: 379 KTLGGELRRKFLDAIPGLEPLVDAVKLKVRSTGRLKGLDG 418 >gi|42520711|ref|NP_966626.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410451|gb|AAS14560.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila melanogaster] Length = 206 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 36/207 (17%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + + +D E +G+ + + L +++D L P +L + Sbjct: 19 IRSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKI 67 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALN 117 L D+ + + H + F+ + + L + + CT + +R SLK CL L Sbjct: 68 LEDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL- 124 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 L + K S + + Y DV + ++L Sbjct: 125 -------------LDTKLNKQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKL 165 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD 204 + + E L + RI+LD Sbjct: 166 DLMLERENRKELAQKCFEFLPTRIELD 192 >gi|47934638|gb|AAT39757.1| DNA polymerase [Uncultured T7-like podovirus] Length = 205 Score = 74.4 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 32/171 (18%) Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT--LKSILSHSNITQLAKDLILNRLASSGS 287 + + + L + +G + + + LIL L Sbjct: 54 VEVFNPASRQQIARRLESKGVVWEKRTEKGNIIVDETTLGAYVDVPEAVLILEYLTLGKR 113 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + + +A SDGR+ G + G + TGR + +P Sbjct: 114 S-AMVKGWLDAYESDGRIHGYVNSNG-TVTGRMTHSNPNMAQIPS--------------- 156 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 RSC + G+KLV D +G+E R+LA +D Sbjct: 157 -------------GAEYRSCFVVPQGRKLVGVDASGLELRMLAHYMRDDAF 194 >gi|326778493|ref|ZP_08237758.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1] gi|326658826|gb|EGE43672.1| DNA-directed DNA polymerase [Streptomyces cf. griseus XylebKG-1] Length = 558 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 62/484 (12%), Positives = 127/484 (26%), Gaps = 126/484 (26%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ ++ G D+ +L + + +L +++ Sbjct: 156 RMRLLTASESAGMLVAAEMHRDGLPWRADVHRELLTGLLGERYAGGGEPRRLAELADEVS 215 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F GI + L+ + A + ++ Sbjct: 216 AAFGRRVRPDLPADVVKA--FARAGIPVKSTRRWELEEL------DHPAVEPLIAYKKLY 267 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + +GR R G + +GRW+ +P+ Sbjct: 268 RIWTAHGWSWLQDWVREGRFRPEY-QPGGTVSGRWTTNGGGALQIPK------------- 313 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD +E RVLA I+ + ++ + Sbjct: 314 -----------------VIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHD 356 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464 D+Y +AF+ + K+ L Y + K +A+ Sbjct: 357 GDLYKALSDRAFSGDREH--------AKLALLGAVYGQTSGDGLKNLAAL---------- 398 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + A ++ E V +G Sbjct: 399 -------RRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPP------------------- 432 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 A Q+ + + R V+G + Sbjct: 433 ---AASAGQDEEAGLPQEDPEGSGGAPDGGPARAR-----GRFTRNFVVQGSAADWALLM 484 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DTPYFS 643 +R + Q + +V HDE++ P + Sbjct: 485 LAALRRTIFE--------QGL---------------RAQLVFFQHDEVIVHCPAEESAAV 521 Query: 644 VGTL 647 V + Sbjct: 522 VEAI 525 >gi|58698542|ref|ZP_00373443.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] gi|58534924|gb|EAL59022.1| 3'-5' exonuclease [Wolbachia endosymbiont of Drosophila ananassae] Length = 234 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 36/206 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D E +G+ + + L +++D L P +L + L Sbjct: 48 RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 96 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D+ + + H + F+ + + L + + CT + +R SLK CL L Sbjct: 97 EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 152 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L + K S + + Y DV + ++L Sbjct: 153 ------------LDTKLNKQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKLD 194 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204 + + E L + RI+LD Sbjct: 195 LMLERENRKELAQKCFEFLPTRIELD 220 >gi|254718341|ref|ZP_05180152.1| hypothetical protein Bru83_02133 [Brucella sp. 83/13] gi|265983300|ref|ZP_06096035.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306839563|ref|ZP_07472369.1| 3'-5' exonuclease [Brucella sp. NF 2653] gi|264661892|gb|EEZ32153.1| 3'-5' exonuclease [Brucella sp. 83/13] gi|306405349|gb|EFM61622.1| 3'-5' exonuclease [Brucella sp. NF 2653] Length = 205 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCMVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ + H F+ + G + CT + ++ Sbjct: 71 RSITKIFHFGRFDLAVLANAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + Q EY DV L L + Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171 Query: 184 ERDLWLLDQTINDRGYR 200 + + R Sbjct: 172 DGRTKQAEACFKFLPTR 188 >gi|302868656|ref|YP_003837293.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029] gi|302571515|gb|ADL47717.1| DNA-directed DNA polymerase [Micromonospora aurantiaca ATCC 27029] Length = 552 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 71/290 (24%), Gaps = 63/290 (21%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L I + L F G+DL + L+ + A Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARVGVDLPNTRAWVLRGVE------HPA 255 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L +A S GR G +GRW+ +P+ Sbjct: 256 APLVLEYKELYRIWTAHGWAWRDAWVSGGRFHPEYVPGGV-VSGRWATRGGGALQIPK-- 312 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R ++A G VVAD +E RVLA ++ Sbjct: 313 ----------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAVSE 344 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ A G+ RA KV L Y Sbjct: 345 DERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA------- 388 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 +++ A + + +G C Sbjct: 389 ---------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 429 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 23/199 (11%) Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 A + + ++ + + + + + + G A Sbjct: 329 ADAGQLEPRVLAAVSEDERLAAAGGAGDLYAALARDAFAGDRAKAKVALLGAMYGQTGGA 388 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + E A + GG + + P + + + Sbjct: 389 AVPALAVLRKNYPTAFGY----VEAAARTGEAGGLVRSWLGRTCPPGSAGFAEGEEAM-- 442 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMKNATKN 620 P +D +++ R R G ++QA + + Sbjct: 443 PDG----GADPHS-------PSARAARSR--GRFTRNFVIQATAAEWASTLLATLRTELA 489 Query: 621 G--YDIVLTVHDEIVSETP 637 G ++V HDE++ P Sbjct: 490 GTEAELVFFQHDEVMVHCP 508 >gi|228907507|ref|ZP_04071364.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200] gi|228851999|gb|EEM96796.1| DNA polymerase I (POL I) [Bacillus thuringiensis IBL 200] Length = 235 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 30/181 (16%) Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++T+ A + R + ++ R+ + + + +T Sbjct: 16 NITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRRFKETILKATSSST 75 Query: 583 ATSQLM--RERTYGGKLTENIVQAISRDILCEGMKNA----------------------- 617 ++ R + +Q S + + M N Sbjct: 76 FKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYK 135 Query: 618 ---TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWA-KGLPLKAEGYEAKR 672 ++ IVL +HDE++ + P + + ++M G+ ++ + + Sbjct: 136 SILEEHDIHIVLQIHDELIFDVPQDVSQDVLKKISNIMLNAIPSTHLGVTFHSDIHTSPY 195 Query: 673 Y 673 + Sbjct: 196 W 196 >gi|228969100|ref|ZP_04130014.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str. T04001] gi|229073434|ref|ZP_04206570.1| DNA polymerase I (POL I) [Bacillus cereus F65185] gi|228709741|gb|EEL61779.1| DNA polymerase I (POL I) [Bacillus cereus F65185] gi|228790589|gb|EEM38276.1| DNA polymerase I (POL I) [Bacillus thuringiensis serovar sotto str. T04001] Length = 235 Score = 74.0 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 53/181 (29%), Gaps = 30/181 (16%) Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++T+ A + R + ++ R+ + + + +T Sbjct: 16 NITKAAATSLINQFKKQLPNFLRWESETHREVLTNGYVKDLFGRKRRFKETILKATSSST 75 Query: 583 ATSQLM--RERTYGGKLTENIVQAISRDILCEGMKNA----------------------- 617 ++ R + +Q S + + M N Sbjct: 76 FKNKNSDWRLEKIKRQSCNFKIQGTSATQVKKAMVNLFYPTRPDGTKCLDRDEWLQENYK 135 Query: 618 ---TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWA-KGLPLKAEGYEAKR 672 ++ IVL +HDE++ + P + + ++M G+ ++ + + Sbjct: 136 SILEEHDIHIVLQIHDELIFDVPQDVSQDVLKEISNIMLNAIPSTHLGVTFHSDIHTSPY 195 Query: 673 Y 673 + Sbjct: 196 W 196 >gi|225630598|ref|YP_002727389.1| 3'-5' exonuclease [Wolbachia sp. wRi] gi|225592579|gb|ACN95598.1| 3'-5' exonuclease [Wolbachia sp. wRi] Length = 206 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 36/206 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D E +G+ + + L +++D L P +L + L Sbjct: 20 RSIAVDTE--------AMGLLHGRD--RLCLVQLSFNDGNAHLVQLKNDYTAP-NLRKIL 68 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D+ + + H + F+ + + L + + CT + +R SLK CL L Sbjct: 69 EDKNITKIFHFARFDVSIIRYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L + K S + + Y DV + ++L Sbjct: 125 ------------LDTKLNKQQQSSDWGNENLTDKQ------KSYAASDVLYLHRIKEKLD 166 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204 + + E L + RI+LD Sbjct: 167 LMLERENRKELAQKCFEFLPTRIELD 192 >gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708] gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708] Length = 209 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 28/204 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L V + +L Q L Sbjct: 27 IAVDTETMGLLP----------QRDRLCLVQLCNSQGKVTAICIAKGQTEAPNLKQLLEA 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ V H + F+ + ++I + CT + ++ ++L Sbjct: 77 THILKVFHFARFDVATLRH--NLEIQVQPVFCTKIASKLARTYTNLHGL----------- 123 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K ++ + +D N V + Y DV + ++L + + Sbjct: 124 -----KDVVQELEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLER 178 Query: 184 ERDLWLLDQTINDRGYRIDLDLVL 207 E L Q + LDL+ Sbjct: 179 EGRWELAQQCFQVLPTLVSLDLLQ 202 >gi|167041251|gb|ABZ06007.1| putative 3'-5' exonuclease [uncultured marine microorganism HF4000_005D21] gi|167045755|gb|ABZ10401.1| putative 3'-5' exonuclease [uncultured marine bacterium HF4000_APKG3108] Length = 214 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 32/205 (15%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID E G+ ++L ++ + + +S ++++ L + Sbjct: 29 LAIDTE--------GSGLQIPHRD-KLSLVQFSAGNNDAYIVQPNRKSYKAPNIVKILEN 79 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSE 120 + + H ++ + L K T + ++ LK+ L Sbjct: 80 AKITKIGHYLRYDVSGLEYFL--KCNVKNIFDTKIASKLCRTYSQNHGLKDLALEF---- 133 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K L R + Y+ T A +YC DV ++ L + Sbjct: 134 ------CSKKLDKRLGSSDWNKNLYELTDA--------QLQYCSNDVIYLHKIKDALYKM 179 Query: 181 SDGERDLWLLDQTINDRGYRIDLDL 205 E L L + I RI LD Sbjct: 180 LVRENRLELYESCIQFLKTRIKLDQ 204 >gi|157803820|ref|YP_001492369.1| ribonuclease D [Rickettsia canadensis str. McKiel] gi|157785083|gb|ABV73584.1| ribonuclease D [Rickettsia canadensis str. McKiel] Length = 203 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 67/206 (32%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L ++ + L Q+ +L L D Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFENQNYTAPNLKALLSD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 ++ + H + F+ KK L +I + CT + ++ LK+ C L Sbjct: 70 KSRCKIFHFARFDLAAIKKYL--EIELENIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 RA+++ EY +DV +L L + Sbjct: 124 --------------LNINISKQQQSSYWRADNLS--SEQKEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E L R +LDL+ Sbjct: 168 LLKENRFELAQDIFRFVPTRANLDLL 193 >gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4] gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4] Length = 513 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 50/348 (14%), Positives = 85/348 (24%), Gaps = 75/348 (21%) Query: 194 INDRGYRIDLDLVLKLQE----------LIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 + G D E + Q + + +I G + + Sbjct: 148 MGFDGLPFSTDSHRAFLEATLGPRPAGYDLPQRIQDVSVEIGAAF-GRRINPASHVEVVD 206 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 F GI+L + L+ + A L+L+ S ++ D Sbjct: 207 -AFRREGIELASTRKHLLREV------DHPAVPLLLHHRDLSKLFSTNGWQWLDSWVRDN 259 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R R G +GRW+ +P+ Sbjct: 260 RFRPVYVPGGV-VSGRWASRGGGALQIPKP------------------------------ 288 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS +IA G V+AD +E R+LA ++G+ + A + Sbjct: 289 LRSSVIADPGHTFVIADAGQLEPRILAAMSGDTRMVAAAGADDLYAPVAAETFDG----- 343 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 R KV L + Y A T + A + Sbjct: 344 ----DRGKAKVAILGVLYGATAG----------------EARSLLTLLRTRFPVAVEYVE 383 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 V +G AC + H + Sbjct: 384 RAARAGERGEVVHSWLGRACPPPSPDFW-SHGDARSRGRFTRNFVVQA 430 >gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424] Length = 209 Score = 74.0 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 63/204 (30%), Gaps = 34/204 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + L + V T+ L Q + Sbjct: 27 IAVDTET--------MGLNPHRD--RLCLIQLCDPEGYVTAIRVTKGQQEAPKLKQLMEA 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + V H + F+ + GI+ + CT + ++ LK+ L Sbjct: 77 SNITKVFHFARFDVAQLRHHFGIE--TTPIFCTKIASKLARTYTSSHGLKSL--VL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 EG L D N + + Y DV + ++LI + Sbjct: 129 ----ELEGVEL---------DKTAQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 + E + L N + LD Sbjct: 176 LNRENRMELARNCFNCLPVLVSLD 199 >gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425] Length = 217 Score = 74.0 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 35/215 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 ++ +D ET +G+ + + L A + + + L Q L Sbjct: 34 RIAVDTET--------MGLKPQRD--RLCLVQLAHPQGLITVIRIGQGQRSAPHLKQLLE 83 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFS 119 V H + F+ + L I + CT + + RT L Sbjct: 84 HPGTTKVFHFARFDITTLRYHLDIWVQP--LFCTKIASKLARTYSPRHGL---------- 131 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K LI +D N + Y DV +L+ Sbjct: 132 ---------KDLIRELEGVELDKTVQSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVE 182 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + E W L Q + +L+ + + Sbjct: 183 MLQRENR-WQLAQECFHCLPTLASLDLLEFEAIFE 216 >gi|323359890|ref|YP_004226286.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276261|dbj|BAJ76406.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 499 Score = 73.6 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 52/358 (14%), Positives = 86/358 (24%), Gaps = 74/358 (20%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ++ L + + + ++ + D S L L G+ + Sbjct: 113 HGELLERQLGERRGQALPARIEEAAGRVRAALDDPAASLDSQPRLLKSLH-RVGLFVEST 171 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S L +++ T DGR R G Sbjct: 172 SRWELAE------HDHPVVAPLVSYKKLMRLYTANGWTWMSEWVRDGRFRPVYVPAGV-V 224 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGRW+ +PR +R + A G L Sbjct: 225 TGRWASSGGGALQIPR------------------------------QLRVAVRADPGWTL 254 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD+A +E RVLA +A + A + + + RA K+ Sbjct: 255 VTADVAQLEPRVLAAMARDTALADAARRRDLYSGVV---------EAGAVATRAEAKIAM 305 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 L Y + +A + E V Sbjct: 306 LGAMYGATTG----------------ESGRLLPRLRRTFPRAMALVDHAARVGEEGGVVS 349 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 +G +AWR + G + R + R R+ Sbjct: 350 TWLGRTSPGPGEAWR-----------AVQSRAGDAEASGIDETRARRSARDRGRFTRN 396 >gi|315504872|ref|YP_004083759.1| DNA-directed DNA polymerase [Micromonospora sp. L5] gi|315411491|gb|ADU09608.1| DNA-directed DNA polymerase [Micromonospora sp. L5] Length = 552 Score = 73.6 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 71/290 (24%), Gaps = 63/290 (21%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L I + L F G+DL + L+ + A Sbjct: 203 RRLAELQARIADAFGVRQVHADSPAELLR-AFARAGVDLPNTRAWVLRGVE------HPA 255 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L +A S GR G +GRW+ +P+ Sbjct: 256 APLVLEYKELYRIWTAHGWAWRDAWVSGGRFHPEYVPGGV-VSGRWATRGGGALQIPK-- 312 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R ++A G VVAD +E RVLA ++ Sbjct: 313 ----------------------------VIRQAVVADPGWTFVVADAGQLEPRVLAAVSE 344 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 ++ A G+ RA KV L Y Sbjct: 345 DERLAAAGGAGDLYAALARDAFAG---------DRAKAKVALLGAMYGQTGGA------- 388 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 +++ A + + +G C Sbjct: 389 ---------AVPALAVLRKNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 429 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 23/199 (11%) Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 A + + ++ + + + + + + G A Sbjct: 329 ADAGQLEPRVLAAVSEDERLAAAGGAGDLYAALARDAFAGDRAKAKVALLGAMYGQTGGA 388 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + E A + GG + + P + + + Sbjct: 389 AVPALAVLRKNYPTAFGY----VEAAARTGEAGGLVRSWLGRTCPPGSAGFAEGEEAM-- 442 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMKNATKN 620 P +D +++ R R G ++QA + + Sbjct: 443 PDG----GADPHS-------PSARAARSR--GRFTRNFVIQATAAEWASTLLATLRTELA 489 Query: 621 G--YDIVLTVHDEIVSETP 637 G ++V HDE++ P Sbjct: 490 GTEAELVFFQHDEVMVHCP 508 >gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39] Length = 207 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 29/211 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L V +L L Sbjct: 25 LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ V H + F+ + LGI++ CT + + Sbjct: 75 TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIAS----------KLARTYTGKH--- 119 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K LI +D N + Y DV +L + Sbjct: 120 ---GLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKR 176 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L + +++ ++ Sbjct: 177 EERWDLALDCFQCLPTIV-TLDLMQFDDIFK 206 >gi|329114438|ref|ZP_08243200.1| Ribonuclease D [Acetobacter pomorum DM001] gi|326696514|gb|EGE48193.1| Ribonuclease D [Acetobacter pomorum DM001] Length = 256 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 44/210 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSDL 57 + +D ET +G+ + + + L + D L + P +L Sbjct: 66 VAVDTET--------MGLNPHRD--RLCLVQLSAGDGTAHLVQIIPTSLGGKGYDCP-NL 114 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACL 114 + + D ++ + H + F+ + + LGI + +CT + AR L C Sbjct: 115 KRVMADPSITKIMHFARFDVAILQHALGITVSP--VVCTKIAARLVRTFTDRHGLAALCR 172 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 G L + + + Y DV L+ Sbjct: 173 ----------DMLGVELSKQQQTSDWGALELKPEQ----------LAYAASDVLYLHALW 212 Query: 175 KRLIPLSDGE--RDLWLLDQTINDRGYRID 202 ++ L D E R+L R+D Sbjct: 213 DKMSALLDREGRRELAQACYDFLPARARLD 242 >gi|163842395|ref|YP_001626799.1| hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] gi|163673118|gb|ABY37229.1| Hypothetical protein BSUIS_A0125 [Brucella suis ATCC 23445] Length = 205 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ + H F+ + G + CT + ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + Q EY DV L L + Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171 Query: 184 ERDLWLLDQTINDRGYR 200 + + R Sbjct: 172 DGRTKQAEACFKFLPTR 188 >gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054] Length = 562 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 51/338 (15%), Positives = 86/338 (25%), Gaps = 74/338 (21%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA-----------QERKKLDEDIVKLTDGII 232 E LL + G D+ L + + +L ++ + Sbjct: 171 ESAGALLACEMAHDGLPWRADVHDALLTELLGPRPAIPGTQPAKLAELALEVQRALGARP 230 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + G+ L LK++ A L++ S Sbjct: 231 FNLDSHTQVIKAFADR-GVQLSSTRSWELKAV------DHPAAALLVRYKELSRLHAAHG 283 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 A + GR R G TGRW+ +PR Sbjct: 284 WAWQAAWARGGRFRPEYV-VGGVVTGRWASRGGGALQIPRT------------------- 323 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R ++A G LVVAD A +E RVLA ++G+ + A G+ Sbjct: 324 -----------LRRAVVADPGWLLVVADAAQLEPRVLAALSGDAGLARTAAGGDLYAALA 372 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + R K+ L Y + + Sbjct: 373 ASAFHG---------DREQAKLGLLGAMYGQTGGGIGPLLNTL----------------R 407 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + A + + V +G C W Sbjct: 408 RRYPDAMGYVEAAARTGEDGGVVASRLGRVCPPPSADW 445 >gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 513 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 88/333 (26%), Gaps = 67/333 (20%) Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 G + + F GI+L + L+ + A L+L S Sbjct: 192 FGRRINPASHVEVVD-AFRREGIELASTRKHLLREV------DHPAVPLLLRHRDLSKLF 244 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ D R R G +GRW+ +P+ Sbjct: 245 STNGWQWLDSWVRDDRFRPVYVPGGV-VSGRWASRGGGALQIPKP--------------- 288 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +RS +IA G V+AD +E R+LA ++G+ + A + Sbjct: 289 ---------------LRSSVIADPGHTFVIADAGQLEPRILAAMSGDARMVAAAGADDLY 333 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 R KV L + Y A Sbjct: 334 APVAAETFDG---------DRGKAKVAILGVLYGATAG----------------EARSLL 368 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR----AKHQGVLQLWKDL 524 T + A + V +G AC + A+ +G + Sbjct: 369 TLLRTRFPVAVEYVERAARAGERGEVVHSWLGRACPPPSPDFWSHGDARSRGRFTRNFVV 428 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 A + RR+A+ P + + D Sbjct: 429 QATAAEWALCVLADLRRRLADDPDSELVFFQHD 461 >gi|17988111|ref|NP_540745.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M] gi|62289101|ref|YP_220894.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82699039|ref|YP_413613.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148559185|ref|YP_001258158.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189023376|ref|YP_001934144.1| 3'-5' exonuclease [Brucella abortus S19] gi|225626663|ref|ZP_03784702.1| ribonuclease D [Brucella ceti str. Cudo] gi|225851660|ref|YP_002731893.1| hypothetical protein BMEA_A0127 [Brucella melitensis ATCC 23457] gi|237814593|ref|ZP_04593591.1| ribonuclease D [Brucella abortus str. 2308 A] gi|254690430|ref|ZP_05153684.1| hypothetical protein Babob68_09714 [Brucella abortus bv. 6 str. 870] gi|254694918|ref|ZP_05156746.1| hypothetical protein Babob3T_09702 [Brucella abortus bv. 3 str. Tulya] gi|254696124|ref|ZP_05157952.1| hypothetical protein Babob28_00020 [Brucella abortus bv. 2 str. 86/8/59] gi|254700933|ref|ZP_05162761.1| hypothetical protein Bsuib55_08749 [Brucella suis bv. 5 str. 513] gi|254707182|ref|ZP_05169010.1| hypothetical protein BpinM_09468 [Brucella pinnipedialis M163/99/10] gi|254709273|ref|ZP_05171084.1| hypothetical protein BpinB_03206 [Brucella pinnipedialis B2/94] gi|254713304|ref|ZP_05175115.1| hypothetical protein BcetM6_08117 [Brucella ceti M644/93/1] gi|254716342|ref|ZP_05178153.1| hypothetical protein BcetM_07890 [Brucella ceti M13/05/1] gi|254731461|ref|ZP_05190039.1| hypothetical protein Babob42_09744 [Brucella abortus bv. 4 str. 292] gi|256030796|ref|ZP_05444410.1| hypothetical protein BpinM2_09123 [Brucella pinnipedialis M292/94/1] gi|256045912|ref|ZP_05448786.1| hypothetical protein Bmelb1R_15494 [Brucella melitensis bv. 1 str. Rev.1] gi|256060264|ref|ZP_05450439.1| hypothetical protein Bneo5_07870 [Brucella neotomae 5K33] gi|256112626|ref|ZP_05453547.1| hypothetical protein Bmelb3E_08085 [Brucella melitensis bv. 3 str. Ether] gi|256158817|ref|ZP_05456678.1| hypothetical protein BcetM4_08038 [Brucella ceti M490/95/1] gi|256254202|ref|ZP_05459738.1| hypothetical protein BcetB_07895 [Brucella ceti B1/94] gi|256258682|ref|ZP_05464218.1| hypothetical protein Babob9C_15316 [Brucella abortus bv. 9 str. C68] gi|256264829|ref|ZP_05467361.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|256368584|ref|YP_003106090.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260169700|ref|ZP_05756511.1| 3'-5' exonuclease family protein [Brucella sp. F5/99] gi|260546398|ref|ZP_05822138.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260563197|ref|ZP_05833683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260755977|ref|ZP_05868325.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260759201|ref|ZP_05871549.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260760489|ref|ZP_05872835.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260884998|ref|ZP_05896612.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|261215252|ref|ZP_05929533.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|261218123|ref|ZP_05932404.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261221350|ref|ZP_05935631.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|261314663|ref|ZP_05953860.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261316779|ref|ZP_05955976.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261321030|ref|ZP_05960227.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261324237|ref|ZP_05963434.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261751448|ref|ZP_05995157.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|261759236|ref|ZP_06002945.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|265987850|ref|ZP_06100407.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|265992324|ref|ZP_06104881.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|265994066|ref|ZP_06106623.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|265997310|ref|ZP_06109867.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|294851524|ref|ZP_06792197.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297247517|ref|ZP_06931235.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306842591|ref|ZP_07475240.1| 3'-5' exonuclease [Brucella sp. BO2] gi|17983864|gb|AAL53009.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M] gi|62195233|gb|AAX73533.1| 3-5 exonuclease family protein [Brucella abortus bv. 1 str. 9-941] gi|82615140|emb|CAJ10073.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308] gi|148370442|gb|ABQ60421.1| 3'-5' exonuclease family protein [Brucella ovis ATCC 25840] gi|189018948|gb|ACD71670.1| 3'-5' exonuclease [Brucella abortus S19] gi|225618320|gb|EEH15363.1| ribonuclease D [Brucella ceti str. Cudo] gi|225640025|gb|ACN99938.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789430|gb|EEP63640.1| ribonuclease D [Brucella abortus str. 2308 A] gi|255998742|gb|ACU47141.1| 3'-5' exonuclease family protein [Brucella microti CCM 4915] gi|260096505|gb|EEW80381.1| 3'-5' exonuclease [Brucella abortus NCTC 8038] gi|260153213|gb|EEW88305.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. 16M] gi|260669519|gb|EEX56459.1| 3'-5' exonuclease [Brucella abortus bv. 4 str. 292] gi|260670924|gb|EEX57745.1| 3'-5' exonuclease [Brucella abortus bv. 2 str. 86/8/59] gi|260676085|gb|EEX62906.1| 3'-5' exonuclease [Brucella abortus bv. 6 str. 870] gi|260874526|gb|EEX81595.1| 3'-5' exonuclease [Brucella abortus bv. 9 str. C68] gi|260916859|gb|EEX83720.1| 3'-5' exonuclease [Brucella abortus bv. 3 str. Tulya] gi|260919934|gb|EEX86587.1| 3'-5' exonuclease [Brucella ceti B1/94] gi|260923212|gb|EEX89780.1| 3'-5' exonuclease [Brucella ceti M13/05/1] gi|261293720|gb|EEX97216.1| 3'-5' exonuclease [Brucella ceti M644/93/1] gi|261296002|gb|EEX99498.1| 3'-5' exonuclease [Brucella pinnipedialis B2/94] gi|261300217|gb|EEY03714.1| 3'-5' exonuclease [Brucella neotomae 5K33] gi|261303689|gb|EEY07186.1| 3'-5' exonuclease [Brucella pinnipedialis M163/99/10] gi|261739220|gb|EEY27216.1| 3'-5' exonuclease [Brucella sp. F5/99] gi|261741201|gb|EEY29127.1| 3'-5' exonuclease [Brucella suis bv. 5 str. 513] gi|262551778|gb|EEZ07768.1| 3'-5' exonuclease [Brucella ceti M490/95/1] gi|262765047|gb|EEZ10968.1| 3'-5' exonuclease [Brucella melitensis bv. 3 str. Ether] gi|263003390|gb|EEZ15683.1| 3'-5' exonuclease [Brucella melitensis bv. 1 str. Rev.1] gi|263095285|gb|EEZ18912.1| 3'-5' exonuclease [Brucella melitensis bv. 2 str. 63/9] gi|264660047|gb|EEZ30308.1| 3'-5' exonuclease [Brucella pinnipedialis M292/94/1] gi|294820113|gb|EFG37112.1| ribonuclease D [Brucella sp. NVSL 07-0026] gi|297174686|gb|EFH34033.1| 3'-5' exonuclease [Brucella abortus bv. 5 str. B3196] gi|306287236|gb|EFM58724.1| 3'-5' exonuclease [Brucella sp. BO2] gi|326408140|gb|ADZ65205.1| 3'-5' exonuclease [Brucella melitensis M28] gi|326537851|gb|ADZ86066.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 205 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ + H F+ + G + CT + ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + Q EY DV L L + Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171 Query: 184 ERDLWLLDQTINDRGYR 200 + + R Sbjct: 172 DGRTKQAEACFKFLPTR 188 >gi|47934696|gb|AAT39786.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 45/230 (19%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+++D+ L + ++ ++ ++ + Sbjct: 1 ERNGFKLDVPEAQILHATLIDRMAIIEAEMQEVFPPIVEERWSEKTGKQLKDKVTEFNPG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILS--HSNITQLAKDLILNRLASSGSAILKLNT 294 + L G +E + I LI L + +++ Sbjct: 61 SRLQIGDRLQE-LGWKPKQFTETGKAKVDETILEAIDLPEAQLIAEYLMIQKR-VGLIDS 118 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + V + TGR + +P Sbjct: 119 WLKYVDEKTERVHGGIITLGTITGRMAHRSPNLGQVP----------------------- 155 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 RS +G +L+ DL+GIE R LA + + N Sbjct: 156 SVAKPYGKECRSLFTVEDGNRLIGCDLSGIELRRLAHYMQDPEWQEELLN 205 >gi|38707863|ref|NP_944958.1| Putative DNA polymerase [Enterobacteria phage Felix 01] gi|33340466|gb|AAQ14817.1| putative DNA polymerase [Enterobacteria phage Felix 01] Length = 906 Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 58/452 (12%) Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 ER L + I + L ++E + +I Sbjct: 467 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 525 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +++R + ++ + DGRL GA G +G + Q Sbjct: 526 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 571 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + + + +R+ I G ++ D + +L G+ Sbjct: 572 ------------YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGD 619 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--------VSKEQRAIGKVMELALGYQGGAKV 447 + KA G++ T K R + + A Sbjct: 620 EDFTKAVTEGKESVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHT 679 Query: 448 FKT--MASHCGLDLQQFSQNVKSTSTFE---DWEQAESHHLWMQDQYPEFAVKDKL---I 499 + + D+ + + E ++A++ + + + Sbjct: 680 LNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASS 739 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 L K+ + + + +L L E F + + + A ++ + Sbjct: 740 TEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLW 799 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 P L Y+ + + N + RE T N Sbjct: 800 CKSPHKL-LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPA 844 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 G V + HDE+ E P V + M Sbjct: 845 IGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 876 >gi|159475854|ref|XP_001696029.1| hypothetical protein CHLREDRAFT_175586 [Chlamydomonas reinhardtii] gi|158275200|gb|EDP00978.1| predicted protein [Chlamydomonas reinhardtii] Length = 259 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 55/220 (25%), Gaps = 23/220 (10%) Query: 363 CVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 VR A G LVVAD +E R+LA + ++AF G D + T ++ Sbjct: 31 KVRQAFTADVAAGHTLVVADYGQLELRLLAHMTDCKSMLEAFVLGGDFHSRTAVGMYDHI 90 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 D + K + G ++ + + Sbjct: 91 KDAIRDN---------------------KVLLEWDGEGESPLPLVKDLYASERRKAKVLN 129 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + A K + W A V Q + EG + + Sbjct: 130 FSIAYGKTAHGLAADFKTSKEEAQATVDKWYADRFEVRQWQEKTKEGARQEGKVRTLLGR 189 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 R + K ++ SY Sbjct: 190 TRPLPGINAPDFKSKGHSERAAINTPIQPLFKPSITRSYR 229 >gi|284053636|ref|ZP_06383846.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca] Length = 209 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 49/198 (24%), Gaps = 28/198 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L V +L L Sbjct: 27 LAIDTET--------MGLLPWRD--RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ V H + F+ + LGI++ CT + + Sbjct: 77 TNILKVFHFARFDVATLRHNLGIEVNP--VFCTKIAS----------KLARTYTGKH--- 121 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K LI +D N + Y DV +L + Sbjct: 122 ---GLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLKR 178 Query: 184 ERDLWLLDQTINDRGYRI 201 E L + Sbjct: 179 EERWDLALDCFQCLPTIV 196 >gi|241207041|ref|YP_002978137.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860931|gb|ACS58598.1| 3'-5' exonuclease [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 208 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 50/203 (24%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEARNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 T + H F+ + T G+ + CT + +R Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--ATPVFCTKIASRLI-----------------RTY 114 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G + S + + EY DV L +L Sbjct: 115 TDRHGLKDNLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIR 174 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 175 DGRYDHATACFEFLPTRAKLDLL 197 >gi|33340353|gb|AAQ14704.1|AF320576_163 putative DNA polymerase [Enterobacteria phage Felix 01] Length = 909 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 57/452 (12%), Positives = 117/452 (25%), Gaps = 58/452 (12%) Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 ER L + I + L ++E + +I Sbjct: 470 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 528 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +++R + ++ + DGRL GA G +G + Q Sbjct: 529 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 574 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + + + +R+ I G ++ D + +L G+ Sbjct: 575 ------------YGIVNVPSGAAVYGEPMRAVWICEEGTDIISVDQNSAQLVLLCNFMGD 622 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--------VSKEQRAIGKVMELALGYQGGAKV 447 + KA G++ T K R + + A Sbjct: 623 EDFTKAVTEGKESVEFTKQDDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHT 682 Query: 448 FKT--MASHCGLDLQQFSQNVKSTSTFE---DWEQAESHHLWMQDQYPEFAVKDKL---I 499 + + D+ + + E ++A++ + + + Sbjct: 683 LNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKAKNGIYALLFGAGDEKFAKTIKASS 742 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 L K+ + + + +L L E F + + + A ++ + Sbjct: 743 TEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLW 802 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 P L Y+ + + N + RE T N Sbjct: 803 CKSPHKL-LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPA 847 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 G V + HDE+ E P V + M Sbjct: 848 IGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 879 >gi|269794009|ref|YP_003313464.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Sanguibacter keddieii DSM 10542] gi|269096194|gb|ACZ20630.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Sanguibacter keddieii DSM 10542] Length = 568 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 74/494 (14%), Positives = 117/494 (23%), Gaps = 140/494 (28%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 RL L E L+ + G D+ ++ + R L Sbjct: 163 RLWLLLAAESAGALIAAEMTVAGVPWDVVEHDRILTDLLGPRPAL-------GYRPALLE 215 Query: 236 RQTYALRMYLFLITGIDLV---------DMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + L + +D T I A +L S Sbjct: 216 AKAAQVSAALGVEVNLDSPVELLRSMRSAGLPATSTRSWELQQIDHPAIAPLLEYKKMSR 275 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + +DGR R G TGRW+ LP Sbjct: 276 LMTANGWHWLDTWVADGRFRPVYVPGGV-VTGRWASDGGGALQLP--------------- 319 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +RS + + G LVVAD A +E R+LA ++G+ Sbjct: 320 ---------------HQIRSAVRSDPGWSLVVADAAQLEPRILAAMSGD---------AA 355 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 A + + + E R K L Y Sbjct: 356 MAEAGRAADMYEGMVATGAVETRQQAKFGMLGAMY------------------------- 390 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 G + +A+ L E Sbjct: 391 --------------------------GGTQGESGRMLPRITRAFPQAL--------ALVE 416 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA-TS 585 A ++G +S + P LPS+ + Sbjct: 417 AAARAGEQGEVVSTWLGRSSP--------------LPSAEWRSAHSAASAEGGSAAEQEA 462 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGY----DIVLTVHDEIVSE 635 + R++G +VQ + + M A G + +HDEI+ Sbjct: 463 VRTQARSWGRFTRNFVVQGTAAEWALCWMSLLRLRLRALSEGLTDGPHLAFFLHDEIMVH 522 Query: 636 TPDTPYFSVGTLCS 649 TP V TL Sbjct: 523 TPTGLADEVATLVQ 536 >gi|192288480|ref|YP_001989085.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] gi|192282229|gb|ACE98609.1| 3'-5' exonuclease [Rhodopseudomonas palustris TIE-1] Length = 204 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 23/177 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + + +L + L D Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 V+ + H + F+ K G + + CT + +R LK+ L Sbjct: 70 PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + + DS L K D RE L Sbjct: 124 ----LGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDKLDTMLARENRTDL 176 >gi|321399177|emb|CAM66559.2| putative mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5] Length = 1579 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 101/404 (25%), Gaps = 86/404 (21%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320 SN +IL A + V S + + TGR Sbjct: 1201 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1260 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378 + QN+P++++S +R I+ G K + Sbjct: 1261 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1294 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E LA +A ++ ++ N D + D + K + Sbjct: 1295 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAKKI--- 1348 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + S + L Sbjct: 1349 --------------------------KEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1382 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 ++ + ++GV K +T + V NV + + Sbjct: 1383 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 1435 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 VL + R V+++ L L VQ + +I+ + M Sbjct: 1436 FPVL-TGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1493 Query: 618 ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + TVHD + + + Y V +M Sbjct: 1494 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 41/329 (12%), Positives = 88/329 (26%), Gaps = 74/329 (22%) Query: 2 SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y + A +DD V Sbjct: 466 RYLIVDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPSV 525 Query: 43 ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95 L +++ + ++ L L + V+ V HN F+ + + + Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581 Query: 96 TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T G + L++ + K + Sbjct: 582 TMYGEYLLTGHEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626 Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199 + + + + EY D+E T +F K + + + L + G Sbjct: 627 KETYEIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252 + ++DL + + + +L + + + L + F Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------ 740 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ T A+ + R Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769 >gi|114769797|ref|ZP_01447407.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|114549502|gb|EAU52384.1| exonuclease, putative [alpha proteobacterium HTCC2255] gi|161170293|gb|ABX59263.1| 5-exonuclease family protein [uncultured marine bacterium EB000_55B11] gi|297183821|gb|ADI19944.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 204 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 35/201 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + ID ET P+ + + ++ D + + ++ + L Sbjct: 19 IVAIDTETMGLNPMRD----------RLCVIQFSSGDGHAHIVQIEPDAPQAPNICKILL 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119 D+ + + H + F+ + K I+I CT + ++ LKN Sbjct: 69 DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLRE---- 122 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 S + + + EY DV +L +L Sbjct: 123 ----------------MLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNL 166 Query: 180 LSDGERDLWLLDQTINDRGYR 200 E + + N R Sbjct: 167 NLKRENRYEIAEACFNFLPMR 187 >gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802] Length = 210 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L V L Q + Sbjct: 28 IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T++ V H + F+ + GI+ CT + ++ LK+ L Sbjct: 78 KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 131 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 I + Y DV ++LI + Sbjct: 132 ---------EGIELDKTSQSSDWGNSANLSVAQL------SYAANDVRYLIPAKEKLITM 176 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L +Q N + LD + + +++ Sbjct: 177 LQREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209 >gi|322497562|emb|CBZ32636.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1579 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 101/404 (25%), Gaps = 86/404 (21%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320 SN +IL A + V S + + TGR Sbjct: 1201 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 1260 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378 + QN+P++++S +R I+ G K + Sbjct: 1261 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 1294 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E LA +A ++ ++ N D + ++ K E Sbjct: 1295 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMRPDLKYTDVLQRSKKIKEPEF- 1353 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + S + L Sbjct: 1354 -------------------------------VKLRQQAKIFSFQRQYGAGVRMLSQSTGL 1382 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 ++ + ++GV K +T + V NV + + Sbjct: 1383 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 1435 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 VL + R V+++ L L VQ + +I+ + M Sbjct: 1436 FPVL-TGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 1493 Query: 618 ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + TVHD + + + Y V +M Sbjct: 1494 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 41/329 (12%), Positives = 88/329 (26%), Gaps = 74/329 (22%) Query: 2 SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y + A +DD V Sbjct: 466 RYLIVDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPSV 525 Query: 43 ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95 L +++ + ++ L L + V+ V HN F+ + + + Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581 Query: 96 TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T G + L++ + K + Sbjct: 582 TMYGEYLLTGHEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626 Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199 + + + + EY D+E T +F K + + + L + G Sbjct: 627 KETYEIPYSILTEYLHGDLENTELIFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGL 686 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252 + ++DL + + + +L + + + L + F Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRQLEESIPHEIPHDCRKFFNWSSNQHLITFFF------ 740 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ T A+ + R Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769 >gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei] Length = 1404 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 47/444 (10%), Positives = 108/444 (24%), Gaps = 128/444 (28%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLA-----SSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + T++ + L ++L + + + +DGRL Sbjct: 1004 KEKRTIEQLRKRHLDEATFVVLQRHKLEVAGLLLQKLQLERGSANFLHSGTDGRLSILHS 1063 Query: 311 FYGASRTGRWSGCV--------FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 + + QN+P+ ++S Sbjct: 1064 DNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSS------------------------- 1098 Query: 363 CVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R ++ G+K V D + +E V+A + ++ + G D +V + Sbjct: 1099 -LRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGIS 1157 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 D++ GY+ G F + + S Sbjct: 1158 YDEIYN-------------GYKRGEAKFLKL---------------------RKVAKTFS 1183 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 P + + + ++ G+ + + G Sbjct: 1184 FQRLYGAGVPLLHKTTGIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHF 1243 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + LP+ R+ Y + + Sbjct: 1244 I------------------VELPTGLRVCY---------------KTRDVVLNLPPVKNY 1270 Query: 601 IVQAISRDILCEGMK-NATK---------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCS 649 +Q+ + L + M + ++ VHD + + + V + Sbjct: 1271 PIQSFGAE-LAQMMIGRVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRT 1329 Query: 650 LMTKN--------PSWAKGLPLKA 665 +M + P +PLK Sbjct: 1330 IMEEVDTYVAKTFPGVKLKVPLKV 1353 >gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei TREU927] gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma brucei] gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1404 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 47/444 (10%), Positives = 108/444 (24%), Gaps = 128/444 (28%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLA-----SSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + T++ + L ++L + + + +DGRL Sbjct: 1004 KEKRTIEQLRKRHLDEATFVVLQRHKLEVAGLLLQKLQLERGSANFLHSGTDGRLSILHS 1063 Query: 311 FYGASRTGRWSGCV--------FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 + + QN+P+ ++S Sbjct: 1064 DNKVRQYIDLTATTTSRTTSSYPSCQNIPKDDKSS------------------------- 1098 Query: 363 CVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R ++ G+K V D + +E V+A + ++ + G D +V + Sbjct: 1099 -LRHLFVSRFGEKGRCVEIDYSQLEIVVMAVLCEDERLVSDLNQGVDFHVKRASFFSGIS 1157 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 D++ GY+ G F + + S Sbjct: 1158 YDEIYN-------------GYKRGEAKFLKL---------------------RKVAKTFS 1183 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 P + + + ++ G+ + + G Sbjct: 1184 FQRLYGAGVPLLHKTTGIPVQDLQECIRREEEEYPGISRFHRLARTVALRANNPGLPTHF 1243 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + LP+ R+ Y + + Sbjct: 1244 I------------------VELPTGLRVCY---------------KTRDVVLNLPPVKNY 1270 Query: 601 IVQAISRDILCEGMK-NATK---------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCS 649 +Q+ + L + M + ++ VHD + + + V + Sbjct: 1271 PIQSFGAE-LAQMMIGRVFRQFVRKSFYGQKAFMINFVHDSLWLDCHMSVLEECVHETRT 1329 Query: 650 LMTKN--------PSWAKGLPLKA 665 +M + P +PLK Sbjct: 1330 IMEEVDTYVAKTFPGVKLKVPLKV 1353 >gi|159476518|ref|XP_001696358.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii] gi|158282583|gb|EDP08335.1| PolI-like DNA polymerase [Chlamydomonas reinhardtii] Length = 894 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 41/314 (13%), Positives = 83/314 (26%), Gaps = 60/314 (19%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ +A G+ LV AD + IE R+LA ++ + Sbjct: 616 RAAFVAPAGRLLVSADYSQIELRLLAHLS------------------------------I 645 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 S R K + A+ Y + S G+++ +S + +S Sbjct: 646 SSRDREQAKRIIYAIIYGMSPQGLAQALSDHGVEV--KEATALRSSFLRHFAGVQSFITS 703 Query: 485 MQDQYPEFAVKDK-LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 L+G + A ++L + + +G + ++ Sbjct: 704 SLHHARRHGFITTGLLGRRRPISGLASND-----VRLRAEAERKVVNSIVQGSAADLIKM 758 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 A ++ G + Sbjct: 759 AMTMWGTYSHPPAAGANEQQKQKQPQPQQTGGAAGAATGTRAAATDAAPQLPPGCPPP-- 816 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS----LMTKNPSWAK 659 + D++ ++HDEI+ E D + L + LM A Sbjct: 817 -------------LEEGCVDLIGSIHDEILFEC-DARPEVLQRLVAAVRCLMCGVV--AL 860 Query: 660 GLPLKAEGYEAKRY 673 +PL + + + Sbjct: 861 DVPLCVKLSVGQSW 874 >gi|306844394|ref|ZP_07476984.1| 3'-5' exonuclease [Brucella sp. BO1] gi|306275207|gb|EFM56957.1| 3'-5' exonuclease [Brucella sp. BO1] Length = 205 Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIDAGQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ + H F+ + G + CT + ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + Q EY DV L L + Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171 Query: 184 ERDLWLLDQTINDRGYR 200 + + R Sbjct: 172 DGRTKQAEACFKFLPTR 188 >gi|260460457|ref|ZP_05808708.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] gi|259033562|gb|EEW34822.1| 3'-5' exonuclease [Mesorhizobium opportunistum WSM2075] Length = 206 Score = 73.2 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 46/197 (23%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ LR+ Sbjct: 22 VAIDTETLGLNP----------HRDRLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + + H F+ + G + + CT + +R Sbjct: 72 RGITKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRL-----------------TRTY 112 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I G S + EY DV L L Sbjct: 113 TDRHGLKDICFELLGVGLSKAQQSSDWAAEILSPEQLEYAASDVLYLHRLRDVLSGRLAR 172 Query: 184 ERDLWLLDQTINDRGYR 200 + D R Sbjct: 173 DGRTKEADACFRFLPTR 189 >gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801] Length = 210 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L V L Q + Sbjct: 28 IAVDTETMGLIP----------QRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEA 77 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T++ V H + F+ + GI+ CT + ++ LK+ L Sbjct: 78 KTILKVFHYARFDVAQLRYHFGIETQP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 131 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 I + Y DV ++LI + Sbjct: 132 ---------EGIELDKTSQSSDWGNSANLSVAQL------SYAANDVRYLIPAKEKLITM 176 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L +Q N + LD + + +++ Sbjct: 177 LQREERWQLAEQCFNCIPVFVSLD-LEQYKDIFE 209 >gi|260906871|ref|ZP_05915193.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Brevibacterium linens BL2] Length = 613 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 61/472 (12%), Positives = 112/472 (23%), Gaps = 89/472 (18%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK-LQELIA---------QERKKLDEDIV 225 RL L E L+ + G D+ + L E + + + + + Sbjct: 174 RLRLLLAAESAGGLVAAEMQAAGVPWDIAEHDRILAEELGPRPARDAKPAKMLAVADQVR 233 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L L GI++ S+ L+ + L+ + S Sbjct: 234 AALGDPRANLDSHVKLLHSLHAA-GINVASTSKWELQE-----SNHAAIAPLLEYKKQSR 287 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + S+GR R G TGRW+ +PR Sbjct: 288 LLS-ANGWAWLDEWVSEGRYRPVYVPGGV-VTGRWAASGGGALQIPR------------- 332 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + A G +L+ AD+A +E R LA ++G+ +A Sbjct: 333 -----------------QLRPALRADPGWRLISADVAQLEPRALAAMSGDRAMAEAGRGR 375 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 + T + K+ L Y Sbjct: 376 DLYSGLVDEGIVATRQE---------AKIAVLGAMYGSTTG----------------DSG 410 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW--KD 523 + A + V +G + + + WR Q Sbjct: 411 RLVPRLRTSFPAAMGLVDSAAEVGAAGGVVSTWLGRSSPVPGEGWRRVQSAANQFDATPA 470 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + G + V R + +A Sbjct: 471 DENRARRAAGDQGRFTRNFVVQGTAAEWALAWLAD----LRLRLSQLPAIDDGNPGATSA 526 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + G + D +V +HDE++ Sbjct: 527 VDGDGGTTSAGETM------GHVAD----ASGPVFSRRAHLVFFLHDEVIVH 568 >gi|222147114|ref|YP_002548071.1| ribonuclease D [Agrobacterium vitis S4] gi|221734104|gb|ACM35067.1| ribonuclease D [Agrobacterium vitis S4] Length = 208 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 53/203 (26%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET + + + + + D + +L L D Sbjct: 24 IAIDTET----------LGLIPRRDRLCVVQLSPGDGTADVIRIAPGQRQAPNLTALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 T + H F+ + T G+ + CT + +R + + Sbjct: 74 PTREKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASR-LSRTYT-----DRHGLKD--- 122 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 L + A + QL EY DV L +L Sbjct: 123 ------NLKEMLDVDVSKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTARLVR 174 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 + + R LDL+ Sbjct: 175 DGRMDHATACFEFLPTRAKLDLL 197 >gi|218670593|ref|ZP_03520264.1| ribonuclease III protein [Rhizobium etli GR56] Length = 208 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 T + H F+ + T G+ + CT + +R LK+ Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIRTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + A + QL EY DV L +L Sbjct: 123 ---------NLKEMLDIDISKTQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 172 LIRDGRFDHATACFEFLPTRAKLDLL 197 >gi|27476023|ref|NP_775225.1| DNA polymerase1 [Pseudomonas phage PaP3] gi|27414453|gb|AAL85539.1| DNA polymerase1 [Pseudomonas phage PaP3] Length = 545 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 48/443 (10%), Positives = 106/443 (23%), Gaps = 111/443 (25%) Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + M+E ++ ++ + + + +R + L L E V +GRL G+ Sbjct: 190 LTTPKMTETSMDTVQGDLGKLVMQRMVWAHRRSL-------LQGLVEQVKPNGRLEGSAN 242 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A+ TGR V N+P +R Sbjct: 243 PC-ATPTGRMRHRVVV--NIP-----------------------AARSPFGPEIRGLF-- 274 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 W + + V K + Sbjct: 275 ------------QGTPNAGEWKWTVLRRDIGENERVRPHTNIVEVLKGGKWKTVGKYRVY 322 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFS---------QNVKSTSTFEDWEQAESH 481 + + + +GY G + +AS+ G + + D + + Sbjct: 323 VPENQLIFVGYDGAGLELRMLASYIGDPDYTREVVDGDVHTANQIAAGLPTRDDAKTFIY 382 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + +++ + + + +L + + + G Sbjct: 383 AFIYGAGDAKIGQIIGGTRADGARLREQFLKANPELAKLIERVKQEAERGYLVG------ 436 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 R+L + ++ K + Sbjct: 437 ---------------------LDGRKLTMRRSESGEVMVH--------------KALNTL 461 Query: 602 VQAISRDILCEGMK----NATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655 +QA ++ M + G VL +HDE E ++ M Sbjct: 462 LQAAGAIVMKWAMVILDEKVRRAGLKAWKVLDIHDEGQWECHPEDLATLRGF---METCV 518 Query: 656 SWAKGL-----PLKAEGYEAKRY 673 A + PL ++ + + Sbjct: 519 KEAGEILGCNCPLASDSIAGRSW 541 >gi|322829429|gb|EFZ32820.1| mitochondrial DNA polymerase I protein D, putative [Trypanosoma cruzi] Length = 1036 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 77/291 (26%), Gaps = 62/291 (21%) Query: 2 SKLFIDIETRSP-------QPLPK------VGVWAYAEQAVITL------CAYAWDDEPV 42 L +D+ET + P K G Y + + A +DD V Sbjct: 517 RYLVLDLETTTVRRYKRVANPFTKENYVVLSGARDYTGKVFMAGRYFSRNIALRYDDFEV 576 Query: 43 K-LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDI--PSKRWICTSV 98 D + S+ S L L D V+ V HN F+ +++ + T Sbjct: 577 TSTCDLVDGSSQHSLFLPPLDDYDVI-VGHNIKFDLLHIWRDAELRRFLSRGGKVWDTMY 635 Query: 99 LART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 G + L++ + + + Sbjct: 636 AEYLLTGHEVKLGRGAGLEDIAKSYGGQTPKL---------------DAVKEAWAKGKET 680 Query: 152 HVQAWQLFGEYCKRDVE---------ATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + + L EY D+E R L +R + D L + G + + Sbjct: 681 YEIPYALLSEYLHGDLENTELIFRKHMERALLQRQAIICTARMDGLLCTTEMEYNGLKTN 740 Query: 203 LDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLF 246 + L + + + +L + + L + F Sbjct: 741 VQLAVTQSNELMGKVVELRNHLDDAIPKEIPPDCRKYFNWSSNQHLIAFFF 791 >gi|322489593|emb|CBZ24851.1| mitochondrial DNA polymerase I protein D,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1579 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 56/405 (13%), Positives = 104/405 (25%), Gaps = 88/405 (21%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSS-DGRLRGTLQFYGASRTGR 319 SN +IL A + V S D + L + + TGR Sbjct: 1201 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSMDSCIHHELI-HNKTNTGR 1259 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--V 377 + QN+P++++S +R I+ G K + Sbjct: 1260 LASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCI 1293 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E LA +A ++ ++ N D + D + K Sbjct: 1294 EADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAK---- 1346 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 + S + Sbjct: 1347 -------------------------KNKEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTG 1381 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 L ++ + ++GV K +T + V NV + Sbjct: 1382 LTQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG--- 1434 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + VL + R V+++ L + L VQ + +I+ + M Sbjct: 1435 MFPVL-TGSRYVFTESDVPEGMLRERDAVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGV 1492 Query: 618 ----------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + TVHD + + + Y V +M Sbjct: 1493 LWRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1537 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 41/329 (12%), Positives = 87/329 (26%), Gaps = 74/329 (22%) Query: 2 SKLFIDIETRS-------PQPLPK------VGVWAYAEQAVI------TLCAYAWDDEPV 42 L +D+ET + P K G Y + A +DD V Sbjct: 466 RYLILDLETTTIRRYKRVANPFTKENYVVLSGARDYKGNVFMPRRYFDRSVAMRYDDPSV 525 Query: 43 ----KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKRWIC 95 L +++ + ++ L L + V+ V HN F+ + + + Sbjct: 526 TSQNHLVEKSSKDSL---FLPPLDEYDVI-VGHNIKFDMLHIWRDVEFRKFLRRGGKIWD 581 Query: 96 TSVLART-------NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 T G + L++ + K + Sbjct: 582 TMYGEYLLTGQEVKLGHGAGLEDVAKSYGGQT---------------MKLDAVKRAWAEG 626 Query: 149 RANHVQAWQLFGEYCKRDVEATRELF-KRLIPLSDG--------ERDLWLLDQTINDRGY 199 + + + EY D+E T +F K + + + L + G Sbjct: 627 KETYEIPYSTLTEYLHGDLENTELIFCKHMERALEQRQVIIGCARMEGLLCTTEMEYNGL 686 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVK-------LTDGIIRSSRQTYALRMYLFLITGID 252 + ++DL + + + +L + + + L + F Sbjct: 687 KTNVDLAQRQSNELMTKVSELRRHLEESIPQEIPHDCRKFFNWSSNQHLITFFF------ 740 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ T A+ + R Sbjct: 741 GGKLTLSTNARESKPLTGELFARHTLFLR 769 >gi|146081058|ref|XP_001464182.1| mitochondrial DNA polymerase I protein D [Leishmania infantum JPCM5] Length = 1073 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 101/404 (25%), Gaps = 86/404 (21%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLN------TLSEAVSSDGRLRGTLQFYGASRTGRW 320 SN +IL A + V S + + TGR Sbjct: 695 KSNHNDSTASVILELRALEKLIGTYYESTDGGTGMVSLVHSTDSCIHHELIHNKTNTGRL 754 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VV 378 + QN+P++++S +R I+ G K + Sbjct: 755 ASANPNCQNIPKEDKSS--------------------------LRDMFISRFGDKGMCIE 788 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E LA +A ++ ++ N D + D + K + Sbjct: 789 ADYSQLEVVALAVLASDEQMLEDLRNNVDFHCKRVTMMR---PDLKYTDVLQRAKKI--- 842 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL 498 + S + L Sbjct: 843 --------------------------KEPEFVKLRQQAKIFSFQRQYGAGVRMLSQSTGL 876 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 ++ + ++GV K +T + V NV + + Sbjct: 877 TQDQVRMLIEKENETYRGVEVFNKMVTLSA----NSYDASLQNGVRNVRGHQFFKG---M 929 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 VL + R V+++ L L VQ + +I+ + M Sbjct: 930 FPVL-TGSRYVFTESDVPEGMLRERDVVRKSTNFSPTHLKNYPVQGFAGEIV-QVMLGVL 987 Query: 618 ---------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + TVHD + + + Y V +M Sbjct: 988 WRHFLANNNYNGLAVLTNTVHDCVWVDCHVSVYRQVAKDVELIM 1031 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 62/245 (25%), Gaps = 47/245 (19%) Query: 63 DETVMCVAHNSLFERILFKK---TLGIDIPSKRWICTSVLART-------NGLPSSLKNA 112 DE + V HN F+ + + + T G + L++ Sbjct: 40 DEYDVIVGHNIKFDMLHIWRDVEFRKFLRRGGKIWDTMYGEYLLTGHEVKLGHGAGLEDV 99 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K + + + + + EY D+E T Sbjct: 100 AKSYGGQT---------------MKLDAVKRAWAEGKETYEIPYSILTEYLHGDLENTEL 144 Query: 173 LF-KRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +F K + + + L + G + ++DL + + + +L Sbjct: 145 IFCKHMERALEQRQVIICCARMEGLLCTTEMEYNGLKTNVDLAQRQSNELMTKVSELRRQ 204 Query: 224 IVK-------LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + + + L + F ++ T A+ Sbjct: 205 LEESIPHEIPHDCRKFFNWSSNQHLITFFF------GGKLTLSTNARESKPLTGELFARH 258 Query: 277 LILNR 281 + R Sbjct: 259 TLFLR 263 >gi|218661189|ref|ZP_03517119.1| ribonuclease III protein [Rhizobium etli IE4771] Length = 208 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 54/206 (26%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 T + H F+ + T G+ + CT + +R LK+ Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLIRTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + A + QL EY DV L +L Sbjct: 123 ---------NLKEMLDIDISKTQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 172 LIRDGRFDHATACFEFLPTRAKLDLL 197 >gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 411 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 81/281 (28%), Gaps = 57/281 (20%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 RL L E L+ + G +D+ +L E ++ +L ++ Sbjct: 171 RLQLLLAAESAASLVAAEMQHAGVPWRVDIHEQLLEDALGPRPTGMQRPEKMDRLLAELR 230 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 I + L L GI+ NI A + +L S Sbjct: 231 AKLGAIGLNPDSPQDLMRALH-RAGIETKS------ARTWELQNIKHPAIEPLLAYKKLS 283 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + DGR R G +GRW+ +P+ Sbjct: 284 RLFSANGWAWLDQWVHDGRFRPEYV-VGGVASGRWASRGGGALQIPK------------- 329 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR + A++G KL+VAD A +E RVLA +A + +A + Sbjct: 330 -----------------QVRGAVHANHGYKLIVADAAQLEPRVLAALAQDAKMAEAAQDH 372 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 + RA KV L Y Sbjct: 373 DLYAGIAAQGFGG---------DRAKAKVALLGAIYGATTG 404 >gi|213423791|ref|ZP_03356771.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 304 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 21/84 (25%), Gaps = 20/84 (23%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 D ET S + A + ++A + Sbjct: 231 FAFDTETDSLDNIA----------ANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRA 280 Query: 54 PSDLLQYLRDETVMCVAHNSLFER 77 L L DE V V N ++R Sbjct: 281 LELLKPLLEDEKVRKVGQNLKYDR 304 >gi|154250652|ref|YP_001411476.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] gi|154154602|gb|ABS61819.1| 3'-5' exonuclease [Parvibaculum lavamentivorans DS-1] Length = 203 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ +Q + + + D + + L + D Sbjct: 20 VAVDTET--------MGLHPERDQ--LCVVQLSAGDGNAHIVQLDRGTYNAPRLRALMAD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 ++ + H + F+ + ++ LG+ CT + ++ LK+ L Sbjct: 70 PAILKIFHFARFDVAMLQRYLGVVTAP--VYCTKIASKLVRTYTDRHGLKDLAREL 123 >gi|39933126|ref|NP_945402.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] gi|39652751|emb|CAE25490.1| 3'-5' exonuclease [Rhodopseudomonas palustris CGA009] Length = 204 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 23/177 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + + +L + L D Sbjct: 20 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 V+ + H + F+ KT G + + CT + +R LK+ L Sbjct: 70 PAVVKIFHFARFDLAALYKTFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + + DS L + D RE L Sbjct: 124 ----LGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDRLDTMLARENRTDL 176 >gi|159046129|ref|YP_001534923.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] gi|157913889|gb|ABV95322.1| 3'-5' exonuclease [Dinoroseobacter shibae DFL 12] Length = 203 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 50/201 (24%), Gaps = 37/201 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + D + + +L + L D Sbjct: 20 VAIDTETMGLVPARD----------RLCVVQLSSGDGDAHMVQIAQGQTEAPNLTRMLTD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKN-ACLALNFS 119 V+ + H + F+ + G + + CT + ++ LK L Sbjct: 70 PKVLKLFHYARFDVAALENAFG--VRTAPIYCTKIASKLVRTYTDRHGLKALLSEVLGVD 127 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K S T + Y DV L + L Sbjct: 128 ---------------VSKAQQSSDWGAPTLSAAQLD------YAASDVLYLHRLKEALDG 166 Query: 180 LSDGERDLWLLDQTINDRGYR 200 + E L R Sbjct: 167 MLAREGRTELAQACFEFLPTR 187 >gi|152968215|ref|YP_001363999.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216] gi|151362732|gb|ABS05735.1| DNA-directed DNA polymerase [Kineococcus radiotolerans SRS30216] Length = 592 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 80/315 (25%), Gaps = 71/315 (22%) Query: 196 DRGYRIDLDLVLKLQELI---------AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 G +D + ++ + R + D R + L Sbjct: 229 RTGLPVDRAVAERIVADAVGPRPGDAGEEARSRAVRDAPVHEHLGRVDLRNPAQVLAALR 288 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 G D+ D L+ + L+ R A + L E V +DGRLR Sbjct: 289 G-LGFDVPDTRAWRLERLREAHPG---VAALLAWRKAERLATTYGYRWLDEHVGADGRLR 344 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G A+ + NLP +R Sbjct: 345 GEWSGADAAAGRMTA--QAGLHNLP------------------------------SELRP 372 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + A G LV ADL +E RVLA ++G+ + A + + P+ Sbjct: 373 AVAAEPGHVLVRADLGQVEPRVLAAVSGDAGLVAATRDDDLYA----------PVAAALG 422 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R KV LA Y + + A + + Sbjct: 423 VDRPTAKVAVLAAMYGQTSGA----------------AGEALRRMERAYPTALGYLRAAE 466 Query: 487 DQYPEFAVKDKLIGT 501 E G Sbjct: 467 LAGLEGRDVRTYGGR 481 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 4/120 (3%) Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 G + A R + R + R + + Sbjct: 434 AAMYGQTSGAAGEALRRMERAYPTALGYLRAAELAGLEGRDVRTYGGRLVRISDLAPAEP 493 Query: 587 LMRERTYGGKLTENIVQAISRDILCE--GMKNATKNGY--DIVLTVHDEIVSETPDTPYF 642 G +VQ + ++ A G IVL +HDE++ P Sbjct: 494 GAATAARGRFARNAVVQGAAAELFKAWAAAVRAGLAGSAGRIVLCLHDELLLHVPGPDAD 553 >gi|23501034|ref|NP_697161.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161618108|ref|YP_001591995.1| hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|254705301|ref|ZP_05167129.1| hypothetical protein Bsuib36_15553 [Brucella suis bv. 3 str. 686] gi|260567236|ref|ZP_05837706.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261756011|ref|ZP_05999720.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] gi|23346898|gb|AAN29076.1| 3'-5' exonuclease family protein [Brucella suis 1330] gi|161334919|gb|ABX61224.1| Hypothetical protein BCAN_A0123 [Brucella canis ATCC 23365] gi|260156754|gb|EEW91834.1| 3'-5' exonuclease [Brucella suis bv. 4 str. 40] gi|261745764|gb|EEY33690.1| 3'-5' exonuclease [Brucella suis bv. 3 str. 686] Length = 205 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEADQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ + H F+ + G + CT + ++ Sbjct: 71 RSITKIFHFGRFDLAVLAHAFG--TMPQPVFCTKIASKL-----------------TRTY 111 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + Q EY DV L L + Sbjct: 112 TDRHGLKEICSELLDVSISKQQQSSDWAAEVLSQAQLEYAASDVLYLHRLKAVLEQRLER 171 Query: 184 ERDLWLLDQTINDRGYR 200 + + R Sbjct: 172 DGRTKQAEACFKFLPTR 188 >gi|86355756|ref|YP_467648.1| RNAse D protein [Rhizobium etli CFN 42] gi|86279858|gb|ABC88921.1| RNAse D protein [Rhizobium etli CFN 42] Length = 208 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKAAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 T + H F+ + T G+ CT + +R LK+ Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVTTNP--VFCTKIASRLCRTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + A + QL EY DV L +L Sbjct: 123 ---------NLKEMLDVDVSKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 172 LIRDGRFDHATACFAFLPTRAKLDLL 197 >gi|282899306|ref|ZP_06307275.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] gi|281195763|gb|EFA70691.1| 3'-5' exonuclease [Cylindrospermopsis raciborskii CS-505] Length = 209 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 29/211 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET P ++ + L + V + +L Q L Sbjct: 27 LAVDTETMGLLP----------QRDRLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ V H + F+ + L I + CT + ++ ++ Sbjct: 77 TDVVKVFHFARFDLATLRHNLKIHVQP--VFCTKIASKLARTYTNRHGL----------- 123 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K L+ + +D N V Y DV L ++L + Sbjct: 124 -----KELVQELEQVELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQR 178 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L + + + LDL+ + +EL Sbjct: 179 EERWQLAQECFSFLPTLVSLDLL-QFKELFE 208 >gi|119713543|gb|ABL97595.1| putative exonuclease [uncultured marine bacterium EB0_39F01] Length = 204 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 35/201 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + ID ET P+ + + ++ D + + ++ + L Sbjct: 19 IVAIDTETMGLNPMRD----------RLCVIQFSSGDGNAHIVQIEPDAPQAPNICKILL 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119 D+ + + H + F+ + K I+I CT + ++ LKN Sbjct: 69 DQNKVKLFHFARFDIAILKHHFKINISP--VYCTKIASKLVRTYTNKHGLKNLLRE---- 122 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 S + + + EY DV +L +L Sbjct: 123 ----------------MLSIEISKQQQSSDWGASELTKAQIEYAASDVLYLHKLMDKLNL 166 Query: 180 LSDGERDLWLLDQTINDRGYR 200 E + + N R Sbjct: 167 NLKRENRYEIAEACFNFLPMR 187 >gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101] Length = 207 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 34/206 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 +D ET +G+ + + L V + +L Q + Sbjct: 26 AVDTET--------MGLLPRRD--RLCLVQLCDPLGQVTAIRIHKGQQEAPNLKQLMEAN 75 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSEH 121 +++ V H + F+ + + LGI + CT + LART LK+ + L Sbjct: 76 SIVKVFHFARFDVAMLQHYLGIKVSP--IFCTKISSKLARTYTGKHGLKDLVMEL----- 128 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +D N + Y DV + ++L + Sbjct: 129 --------------EKVELDKSSQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKIL 174 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVL 207 E L Q + LDL+ Sbjct: 175 KREERWELAQQCFECLPVFVGLDLLQ 200 >gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328] gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328] Length = 207 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 51/211 (24%), Gaps = 29/211 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET P + L V +L L Sbjct: 25 LAIDTETMGLLPGRD----------RLCLVQICDPKGQVVAIRIERGQREAPNLKTLLET 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ V H + F+ + LGI++ CT + + Sbjct: 75 ANILKVFHFARFDVATLRHNLGIEVNP--VFCTKIAS----------KLARTYTGKH--- 119 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K LI +D N + Y DV +LI + Sbjct: 120 ---GLKDLIMELEGVELDKSSQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLIQMLKR 176 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E L + +++ ++ Sbjct: 177 EERWDLALDCFQCLPTIV-TLDLMQFDDIFK 206 >gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21] gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21] Length = 377 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 37/194 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L D+E S + Y E + L + E + L + Sbjct: 35 LAFDLEADS--------LHHYTE--KVCLIQVSSASEDRLIDPLAPID--VKVLAPIFAN 82 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122 + + H + ++ + GI++ T + ++ G L Sbjct: 83 PAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAAL---------- 130 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLS 181 L RF + + Q +Y +D EL+++L Sbjct: 131 --------LKKRFGVELDK---RYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAEL 179 Query: 182 DGERDLWLLDQTIN 195 + L +++ Sbjct: 180 KQKGRLAWVEEESE 193 >gi|158345168|ref|YP_001522875.1| hypothetical protein PPLKA1_gp34 [Enterobacteria phage LKA1] gi|114796464|emb|CAK25002.1| hypothetical protein [Pseudomonas phage LKA1] Length = 343 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 33/226 (14%) Query: 3 KLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWDRTEQSAMPS 55 L IDIET +G+ ++ I W +P V D ++ + Sbjct: 90 ILSIDIETSPIEGRVWGLWKQNLGLNQITKEWNILSYCAKWLGDPNVIYSDLSQAENIAD 149 Query: 56 ------DLLQYLRDETVMCVAHNSL-FERILFKKTL---GIDIP-SKRWICTSVLARTNG 104 +L + L +E + VA N F+ + G P R I T ++A+ Sbjct: 150 DSKLVAELYELL-NEADLVVAQNGKRFDLPKIQARFVMAGYKPPRPFRVIDTMLMAK--- 205 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT--RANHVQAWQLFGEY 162 F+ + + K + K A + +AW+ Y Sbjct: 206 ---------QQFGFTSNKLEWMTDKLCTTKKRKHEKFPGMELWNQCLAGNPEAWEEMRLY 256 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 DV + EL+ L P G ++ + + + + + Sbjct: 257 NIDDVISLEELYLILRPWYQGHPNVAVFNDGQEIACPKCGSHDLKR 302 >gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymerase [Pseudomonas phage phiKMV] gi|195546662|ref|YP_002117743.1| DNA directed DNA polymerase [Pseudomonas phage PT5] gi|195546724|ref|YP_002117802.1| putative exonuclease [Pseudomonas phage PT2] gi|33284801|emb|CAD44210.1| putative DNA directed DNA polymerase [Enterobacteria phage phiKMV] gi|158187623|gb|ABW23100.1| DNA directed DNA polymerase [Pseudomonas phage PT5] gi|165880733|gb|ABY70988.1| putative exonuclease [Pseudomonas phage PT2] Length = 807 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 51/449 (11%), Positives = 119/449 (26%), Gaps = 83/449 (18%) Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293 + + L L G + S LK++ + AK L+ ++ + Sbjct: 379 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 436 Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + V DG + +L A+ T R S Q LP ++ + Sbjct: 437 TYNKDGTIKDTKGMLQYVDDDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 492 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKI 399 A V+ ++ G + D +E +LA ++ + + Sbjct: 493 -----------------EAGSRVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLL 535 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 G D+++ A N + AI K + + K + Sbjct: 536 AKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPW-HGRMMQARKNI-------- 586 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A + A + Sbjct: 587 -----------------KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 629 Query: 520 LWKDLTEGFAC----VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + + + + + A + + R R P YS + Sbjct: 630 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGG--TCYSFRQQ 687 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGY----DIVL 626 + + + + T ++ Q + ++ + + G+ ++ Sbjct: 688 ERWDKEQRKTVMDFKDT---QIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLIN 744 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 VHD + ++ V + +M Sbjct: 745 NVHDAVYTDCHKDTAAEVNKGVRDIMADA 773 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 70/275 (25%), Gaps = 44/275 (16%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 M+ + +D+ET S G A I + + D D + Sbjct: 1 MTTIRILDLETESH---EHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRF 51 Query: 58 L--QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLAR 101 D + VAHN++FE F + L R CT Sbjct: 52 RSRAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEY 111 Query: 102 TNG----LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 L +L KM + D + Sbjct: 112 LLSHQTWLYPALDELAPKYGGTHKVDGIKML--WDQGVLTSEMDQDLLSEYLSGPCGDIE 169 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQE 211 Y + R ++ + + + G ++DL++ K E Sbjct: 170 NTALVFYGQLMKLQARGMWAGYLERCEALIGF----SAMECAGLKVDLEVAKVNHAKQLE 225 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 +A +L + + + Y + +L+ Sbjct: 226 EVAGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260 >gi|167600464|ref|YP_001671963.1| DNA polymerase [Pseudomonas phage LUZ19] gi|161168327|emb|CAP45491.1| DNA polymerase [Pseudomonas phage LUZ19] Length = 807 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 51/449 (11%), Positives = 119/449 (26%), Gaps = 83/449 (18%) Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293 + + L L G + S LK++ + AK L+ ++ + Sbjct: 379 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 436 Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + V DG + +L A+ T R S Q LP ++ + Sbjct: 437 TYNKDGTIKDTKGMLQYVDDDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 492 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKI 399 A V+ ++ G + D +E +LA ++ + + Sbjct: 493 -----------------EAGSRVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLL 535 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 G D+++ A N + AI K + + K + Sbjct: 536 AKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPW-HGRMMQARKNI-------- 586 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A + A + Sbjct: 587 -----------------KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 629 Query: 520 LWKDLTEGFAC----VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + + + + + A + + R R P YS + Sbjct: 630 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGG--TCYSFRQQ 687 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGY----DIVL 626 + + + + T ++ Q + ++ + + G+ ++ Sbjct: 688 ERWDKEQRKTVMDFKDT---QIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLIN 744 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 VHD + ++ V + +M Sbjct: 745 NVHDAVYTDCHKDTAAEVNKGVRDIMADA 773 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 70/273 (25%), Gaps = 40/273 (14%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58 M+ + +D+ET S + + I + + D D + Sbjct: 1 MTTIRILDLETES-YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRFRS 53 Query: 59 -QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN 103 D + VAHN++FE F + L R CT Sbjct: 54 RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113 Query: 104 G----LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 L +L KM + D + Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVDGIKML--WDQGVLTSEMDQDLLSEYLSGPCGDIENT 171 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQELI 213 Y + R ++ + + + G ++DL++ K E + Sbjct: 172 ALVFYGQLMKLQARGMWAGYLERCEALIGF----SAMECAGLKVDLEVAKVNHAKQLEEV 227 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 A +L + + + Y + +L+ Sbjct: 228 AGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260 >gi|271967935|ref|YP_003342131.1| DNA polymerase I - 3'-5' exonuclease-like protein [Streptosporangium roseum DSM 43021] gi|270511110|gb|ACZ89388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains-like protein [Streptosporangium roseum DSM 43021] Length = 531 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 47/395 (11%), Positives = 97/395 (24%), Gaps = 68/395 (17%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L + + + + + F G+ + +K + Sbjct: 194 ARLQALADQVAEAFGTPF-NPDSPQQ-IVKAFKSAGVPVASTRAHEIKKV------DHPG 245 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + ++ D R R G +GRW+ +P+ Sbjct: 246 VAPLLAYKEMARIYSFHGWVWADQWVRDHRFRPEYV-VGGVVSGRWATSGGGALQIPK-- 302 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R ++A G LVVAD A +E RVLA +AG Sbjct: 303 ----------------------------VMRQVVVADEGWTLVVADAAQLEPRVLAAMAG 334 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + +A + +R K+ L+ Y G + + + Sbjct: 335 DGGLARAAGQIDLYQALAQ----------AFGGERDSAKIAMLSAMYGGTSGDAPKLLAV 384 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-- 512 + + +A E + +G C WR Sbjct: 385 M----------------RQRFPRAYQFVEDAARSGEEGKLVRSWLGRTCPQPSAGWRELV 428 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + +D V + + + + + Sbjct: 429 SGPEGKRAARDRGRFTRNFVVQATAAEWALALMAVLRGLLPDPARLVFFQHDEVMVHCPA 488 Query: 573 VKGDCSYLNTATSQLMRER-TYGGKLTENIVQAIS 606 + + R +G +QA++ Sbjct: 489 ELAEEVVAAVGRAAEEATRLLFGPTPVRFPMQAVA 523 Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 16/157 (10%) Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 ++A Q + G S A ++ V R R + V Sbjct: 340 RAAGQIDLYQALAQAFGGERDSAKIAMLSAMYGGTSGDAPKLLAVMRQRFPRAYQFVEDA 399 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQL---------MRERTYGGKLT-ENIVQAISRDILC 611 S + ++ R G+ T +VQA + + Sbjct: 400 ARSGEEGKLVRSWLGRT-CPQPSAGWRELVSGPEGKRAARDRGRFTRNFVVQATAAEW-A 457 Query: 612 EGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSV 644 + + + +V HDE++ P V Sbjct: 458 LALMAVLRGLLPDPARLVFFQHDEVMVHCPAELAEEV 494 >gi|316934310|ref|YP_004109292.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1] gi|315602024|gb|ADU44559.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris DX-1] Length = 694 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 59/461 (12%), Positives = 116/461 (25%), Gaps = 81/461 (17%) Query: 233 RSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + +L T ++ L Sbjct: 291 FNPSSRKHIIKKLKEMGWEPQEFTESGEAKVDDDVLEGLTDTFPQASKLVEYLLLDKRLG 350 Query: 290 LKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + + V DG++ G + G + R S +P + + + Sbjct: 351 QLADGDNAWLKKVHDDGKMHGAMDTMG-TVHSRASHFSPNMGQVPAAKSPYGAECRALFG 409 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 N +T G + + V AD++G++ R LA + G Sbjct: 410 PNGIDTHTAGWGGEKEEI----------VQVGADMSGLQLRALAH------LLHPLDGGA 453 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 + T + M G + + + Sbjct: 454 YSDIVTSGDVH---------------------------WSHTQAMGLV-GPEEPRDKHSE 485 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 E + + P+ + T + K+ W L + Sbjct: 486 LHNILREKGAKTFGYSYLFGCFPPKSGRVVRDCLTTAK-------NKNPE----WGYLFD 534 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHI-VLPSSRRLVYSDVKGDCSYLNTATS 585 F + G+I R V +V + + + L + + K L+ Sbjct: 535 RFFKAMTTKGAIRIRSDKEVGTVVRKSFDERLKLGRLHAKLKACLKHYKNHLPGLD-DRL 593 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMK-----NATKNGYD------IVLTVHDEIVS 634 R + ++A ILC+ GY ++L VHDE Sbjct: 594 VPCRSEHSALNFACSSIEA----ILCKQWLCDSVSALEAKGYVWGRDFVLMLWVHDEQQI 649 Query: 635 ETPDTPYFSV-GTLCSLMTKN-PSWAKGLPLKAEGYEAKRY 673 + V TL + +PL +E + + Sbjct: 650 ACRKSIAEEVGKTLVECAKQAGVKLGFRVPLASEYKIGRNW 690 >gi|312141752|ref|YP_004009088.1| DNA polymerase i pola2 [Rhodococcus equi 103S] gi|311891091|emb|CBH50410.1| putative DNA polymerase I PolA2 [Rhodococcus equi 103S] Length = 521 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 49/351 (13%), Positives = 94/351 (26%), Gaps = 65/351 (18%) Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 +++ ++ +++ + + Q + F GI+L + +L + Sbjct: 184 DMLPVRLHQVTDEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRK----YLLREIDH 237 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 A + +L + T +A R R G +GRW+ + Sbjct: 238 P--AVEPLLRYRDLAKLHAANGWTWLDAWVRGNRFRPVYVPGGV-VSGRWASRGGGALQI 294 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P+ +R+ +IA G V+AD +E R+LA Sbjct: 295 PK------------------------------ALRTSVIADPGHTFVIADAGQLEPRILA 324 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G+ A A +D+Y A+ F RA K+ L + Y A Sbjct: 325 AMSGDPRM-TAAAGTDDLYALVAAEVFGGD--------RAKAKIAILGVLYGATAG---- 371 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 T + + A V +G AC +W Sbjct: 372 ------------EARALLTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPSDSW 419 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + ++ V Sbjct: 420 W-SNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAAPGDGELVFFQ 469 >gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomonas phage gh-1] gi|29243578|gb|AAO73157.1|AF493143_18 putative DNA polymerase [Pseudomonas phage gh-1] Length = 709 Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 79/278 (28%), Gaps = 57/278 (20%) Query: 15 PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR----DETVMCVA 70 + G+ ++ D + A D ++ L + V Sbjct: 5 DIETNGLLETVDKFHCATIQ---DWFTGQYTRF--NEATFGDYIKALEAEAAKPDGLIVF 59 Query: 71 HN-SLFERILF----KKTLG--IDIPSKRWICTSVLARTNGL------------------ 105 HN ++ ++ G ++IP K+ + T VL R Sbjct: 60 HNGIKYDIPALDKLKRQYFGKRLNIPRKKVLDTLVLVRLIHSNIRDRDAGLMRSGILPGK 119 Query: 106 ---PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 SL+ L +G+ + D Y V Q +Y Sbjct: 120 MFGSHSLEAWGYRLG-------EMKGEYKHDFMRQLEADGGVYTPGLEWAVCN-QAMEDY 171 Query: 163 CKRDVEATRELFKRLI------------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 C++DV T +L ++L+ E + G+ DL+ +L Sbjct: 172 CEQDVRVTSKLLRKLMEDSHYFVDGQAIECVRMEHAAAWTLAQMERNGFPFDLEGAERLY 231 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 +A R+ L ++K + T R + Sbjct: 232 AELAGIRQDLLTKLIKTFGSWYQPKGGTEQFRHPVSDK 269 >gi|269975269|gb|ACZ55493.1| putative DNA polymerase [Staphylococcus phage SA1] Length = 910 Score = 71.7 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 59/452 (13%), Positives = 116/452 (25%), Gaps = 58/452 (12%) Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 ER L + I + L ++E + +I Sbjct: 471 ERCGLSYVEHEGVQYIEHNW-SVKKYTDLLEPCLIRTSPKLTESSYDTIEGELGQKIAKY 529 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +++R + ++ + DGRL GA G +G + Q Sbjct: 530 YTLMHRRRTIENSKDDEKGWLNQIRPDGRLS-----AGAMVFGTSTGRMTQ--------- 575 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + + +R +G ++ D + +L G+ Sbjct: 576 ------------YGIVNVPSGAAVYGAPMREVWTCEDGTDIISVDQNSAQLVLLCNFMGD 623 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--------VSKEQRAIGKVMELALGYQGGAKV 447 + KA G++ T + K R + + A Sbjct: 624 EDFTKAVTEGKESVEFTKQEDGRYYCKHLDKYLNPETDKYLRYDAENDLYEVYTGTDAHT 683 Query: 448 FKT--MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----HHLWMQDQYPEFAVKDKLI- 499 + + D+ + + E + + + L +FA K Sbjct: 684 LNSIYFGLNKEEDIVRCRETQDEELLHEITKGRKKSKNGIYALLFGAGDEKFAKTIKASS 743 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 L K+ + + + +L L E F + + + A ++ + Sbjct: 744 TEEGALTKQTYFVRLPKIKKLLDRLEEDFKATKKALEEVFGKTSAIAKGGYIKVAGAWLW 803 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 P L Y+ + + N + RE T N Sbjct: 804 CKSPHKL-LNYTLMGSEAQVQNEGINLANRELTERKLTVLNG--------------RKPA 848 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 G V + HDE+ E P V + M Sbjct: 849 IGARWVCSYHDEVSLEVPTKDVPDVKEIIDRM 880 >gi|33322741|gb|AAQ07105.1|AF496417_1 DNA polymerase I [Lactobacillus delbrueckii subsp. lactis] Length = 101 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 355 DPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + +G + D + IE RVLA ++ + +AF G DI+ T Sbjct: 5 PTRTEEGKQIRKAFVPSSPDGY-IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHT 63 Query: 413 YAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 K F+ +D+V+ Q K + + Y Sbjct: 64 AMKIFHLSSVDEVTSLQXRRAKAVNFGIVYGISDXGLS 101 >gi|319781433|ref|YP_004140909.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167321|gb|ADV10859.1| 3'-5' exonuclease [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 206 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 46/197 (23%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ LR+ Sbjct: 22 VAIDTETLGLNP----------HRDRLCVVQISPGDGSADVIQIAPGQKKAPNLVSLLRN 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V + H F+ + G + + CT + +R Sbjct: 72 RGVTKLFHYGRFDLAVLYNAFG--VMPEPVFCTKIASRL-----------------TRTY 112 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I G S + EY DV L L Sbjct: 113 TDRHGLKDICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAR 172 Query: 184 ERDLWLLDQTINDRGYR 200 + D R Sbjct: 173 DGRTKEADACFRFLPTR 189 >gi|325672986|ref|ZP_08152680.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707] gi|325556239|gb|EGD25907.1| DNA-directed DNA polymerase [Rhodococcus equi ATCC 33707] Length = 521 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 48/351 (13%), Positives = 94/351 (26%), Gaps = 65/351 (18%) Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 +++ ++ +++ + + Q + F GI+L + +L + Sbjct: 184 DMLPVRLHQVADEVSAAFGRQVNPASQPEVVAA--FAREGIELASTRK----YLLREIDH 237 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 A + +L + T +A R R G +GRW+ + Sbjct: 238 P--AVEPLLRYRDLAKLHAANGWTWLDAWVRGNRFRPVYVPGGV-VSGRWASRGGGALQI 294 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P+ +R+ ++A G V+AD +E R+LA Sbjct: 295 PK------------------------------ALRTSVVADPGHTFVIADAGQLEPRILA 324 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++G+ A A +D+Y A+ F RA K+ L + Y A Sbjct: 325 AMSGDPRM-TAAAGTDDLYALVAAEVFGGD--------RAKAKIAILGVLYGATAG---- 371 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 T + + A V +G AC +W Sbjct: 372 ------------EARALLTLLRKRFPVAVQLVEDAARAGERGEVVHSWLGRACPPPSDSW 419 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + + ++ V Sbjct: 420 W-SNGDTHARGRFTRNFVVQATAAEWALCLLADLRRRLSAAPGDGELVFFQ 469 >gi|114327365|ref|YP_744522.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] gi|114315539|gb|ABI61599.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1] Length = 259 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 63/213 (29%), Gaps = 42/213 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSD 56 + ID ET +G+ + + + L + D L + + P + Sbjct: 70 IIAIDTET--------MGLNHHRD--RLCLIQISAGDGHAHLVQIVPERLGGKGADCP-N 118 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC 113 L + L + + + H + F+ + + LGI + CT + A+ LK+ C Sbjct: 119 LKRLLSNPGCVKLMHYARFDVGILQNALGIAM--SNVKCTKIAAKLVRTFTDRHGLKDLC 176 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + + Y DV L Sbjct: 177 RDL------------------LGVEISKQ--QQSSDWGAPELTPEQMAYAASDVLYLHAL 216 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + RL L E L L + R LD + Sbjct: 217 WNRLEGLLIREDRLALAEACFAFLPARARLDYL 249 >gi|58040278|ref|YP_192242.1| ribonuclease D [Gluconobacter oxydans 621H] gi|58002692|gb|AAW61586.1| Ribonuclease D [Gluconobacter oxydans 621H] Length = 214 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 63/216 (29%), Gaps = 44/216 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR------TEQSAMPSDL 57 + ID ET +G+ + + + L + D L P +L Sbjct: 24 VAIDTET--------MGLNPHRD--RLCLVQLSAGDGEAHLVQIKPVSMGGRGYDCP-NL 72 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACL 114 L D++V + H + F+ + + I IP ICT + A T L C Sbjct: 73 KALLTDDSVTKLMHFARFDVAVLQNAFNITIP--SVICTKIAARLVYTFTDRHGLAYLCR 130 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L E K S T Y DV L+ Sbjct: 131 DLLGVEIS--------------KHQQSSDWGAQTLTPDQL------RYAASDVLYLHALW 170 Query: 175 KRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLK 208 +L + + RDL R+DL + Sbjct: 171 DKLEAMLIRENRRDLAQACYDFLPARCRLDLMGYEE 206 >gi|282897776|ref|ZP_06305775.1| 3'-5' exonuclease [Raphidiopsis brookii D9] gi|281197455|gb|EFA72352.1| 3'-5' exonuclease [Raphidiopsis brookii D9] Length = 209 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 28/204 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D ET P ++ + L + V + +L Q L Sbjct: 27 LAVDTETMGLVP----------QRDRLCLVQLCNPEGKVTAVRIAKGQTHAPNLQQLLES 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ V H + F+ + L I + CT + ++ ++ Sbjct: 77 THVVKVFHFARFDLATLRHNLKIYVQP--VFCTKIASKLARTYTNRHGL----------- 123 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K L+ + +D N V Y DV L ++L + Sbjct: 124 -----KELVQELEQLELDKSSQSSDWGNPVSLSDAQLSYAANDVRYLLSLKQKLSQMLQR 178 Query: 184 ERDLWLLDQTINDRGYRIDLDLVL 207 E L+ + + + LDL+ Sbjct: 179 EERWQLVQECFSFLPTLVSLDLLQ 202 >gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem] gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem] Length = 377 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 37/194 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L D+E S + Y E + L + E + L + Sbjct: 35 LAFDLEADS--------LHHYTE--KVCLIQVSSTSEDRLIDPLAPID--VKVLAPIFAN 82 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122 + + H + ++ + GI++ T + ++ G L Sbjct: 83 PAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAAL---------- 130 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLS 181 L RF + + Q +Y +D EL+++L Sbjct: 131 --------LKKRFGVELDK---RYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAEL 179 Query: 182 DGERDLWLLDQTIN 195 + L +++ Sbjct: 180 KQKGRLAWVEEESE 193 >gi|228907509|ref|ZP_04071366.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus thuringiensis IBL 200] gi|228852001|gb|EEM96798.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Bacillus thuringiensis IBL 200] Length = 464 Score = 71.7 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 38/380 (10%), Positives = 96/380 (25%), Gaps = 67/380 (17%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-------------SAMPSDL 57 + G + + I + D L Sbjct: 86 YTFIDTKSTGFNPFKDS--IISITIGFMDNCFFYIPIKPFKHGLSQHISTLSLEYTMKKL 143 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLA 115 L + + + NS DI + T + A +K Sbjct: 144 SPLLE-KDTLLILSNSKQHIHALYNWCDFDITYNIFWDTEIAANLLNENHPKGVKEWYKE 202 Query: 116 LNF------SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L ++ K +I + + + + EY KR E Sbjct: 203 YVLPRLISNETILNTIDRKKYMIEKTLYDQLQHHVATYFACYDIFMLKSVFEYQKRIFEN 262 Query: 170 -TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQERKKLDEDI--- 224 L + E L + T +G +I + + +++++ + + + ++I Sbjct: 263 PKFNLGPIYKLFREIEMPLIAVLTTAERKGIKISEEFLSNDVKQILQTKFQSVKKEILNY 322 Query: 225 ----------------------VKLTDGIIRSSRQTYALRMYLF------------LITG 250 + + L L+ + Sbjct: 323 LGSTITLNNCMHPPKQQNKYKGANKLTSTLFNINSPAHLAQKLYIDNAILKPIMEYDKSC 382 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV--SSDGRLRGT 308 ++ + K+++ + + + ++ R + ++L + + D ++ Sbjct: 383 KSVISKLKTDRKTLIRNLSKHPVIPLILEYRRLVKLISS-FCDSLPKEQQGTIDNKIHPI 441 Query: 309 LQFYGASRTGRWSGCVFQPQ 328 G ++TGR S + Sbjct: 442 YNSVG-TKTGRMSCSSPNLK 460 >gi|194100330|ref|YP_002003760.1| gp5 [Enterobacteria phage EcoDS1] gi|193201325|gb|ACF15804.1| gp5 [Enterobacteria phage EcoDS1] Length = 723 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 80/297 (26%), Gaps = 65/297 (21%) Query: 7 DIETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 DIET GV AE A P+ + + Sbjct: 11 DIETNGLLDTVSQFHCGVLINAESNETLKYGVA----PMVGI-VGGFKEYVHKVEEIAAS 65 Query: 64 ETVMCVAHN-SLFERIL---FKK-TLG--IDIPSKRWICTSVLARTN-------GLPS-- 107 M V HN ++ K+ G + P + I T VL R + + Sbjct: 66 PDGMLVFHNGINYDVPAIDKLKRLYFGKRFNFPKHKMIDTLVLGRLMYPNIKFSDMGAVK 125 Query: 108 ------------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 SL+ L +G+ K + Y + Sbjct: 126 AGRLPPQMMGRQSLEAWGYRLG-------EMKGEYKHDYVAKCKAEGIEYKAGDE-WLFP 177 Query: 156 WQLFGEYCKRDVEATRELFKRLIPL----------------SDGERDLWLLDQTINDRGY 199 Q +Y +DV T LFK+ + E D + GY Sbjct: 178 SQEMLDYNVQDVVVTLALFKKFLTDKYYFQSEQFAFEQIYALRLEHDAAWTCAKMERNGY 237 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGIDLVD 255 ++ ++V L + +R +L + + S + + TG DL Sbjct: 238 PMNTEMVEGLYRELTVKRAELLDKLR----STFGSWYAPKGGKEFFRHPRTGKDLPK 290 Score = 67.0 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 58/476 (12%), Positives = 100/476 (21%), Gaps = 128/476 (26%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMS-------EGTLKSILSHSNITQLAKDLILNRLASS 285 + L L + + TL+ + Q +L+ L Sbjct: 339 FNPGSGDHLAKVLMERGWEPVDFTDTGKPVVDDETLEHVKLPDAEAQDCVELVREYLVVQ 398 Query: 286 GSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + V DGR+ G++ GA TGR + +P + Sbjct: 399 KRIGQAAEGKNAWLKLVGPDGRMHGSINPCGA-VTGRATHSSPNMAQVPANGAPYGETCR 457 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV-----LAWIAGEDW 397 + + V D +G+E R + GE Sbjct: 458 GAFGAAWNKKDGK---------------PDPWIQVGVDASGLELRCLGNRAAPFDGGEYA 502 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASH 454 K + A N DK + E R K A Y G Sbjct: 503 KTVVEGDIHWANAVNAGLAPNVKRDKSNHEHEAFRNNAKTFIYAFLYGAG---------- 552 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + + K + Sbjct: 553 ----------------------------------AAKIGLIVGGGKKEGAALMKKFIEGT 578 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + L V ++ V + +R + RR+ Sbjct: 579 PAIKDL--------REAVSNTLISDSKWVDGENIVKWKRR----WLRGLDGRRIHIRSPH 626 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIV----- 625 ++Q + + + GY I Sbjct: 627 S---------------------ALNALLQGDGAVVCKHWIVETERMLEEAGY-IHGWEGD 664 Query: 626 ----LTVHDEIVSETPDTP-YFSVGTLCSL-MTKNPSWAK-GLPLKAEGYEAKRYR 674 VHDE+ V + L M K + L EG ++ Sbjct: 665 FAYMAWVHDELQIACRTQEIAEEVVKIAQLAMRKVGEFYNFKCVLDTEGKIGPTWK 720 >gi|239980380|ref|ZP_04702904.1| DNA polymerase I [Streptomyces albus J1074] gi|291452241|ref|ZP_06591631.1| DNA polymerase I [Streptomyces albus J1074] gi|291355190|gb|EFE82092.1| DNA polymerase I [Streptomyces albus J1074] Length = 562 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 54/362 (14%), Positives = 105/362 (29%), Gaps = 76/362 (20%) Query: 155 AWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 L Y ++ + R+ L+ E L+ + G + ++ + Sbjct: 135 LADLAEVYAEQLRRHENAVHPGRMRLLTASESAGALVAAEMTAAGLPWRAETHREVLREL 194 Query: 214 A----------QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 + +L +++ +R +R F GI + L+ Sbjct: 195 LGERYGGSGEPRRLAELADEVSAAFGHRVRPELPAEVVRA--FARAGIKVTSTRRWELEK 252 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 I A +L + DGR R + G + +GRW+ Sbjct: 253 I------DHPAVAPLLAHKKLYRIWVAHGWQWLADWVRDGRFRPSY-LPGGTVSGRWATN 305 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 +P+ +R ++A G +LVVAD Sbjct: 306 GGGALQIPK------------------------------VIRRAVVADPGWRLVVADADQ 335 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E R+LA ++G+ ++ + +D+Y +AF D + K+ L Y Sbjct: 336 LEPRILAAVSGDRALMEVASRPDDLYQAVSDRAFQGDRD--------LAKLAVLGAVYGQ 387 Query: 444 GAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + K +A+ + A H E + +G Sbjct: 388 TSGDGLKNLAAL-----------------RRRFPAAVDHVDEAARAGEEGRLVRTWLGRT 430 Query: 503 CE 504 C Sbjct: 431 CP 432 >gi|86608835|ref|YP_477597.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557377|gb|ABD02334.1| 3'-5' exonuclease family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 210 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 34/207 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 L +D ET P ++ + + A V L + L Q L Sbjct: 26 YLAVDTETMGLIP----------QRDRLCVVQIANSAGEVVLLRLSRGVKQAPFLAQLLM 75 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119 ++ + H + F+ + + LGI CT + ++ LK+ L Sbjct: 76 APSIEKIFHYARFDLAMLRYHLGIRAWP--VFCTKIASKLARTYTSKHGLKDVVSEL--- 130 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 C ++ EY DV + +L Sbjct: 131 ----------------CGVELNKTAQSSDWGAVHALSAEQLEYAANDVRYLIPVRHKLAE 174 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLV 206 + E L Q ++LDL+ Sbjct: 175 MLRREERWELAQQCFQHLPTLVELDLL 201 >gi|313760827|gb|ADR79390.1| DNA polymerase [T7-like bacteriophage Eptesicus fuscus/P1/IT/USA/2009] Length = 713 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 64/259 (24%), Gaps = 68/259 (26%) Query: 7 DIETRSPQPL---PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSDLLQ 59 DIET GV A + T L Sbjct: 6 DIETDGLLDTVSQFHCGVMINAGTRETLKYG---------VIPMTGIVGGFKEYVEKLEA 56 Query: 60 YLRDETVMCVAHN-SLFERILFK----KTLG--IDIPSKRWICTSVLART---------N 103 M V HN ++ K K G ++ + + T VL+R Sbjct: 57 ISASPDGMVVFHNGINYDIPAIKILKKKYFGKNLNFNKAKMVDTLVLSRLMFANLKDKDL 116 Query: 104 GL------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 GL SL+ L + K Y Sbjct: 117 GLIRSGKLAGKFWGRHSLEAWGYRLGEMKGEYKD-------DFKAMCKEKGIEYKAGDE- 168 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLI----------------PLSDGERDLWLLDQTIN 195 + Q +Y +DV T +LF+R + E + + + Sbjct: 169 WLTPSQEMLDYNVQDVVVTLKLFERFLTDKYYFPEGETNWEAIESIKLEHEAQWVCSKME 228 Query: 196 DRGYRIDLDLVLKLQELIA 214 G+ D++ + K+ + Sbjct: 229 RNGFPTDVEALEKMYHDLQ 247 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 54/452 (11%), Positives = 97/452 (21%), Gaps = 125/452 (27%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASS 285 + L L + TL+ + + Q +L+ L Sbjct: 336 FNPNSNDHLIKVLTDRGWEPTEFTDKGNPKCDDETLEYVKLKDPVAQHCLELVRKYLVIQ 395 Query: 286 GSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + V SDGR+ G++ GA TGR + +P + + Sbjct: 396 KLIAQAAEGKQAWLKNVKSDGRVHGSINPCGA-VTGRATHSSPNMAQVPANGKLHGETCR 454 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA-----GEDW 397 + + + V D +G+E R L A GE Sbjct: 455 GAFGAHHNKKDGK---------------PDPWIQVGVDASGLELRCLGHFAAPYDGGEYA 499 Query: 398 KIKAFANGEDIYVTTYAKAFNTPI---DKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + + A N P D R K A Y G Sbjct: 500 ENVLNGDIHWTNAVNAGLAPNVPRDKEDHYHDACRNNAKTFIYAFLYGAG---------- 549 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + + K + Sbjct: 550 ----------------------------------AAKIGSIVGGHAKEGKELTKKFMEGT 575 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + L +EG + + M+ + + R++ Sbjct: 576 PAIKSL------------REGIASALVSSEKWVDGEMQVKWKRRWLKGLDGRKVHVRSPH 623 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD------- 623 ++Q+ I + + K GY Sbjct: 624 S---------------------ALNTLLQSAGALICKKWIVEVEKAMIAAGYKHGWDGDF 662 Query: 624 -IVLTVHDEIVSETPDTPYFS--VGTLCSLMT 652 + VHDE+ V +M Sbjct: 663 AYMAWVHDELQIACRTQEIAEHCVQIAQDVMR 694 >gi|296537397|ref|ZP_06899246.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] gi|296262276|gb|EFH09052.1| 3''-5'' exonuclease [Roseomonas cervicalis ATCC 49957] Length = 217 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 40/205 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSDLL 58 + ID ET +G+ + + L + D + A +L Sbjct: 29 VAIDTET--------MGLDPRRD--RLCLVQLSAGDGNAHCVQIIPESLGGRGADCPNLK 78 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA 115 L V+ + H + F+ + + LGI+ CT + A+ LK+ C Sbjct: 79 ALLTRPDVVKLFHFARFDVAILRAALGIECAP--VRCTKIAAKLVRTFTDRHGLKDLCRE 136 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + + Y DV L+ Sbjct: 137 L------------------LGVEISKQ--QQSSDWGAPELTPEQLAYAASDVLHLHALWA 176 Query: 176 RLIPLSDGERDLWLLDQTINDRGYR 200 +L L E L L + R Sbjct: 177 KLEGLLRREGRLELAESCFRFLPAR 201 >gi|319403664|emb|CBI77249.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498] Length = 206 Score = 71.3 bits (173), Expect = 5e-10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L+ L D Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVTLLED 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116 +T+ + H F+ + T G + CT + + RT LK C L Sbjct: 72 KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKLTRTYTDRHGLKEICSEL 125 >gi|88608093|ref|YP_506413.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] gi|88600262|gb|ABD45730.1| 3'-5' exonuclease family protein [Neorickettsia sennetsu str. Miyayama] Length = 206 Score = 71.3 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID E +G+ + + L + D L L L D Sbjct: 21 IAIDTE--------SMGLVNRRD--RLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLLVD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H + F+ + + LG + ++ CT + +R SLK CL Sbjct: 71 PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELCL------ 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L + + Y DV + + L + Sbjct: 123 ----DLLGVRLNK---------GKQSSDWGSTSLTREQM-SYAASDVLYLHAIKEALDVM 168 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E+ + L YR +LDL+ Sbjct: 169 LKREKRIELARACFQFLPYRAELDLL 194 >gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506] Length = 207 Score = 71.3 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 50/201 (24%), Gaps = 35/201 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET + + + + D + + ++ L D Sbjct: 20 VAIDTETLGLNTMRD----------RLCVVQLSPGDGTADVVQIAKGQTEAPNISALLAD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 + + H + F+ G CT + +R LK+ L Sbjct: 70 ASKTKIFHYARFDVAALYHAFGAMTEG--IFCTKIASRLTRTYTDRHGLKDLAREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L + + + Y DV ++ L Sbjct: 124 ------VGVDLSKQQQSSDWAVETLSPAQLD----------YAASDVLYLHDIMGALYKR 167 Query: 181 SDGERDLWLLDQTINDRGYRI 201 + E + L + R+ Sbjct: 168 LEREDRMDLARECFRFLPMRV 188 >gi|47934828|gb|AAT39852.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 71.3 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 73/237 (30%), Gaps = 51/237 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 RS G KL+ D +G+E R+LA ++ +GE + Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNEILSGEHPH 208 >gi|157866092|ref|XP_001681752.1| mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] gi|68125051|emb|CAJ02395.1| putative mitochondrial DNA polymerase I protein B [Leishmania major strain Friedlin] Length = 1429 Score = 71.3 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 45/379 (11%), Positives = 92/379 (24%), Gaps = 108/379 (28%) Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + DGR+ A+ T R QN+P+ ++S Sbjct: 1061 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1101 Query: 356 PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR ++ G K V D + +E VLA + + +G D +V Sbjct: 1102 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTNDLNSGVDFHVKRA 1153 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A P D++ + GY+ + + Sbjct: 1154 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1179 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + S P + E + ++ G+ Q + + Sbjct: 1180 RTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1239 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 G S +P+ R+ + Sbjct: 1240 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1266 Query: 594 GGKLTENIVQAISRDILCEGMK-NATKN---------GYDIVLTVHDEIVSETPDTPY-F 642 + +Q + L + M ++ ++ VHD + + Sbjct: 1267 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRKDFYDDRAFLINFVHDSVWMDCHVDVLRE 1325 Query: 643 SVGTLCSLMTKNPSWAKGL 661 V C ++ + + Sbjct: 1326 CVRDTCRILGSVHEYVPKV 1344 >gi|51473610|ref|YP_067367.1| ribonuclease D [Rickettsia typhi str. Wilmington] gi|51459922|gb|AAU03885.1| ribonuclease D [Rickettsia typhi str. Wilmington] Length = 203 Score = 71.3 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 35/204 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + L ++ + L Q +L L D Sbjct: 20 IAVDTET--------MGLNIHRD--KLCLLQFSNGNGAAHLVHFINQDYTAPNLKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T + H + F+ KK L ID+ + CT + ++ LK+ C L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Y T ++ EY +DV +L L + Sbjct: 128 IS----------------KQQQSSYWGTDNLSLEQ----KEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 E L L + R++LD Sbjct: 168 LFRENRLELAHEIFRFLPTRVNLD 191 >gi|217976351|ref|YP_002360498.1| 3'-5' exonuclease [Methylocella silvestris BL2] gi|217501727|gb|ACK49136.1| 3'-5' exonuclease [Methylocella silvestris BL2] Length = 204 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 35/184 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + L + D L +L + L D Sbjct: 20 VAIDTETMGLVPGRD----------RLCLVQLSRGDGSADLVQIAPAQTAAPNLTRLLAD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V + H + F+ + KT G + + CT + ++ LK+ L Sbjct: 70 PAVEKLFHFARFDIAVLYKTFG--VMTGPIYCTKIASKLARTYTDRHGLKDLARELL--- 124 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 I + D + Y DV L +L + Sbjct: 125 ----------GIELSKQQQSSDWGGD-------ILSEAQLAYAASDVLHLHALRTKLDAM 167 Query: 181 SDGE 184 + E Sbjct: 168 LERE 171 >gi|190571105|ref|YP_001975463.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019628|ref|ZP_03335434.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357377|emb|CAQ54811.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995050|gb|EEB55692.1| 3'-5' exonuclease [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 206 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 36/221 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 + + +D E +G+ + + L +++D L P +L + Sbjct: 19 IKSIAVDTE--------AMGLLHSRD--RLCLVQLSFNDGNAHLVQFKNDYTAP-NLRKI 67 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALN 117 L D+ + + H + F+ + L + CT + +R SLK CL L Sbjct: 68 LEDKNITKIFHFARFDVSIIHYYL--QTWALPCYCTKIASRLVRTYTDNHSLKELCLEL- 124 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + + Y DV ++ ++L Sbjct: 125 -------------------LDIKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHKIKEKL 165 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + + E L ++ RI+LD + I Sbjct: 166 DLMLERENRKELAEKCFEFLPTRIELDSMGWGSVDIFNHHM 206 >gi|300021932|ref|YP_003754543.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] gi|299523753|gb|ADJ22222.1| 3'-5' exonuclease [Hyphomicrobium denitrificans ATCC 51888] Length = 205 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 37/182 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + L + D L +S +L L D Sbjct: 23 IAIDTET--------MGLNPHRD--RLCLVQLSGGDGTAHLVKFDGKSYDAPNLKALLAD 72 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNA-CLALNFS 119 + + H + F+ + + LG+ CT + ++ LK+ L Sbjct: 73 PKSLKIFHFARFDVAVLEHYLGVVTSP--IYCTKIASKLARTYTDRHGLKDLVGEILGIE 130 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K S ++ + Y DV L RL Sbjct: 131 ---------------ISKQQQSSDWGAAELSDSQR------SYAANDVLHLHALKTRLDE 169 Query: 180 LS 181 + Sbjct: 170 ML 171 >gi|157964505|ref|YP_001499329.1| ribonuclease D [Rickettsia massiliae MTU5] gi|157844281|gb|ABV84782.1| Ribonuclease D [Rickettsia massiliae MTU5] Length = 203 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 36/197 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L ++ + L T Q +L L D Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNLKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T + H + F+ KK L ID+ + CT + ++ LK+ C L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + D+ + EY +DV +L L + Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDR 197 E + L Q I Sbjct: 168 LLKENR-YELAQDIFHF 183 >gi|16331359|ref|NP_442087.1| ribonuclease D [Synechocystis sp. PCC 6803] gi|1001530|dbj|BAA10157.1| ribonuclease D [Synechocystis sp. PCC 6803] Length = 217 Score = 70.9 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 34/203 (16%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ++ +D ET +G+ + + + L + V + +L + + Sbjct: 29 KEVAVDTET--------MGLNPHRD--RLCLVQICDPEGNVTALRIAKGQEEAPNLTRLM 78 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNF 118 D + + H + F+ K T DI + CT + + RT L Sbjct: 79 EDPGITKIFHFARFDTAQLKHTF--DIKTYPIFCTKIASKIARTYTSHHGL--------- 127 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K L+ +D N + Y DV L +L Sbjct: 128 ----------KTLVQELVGVELDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLE 177 Query: 179 PLSDGERDLWLLDQTINDRGYRI 201 + E L L + + Sbjct: 178 KMLAREDRLRLAQRCFECLPVMV 200 >gi|153007480|ref|YP_001368695.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] gi|151559368|gb|ABS12866.1| 3'-5' exonuclease [Ochrobactrum anthropi ATCC 49188] Length = 205 Score = 70.9 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 54/200 (27%), Gaps = 35/200 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120 ++ + H F+ + + G + CT + + RT LK C L Sbjct: 71 RSITKIFHFGRFDLAVLAQAFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNEL---- 124 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L K S T + EY DV L L Sbjct: 125 ----------LDVSISKQQQSSDWAAETLSAAQL------EYAASDVLYLHRLKAVLEQR 168 Query: 181 SDGERDLWLLDQTINDRGYR 200 + + + R Sbjct: 169 LERDGRAKQAEACFKFLPTR 188 >gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1] Length = 380 Score = 70.9 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 15/115 (13%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 ++ +D E G+ AY EQ I L ++ + + S L + Sbjct: 30 QIAVDTE--------SNGLHAYQEQ--ICLIQFSVPGADYLVDPLASVN--LSGLNEIFS 77 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLAL 116 + + V H + ++ + K+ G T + AR G L Sbjct: 78 NPGIEKVFHAAEYDILCLKRDFGFTF--THLFDTMIAARILGRSEVGLAALLEEH 130 >gi|319406582|emb|CBI80224.1| Ribonuclease D [Bartonella sp. 1-1C] Length = 206 Score = 70.9 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L+ L D Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQLSPGDGTADIIQIAKGQNSAPNLVTLLED 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116 +T+ + H F+ + T G + CT + + RT LK C L Sbjct: 72 KTITKIFHFGRFDLAILAHTFG--VMPDAVFCTKLASKLTRTYTDRHGLKEICSEL 125 >gi|47934740|gb|AAT39808.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934806|gb|AAT39841.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 70.9 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 49/224 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L + + + + +L +I + +I L A +++ Sbjct: 61 SRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA-AQID 117 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + DGR+ G + GA TGR + +P Sbjct: 118 SWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNMAQVP---------------------- 153 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 -SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|47934818|gb|AAT39847.1| DNA polymerase [Uncultured T7-like podovirus] Length = 198 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHGPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|163867544|ref|YP_001608743.1| hypothetical protein Btr_0277 [Bartonella tribocorum CIP 105476] gi|161017190|emb|CAK00748.1| Ribonuclease D [Bartonella tribocorum CIP 105476] Length = 206 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L++ L D Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQISPGDGTADIIQIAKGQKNAPNLVKLLED 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116 V + H F+ + T G + + CT + + RT LK C L Sbjct: 72 NAVTKIFHFGRFDLAILAHTFG--VMPEAVFCTKIASKLTRTYTDRHGLKEICNEL 125 >gi|189427219|ref|YP_001949769.1| gp5 [Salmonella phage phiSG-JL2] gi|189085872|gb|ACD75687.1| gp5 [Salmonella phage phiSG-JL2] Length = 704 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 55/472 (11%), Positives = 93/472 (19%), Gaps = 140/472 (29%) Query: 235 SRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGS 287 ++ L + + L+ + Q DLI L Sbjct: 336 PSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKR 395 Query: 288 AILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 V DG++ G + GA TGR + +P Sbjct: 396 IGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVP------------- 441 Query: 345 QALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIAGED 396 + RS I D +G+E R LA Sbjct: 442 ----------GVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF---- 487 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + F NGE + R K Y G + Sbjct: 488 --MARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI-------- 537 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + +KK + Sbjct: 538 ------------------------------------GQIVGAGKERGKELKKKFLENTPA 561 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + L + + + S + + + + I R++ Sbjct: 562 IAALREAIQQ------------SLVKSSAWIGAEQKVQWKRRWIKGLDGRKVHVRSPHA- 608 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYD--------I 624 ++Q+ I + + G Sbjct: 609 --------------------ALNTLLQSAGALICKLWIIKTEEMLIEKGLKHGWDGDFAY 648 Query: 625 VLTVHDEIVSETPDTPYFS--VGTLCSLMTKNPS-WAKGLPLKAEGYEAKRY 673 + VHDEI + T M WA L EG + Sbjct: 649 MAWVHDEIQVACRTEHIAQIVIDTAQEAMRWVGEHWAFRCRLDTEGKMGPNW 700 Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 63/243 (25%), Gaps = 66/243 (27%) Query: 67 MCVAHNS-LFERILFKK------TLGIDIPSKRWICTSVLARTNGL-------------- 105 + V HN ++ +K +P + I T VL+R Sbjct: 55 LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114 Query: 106 -------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L+ L + K + F + A V + Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDD--------FKAMLEEQGEEYVDGAEWVSFNEP 166 Query: 159 FGEYCKRDVEATRELFKRLIPLS-------------------------DGERDLWLLDQT 193 Y +DV T +L ++ + D E L Sbjct: 167 MMAYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAK 226 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGID 252 G+ + + +L +A +R +L + + + S Q + TG Sbjct: 227 QERNGFPFNTKAIEELYVELAAKRAELLQKLTE----TFGSWYQPKGGKELFKHPRTGKP 282 Query: 253 LVD 255 L Sbjct: 283 LPS 285 >gi|162456960|ref|YP_001619327.1| pseudogene [Sorangium cellulosum 'So ce 56'] gi|161167542|emb|CAN98847.1| pseudogene [Sorangium cellulosum 'So ce 56'] Length = 101 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 614 MKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKAEGYE 669 M + G +VLTVHDE+ E P + M +PL + Sbjct: 1 MVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFP--LDVPLVVDVGH 58 Query: 670 AKRY 673 + Sbjct: 59 GPTW 62 >gi|209883609|ref|YP_002287466.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] gi|209871805|gb|ACI91601.1| 3'-5' exonuclease [Oligotropha carboxidovorans OM5] Length = 204 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 52/200 (26%), Gaps = 35/200 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L + L D Sbjct: 20 VAIDTETLGLNP----------HRDRLCVVQLSNGDGTADVVQIPAGHTDAPNLKKLLAD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V + H + F+ + + G+ CT + ++ LK+ L E Sbjct: 70 PMVTKLFHFARFDIAVLEHAFGVMTQP--IYCTKIASKLVRTYTDRHGLKDLVRELLGVE 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K S + Y DV L ++L + Sbjct: 128 IS--------------KQQQSSDWGAEKLSEAQLT------YAASDVLHLHALREKLDTM 167 Query: 181 SDGERDLWLLDQTINDRGYR 200 E + L R Sbjct: 168 LARENRMDLAKSCFEFLPTR 187 >gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1] gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1] Length = 205 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 35/200 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + D + + + ++ L+D Sbjct: 20 VAIDTET--------LGLDTRRD--RLCVVQLSPGDGTADVVQIAKGQSEAPNITALLKD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 + H + F+ G+ CT + +R LK+ Sbjct: 70 PAKTKIFHYARFDVAALYHAFGVMTDG--IFCTKIASRLTRTYTDRHGLKDLARE----- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G S + Q EY DV ++ L Sbjct: 123 ---------------MVGVDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKR 167 Query: 181 SDGERDLWLLDQTINDRGYR 200 + E + L R Sbjct: 168 LEREDRMELAKACFTFLPTR 187 >gi|294813269|ref|ZP_06771912.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|326441791|ref|ZP_08216525.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces clavuligerus ATCC 27064] gi|294325868|gb|EFG07511.1| Putative DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 571 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 70/501 (13%), Positives = 130/501 (25%), Gaps = 144/501 (28%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ ++ G D+ ++ + + + +L +++ Sbjct: 158 RMRLLTAAESAGMLVAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVS 217 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R L+ F G+ L L+ I A +L Sbjct: 218 AAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELE------GIDHPAVPPLLEYKKLY 269 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + DGR R Q GA +GRW+ +P+ Sbjct: 270 RIWVAHGWGWLQDWVRDGRFRPAYQPGGA-VSGRWTTLGGGALQIPK------------- 315 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD+ +E RVLA ++ + ++ A+ Sbjct: 316 -----------------VIRRAVVADAGWRLVVADVDQMEPRVLAAVSRDPGLMEVAAHE 358 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D+Y +AF+ + K+ L Y G L+ + Sbjct: 359 DDLYTRLSDRAFSGDRE--------QAKLALLGAVY----------GQTSGDGLKNLAAL 400 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 R + + Sbjct: 401 ---------------------------------------------RRRFPAAVAY----V 411 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + A +EG + PR V R + I + + T Sbjct: 412 DEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGY 471 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK----------------NGYDIVLTVH 629 R G +VQ ++V H Sbjct: 472 ASSDARARGRFTRNFVVQGS------------AADWALLLLAAVRQALVGMRAELVFFQH 519 Query: 630 DEIVSETPDTPYFSVGTLCSL 650 DE++ P +V Sbjct: 520 DEVIVHCPADEADAVVEAVRQ 540 >gi|254388656|ref|ZP_05003889.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197702376|gb|EDY48188.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 562 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 70/501 (13%), Positives = 130/501 (25%), Gaps = 144/501 (28%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ ++ G D+ ++ + + + +L +++ Sbjct: 149 RMRLLTAAESAGMLVAAEMHRAGLPWRADVHRQVLDGLLGERYAGGGEPRRLAELADEVS 208 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R L+ F G+ L L+ I A +L Sbjct: 209 AAFGRRVRPELSADVLKA--FARAGVRLRSTRRWELE------GIDHPAVPPLLEYKKLY 260 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + DGR R Q GA +GRW+ +P+ Sbjct: 261 RIWVAHGWGWLQDWVRDGRFRPAYQPGGA-VSGRWTTLGGGALQIPK------------- 306 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD+ +E RVLA ++ + ++ A+ Sbjct: 307 -----------------VIRRAVVADAGWRLVVADVDQMEPRVLAAVSRDPGLMEVAAHE 349 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D+Y +AF+ + K+ L Y G L+ + Sbjct: 350 DDLYTRLSDRAFSGDRE--------QAKLALLGAVY----------GQTSGDGLKNLAAL 391 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 R + + Sbjct: 392 ---------------------------------------------RRRFPAAVAY----V 402 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + A +EG + PR V R + I + + T Sbjct: 403 DEAARAGEEGRLVRTWLGRTSPRAVGRDGDDEAGIPQEAPDPAGDPAAGAGPATGFTPGY 462 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATK----------------NGYDIVLTVH 629 R G +VQ ++V H Sbjct: 463 ASSDARARGRFTRNFVVQGS------------AADWALLLLAAVRQALVGMRAELVFFQH 510 Query: 630 DEIVSETPDTPYFSVGTLCSL 650 DE++ P +V Sbjct: 511 DEVIVHCPADEADAVVEAVRQ 531 >gi|254796888|ref|YP_003081725.1| ribonuclease D [Neorickettsia risticii str. Illinois] gi|254590124|gb|ACT69486.1| ribonuclease D [Neorickettsia risticii str. Illinois] Length = 216 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D E +G+ + + L + D L L + D Sbjct: 31 IAVDTE--------SMGLVNRRD--RLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLIVD 80 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H + F+ + + LG + ++ CT + +R SLK C Sbjct: 81 PAVIKIFHFARFDIAILRHYLG--VLTENCYCTKIASRLVRTYTDHHSLKELC------- 131 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L + + Y DV + + L + Sbjct: 132 ---SDLLGVRLNK----------GKQSSDWGSASLTREQMSYAASDVLYLHAIKEALDVM 178 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E+ + L YR +LDL+ Sbjct: 179 LKREKRIELAQACFQFLPYRAELDLL 204 >gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T] Length = 62 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 MK NGY +V+ HDE+++E P+ + SV + +LMT+ W P++A G++ RY Sbjct: 1 MKKCENNGYPVVMHTHDELIAEVPED-FGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59 Query: 674 RK 675 +K Sbjct: 60 QK 61 >gi|116249870|ref|YP_765708.1| ribonuclease [Rhizobium leguminosarum bv. viciae 3841] gi|115254518|emb|CAK05592.1| putative ribonuclease [Rhizobium leguminosarum bv. viciae 3841] Length = 208 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADIIRIAAGQKEAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 T + H F+ + T + + CT + +R Sbjct: 74 PTHQKIFHYGRFDIAVLFHTF--SVTTTPVFCTKIASRLI-----------------RTY 114 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G + S + + EY DV L +L Sbjct: 115 TDRHGLKDNLKEMLDVDVSKAQQSSDWAAERLSPAQLEYAASDVLYLHALRDKLTERLIR 174 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 175 DGRYDHATACFEFLPTRAKLDLL 197 >gi|47934780|gb|AAT39828.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|71657888|ref|XP_817452.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70882645|gb|EAN95601.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1417 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 38/329 (11%), Positives = 81/329 (24%), Gaps = 106/329 (32%) Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADLAGI 384 QN+P+ ++S +R ++ G+K V D + + Sbjct: 1100 CQNIPKDDKSP--------------------------IRRLFVSRFGEKGRCVELDYSQL 1133 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E VLA + G+ + G D ++ + P D++ K GY+ G Sbjct: 1134 EIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYK-------------GYKRG 1180 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + + S P + E Sbjct: 1181 IPEYVQL---------------------RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1219 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + ++ G++Q + + G + LP+ Sbjct: 1220 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFV------------------VELPT 1261 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--------- 615 R+ + + + +Q + L + M Sbjct: 1262 GIRMSF---------------KTRDVVLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVR 1305 Query: 616 -NATKNGYDIVLTVHDEIVSETPDTPYFS 643 + +V VHD + + Sbjct: 1306 RDFYGQKAFMVNFVHDSLWLDCHLDVLEE 1334 >gi|71414478|ref|XP_809340.1| mitochondrial DNA polymerase I protein B [Trypanosoma cruzi strain CL Brener] gi|70873706|gb|EAN87489.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1473 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 38/329 (11%), Positives = 81/329 (24%), Gaps = 106/329 (32%) Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADLAGI 384 QN+P+ ++S +R ++ G+K V D + + Sbjct: 1156 CQNIPKDDKSP--------------------------IRRLFVSRFGEKGRCVELDYSQL 1189 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E VLA + G+ + G D ++ + P D++ K GY+ G Sbjct: 1190 EIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYK-------------GYKRG 1236 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + + S P + E Sbjct: 1237 IPEYVQL---------------------RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1275 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + ++ G++Q + + G + LP+ Sbjct: 1276 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFV------------------VELPT 1317 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--------- 615 R+ + + + +Q + L + M Sbjct: 1318 GIRMSF---------------KTRDVVLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVR 1361 Query: 616 -NATKNGYDIVLTVHDEIVSETPDTPYFS 643 + +V VHD + + Sbjct: 1362 RDFYGQKAFMVNFVHDSLWLDCHLDVLEE 1390 >gi|157828459|ref|YP_001494701.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933177|ref|YP_001649966.1| ribonuclease D [Rickettsia rickettsii str. Iowa] gi|157800940|gb|ABV76193.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908264|gb|ABY72560.1| ribonuclease D [Rickettsia rickettsii str. Iowa] Length = 203 Score = 70.5 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 36/197 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L ++ + L T Q ++ L D Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T + H + F+ KK L ID+ + CT + ++ LK+ C L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + D+ + EY +DV +L L + Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDR 197 E + L Q I Sbjct: 168 LLKENR-YELAQDIFRF 183 >gi|239830972|ref|ZP_04679301.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] gi|239823239|gb|EEQ94807.1| 3'-5' exonuclease [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 54/200 (27%), Gaps = 35/200 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L+D Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQISPGDGTADVIQIEAGQKKAPNLVKLLKD 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120 ++ + H F+ + T G + CT + + RT LK C L Sbjct: 71 RSITKIFHFGRFDLAVLAHTFG--TMPQPVFCTKIASKLTRTYTDRHGLKELCNEL---- 124 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L K S T + EY DV L L Sbjct: 125 ----------LDVSISKQQQSSDWAAETLSAAQL------EYAASDVLYLHRLKAVLEQR 168 Query: 181 SDGERDLWLLDQTINDRGYR 200 + + + R Sbjct: 169 LERDGRAKQAEACFKFLPTR 188 >gi|213420856|ref|ZP_03353922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 72 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 9/70 (12%) Query: 611 CEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663 M +++ VHDE+V E +V + LM +PL Sbjct: 1 KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPL 58 Query: 664 KAEGYEAKRY 673 E + + Sbjct: 59 LVEVGSGENW 68 >gi|47934614|gb|AAT39745.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934636|gb|AAT39756.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934640|gb|AAT39758.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934764|gb|AAT39820.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934772|gb|AAT39824.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934774|gb|AAT39825.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934778|gb|AAT39827.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934810|gb|AAT39843.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934832|gb|AAT39854.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|15892510|ref|NP_360224.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|34580497|ref|ZP_00141977.1| ribonuclease D [Rickettsia sibirica 246] gi|229586700|ref|YP_002845201.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238650888|ref|YP_002916744.1| ribonuclease D [Rickettsia peacockii str. Rustic] gi|15619670|gb|AAL03125.1| ribonuclease D [Rickettsia conorii str. Malish 7] gi|28261882|gb|EAA25386.1| ribonuclease D [Rickettsia sibirica 246] gi|228021750|gb|ACP53458.1| Ribonuclease D [Rickettsia africae ESF-5] gi|238624986|gb|ACR47692.1| ribonuclease D [Rickettsia peacockii str. Rustic] Length = 203 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 36/197 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +G+ + + + L ++ + L T Q ++ L D Sbjct: 20 LAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFTNQDYTAPNVKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T + H + F+ KK L ID+ + CT + ++ LK+ C L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLNIN 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + D+ + EY +DV +L L + Sbjct: 128 IS--------KQQQSSYWGADNLSSEQ------------KEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDR 197 E + L Q I Sbjct: 168 LLKENR-YELAQDIFRF 183 >gi|163794941|ref|ZP_02188910.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199] gi|159179760|gb|EDP64287.1| hypothetical protein BAL199_08698 [alpha proteobacterium BAL199] Length = 203 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +P+ + + ++ D L +L + L D Sbjct: 20 VAIDSETMGLRPIRD----------RLCVVQFSSGDGTAHLVQFAPGEYDAPNLTRMLTD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 V+ + H + F+ + + LG + + CT + ++ LK+ C L Sbjct: 70 PDVLKLFHFARFDVAVLQAFLG--VATAPIYCTKIASKLVRTYTDRHGLKDLCREL 123 >gi|47934782|gb|AAT39829.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934784|gb|AAT39830.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934796|gb|AAT39836.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934804|gb|AAT39840.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934820|gb|AAT39848.1| DNA polymerase [Uncultured T7-like podovirus] Length = 198 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|47934626|gb|AAT39751.1| DNA polymerase [Uncultured T7-like podovirus] Length = 200 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|88856344|ref|ZP_01131003.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814428|gb|EAR24291.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 523 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 106/333 (31%), Gaps = 52/333 (15%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-------FLITG 250 G+ ID++L+ + + R ++ + A+ +L G Sbjct: 158 GHPIDVELLNRELAMADAHRVAAIAELGIDLTDSATARGS-KAIHAWLAPVGVFLVDAKG 216 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + SI K R +S + KL + A++ +GR TL Sbjct: 217 APSLSRDLYDRVSIPETDEAQSRWKKFREVRSVASR--VGKLREIQRALN-NGRTHSTL- 272 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + +RTGR + QN+ R +R ++A Sbjct: 273 YVRRARTGRGAVTGPALQNIHRG------------------------------LRPLLMA 302 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK----VSK 426 G+ LV D + +E RV A ++ + + A +G+ + + D + Sbjct: 303 PVGEVLVSLDFSQMEPRVSAGLSQDPDLLAALESGDLYAE-LSRRIWGAEADDADGKPNP 361 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R K + L + Y G L ++ V S + + +++ LW+Q Sbjct: 362 LLRDRAKTLMLGIFYGEGKNAL-----GRALGIEPKDAKVLLDSVWAAFPGLQAYDLWLQ 416 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + G L K+ A +Q Sbjct: 417 SEVRAGRPAFTQDGRPVPLPKRGLHAALNNRVQ 449 >gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18] gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18] Length = 377 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 37/194 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L D+E S + Y E + L + + E + L + Sbjct: 35 LAFDLEADS--------LHHYTE--KVCLIQVSSESENRLIDPLAPID--VRVLAPIFAN 82 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHL 122 + + H + ++ + GI++ T + ++ G L Sbjct: 83 PAIKKIFHGADYDMRSLYRDFGIEV--VNLFDTMIASQFLGESEFGLAAL---------- 130 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLS 181 L RF + + Q EY +D EL+++L Sbjct: 131 --------LKKRFGVELDK---RYQKADWSKRPFSQEMLEYAMKDTSLLIELYRQLEAEL 179 Query: 182 DGERDLWLLDQTIN 195 + L +++ Sbjct: 180 LAKGRLAWVEEESE 193 >gi|47934768|gb|AAT39822.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301] gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942] gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301] gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942] Length = 211 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 53/211 (25%), Gaps = 29/211 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID E +G+ + + + L + + +L D Sbjct: 29 IAIDTE--------AMGLNFHRD--RLCLVQLCDSAGITTCVRIAQGQTVAPNLQALCED 78 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + V H + F+ K LGI + CT + ++ S Sbjct: 79 PQITKVFHFARFDITALKHGLGIAVQP--IFCTKIASK-LARTYS-----SQHGL----- 125 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K+L+ +D N Y DV +L + Sbjct: 126 -----KSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQR 180 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E W L Q + + + Sbjct: 181 EGR-WQLAQDCFACLPTFAALDLAQFGSVFE 210 >gi|182677567|ref|YP_001831713.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039] gi|182633450|gb|ACB94224.1| 3'-5' exonuclease [Beijerinckia indica subsp. indica ATCC 9039] Length = 204 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 37/212 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET +G+ + + + L + D L L + L Sbjct: 18 RSVAVDTET--------LGLLPHRD--RLCLVQLSGGDGQAHLVQIKPGQTHAPHLERLL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNF 118 D V + H + F+ + KT G + CT + + RT LK+ L Sbjct: 68 IDPNVTKLFHYARFDIAVLYKTFG--TMTTPLYCTKIASKLTRTYTDRHGLKDLAREL-- 123 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L K S T ++ Y DV L +L Sbjct: 124 ------------LGVDLSKQQQSSDWGADTLSDAQLT------YAASDVLHLHALRTKLD 165 Query: 179 PLSDGER--DLWLLDQTINDRGYRIDLDLVLK 208 + + E +L ++DL + Sbjct: 166 GMLEREHRTELAQACFDFLPTRAKLDLAGWAE 197 >gi|227824096|ref|YP_002828069.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234] gi|227343098|gb|ACP27316.1| 3'-5' exonuclease [Sinorhizobium fredii NGR234] Length = 208 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 56/206 (27%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L++ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVRMLAD 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 + H F+ + T G+ S CT + +R LK+ Sbjct: 74 PARQKIFHFGRFDIAVLFHTFGVT--STPVFCTKIASRLTRTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L A+ + QL EY DV L +L Sbjct: 123 ---------NLKELLDVDISKQQQSSDWAADILSPAQL--EYAASDVLHLHALRDKLTAR 171 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + + D R LDL+ Sbjct: 172 LIRDGRMEHADACFAFLPTRAKLDLL 197 >gi|269956874|ref|YP_003326663.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894] gi|269305555|gb|ACZ31105.1| DNA-directed DNA polymerase [Xylanimonas cellulosilytica DSM 15894] Length = 546 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 73/516 (14%), Positives = 122/516 (23%), Gaps = 118/516 (22%) Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 D + + +A RL L E L+ ++ G Sbjct: 104 DLDDASPGPYDGLDPAAELRAQEAAVADA--RDPGRLRFLLAAESAGALVAAELHHTGLP 161 Query: 201 IDLDLVLKLQEL-------IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT---G 250 D+ + Q +L+ V++ + + L G Sbjct: 162 WRADVHDAILTQRLGPRPPFGQRPARLEALAVRIRELLDAPPTLNPDSHPSLLKALQYAG 221 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 I + +S+ L + + ++ S + DGR R Sbjct: 222 IGVRSLSQWELMEV------QHPVVEPLMEYKKLSRLLTANGWNWLDTWVRDGRFRSEYV 275 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 G TGRWS LP+ VR ++A Sbjct: 276 -VGGVVTGRWSSVGGGALQLPK------------------------------EVRRAVVA 304 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G LVVAD+A +E RVLA ++ +D A + + + R Sbjct: 305 DPGWTLVVADVAQLEPRVLAAMSRDDAMAAAGRG---------GDMYAGIVASGAVATRD 355 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 + KV L Y G + + +A + Sbjct: 356 LAKVGMLGAMYGGTTGASAQVLPSL----------------ARTFPRAIALVEDAARAGE 399 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 V +G W G + + +V Sbjct: 400 RGEVVSTWLGRGSPRPGADWERAQAGAYD--------ADDGARARSYTRSFGRFTRNFVV 451 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 L S+RR +++ L T G Sbjct: 452 QGTAAEWALAWLASARRRLWA---------------LGEHGTGDGVFANRP--------- 487 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 + +HDE+V TP V Sbjct: 488 ------------HLAFFLHDEVVVHTPAAMADDVAR 511 >gi|145595499|ref|YP_001159796.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440] gi|145304836|gb|ABP55418.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440] Length = 592 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 66/259 (25%), Gaps = 62/259 (23%) Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 F G+++ + L+ + A L+L EA DGR Sbjct: 263 FARAGVEVPNTRSWVLRGV------DHPAAPLVLEYKELYRIWTAHGWAWQEAWVRDGRF 316 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 R G +GRW+ +P+ +R Sbjct: 317 RPEYVPAGV-VSGRWATRGGGALQIPK------------------------------VIR 345 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 ++A G VVAD +E R+LA ++G+ A G+ Sbjct: 346 RAVVADPGWTFVVADAGQLEPRILAAVSGDTRLAAAARAGDLYAALADDAFGG------- 398 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 RA KV L Y S ++ A + Sbjct: 399 --DRARAKVALLGAMYGQTGG----------------SAAPALEVLRRNYPAAFGYVETA 440 Query: 486 QDQYPEFAVKDKLIGTACE 504 + +G C Sbjct: 441 ARSGEAGELVRSWLGRTCP 459 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 20/215 (9%), Positives = 45/215 (20%), Gaps = 41/215 (19%) Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 A + + + ++ + + + G + Sbjct: 359 ADAGQLEPRILAAVSGDTRLAAAARAGDLYAALADDAFGGDRARAKVALLGAMYGQTGGS 418 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + R + E A + G + + P + R D + Sbjct: 419 AAPALEVLRRNYPAAFGY----VETAARSGEAGELVRSWLGRTCPPGSVDRVGED---TV 471 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC--EGMKNATKN 620 P+ R R G ++QA + + Sbjct: 472 PAG----------------GEEGPSARARARGRFTRNFVIQATAAEWAATLLATLRGELA 515 Query: 621 G----------------YDIVLTVHDEIVSETPDT 639 G ++V HDE++ Sbjct: 516 GSDAELVGSDVGLAGSDAELVFFQHDEVIVHCRTE 550 >gi|47934792|gb|AAT39834.1| DNA polymerase [Uncultured T7-like podovirus] gi|47934822|gb|AAT39849.1| DNA polymerase [Uncultured T7-like podovirus] Length = 198 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 EQNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|121602332|ref|YP_989471.1| 3'-5' exonuclease domain-containing protein [Bartonella bacilliformis KC583] gi|120614509|gb|ABM45110.1| 3'-5' exonuclease domain protein [Bartonella bacilliformis KC583] Length = 206 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L++ L D Sbjct: 22 VAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADIIQIAKGQNSAPNLVKLLAD 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116 + + + H F+ + T GI CT + + RT LK C L Sbjct: 72 KAITKIFHFGRFDLAILAHTFGI--MPDAVFCTKIASKLTRTYTDRHGLKEICSEL 125 >gi|9634020|ref|NP_052094.1| 5B protein [Yersinia phage phiYeO3-12] gi|6599011|emb|CAB63615.1| 5B protein [Yersinia phage phiYeO3-12] Length = 384 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 56/253 (22%), Gaps = 51/253 (20%) Query: 235 SRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGS 287 ++ L + + L+ + Q DLI L Sbjct: 16 PSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKR 75 Query: 288 AILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 V DG++ G + GA TGR + +P Sbjct: 76 IGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVP------------- 121 Query: 345 QALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIAGED 396 + RS I D +G+E R LA Sbjct: 122 ----------GVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF---- 167 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + F NGE + R K Y G + G Sbjct: 168 --MARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI---GQIVG 222 Query: 457 LDLQQFSQNVKST 469 ++ + K Sbjct: 223 AGKERGKELKKKF 235 >gi|47934766|gb|AAT39821.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|307151178|ref|YP_003886562.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] gi|306981406|gb|ADN13287.1| 3'-5' exonuclease [Cyanothece sp. PCC 7822] Length = 209 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 34/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + L V + L Q + + Sbjct: 27 IAVDTET--------MGLIPHRD--RLCLVQLCDPTGYVTAIRIAKGQKEAPKLKQLMEN 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + V H + F+ + LGI+ + CT + ++ LK+ L Sbjct: 77 NHSIKVFHFARFDVAQLRHHLGIE--TTPIFCTKIASKLARTYTSSHGLKSL--VLELEG 132 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +D N + Y DV L ++LI + Sbjct: 133 I-----------------ELDKTAQSSDWGNAANLSEEQLSYAANDVRYLLGLKQKLITM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E L + LDL+ Sbjct: 176 LQREDRWQLAQDCFQCLPVIVSLDLL 201 >gi|225626345|ref|YP_002727841.1| DNA polymerase A [Pseudomonas phage phikF77] gi|225594854|emb|CAX63139.1| DNA polymerase A [Pseudomonas phage phikF77] Length = 808 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 51/449 (11%), Positives = 119/449 (26%), Gaps = 83/449 (18%) Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293 + + L L G + S LK++ + AK L+ ++ + Sbjct: 380 LGKRPEFQCALTLADGSPVFSTSGDALKALEKQ--GFEAAKLLMRLAELHKDNSSFYITH 437 Query: 294 ------------TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + V DG + +L A+ T R S Q LP ++ + Sbjct: 438 TYNKDGTIKDTKGMLQYVDDDGIIHHSLN-TTATATTRLSSSRPNLQQLPSKDEDDP--- 493 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKI 399 A V+ ++ G + D +E +LA ++ + + Sbjct: 494 -----------------EAGSRVKEMFVSRFGADGMIGETDYTALEVVMLAALSKDRNLL 536 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 G D+++ A N + AI K + + K + Sbjct: 537 AKLMAGTDMHLYRLAGKHNNWNGFDYDQLVAIKKDPNHPW-HGRMMQARKNI-------- 587 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A + A + Sbjct: 588 -----------------KPKAFSAQYGASAAGIAFNTGCTVEEAQEFLDNEAALFPESIA 630 Query: 520 LWKDLTEGFAC----VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 + + + + + + A + + R R P YS + Sbjct: 631 FRQIVRDSAEATSLVMYKAEDQMPAGAFSEMGPDGNWRQYRRGFWQAPGG--TCYSFRQQ 688 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-----TKNGY----DIVL 626 + + + + T ++ Q + ++ + + G+ ++ Sbjct: 689 ERWDKEQRKTVMDFKDT---QIANYWNQGEAGFMMTVSVGRIFRWMLHRPGFMVTEFLIN 745 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 VHD + ++ V + +M Sbjct: 746 NVHDAVYTDCHKDTAAEVNNGVRDIMADA 774 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 70/273 (25%), Gaps = 40/273 (14%) Query: 1 MSKL-FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58 M+ + +D+ET S + + I + + D D + Sbjct: 1 MTTIRILDLETES-YEHKGRKASPFDPRNYIVMAGWRDD------VDGKVGQKVEHRFRS 53 Query: 59 -QYLRDET---------VMCVAHNSLFERILF-----KKTLGIDIPSKRWICTSVLARTN 103 D + VAHN++FE F + L R CT Sbjct: 54 RAEAEDPNNRWFNLDGVDVIVAHNAMFESNWFFTRYRDEYLAFLRRGGRVWCTQQAEYLL 113 Query: 104 G----LPSSLKNACLALN--FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 L +L KM + D + Sbjct: 114 SHQTWLYPALDELAPKYGGTHKVDGIKML--WDQGVLTSEMDQDLLSEYLSGPCGDIENT 171 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL----KLQELI 213 Y + R ++ + + + G ++DL++ K E + Sbjct: 172 ALVFYGQLMKLQARGMWAGYLERCEALIGF----SAMECAGLKVDLEVAKVNHAKQLEEV 227 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 A +L + + + Y + +L+ Sbjct: 228 AGIEAELKKLMPDFPEYFEFKYTSLYHMSAWLY 260 >gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142] gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142] Length = 214 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 28/203 (13%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + ID ET P ++ + L V + +L Q L Sbjct: 30 KAIAIDTETMGLIP----------QRDRLCLVQLCDPSGYVTAIRIEKGQQTAENLKQLL 79 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 ++ ++ + H + F+ FK I+ CT V + S Sbjct: 80 ENQNIIKIFHYARFDVAQFKYNFAIETEP--IFCTKVAS----------KLARTYTGSH- 126 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 KAL+ +D N + Y DV L ++LI + Sbjct: 127 -----GLKALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITML 181 Query: 182 DGERDLWLLDQTINDRGYRIDLD 204 E L + + ++LD Sbjct: 182 QREERWELAQKCMKVIPLFVELD 204 >gi|281416299|ref|YP_003347539.1| DNA polymerase [Klebsiella phage KP32] gi|262410418|gb|ACY66683.1| DNA polymerase [Klebsiella phage KP32] Length = 704 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 62/263 (23%), Gaps = 51/263 (19%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDL---VDMSEGTLKSILSHSNITQLAK----DL 277 + ++ + + + L I + +L H + K DL Sbjct: 326 YTPVEHVVFNPSSRDHIALKLKEAGWIPTEFTDKGAPKVDDEVLEHVRVDDPEKQRCIDL 385 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V DG++ G++ GA TGR + +P Sbjct: 386 IKEYLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVP--- 441 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS---NG-----KKLVVADLAGIEA 386 + R+ A +G D +G+E Sbjct: 442 --------------------GVRSPYGEPCRAAFGAEHHLDGLTGLPWVQAGIDASGLEL 481 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + + G V R K Y G + Sbjct: 482 RCLAHF------MSKYDGGAYADVILNGDIHTVNQQAAELPTRDNAKTFIYGFLYGAGDE 535 Query: 447 VFKTMASHCGLDLQQFSQNVKST 469 G ++ + K Sbjct: 536 KI---GQIVGAGKERGKELKKKF 555 Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 66/254 (25%), Gaps = 67/254 (26%) Query: 58 LQYLRDE---TVMCVAHNS-LFERILFKKTLG------IDIPSKRWICTSVLARTNGL-- 105 L L E + V HN ++ + K +P + + T VL+R Sbjct: 43 LDALEAEVARGGLIVFHNGHKYDAPVLTKLAKLQLNREFHLPRENVVDTLVLSRLLFANI 102 Query: 106 -------------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 +L+ L + K + K L + Sbjct: 103 KDSDMALLRSGKLPGKRFGSHALEAWGYRLGEMKGEYKDDFKKLL--------EEQGEDY 154 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI-------------------------PLS 181 A + + +Y +DV T+ L ++L+ Sbjct: 155 VEGAEWISFNEPMMDYNVQDVVVTKALLEKLLSDKHYFPAGIDFTDVGATTFWSESCEAV 214 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E L G+ + + +L +A R +L + + + T Sbjct: 215 WLEHRAAWLLAKQERNGFPFNTKAIEELYVELAGRRSELLQTLTDTFGTWYQPKGGTELF 274 Query: 242 RMYLFLITGIDLVD 255 L TG L Sbjct: 275 ---LHPRTGKPLGK 285 >gi|322829565|gb|EFZ32905.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma cruzi] Length = 1404 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 38/329 (11%), Positives = 81/329 (24%), Gaps = 106/329 (32%) Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL--VVADLAGI 384 QN+P+ ++S +R ++ G+K V D + + Sbjct: 1087 CQNIPKDDKSP--------------------------IRRLFVSRFGEKGRCVELDYSQL 1120 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E VLA + G+ + G D ++ + P D++ K GY+ G Sbjct: 1121 EIVVLALLCGDPRLVSDLNRGVDFHIKRASFFSGLPYDEIYK-------------GYKRG 1167 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + + S P + E Sbjct: 1168 IPEYVQL---------------------RRTAKTFSFQRLYGAGVPLLHKTTGIPVEDLE 1206 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + ++ G++Q + + G + LP+ Sbjct: 1207 ASIRKEEEEYPGIMQFHRLVRTVALRAENPGLPTHFV------------------VELPT 1248 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMK--------- 615 R+ + + + +Q + L + M Sbjct: 1249 GIRISF---------------KTRDVVLNLPPVKNYPIQGFGAE-LAQMMVGRVFRHFVR 1292 Query: 616 -NATKNGYDIVLTVHDEIVSETPDTPYFS 643 + +V VHD + + Sbjct: 1293 RDFYGQKAFMVNFVHDSLWLDCHLDVLEE 1321 >gi|197935875|ref|YP_002213711.1| hypothetical protein RSB1_gp22 [Ralstonia phage RSB1] gi|197927038|dbj|BAG70380.1| hypothetical protein [Ralstonia phage RSB1] Length = 264 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 36/201 (17%) Query: 2 SKLFIDIET-------RSPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTE---- 49 L IDIET V + + I W + V D Sbjct: 5 KILTIDIETSPIGAHVWRLFD-ENVALNQITAEWTILSFCAKWLGSDEVIYEDTFNQRNK 63 Query: 50 --QSAMPSDLLQYLRDETVMCVAHNS-LFER-ILFKKTLGIDI---PSKRWICTSVLART 102 + + + L DE + + N F+R + + + + R + T ++AR Sbjct: 64 RDDKRIVKRIHKLL-DEADIVIGQNVQKFDRRKINARFIMNGLTPPSPYRVVDTMLMAR- 121 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---HVQAWQLF 159 F+ + + K P ++ A + +A + Sbjct: 122 -----------KTFGFTSNKLEWLSEKLCTQYKKLKHKKFPGFELWAAFLAGNPEAQEEM 170 Query: 160 GEYCKRDVEATRELFKRLIPL 180 EY DV +T EL+ +L P Sbjct: 171 REYNIVDVRSTEELYLKLRPW 191 >gi|90421943|ref|YP_530313.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] gi|90103957|gb|ABD85994.1| 3'-5' exonuclease [Rhodopseudomonas palustris BisB18] Length = 204 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 50/178 (28%), Gaps = 25/178 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L + L D Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSNGDGSADVVQIPVGHSDAPNLKKLLGD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNAC-LALNFS 119 + + H + F+ LG + + CT + +R LK+ L Sbjct: 70 PAITKIFHFARFDLAALYNALG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREVLGVD 127 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + S L G + D RE L Sbjct: 128 L---------SKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTEL 176 >gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1429 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 47/379 (12%), Positives = 94/379 (24%), Gaps = 108/379 (28%) Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + DGR+ A+ T R QN+P+ ++S Sbjct: 1061 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1101 Query: 356 PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR ++ G K V D + +E VLA + + K +G D +V Sbjct: 1102 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRA 1153 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A P D++ + GY+ + + Sbjct: 1154 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1179 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + S P + E + ++ G+ Q + + Sbjct: 1180 KTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1239 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 G S +P+ R+ + Sbjct: 1240 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1266 Query: 594 GGKLTENIVQAISRDILCEGMK----------NATKNGYDIVLTVHDEIVSETPDTPY-F 642 + +Q + L + M + K+ ++ VHD + + Sbjct: 1267 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRKDFYKDRAFLINFVHDSVWMDCHVDVLRE 1325 Query: 643 SVGTLCSLMTKNPSWAKGL 661 V C ++ + + Sbjct: 1326 CVTDTCRILGSVHEYVPKV 1344 >gi|47934826|gb|AAT39851.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 51/237 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + ++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQTTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 RS G KL+ D +G+E R+LA ++ +GE + Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDERYTNGILSGEHPH 208 >gi|119487500|ref|ZP_01621110.1| ribonuclease D [Lyngbya sp. PCC 8106] gi|119455669|gb|EAW36805.1| ribonuclease D [Lyngbya sp. PCC 8106] Length = 208 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 28/185 (15%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 +L +D ET +G+ + + + L V + L + L Sbjct: 24 RLAVDTET--------MGLLPWRD--RLCLVQLCDPKGQVTAVKIAKDQTEAPHLKKLLE 73 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + V H + F+ L ID+ CT + ++ + Sbjct: 74 ASNTLKVFHFARFDMATLLYYLDIDVNP--VFCTKIASKLARTYTGRHGL---------- 121 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K L+ + +D N + Y DV + ++L+ + + Sbjct: 122 ------KELVQELEQVELDKSSQSSDWGNVGNLSEDQLNYAANDVRYLLNVQQKLMVMLE 175 Query: 183 GERDL 187 E L Sbjct: 176 REERL 180 >gi|47934790|gb|AAT39833.1| DNA polymerase [Uncultured T7-like podovirus] Length = 198 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKVRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVPAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|296446798|ref|ZP_06888736.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b] gi|296255673|gb|EFH02762.1| 3'-5' exonuclease [Methylosinus trichosporium OB3b] Length = 204 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 23/172 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + L + + L +L L + Sbjct: 20 VAIDTETLGLNP----------HRDRLCLVQLSGGNGDADLVRIAPGQTRAPNLEALLAN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H F+ + KT G + ++ CT + ++ LK+ L E Sbjct: 70 PNVLKLFHFGRFDIAVMAKTFG--VMAEPVYCTKIASKLIRTYTDRHGLKDLVRELLGVE 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + D+ L K DV RE Sbjct: 128 IS--------KQQQSSDWGADTLSDAQLSYAASDVLYLHALREKLDVMLARE 171 >gi|315518941|dbj|BAJ51818.1| DNA polymerase-like protein [Ralstonia phage RSB2] Length = 701 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 78/248 (31%), Gaps = 35/248 (14%) Query: 6 IDIET-----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSDLL 58 DIET S P + V + D + R + L Sbjct: 12 FDIETDGLMEYSVIPGAETTVVSKVH-------CIVIHDYHANWYRRYRSDQPGAIEEAL 64 Query: 59 QYLRDETVMCVAHN-SLFERILFKKTLG-IDIPSKRWICTSVLARTNGLP-SSLKNACLA 115 + L D + VAHN ++ + + + +R + T VL+R N Sbjct: 65 KVLMDSD-LLVAHNGIKYDIPVLELLYPWFKLDKRRVLDTLVLSRLLFADIKDRDNV--L 121 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELF 174 L + K+ +L A + Y N + EYC++DV TR++F Sbjct: 122 LRKGQLPGKLYGSHSLKAWGYRVGEAKGEYGEGEGNVWAELNDDMVEYCEQDVRVTRKVF 181 Query: 175 KRLIPLS--------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 ++ + E D + G+ D L +A +R+ + Sbjct: 182 DLMVQNTYYFSDDMTQLQYAVRLEHDAAWVLAQQERNGFPFDERGAAALYAELAGKRQTI 241 Query: 221 DEDIVKLT 228 + ++ Sbjct: 242 LDKVMATF 249 Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 39/257 (15%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-------VDMSEGTLKSILSH 267 + + + + + ++ + + L + + E TL + Sbjct: 293 AKIEYVKDRPYTPIEHVVFNPGSRQHIAKVLQERGWVPTEFTETGLPKVDEETLAEAAEN 352 Query: 268 SNITQ-LAKDLILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 LI L + + G + G++ GA TGR + Sbjct: 353 LPEQYRDDVKLIAEYLLLVKRLGQIAEGDNAWLKLCNK-GFIHGSVNPNGA-VTGRATHA 410 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 +P + + + +R ++ V D +G Sbjct: 411 FPNLAQVPSGTALYGPQCRALFGVEH--------------IRKTVVGWAAAVQVGTDASG 456 Query: 384 IEARVLAWIA---GEDWKIKAFANGED---------IYVTTYAKAFNTPIDKVSKEQRAI 431 +E R L + I+ G+ + + P + + R Sbjct: 457 LELRCLGHFMARFDDGQYIRDILEGDIHWVNVEALGLVPKGTKRIKEGPGHEEHDKFRGY 516 Query: 432 GKVMELALGYQGGAKVF 448 K A Y G + Sbjct: 517 AKTFIYAFLYGAGDEKI 533 >gi|85714031|ref|ZP_01045020.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] gi|85699157|gb|EAQ37025.1| 3'-5' exonuclease [Nitrobacter sp. Nb-311A] Length = 206 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 29/196 (14%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDE 64 ID ET +G+ + + + + + D + +L + L D Sbjct: 23 AIDTET--------MGLKPHRD--RLCVVQMSPGDGSADVIQIARGQHDAPNLKKLLGDP 72 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 ++ + H + F+ G + + CT + +R + K Sbjct: 73 AIVKIFHFARFDLAALHNAFG--VMPRPVYCTKIASR-LTRTYT-----DRHGL-----K 119 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 +AL K S ++ A Y DV L +L + E Sbjct: 120 DLVREALSIDLSKQQQSSDWGSLALSDAQLA------YAASDVLHLHALRDKLDAMLARE 173 Query: 185 RDLWLLDQTINDRGYR 200 L R Sbjct: 174 DRTGLAQACFEFLPAR 189 >gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA] gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA] Length = 381 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 33/193 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + D+E S + Y E + L +A + P L Sbjct: 29 IVACDLEADS--------MHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFA 76 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + + V H + ++ + GI++ T + + G + L Sbjct: 77 NAAIRKVFHGADYDIRSLHRDFGIEVN--NLFDTMIACQLLGE--------REFGLAAQL 126 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K RF Y + EY +D EL+++L+ + Sbjct: 127 RK---------RFGVELDKQ--YQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELE 175 Query: 183 GERDLWLLDQTIN 195 + +++ Sbjct: 176 EKGRRGWVEEECE 188 >gi|207110463|ref|ZP_03244625.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1] Length = 103 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 26/106 (24%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L D ++ T G + TGR S QN+P Sbjct: 1 LLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNIP----------------------- 36 Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IAS L+ D + IE R+LA + + + Sbjct: 37 -VRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLM 81 >gi|67459045|ref|YP_246669.1| ribonuclease D [Rickettsia felis URRWXCal2] gi|67004578|gb|AAY61504.1| Ribonuclease D [Rickettsia felis URRWXCal2] Length = 203 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 41/207 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + L ++ + L Q +L L D Sbjct: 20 IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYSAPNLKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL---N 117 +T + H + F+ KK L ID+ + CT + ++ LK+ C L N Sbjct: 70 KTRCKIFHFARFDLAAIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCRELLSIN 127 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 S+ G EY +DV +L L Sbjct: 128 ISKQQQSSYWG-----------------------TDNLSSEQKEYAAKDVLYLHQLKDIL 164 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD 204 + E L L R +LD Sbjct: 165 QKMLLRENRLELAQDIFRFLPTRANLD 191 >gi|166365344|ref|YP_001657617.1| ribonuclease D [Microcystis aeruginosa NIES-843] gi|166087717|dbj|BAG02425.1| probable ribonuclease D [Microcystis aeruginosa NIES-843] Length = 209 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 54/215 (25%), Gaps = 37/215 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P + L V +L + + D Sbjct: 27 IAVDTETMGLIPGRD----------RLCLIQLCDPSGFVTAIRVFRGQTEAPNLKKVMED 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 E + V H + F+ +T GI CT + ++ LK+ L Sbjct: 77 ERIEKVFHFARFDVAQLSQTFGIATKP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 130 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 EG L D N Y DV + +LI + Sbjct: 131 ------EGIEL---------DKTAQSSDWGNAANLTPQQLSYAANDVRYLLSVRDKLIVM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIA 214 E I + + +++ Sbjct: 176 LQREERWE--LAQKCFSCIPIFTALDLQQYKDIFE 208 >gi|218508865|ref|ZP_03506743.1| ribonuclease III protein [Rhizobium etli Brasil 5] gi|327190020|gb|EGE57137.1| ribonuclease III protein [Rhizobium etli CNPAF512] Length = 208 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 54/203 (26%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 T + H F+ + T G+ + CT + +R + ++L Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASR-LSRTYT-----DRHGLKDNLK 125 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 +M S + Q EY DV L +L Sbjct: 126 EML-----------DVDISKTQQSSDWAAETLSQAQLEYAASDVLYLHALRDKLTARLIR 174 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 175 DGRFDHATACFAFLPTRAKLDLL 197 >gi|207109828|ref|ZP_03243990.1| DNA polymerase I [Helicobacter pylori HPKX_438_CA4C1] Length = 152 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 17/185 (9%), Positives = 41/185 (22%), Gaps = 41/185 (22%) Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 L+ + ++ + L + + + + +A+ Sbjct: 4 GRDIHLETSKALFGGDLAKEKRSIAKSINFGLVYGMGSKKLSETLNISLNEAKSYIEAYF 63 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + + E + + RV + + Sbjct: 64 KRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYIKGNYLREG---------- 113 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-----GYDIVL 626 I Q + D+L GM ++ ++L Sbjct: 114 --------------------------VNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLL 147 Query: 627 TVHDE 631 VHDE Sbjct: 148 QVHDE 152 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 +KE+R+I K + L Y G+K L++ + F+ + + + Sbjct: 21 AKEKRSIAKSINFGLVYGMGSKKLSET-----LNISLNEAKSYIEAYFKRFPSIKDYLNR 75 Query: 485 MQDQYPEFAVKDKLIGTAC 503 M+++ + + L+G Sbjct: 76 MKEEILKTSKAFTLLGRYR 94 >gi|47934830|gb|AAT39853.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D+ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVKQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|47934770|gb|AAT39823.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 45/222 (20%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVK------------------LTDGIIRSSR 236 G+ +D++ L + I + +++ E + K + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVLPPIVEERWSEKTGKRLKNKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTL 295 + L + +G + I L A ++++ Sbjct: 61 SRKQIAERLVGVGVKFKQKTEKGAVIVNEKVLGGIDIPEAKTIYEYLMLQKRA-AQIDSW 119 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 DGR+ G + GA TGR + +P Sbjct: 120 LTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP-----------------------S 154 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 155 VSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|319898371|ref|YP_004158464.1| Ribonuclease D [Bartonella clarridgeiae 73] gi|319402335|emb|CBI75874.1| Ribonuclease D [Bartonella clarridgeiae 73] Length = 193 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L+ L D Sbjct: 9 IAIDTET--------LGLKPHRD--RLCVVQLSSGDGTADIIQVAKGQNRAPNLVALLED 58 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116 + + + H F+ + T G + CT + + RT LK C L Sbjct: 59 KAITKIFHFGRFDLAILAHTFG--VIPDVVFCTKIASKLTRTYTDRHGLKEICSEL 112 >gi|239942253|ref|ZP_04694190.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239988720|ref|ZP_04709384.1| putative DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291445710|ref|ZP_06585100.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291348657|gb|EFE75561.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 563 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 66/473 (13%), Positives = 133/473 (28%), Gaps = 120/473 (25%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA----------QERKKLDEDIV 225 R+ L+ E L+ ++ G D+ +L + + +L +++ Sbjct: 156 RMRLLTASESAGTLVAAEMHRAGLPWRADVHRELLNGLLGERYAGGGEPRRLAELADEVS 215 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +R ++ F GI + L+ + A + ++ Sbjct: 216 AAFGRRVRPDLPADVVKA--FAQAGIRVKSTRRWELEEL------DHPAVEPLIAYKKLY 267 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + +GR R G + +GRW+ +P+ Sbjct: 268 RIWTAHGWSWLQDWVREGRFRPEY-QPGGTVSGRWTTNGGGALQIPK------------- 313 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++A G +LVVAD +E RVLA I+ + ++ + Sbjct: 314 -----------------VIRQAVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHD 356 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQ 464 D+Y +AF+ + K+ L Y + K +A+ Sbjct: 357 GDLYKALSDRAFSGDREH--------AKLALLGAVYGQTSGDGLKNLAAL---------- 398 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + A ++ E V +G V A + + G+ Q + Sbjct: 399 -------RRRFPLAVAYVDDAARAGEEGRVVRTWLGRTSPPVVSAGQDEEAGIPQEAPEG 451 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT 584 GG + R V++ D ++L + R + Sbjct: 452 AGDAGGPAGSGGGTARARGRFTRNFVVQGSAADWALLLLAGLRRTLFE------------ 499 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 Q + +V HDE++ P Sbjct: 500 ------------------QGL---------------RAQLVFFQHDEVIVHCP 519 >gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1430 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 46/379 (12%), Positives = 93/379 (24%), Gaps = 108/379 (28%) Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + DGR+ A+ T R QN+P+ ++S Sbjct: 1062 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1102 Query: 356 PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR ++ G K V D + +E VLA + + K +G D +V Sbjct: 1103 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRA 1154 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A P D++ + GY+ + + Sbjct: 1155 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1180 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + S P + E + ++ G+ Q + + Sbjct: 1181 KTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1240 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 G S +P+ R+ + Sbjct: 1241 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1267 Query: 594 GGKLTENIVQAISRDILCEGMK-NATKN---------GYDIVLTVHDEIVSETPDTPY-F 642 + +Q + L + M ++ ++ VHD + + Sbjct: 1268 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRRDFYEDRAFLINFVHDSVWMDCHVDVLRE 1326 Query: 643 SVGTLCSLMTKNPSWAKGL 661 V C ++ + + Sbjct: 1327 CVTDTCRILGSVHEYVPKV 1345 >gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania infantum JPCM5] Length = 1430 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 46/379 (12%), Positives = 93/379 (24%), Gaps = 108/379 (28%) Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + DGR+ A+ T R QN+P+ ++S Sbjct: 1062 LAILHRDGRVH-QHIDMTATTTSRTVSAYPSCQNIPKDDKSS------------------ 1102 Query: 356 PLGLASDCVRSCIIASNGKKL--VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR ++ G K V D + +E VLA + + K +G D +V Sbjct: 1103 --------VRRLFVSRFGSKGRCVEVDYSQLEIVVLAILCNDANLTKDLNSGVDFHVKRA 1154 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 A P D++ + GY+ + + Sbjct: 1155 AFFSGLPYDEIYQ-------------GYKRNVPKYVKL---------------------R 1180 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + S P + E + ++ G+ Q + + Sbjct: 1181 KTAKQFSFQRLYGAGVPLLHKTTGIPVKDLEASIQRENEEYPGIAQFHRIIRSVALRPNN 1240 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 G S +P+ R+ + Sbjct: 1241 PGLPTSFI------------------AEMPTGLRMSL---------------RTRDVVLN 1267 Query: 594 GGKLTENIVQAISRDILCEGMK-NATKN---------GYDIVLTVHDEIVSETPDTPY-F 642 + +Q + L + M ++ ++ VHD + + Sbjct: 1268 LPPIKNYPIQGYGAE-LAQMMLGRLYRHFVRKDFYEDRAFLINFVHDSVWMDCHVDVLRE 1326 Query: 643 SVGTLCSLMTKNPSWAKGL 661 V C ++ + + Sbjct: 1327 CVTDTCRILGSVHEYVPKV 1345 >gi|148251746|ref|YP_001236331.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] gi|146403919|gb|ABQ32425.1| putative 3'-5' exonuclease family protein [Bradyrhizobium sp. BTAi1] Length = 204 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 23/172 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L L + Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + + H + F+ T G + + CT + +R LK+ L + Sbjct: 70 PAITKIFHFARFDVATLFHTFG--VMPQPVYCTKIASRLARTYTDRHGLKDLVREL-LNV 126 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L+K + D+ L K DV RE Sbjct: 127 DLSK-------QQQSSDWGADNLSEPQLAYAASDVLHLHALREKLDVMLARE 171 >gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus sp. MC-1] Length = 213 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 41/212 (19%) Query: 1 MS--KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D ET +G+ + + + V + P L Sbjct: 24 MKSPFLAVDTET--------MGLDINRD--RLCVVQMCDVTGEVSVVQIRN-YQAP-RLK 71 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNAC-L 114 + V + H + F+ K+ L I+I CT + ++ LK+ Sbjct: 72 ALMEAPEVEKIFHFARFDLATMKRWLDIEIKP--VFCTKIASKLVRTYTGSHGLKDVSQE 129 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + Q +Y DV E+ Sbjct: 130 LLGVVMDKQ---------------------QQSSDWGAEQLTPEQLQYAASDVIHLVEIR 168 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 RL+ + E L L D+ + R+ LDL+ Sbjct: 169 ARLVEMLAREGRLQLADEIMRFLPTRVALDLL 200 >gi|316931442|ref|YP_004106424.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1] gi|315599156|gb|ADU41691.1| 3'-5' exonuclease [Rhodopseudomonas palustris DX-1] Length = 211 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 37/210 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L + L D Sbjct: 27 VAIDTET--------MGLHPHRD--RLCVVQLSNGDGSADVVQIPLGATDAPNLKKLLGD 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNACLALNFSE 120 V+ + H + F+ K G + + CT + +R LK+ L Sbjct: 77 PAVVKIFHFARFDLAALYKAFG--VMPQPVYCTKIASRLTRTYTDRHGLKDLVREL---- 130 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L K S + ++ A Y DV L +L + Sbjct: 131 ------LGIDL----SKQQQSSDWGAESLSDAQLA------YAASDVLHLHALRDKLDTM 174 Query: 181 SDGERDLWLLDQTINDRGY--RIDLDLVLK 208 E L R+DLD + Sbjct: 175 LAREGRTDLAAACFGFLPVRARLDLDGWSE 204 >gi|15604287|ref|NP_220803.1| hypothetical protein RP422 [Rickettsia prowazekii str. Madrid E] gi|3860979|emb|CAA14879.1| unknown [Rickettsia prowazekii] gi|292572036|gb|ADE29951.1| Ribonuclease D [Rickettsia prowazekii Rp22] Length = 203 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 35/204 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + L ++ + L Q +L L D Sbjct: 20 IAVDTET--------MGLNIHRD--KLCLLQFSNGNGEAHLVHFINQDYTAPNLKMLLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +T + H + F+ KK L ID+ + CT + ++ LK+ C L Sbjct: 70 KTRCKIFHFARFDLASIKKYLSIDL--ENIFCTKISSKLVRTYTDSHGLKDLCREL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 +H+ Q EY +DV +L L + Sbjct: 124 --------------LNINISKQQQSSYWGTDHLSLEQ--KEYAAKDVLYLHQLKDILQKM 167 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 E L L R+ LD Sbjct: 168 LLRENRLELAHDIFRFLPTRVHLD 191 >gi|57239514|ref|YP_180650.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58579496|ref|YP_197708.1| putative ribonuclease D [Ehrlichia ruminantium str. Welgevonden] gi|58617549|ref|YP_196748.1| putative ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|57161593|emb|CAH58521.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden] gi|58417161|emb|CAI28274.1| Probable ribonuclease D [Ehrlichia ruminantium str. Gardel] gi|58418122|emb|CAI27326.1| Probable ribonuclease D [Ehrlichia ruminantium str. Welgevonden] Length = 205 Score = 69.0 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 25/182 (13%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + + +D ET + + + L + + V L S+L + L Sbjct: 18 NTVAVDTET----------MGLVCRRDRLCLVQMSGSNGNVHLVKFPSTEYQASNLKKIL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALN 117 D ++ + H + F+ + LGI + CT + ++ LK C L Sbjct: 68 SDLSITKIFHFARFDITAIRYYLGIW--AIPCYCTKIASKLARTYTDHHGLKELCNELLG 125 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + + + L K D RE + L Sbjct: 126 IKL---------NKVQQSSDWGKEVLTSEQLNYAASDVIHLHALKSKLDAMLERENKQEL 176 Query: 178 IP 179 Sbjct: 177 AK 178 >gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein, putative [Roseobacter denitrificans OCh 114] gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 36/212 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D L + +L + L D Sbjct: 64 VAIDCET--------MGLHPHRD--RLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLED 113 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ + H F+ G CT + +R + L Sbjct: 114 PKVLKLFHFGRFDIAAMLNAFGATAAP--VYCTKIASRLVRTYTDRHGLAKLL------Q 165 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 ++ K S T + EY DV +L + L + + Sbjct: 166 ELLAID-----ISKQQQSSDWGAETLTDAQI------EYAASDVLYLHQLREALNKMLER 214 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 E + D + +L+ Sbjct: 215 EGR-------METAQACFDFLPMRAKLDLMGW 239 >gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 308 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYG KL ENIV+A SRD+L E M+ IV+ +HD V + P S+ Sbjct: 7 KKWSRIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAPADR--SL 64 Query: 645 GTLCSLMTK 653 + +MT Sbjct: 65 EKIVKIMTD 73 >gi|47934824|gb|AAT39850.1| DNA polymerase [Uncultured T7-like podovirus] Length = 198 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQVTEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|9634019|ref|NP_052093.1| DNA polymerase [Yersinia phage phiYeO3-12] gi|6599010|emb|CAB63614.1| DNA polymerase [Yersinia phage phiYeO3-12] Length = 704 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 56/253 (22%), Gaps = 51/253 (20%) Query: 235 SRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGS 287 ++ L + + L+ + Q DLI L Sbjct: 336 PSSRDHIQKKLQEAGWVPEKFTEKGAPVVDDEVLEHVRVDDPEKQACIDLIKEYLMIQKR 395 Query: 288 AILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 V DG++ G + GA TGR + +P Sbjct: 396 IGQAAEGDKAWLRYVQDDGKIHGAVNPNGA-VTGRATHSFPNLAQVP------------- 441 Query: 345 QALNRGETIADPLGLASDCVRSCI--------IASNGKKLVVADLAGIEARVLAWIAGED 396 + RS I D +G+E R LA Sbjct: 442 ----------GVRSPYGEQCRSAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHF---- 487 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + F NGE + R K Y G + G Sbjct: 488 --MARFDNGEYANEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI---GQIVG 542 Query: 457 LDLQQFSQNVKST 469 ++ + K Sbjct: 543 AGKERGKELKKKF 555 Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 62/243 (25%), Gaps = 66/243 (27%) Query: 67 MCVAHNS-LFERILFKK------TLGIDIPSKRWICTSVLARTNGL-------------- 105 + V HN ++ +K +P + I T VL+R Sbjct: 55 LIVFHNGHKYDVPALEKLAKLQLNRDFKLPRENCIDTLVLSRLLHANLKDTDMGLLRSGK 114 Query: 106 -------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 +L+ L + K + F + A V + Sbjct: 115 LPGRRFGSHALEAWGYRLGEMKGEYKDD--------FKAMLEEQGEEYVDGAEWVSFNEP 166 Query: 159 FGEYCKRDVEATRELFKRLIPLS-------------------------DGERDLWLLDQT 193 Y +DV T +L ++ + D E L Sbjct: 167 MMAYNVQDVVVTVKLLEKFLTDLHYFPAGMDFTKYDADLFWREAGESVDIEHRAAWLLAK 226 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL-FLITGID 252 G+ + + +L +A +R +L + + S Q + TG Sbjct: 227 QERNGFPFNTQAIEELYVELAAKRAELLRKLTE----TFGSWYQPKGGKELFKHPRTGKP 282 Query: 253 LVD 255 L Sbjct: 283 LPS 285 >gi|27375830|ref|NP_767359.1| hypothetical protein blr0719 [Bradyrhizobium japonicum USDA 110] gi|27348968|dbj|BAC45984.1| blr0719 [Bradyrhizobium japonicum USDA 110] Length = 204 Score = 69.0 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 25/173 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + + +L L + Sbjct: 20 VAIDTET--------MGLNPHRD--RLCVVQLSPGDGSADVVQIPKGHTDAPNLKALLAN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSLKNAC-LALNFS 119 + + H + F+ + ++ G + + CT + +R LK+ LN Sbjct: 70 PAITKIFHFARFDVAVLYQSFG--VMTGPIYCTKIASRLTRTYTDRHGLKDLVREVLNVD 127 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + DS L + D RE Sbjct: 128 L---------SKQQQSSDWGSDSLTEPQLAYAASDVLHLHALRERLDAMLVRE 171 >gi|77917938|ref|YP_355753.1| RNase D [Pelobacter carbinolicus DSM 2380] gi|77544021|gb|ABA87583.1| RNase D [Pelobacter carbinolicus DSM 2380] Length = 375 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 16/121 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D+E S + +Y E + L + V + + + L L D Sbjct: 26 IAVDLEADS--------LHSYQE--KVCLLQISTSTRTVLVDPLAVED--LAALAPVLAD 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SL-KNACLALNFSEH 121 T+ + H + ++ + I++ T + + G L L+ Sbjct: 74 PTIRKIFHAADYDIRCLFRDFRIEVQG--LFDTMIACQMLGEKRVGLADVLAKYLDVELD 131 Query: 122 L 122 Sbjct: 132 K 132 >gi|238695631|ref|YP_002922658.1| P44 [Xanthomonas phage phiL7] gi|190343998|gb|ACE75784.1| P44 [Xanthomonas phage phiL7] Length = 330 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 46/309 (14%) Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G K+V +D +E V A + + + + EQ Sbjct: 6 GGKIVQSDFKSLEIYVQAALTQCIQLV-------------ADLIAGLDMHVLRAEQA--- 49 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF 492 + D S + S + Sbjct: 50 --------WGRAEGRDYAYILKAAQDENHPEHAKWSE--LRSNAKVFSFQRAYGAGVAKI 99 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A + E + +A ++ ++ +D+T+ ++E ++R + M+ Sbjct: 100 AATTGMSVEDVEALIEAEAERYPELISYIEDITDY----IKENRVPTSRYCQHPQIPGMQ 155 Query: 553 RHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 H + P + YS+ + A+ + ++ +VQ + Sbjct: 156 CQLGRSHYITPDGKMYSYSESPSPEFVAKRPASRGGTPQSFSPTEIKNYVVQGTGGEWTK 215 Query: 612 EGMKNATKNGYD---------IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAK-- 659 M A + Y +V TVHD I + +T + + L + M + ++ + Sbjct: 216 AAMYLAVRAFYRRGNFGGMALLVNTVHDAIYLDASAETCHDAAAMLEAAMFEASTYMEFW 275 Query: 660 ---GLPLKA 665 LPL Sbjct: 276 FKWKLPLGV 284 >gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414] Length = 189 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 59/214 (27%), Gaps = 35/214 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P ++ + L + V + +L + Sbjct: 7 IAVDTETMGLLP----------QRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEA 56 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H + F+ + LGI + CT + ++ LK L Sbjct: 57 VNVVKIFHFARFDIATLRHNLGIQVQP--VFCTKIASKLARTYTNRHGLKEVVQELEH-- 112 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 I + Y DV + ++L+ + Sbjct: 113 -----------IELDKSSQSSDWGNAANLSEAQL------NYAANDVRYLISVRQKLMEM 155 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E + W + Q + +L+ ++L Sbjct: 156 LQRE-ERWEIAQECFQVLPTLVTLDLLQFKDLFE 188 >gi|157825707|ref|YP_001493427.1| ribonuclease D [Rickettsia akari str. Hartford] gi|157799665|gb|ABV74919.1| Ribonuclease D [Rickettsia akari str. Hartford] Length = 203 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 65/207 (31%), Gaps = 41/207 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + L ++ + L Q +L L D Sbjct: 20 IAIDTET--------MGLNLHRD--KLCLLQFSNGNGEAHLVHFVNQDYTAPNLKALLLD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL---N 117 +T + H + F+ K+ L ID+ + CT + ++ LK+ C L N Sbjct: 70 KTRCKIFHFARFDLASIKQYLSIDL--ENIFCTKISSKLVRTYTDNHGLKDLCRELLNIN 127 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 S+ G EY +DV +L L Sbjct: 128 ISKQQQSSYWG-----------------------TDNLSSEQKEYAAKDVLYLHQLKDML 164 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLD 204 + E L L R +LD Sbjct: 165 QKMLLRENRLELAHDIFRFLPTRANLD 191 >gi|194473823|ref|YP_002048647.1| DNA polymerase [Morganella phage MmP1] gi|194307044|gb|ACF42026.1| DNA polymerase [Morganella phage MmP1] Length = 703 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 62/256 (24%), Gaps = 52/256 (20%) Query: 233 RSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASS 285 + +++ L + + L+ + Q + DLI + L Sbjct: 327 FNPSSRDHIQLKLQEAGWVPTEFTPTGQPVVDDTVLEHVKVDDPEKQASIDLIKDYLLIQ 386 Query: 286 GSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 V DGR+ G++ GA TGR + +P Sbjct: 387 KRIGQAAEGDKAWLRYVEEDGRMHGSVNPNGA-VTGRATHSFPNVAQVP----------- 434 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA-----SNG----KKLVVADLAGIEARVLAWIA 393 + R A +G D +G+E R LA Sbjct: 435 ------------SVRAPYGEECRKAFGAEHNRKPDGTKDPWVQAGIDASGLELRCLAHF- 481 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + F NGE + + R K Y G + Sbjct: 482 -----MARFDNGEYAHEILNGDIHTKNQNAAELPTRDNAKTFIYGFLYGAGDEKI---GQ 533 Query: 454 HCGLDLQQFSQNVKST 469 G ++ + Sbjct: 534 IVGAGKERGKELKAKF 549 Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 80/316 (25%), Gaps = 92/316 (29%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQS-AMPSDLLQYL 61 L DIET G+ ++ Y +D D D + +++ Sbjct: 2 LVTDIETD--------GLLKQTKRFHC-GVTYDYDTDYEKFTPDELSGYLDLLEEVVA-- 50 Query: 62 RDETVMCVAHNS-LFERILFKK------TLGIDIPSKRWICTSVLARTNGL--------- 105 + + V HN F+ K ++P + + T V++R Sbjct: 51 --KDGLIVFHNGTKFDTKALTKLAKLQLNRDFELPKRNCLDTLVISRLLHANLKNTDAPL 108 Query: 106 ------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 +L+ L + K + Sbjct: 109 LRKGILPGKRYGSHALEAWGYRLGVLKGEYKD------------DYKREVEAQGEEYHEG 156 Query: 154 QAW----QLFGEYCKRDVEATRELFKRL------IPLSD--------------------- 182 W Q +Y +DV T+ L ++ P+++ Sbjct: 157 DEWLYFNQAMLDYNVQDVVVTKALLEKFLQDSWYFPVNEGEDWTVYTTMTATEFWSRVNY 216 Query: 183 ---GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D L + G+ D + + + R+KL +V R Sbjct: 217 SVTLEHDAAWLLAKMELNGFPFDTESIEGHYAKWSALREKLLAKLVDTFGSWYRPKGGNT 276 Query: 240 ALRMYLFLITGIDLVD 255 R TG + Sbjct: 277 PFR---HPKTGKPMKK 289 >gi|209542515|ref|YP_002274744.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5] gi|209530192|gb|ACI50129.1| 3'-5' exonuclease [Gluconacetobacter diazotrophicus PAl 5] Length = 210 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 38/204 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D E +G+ + + + L + D L + P +L + + D Sbjct: 26 IAVDTE--------AMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 ++ + H + F+ + + +LG+ + ICT + ++ L C L Sbjct: 75 PSITKLMHFARFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCREL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L + +P + Y DV L+ +L L Sbjct: 129 ------LGVDLSKQQQTSDWGAPELTPEQ----------KAYAASDVLHLHALWTKLEAL 172 Query: 181 SDGE--RDLWLLDQTINDRGYRID 202 E RDL R+D Sbjct: 173 LHREGRRDLAQACYDFLPTRARLD 196 >gi|47934834|gb|AAT39855.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWGVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|254505241|ref|ZP_05117392.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11] gi|222441312|gb|EEE47991.1| 3'-5' exonuclease, putative [Labrenzia alexandrii DFL-11] Length = 223 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 27/205 (13%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 ET S + + + + + + D + +L D Sbjct: 34 ETASAVAVDSETLGLNPHRDRLCVVQLSPGDGSADVVQIARGQTEAPNLAALFTDAAKPK 93 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKM 125 + H + F+ + + LGI + CT + ++ LK+ L Sbjct: 94 IFHFARFDVAVLRHYLGIHVTP--VWCTKIASKLVRTYTDRHGLKDITREL--------- 142 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 L K S T ++ A Y DV +L +L + + E Sbjct: 143 -----LGVELSKQQQSSDWAAETLSDAQLA------YAASDVLHLHDLKAKLEMMLEREE 191 Query: 186 DLWLLDQTINDRGYR--IDLDLVLK 208 + + + R +DL + Sbjct: 192 RTNIAEACFSFLPVRAELDLKGWEE 216 >gi|115374272|ref|ZP_01461557.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1] gi|115368693|gb|EAU67643.1| DNA polymerase I domain protein [Stigmatella aurantiaca DW4/3-1] Length = 699 Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 75/724 (10%), Positives = 154/724 (21%), Gaps = 153/724 (21%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M D ET +P L + + ++ Sbjct: 1 MKIWSFDTETHRKRPGLVSPP----------LVCGSIAARELGSERLLDKEQARQFFANA 50 Query: 61 LRDETVMCVAHNSLFERILFK--KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + V V N ++ + + I+ L + Sbjct: 51 ISNRDVHLVGANLPYDLGVMAADNSWLIE----SIFD------ALDAGR-LHDVATREAL 99 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE------ATRE 172 + K L + R L Y D+ Sbjct: 100 IDIA------KGLHGVDPTTGRKLDDDEGARY---PLALLVKRYLGLDISEDKKNPLAWR 150 Query: 173 L-FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L + L + + ++ D Y ID+ + Q L + ++ Sbjct: 151 LRYGELDGVPVERWPVEAVEYPKCDARYTIDVFFKQEEQARDVTNGGNLHAEPDQMRAAF 210 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH----SNITQLAKDLILNRLASSGS 287 + + G+ + ++ + + D + + Sbjct: 211 VLHLASI-----WGLRTNGVAVAELRKRVEAEWQQNRIRFQAAGIFRADGSKDTKRLAAL 265 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + R R ++L + + ++ + + + Sbjct: 266 VTAAYGGNPPYTAPSARYPD--GQIATDRDTLLGSGDPLLEDLGKSGKVDKYKSTYLDVV 323 Query: 348 NRGETIADPLG-----------------LASDCVRSCIIASNGKKLVVADLAGIEARVL- 389 G ++ +R A G D G+E R + Sbjct: 324 EAGVSLPINPRFNVLVSTTRVSSDYQQLPQKGGIREVHEARPGYVFCSVDYGGLELRTMA 383 Query: 390 ---AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI----------DKVSKEQRAIGKVME 436 W G A +G D++ A+ D V+ R + K++ Sbjct: 384 QRAIWELGYSKMADALNSGLDVHTLAAAEFLGESYAGLLAKVKAKDPVAVAFRQLAKILN 443 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 G A E M + Sbjct: 444 FGKGGGMTGGSLVYNARAKDRVSFCLLAKRADMCGVERVPVTVQRKPKMVCRT------- 496 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + + W A +DL + GG Sbjct: 497 --CVEVARELDEKWLAAWPE----QRDLQRKAKSLTYGGG-------------------- 530 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 + + + ++R ++ Q + GM Sbjct: 531 --------------------VADVMIPGANILRGACGYTQILNTPFQGLGAVGCKLGMWR 570 Query: 617 ATKN----------GYDIVLTVHDEIVSETPDTPYFSVGTLCS----LM-----TKNPSW 657 ++ G +VL VHDE++SE + LM P Sbjct: 571 VSREMYTVRSSPLFGSRLVLNVHDELISELLADDQQRLHDAAERKALLMRDAMKETTPDL 630 Query: 658 AKGL 661 A + Sbjct: 631 AAAV 634 >gi|322786066|gb|EFZ12677.1| hypothetical protein SINV_07179 [Solenopsis invicta] Length = 136 Score = 68.6 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 29/98 (29%) Query: 597 LTENIVQAISRDILCEGMK----------------------------NATKNGYDIVLTV 628 VQ + DI+ + M N + G +VL + Sbjct: 25 AVNTKVQGSAADIVKKAMISIEDKIRSYFPDSTVIFPEVHTTRKLRSNLQQRGGYLVLQL 84 Query: 629 HDEIVSETPDTPYFSVGTLCSL-MTKNPSWAKGLPLKA 665 HDE++ E V + M + LP+K Sbjct: 85 HDELLYEVNLVDLKQVAVIIKESMENVCQLSVPLPVKV 122 >gi|281306681|ref|YP_003345487.1| hypothetical protein SBWP25_0022 [Pseudomonas phage phi-2] gi|271277986|emb|CBH51592.1| hypothetical phage protein [Pseudomonas phage phi-2] Length = 331 Score = 68.6 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 38/230 (16%) Query: 2 SKLFIDIET------RSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWDRTE----Q 50 L IDIET VG+ E+ I W EP V D E Sbjct: 76 RILLIDIETAPILGYVWSLWKQNVGLNQIKEEWYILSYCAKWLGEPEVIYEDIRENPFCD 135 Query: 51 SAMPSDLLQYLRDETVMCVAHNSL-FE------RILFKKTLGIDIPSKRWICTSVLARTN 103 + + L + + DE + + N F+ R++ L + I T ++A+ Sbjct: 136 KPLLAGLWKLM-DEADIIIGQNGKAFDMPKIQARLVMNGYL--PPRPYKVIDTMLMAK-- 190 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGK--ALIARFCKGSIDSPPY---DCTRANHVQAWQL 158 F+ + + G+ L P + + +AW Sbjct: 191 ----------QQFRFTSNKLEWMTGESANLTTLTKSKHSKFPGFLLWAECLKKNPEAWDE 240 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 EY DV + EL+ +L P +L ++ R D + + Sbjct: 241 MKEYNIPDVTSMEELYLKLRPWYQQHPNLAAYVESEEMLCPRCLSDDIKQ 290 >gi|291301867|ref|YP_003513145.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728] gi|290571087|gb|ADD44052.1| DNA-directed DNA polymerase [Stackebrandtia nassauensis DSM 44728] Length = 548 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 76/307 (24%), Gaps = 57/307 (18%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + F G + LK I A +L S Sbjct: 217 FNPDSPQQVLA-AFRKAGHPIETTRAWELK------TIDHPAVPPLLRYKELS------- 262 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 R+ +G + W G + P +R R T Sbjct: 263 -----------RVH---SAHGWNWLSEWVGDGPGGPDSPA-KRFRPRYVVGGVVTGRWAT 307 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R+ A G KLVVAD A +E R+LA ++ + I A + Sbjct: 308 DGGAALQIPKVIRAAATADAGHKLVVADAAQLEPRMLAAMSQDPGMIAAAEADDMYAALA 367 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + K+ L+ Y G A + + Sbjct: 368 PTFDGSRDD----------AKIALLSAMYGGTAGNATALLTVM----------------R 401 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--QGVLQLWKDLTEGFAC 530 + A ++ + + +G W G + +D Sbjct: 402 RRFPTAYAYVEQAARDGEKGGLVRTWLGRTSPAPGDGWWNALTGPGGTRSARDRGRFTRN 461 Query: 531 VVQEGGS 537 V +G + Sbjct: 462 FVVQGTA 468 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 45/194 (23%), Gaps = 24/194 (12%) Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + A D + G + +A + V R V Sbjct: 356 AAEADDMYAALAPTFDGSRDDAKIALLSAMYGGTAGNATALLTVMRRRFPTAYAYVEQAA 415 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQL--------MRERTYGGKLT-ENIVQAISRDILCEG 613 + + R G+ T +VQ + + Sbjct: 416 RDGEKGGLVRTWLGRTSPAPGDGWWNALTGPGGTRSARDRGRFTRNFVVQGTAAEW-ALS 474 Query: 614 MKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKG-----L 661 M + D+V HDEI+ + +V + + G + Sbjct: 475 MMALLRSRLWERELGDLVFFQHDEIIVHCEQSRAETVAGLIQECADQATRLLFGRLSMRV 534 Query: 662 PLKAEGYEAKRYRK 675 PL A Y K Sbjct: 535 PLSAA--IVDSYDK 546 >gi|150398650|ref|YP_001329117.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419] gi|150030165|gb|ABR62282.1| 3'-5' exonuclease [Sinorhizobium medicae WSM419] Length = 208 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 56/210 (26%), Gaps = 37/210 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVAMLSD 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + H F+ + T G+ CT + +R LK+ Sbjct: 74 PARQKIFHFGRFDIAVLFHTFGVTASP--VFCTKIASRLARTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L A+ + QL EY DV L +L Sbjct: 123 ---------NLKELLDVDISKQQQSSDWAADILSPAQL--EYAASDVLHLHALRDKLTAR 171 Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLK 208 DG +L + ++DL + Sbjct: 172 LLRDGRMELAEACFSFLPTRAKLDLLGWEE 201 >gi|15890866|ref|NP_356538.1| ribonuclease D [Agrobacterium tumefaciens str. C58] gi|15159163|gb|AAK89323.1| ribonuclease D [Agrobacterium tumefaciens str. C58] Length = 208 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 55/206 (26%), Gaps = 35/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRIAAGQKQAPNLVHMLAD 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + H F+ + T G+ + CT + +R LK+ Sbjct: 74 PARQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRLCRTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + A + QL EY DV L +L Sbjct: 123 ---------NLKEMLEVDISKAQQSSDWAAETLSPAQL--EYAASDVLYLHALRDKLTAR 171 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + + D R LDL+ Sbjct: 172 LIRDGRIEHADACFAFLPTRAKLDLL 197 >gi|329888476|ref|ZP_08267074.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC 11568] gi|328847032|gb|EGF96594.1| 3'-5' exonuclease family protein [Brevundimonas diminuta ATCC 11568] Length = 204 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 42/225 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 ++ ID ET +G+ + + + D + + +L + L Sbjct: 19 QVAIDSET--------MGL-RFRRDPLCV-VQLSSGDGNAHVVRLNRPAYDCPNLKRLLT 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119 D V+ + H F+ +F LG++ CT + ++ LK+ L Sbjct: 69 DPKVLKIFHFGRFDIGMFDLHLGVETRP--VYCTKIASKLARTYTDRHGLKDVAKELA-- 124 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 G S + + Q +Y DV + RL Sbjct: 125 ------------------GVDMSKAQQSSDWGAAELSQAQLDYAASDVLYLHAIMNRLNE 166 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + E + D V +L + + Sbjct: 167 MLVREGR-------MELAQACFDFLPVRSRLDLAGWDEIDIFAHA 204 >gi|58584866|ref|YP_198439.1| ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419182|gb|AAW71197.1| Ribonuclease D [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 206 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 36/206 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D E +G+ + + L +++D L A P +L + L Sbjct: 20 RSIAVDTE--------AMGLLHVRD--RLCLIQLSFNDGNAHLIQFKNDYAAP-NLRKIL 68 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D+ + + H + F+ + L + + CT + +R SLK CL L Sbjct: 69 GDKNITKIFHFARFDVSIICYYL--ETWALPCYCTKIASRLVRTYTDNHSLKELCLEL-- 124 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L + K S + Y DV ++ ++L Sbjct: 125 ------------LDTKLNKQQQSSDWGSENLTDKQ------KSYAASDVLYLHKIKEKLD 166 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204 + + E L + R++LD Sbjct: 167 LMLERENRKELAQKCFEFLPIRVELD 192 >gi|194100439|ref|YP_002003812.1| gp5 [Klebsiella phage K11] gi|193201378|gb|ACF15856.1| gp5 [Klebsiella phage K11] Length = 709 Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 62/263 (23%), Gaps = 51/263 (19%) Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV---DMSEGTLKSILSH----SNITQLAKDL 277 + ++ + + + L + + +L H Q DL Sbjct: 331 YTPVEHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLEHVRVGDPEKQRCIDL 390 Query: 278 ILNRLASSGSAILKLN---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I L V DG++ G++ GA TGR + +P Sbjct: 391 IKEYLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNPNGA-VTGRATHSFPNLGQVP--- 446 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS---NG-----KKLVVADLAGIEA 386 + R+ A +G D +G+E Sbjct: 447 --------------------GVRSPYGEPCRAAFGAEHHLDGLTGQPWVQAGIDASGLEL 486 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R LA + + +G V R K Y G + Sbjct: 487 RCLAHF------MSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTFIYGFLYGAGDE 540 Query: 447 VFKTMASHCGLDLQQFSQNVKST 469 G ++ + K Sbjct: 541 KI---GQIVGAGKERGKELKKKF 560 Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 73/679 (10%), Positives = 152/679 (22%), Gaps = 130/679 (19%) Query: 58 LQYLRDE---TVMCVAHNS-LFERILFKKTLG------IDIPSKRWICTSVLARTNGL-- 105 L L E + V HN ++ + K +P + + T VL+R Sbjct: 43 LDALEAEVARGGLIVFHNGHKYDAPVLTKLAKLQLNREFHLPRENVVDTLVLSRLLFANI 102 Query: 106 -------------------PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 +L+ L + K + K L + + Sbjct: 103 KDSDMALLRSGKLPGKRYGSHALEAWGYRLGEMKGEYKDDFKKLLEEQGEDYVDGAEWIS 162 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI---------------------------- 178 + Y +DV T+ L ++L+ Sbjct: 163 FN--------EPMMAYNVQDVVVTKALLEKLLSDKHYFPLFGSNTIEFYTSAYCLRFWEE 214 Query: 179 --PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 E L G+ + + +L +A R +L + + + Sbjct: 215 ACEAVWLEHRAAWLLAKQERNGFPFNTKAIEELYVELAGRRSELLQTLTDTFGTWYQPKG 274 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 T L TG L Sbjct: 275 GTELF---LHPRTGKPLGK----------------YPRVKYPKQGGIYKKPKNKAQREGR 315 Query: 297 EAVSSDGRLRGTLQFYGASRTGRW--SGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 E D R Y + S L T+ E + Sbjct: 316 EPCELDTRDYVEGAPYTPVEHVVFNPSSRDHIALKLKEAGWVPTEFTEKGAPKVDDEVLE 375 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 + R ++ + I+ R+ G+ ++ I+ + Sbjct: 376 HVRVGDPEKQR--------CIDLIKEYLMIQKRIGQAAEGDKAWLRYVQEDGKIHGSVNP 427 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ--NVKSTSTF 472 + + +G+V + Y + + LD ++ Sbjct: 428 --NGAVTGRATHSFPNLGQVPGVRSPYGEPCRA--AFGAEHHLDGLTGQPWVQAGIDASG 483 Query: 473 EDWEQAESHHLWMQDQYPE----FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE-- 526 + D + TA EL + + + Sbjct: 484 LELRCLAHFMSKYDDGAYADVILNGDIHTVNQTAAELPTRDNAKTF--IYGFLYGAGDEK 541 Query: 527 --GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV-YSDVKGDCSYLNTA 583 +E G ++ + + ++ SSR + VK ++ Sbjct: 542 IGQIVGAGKERGKELKKKFLENTPAIAALREGIQQTLVESSRWVAGEQKVKWKRRWIKGL 601 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI------------VLTVHDE 631 + + R+ ++Q+ I + + + VHDE Sbjct: 602 DGRKVHVRS-PHAALNTLLQSAGALICKLWIVETEELLLKAGLKHGWDGDFAYMAWVHDE 660 Query: 632 IVSETPDTPYFSVGTLCSL 650 I + + + Sbjct: 661 IQVACRTSEI--AQQVIDI 677 >gi|47934776|gb|AAT39826.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFRCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|218442029|ref|YP_002380358.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] gi|218174757|gb|ACK73490.1| cell divisionFtsK/SpoIIIE [Cyanothece sp. PCC 7424] Length = 648 Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 26/127 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSD 56 L++D E Y ++L ++ V + D ++ + D Sbjct: 21 KTLWLDTE----------IADWYTPNPRLSLIQILTNPKNIEENNVYVLDVLDKPDLIQD 70 Query: 57 LL-QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA-----RTNGLP-SSL 109 + Q +++ + V HN+ F+ K LG K CT +A + +P L Sbjct: 71 FINQIMKNPQIEKVFHNASFDI----KYLGGKEEVKNVTCTLKIAKKIGKHSLNVPNLKL 126 Query: 110 KNACLAL 116 K L Sbjct: 127 KTLAEYL 133 >gi|225626350|ref|YP_002727846.1| hypothetical protein PPphikF77_gp27 [Pseudomonas phage phikF77] gi|225594859|emb|CAX63144.1| hypothetical protein [Pseudomonas phage phikF77] Length = 348 Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 29/196 (14%) Query: 2 SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMP 54 L +DIET VG+ I W + V D + + Sbjct: 94 KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDC-QGDPLD 152 Query: 55 S-----DLLQYLRDETVMCVAHNSL-FER-ILFKKTLGIDIPSKR---WICTSVLARTNG 104 L + L + ++ V N F+ + + +P R I T ++A+ Sbjct: 153 DMHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQF 211 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +S K + K K L +F D ++ +AW+ Y Sbjct: 212 AFTSRKL--EYMTHKACTIK----KRLHGKF--PGFDLW--AACLQDNPEAWEEMRLYNI 261 Query: 165 RDVEATRELFKRLIPL 180 DV + EL+ + P Sbjct: 262 DDVRSMEELYILMRPW 277 >gi|282866382|ref|ZP_06275427.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE] gi|282558778|gb|EFB64335.1| DNA-directed DNA polymerase [Streptomyces sp. ACTE] Length = 568 Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 57/371 (15%), Positives = 110/371 (29%), Gaps = 55/371 (14%) Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-RLIPLSDGERDLWLLDQTI 194 + S +D V L Y + R+ L+ E L+ + Sbjct: 115 AEPGSQSSLFDPPSGTTVPFDALLQVYAGQVRRHDAAEHPDRMRLLTASESAGLLVAAEM 174 Query: 195 NDRGYRIDLDLVLKLQELIAQERK-------KLDEDIVKLTDGIIRSSRQ-TYALRMYLF 246 + G D+ ++ + + ER +L E +++ R R A + F Sbjct: 175 HRSGLPWRADVHREVLDELLGERYAGGGEPRRLAEAADEVSAAFGRRVRPDLPADVVKAF 234 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 GI + L+ + A + ++ + +GR R Sbjct: 235 AQAGIKVRSTRRWELEKV------DHPAVEPLIRYKKLYRVWTAHGWSWLTDWVREGRFR 288 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 G + +GRW+ +PR +R Sbjct: 289 PEY-QPGGTVSGRWTTNGGGALQIPR------------------------------VIRQ 317 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 ++A G +LVVAD +E RVLA I+ + ++ + D+Y +AF+ D Sbjct: 318 AVVADPGWRLVVADADQMEPRVLAAISRDRGLMEVAGHEGDLYTALSDRAFHGDRDH--- 374 Query: 427 EQRAIGKVMELALGYQGGAK-VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 K+ L Y + K +A+ + ++ E+ + Sbjct: 375 -----AKIALLGAVYGQTSGDGLKNLAALRRRFPHAVAYVDEAAKAGEEGRLVRTWLGRT 429 Query: 486 QDQYPEFAVKD 496 + Sbjct: 430 SPPAAGAGESE 440 >gi|148807513|gb|ABR13560.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L G+ +E + +L +I LI L A Sbjct: 47 FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPG--AKLIYEYLMLQKRA 103 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++++ V DGR+ G + GA TGR + +P Sbjct: 104 -AQIDSWLTHV-KDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G++ R+LA ++ Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLKLRMLAHYMRDER 186 >gi|213025636|ref|ZP_03340083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 99 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 12/99 (12%) Query: 162 YCKRDVEATRELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 Y D + T +L ++ P E L + + G +ID ++ K Sbjct: 1 YAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHS 60 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 E I +L++ G + T L+ LF Sbjct: 61 EEITLRLAELEKKAHD-IAGEAFNLSSTKQLQTILFEKQ 98 >gi|73667429|ref|YP_303445.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] gi|72394570|gb|AAZ68847.1| 3'-5' exonuclease [Ehrlichia canis str. Jake] Length = 216 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 26/178 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET + + + L A V L + P +L+ L D Sbjct: 32 VAIDTET----------MGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAP-NLVSVLSD 80 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALNFS 119 ++ + H + F+ + + LG+ CT + ++ LK C L Sbjct: 81 PNIIKIFHFARFDIAVMRYYLGMWANPC--YCTKIASKLVRTYTDHHGLKELCYELLGVK 138 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + +S + L K D RE + L Sbjct: 139 L---------NKMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKREL 187 >gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp. SA3_actG] Length = 555 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 88/291 (30%), Gaps = 65/291 (22%) Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 +L E+I + +R +R F G+ L L+ + A Sbjct: 211 LAELAEEISRAFGRRVRPDLPAEVVRA--FAEAGVKLTSTRRWELEKV------DHPAVA 262 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + +GR R GA +GRW+ +P+ Sbjct: 263 PLLTYKKLYRVWTAHGWSWLADWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK---- 317 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR ++A G +LVVAD A +E R+LA +AG+ Sbjct: 318 --------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDT 351 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHC 455 + A +D+Y +AF D K+ L Y + K +A+ Sbjct: 352 ALLDVAAKADDLYAAVSDRAFAGDRD--------RAKIAVLGAIYGQTSGDGLKNLAAL- 402 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + +A ++ E + +G C + Sbjct: 403 ----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 437 >gi|255601377|ref|XP_002537664.1| DNA polymerase I, putative [Ricinus communis] gi|223515546|gb|EEF24720.1| DNA polymerase I, putative [Ricinus communis] Length = 71 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 612 EGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLK 664 M +++ VHDE+V E P V L LM +PL Sbjct: 1 MAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEVVREKLPELMKNVAE--LKVPLL 58 Query: 665 AEGYEAKRY 673 AE K + Sbjct: 59 AEVGIGKNW 67 >gi|190889732|ref|YP_001976274.1| ribonuclease III protein [Rhizobium etli CIAT 652] gi|190695011|gb|ACE89096.1| ribonuclease III protein [Rhizobium etli CIAT 652] Length = 208 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 53/203 (26%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ L D Sbjct: 24 VAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLED 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 T + H F+ + T G+ + CT + +R + + Sbjct: 74 PTHQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASR-LSRTYT-----DRHGLKD--- 122 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 L + A + QL EY DV L +L Sbjct: 123 ------NLKEMLDVDISKTQQSSDWGAETLSPAQL--EYAASDVLYLHALRDKLTARLIR 174 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 + R LDL+ Sbjct: 175 DGRFDHATACFAFLPTRAKLDLL 197 >gi|213021568|ref|ZP_03336015.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 70 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPLKA 665 I + A + +++ VHDE+V E +V + LM +PL Sbjct: 1 AMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTR--IDVPLLV 58 Query: 666 EGYEAKRY 673 E + + Sbjct: 59 EVGSGENW 66 >gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 565 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 88/291 (30%), Gaps = 65/291 (22%) Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 +L E+I + +R LR F G+ L L+ + A Sbjct: 221 LAELAEEISRAFGRRVRPDLPAEVLRA--FAEAGVKLTSTRRWELEKV------DHPAVA 272 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +L + +GR R GA +GRW+ +P+ Sbjct: 273 PLLTYKKLYRVWTAHGWSWLADWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK---- 327 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR ++A G +LVVAD A +E R+LA +AG+ Sbjct: 328 --------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDT 361 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMASHC 455 + A +D+Y +AF D K+ L Y + K +A+ Sbjct: 362 ALLDVAAKADDLYAAVSDRAFAGDRD--------RAKIAVLGAIYGQTSGDGLKNLAAL- 412 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + +A ++ E + +G C + Sbjct: 413 ----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPL 447 >gi|330469036|ref|YP_004406779.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris AB-18-032] gi|328812007|gb|AEB46179.1| bifunctional 3'-5' exonuclease/DNA polymerase [Verrucosispora maris AB-18-032] Length = 548 Score = 67.8 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 71/290 (24%), Gaps = 63/290 (21%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L I + + L F GIDL + L+ + A Sbjct: 198 RRLADLAAQIAEAFGVRQVHADSPAELLR-AFARAGIDLPNTRSWVLRGV------DHPA 250 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L +A DGR + G +GRW+ +P+ Sbjct: 251 VPLVLEYKELYRIWTAHGRAWRDAWVRDGRFQPEYVPGGV-VSGRWATRGGGALQIPK-- 307 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G + VVAD +E RVLA ++G Sbjct: 308 ----------------------------VIRRAAMADPGWRFVVADAGQLEPRVLAAVSG 339 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + A A G+ R K+ L Y Sbjct: 340 DARLAAAGATGDLYQALARDAFGG---------DRGRAKLALLGAMYGQTGG-------- 382 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 ++ A + + +G C Sbjct: 383 --------EAVPALAGVRGNYPTAFGYVEAAARTGEAGGLVRSWLGRTCP 424 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/211 (9%), Positives = 48/211 (22%), Gaps = 22/211 (10%) Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 A + + + + ++ + + + G Sbjct: 324 ADAGQLEPRVLAAVSGDARLAAAGATGDLYQALARDAFGGDRGRAKLALLGAMYGQTGGE 383 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 R + E A + GG + + P D + Sbjct: 384 AVPALAGVRGNYPTAFGY----VEAAARTGEAGGLVRSWLGRTCPP-GSAGFATDEGVAD 438 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI--LCEGMKNATKN 620 P D + + + + R ++QA + + + Sbjct: 439 PD----AAGDPQSPRARAARSRGRFTR---------NFVIQATAAEWASTLLAVLRGELA 485 Query: 621 G--YDIVLTVHDEIVSETPDTPYFSVGTLCS 649 G ++V HDE++ P V Sbjct: 486 GTEAELVFFQHDEVIVHCPAEQAERVAEAVQ 516 >gi|162147898|ref|YP_001602359.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] gi|161786475|emb|CAP56057.1| putative ribonuclease D [Gluconacetobacter diazotrophicus PAl 5] Length = 210 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 38/204 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D E +G+ + + + L + D L + P +L + + D Sbjct: 26 IAVDTE--------AMGLNPHRD--RLCLVQISAGDGSAHLVQILPGTPSP-NLARLMAD 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 ++ + H + F+ + + +LG+ + ICT + ++ L C L Sbjct: 75 PSITKLMHFARFDVAILQHSLGVTVAP--VICTKIASKLVRTFTERHGLAQLCREL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L + +P + Y DV L+ +L L Sbjct: 129 ------LGVDLSKQQQTSDWGAPELTPEQ----------KAYAASDVLHLHALWTKLEVL 172 Query: 181 SDGE--RDLWLLDQTINDRGYRID 202 E RDL R+D Sbjct: 173 LHREGRRDLAQACYDFLPTRARLD 196 >gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74] Length = 565 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 89/293 (30%), Gaps = 65/293 (22%) Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L E++ + +R LR F +G+ L L+ + A Sbjct: 219 RRLAELTEEVSRAFGRHVRPDLPADVLRA--FAESGVKLTSTRRWELEKV------GHPA 270 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L +GR R GA +GRW+ +P+ Sbjct: 271 VAPLLAYKKLYRVWTAHGWGWLADWVREGRFRPRYVVGGA-VSGRWTTAGGGALQIPK-- 327 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR ++A G +LVVAD A +E R+LA +AG Sbjct: 328 ----------------------------VVRRAVVADPGWRLVVADAAQMEPRILAAVAG 359 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK-VFKTMAS 453 + + A +D+Y +AF D K+ L Y + K +A+ Sbjct: 360 DAGLLDVAAKADDLYAAVSDRAFAGDRD--------RAKIAVLGAIYGQTSGDGLKNLAA 411 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + +A ++ E + +G C V Sbjct: 412 L-----------------RRRFPKAVAYVDEAARAGEEGRLVRTWLGRTCPPV 447 >gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2] gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2] Length = 204 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 54/210 (25%), Gaps = 37/210 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L + L D Sbjct: 20 VAIDTETLGLNP----------HRDRLCVVQLSNGDGSADVVQIPAGHTDAPNLKKLLGD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + + H + F+ + G+ CT + ++ LK+ + E Sbjct: 70 PAITKLFHFARFDIAVLYHAFGVMAQP--VYCTKIASKLVRTYTDRHGLKDLVREMLGVE 127 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K S + + Y DV L +L + Sbjct: 128 IS--------------KQQQSSDWGAASLSEAQL------SYAASDVLHLHALRDKLDAM 167 Query: 181 SDGERDLWLLDQTINDRGY--RIDLDLVLK 208 E L R+DL + Sbjct: 168 LAREDREPLAKACFEFLPTRARLDLQGWEE 197 >gi|294675670|ref|YP_003576285.1| ribonuclease D [Rhodobacter capsulatus SB 1003] gi|294474490|gb|ADE83878.1| ribonuclease D-1 [Rhodobacter capsulatus SB 1003] Length = 204 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 57/216 (26%), Gaps = 37/216 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + L + D L + L L D Sbjct: 20 VAIDTET--------MGLDPRRD--RLCLVQMSSGDGHAHLVQIAKGQTEAPRLCAMLAD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120 V + H + F+ G+ CT + + RT LK L Sbjct: 70 PKVEKLFHFARFDIAALYNAFGVVTAP--VFCTKIASKMVRTFTDRHGLKYLLQDL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G S + + +Y DV +L L+ Sbjct: 124 ----------------VGVDVSKQQQTSDWGAAELTAAQLDYAASDVLYLHQLKAALVTR 167 Query: 181 SDGE--RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E +L R+DL + ++ Sbjct: 168 LAREGRTELAQACFDFLPARARLDLMGWEEPNDIFH 203 >gi|108757261|ref|YP_629462.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622] gi|108461141|gb|ABF86326.1| hypothetical protein MXAN_1203 [Myxococcus xanthus DK 1622] Length = 669 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 74/712 (10%), Positives = 154/712 (21%), Gaps = 133/712 (18%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQ 59 M+ D ET L + G+ A + + A +L D+ + + Sbjct: 1 MNVWSFDTETW----LIQPGLLA----PPLVCGSIAAAAPGSERLLDKAQARQF---FRE 49 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPS-------KRWICTSVLARTNGLPSSLKNA 112 + V N ++ + + R C + + L Sbjct: 50 AIAASDTRLVGANLAYDLGVMAADDPSLVAPIFAALEAGRLHCVQIREALIDIARGL--- 106 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 G+ L D A VQ + + Sbjct: 107 ---YGVDPS-----TGRKL--------DDDEGARYPLALLVQRYLGLDISEDKKNPKAWR 150 Query: 173 L-FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL---- 227 L + L + D Y +D+ + L + ++ Sbjct: 151 LRYAELDGVPVERWPTEAAAYPKRDARYTLDVFFRQEAVARETPNGGNLHAEAEQMRAAF 210 Query: 228 --TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 I R L + + + + ++ T+ +K + Sbjct: 211 ALHLASIWGLRTNGDSVAVLRERVEREWGENRAKFQAAGIYRADGTKDSKR-------LA 263 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + R R ++L + R ++ + + Sbjct: 264 ALVTAAYDGQPPITAPSDRFPD--GQVATDRDTLLGSGDALLEDLGKSGRVDKYKSTYLD 321 Query: 346 ALNRGETIADPLG-----------------LASDCVRSCIIASNGKKLVVADLAGIEARV 388 + G ++ +R A G D G+E R Sbjct: 322 VVEAGTSLPINPRFNVLVSTTRVSSDYQQLPQKGGIREVHEARPGFAYCSVDYGGLELRT 381 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +A A + K+++ + V LA Sbjct: 382 MAQRA----------------------IWELGYSKMAEALNSGLDVHTLA--------AA 411 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + + L + F + + + + Sbjct: 412 EFLGASYDELLPKVKAKDPLAVAFRQLAKILNFGKGGGMTGGSLVYNARAKDRVSFCLLA 471 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + V ++ + V L + R Sbjct: 472 K--------RADVCGIERIVITVQRKPKMVCRACVEVAKELDTKWLNAWPEQRELQQRAK 523 Query: 569 V--YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 Y D + T ++ Q + M ++ Sbjct: 524 SSTYGGGFADVMIPGANILRGGCGYT---QILNTPFQGLGAVGCKLAMWRVSREMYVDRR 580 Query: 621 ----GYDIVLTVHDEIVSETPDTPY----FSVGT----LCSLM-TKNPSWAK 659 G +VL VHDE++SE P + + M P A Sbjct: 581 SPLYGSRLVLMVHDELISELPANSAQRMHDAAERKAYLMREAMKETTPDLAP 632 >gi|47934812|gb|AAT39844.1| DNA polymerase [Uncultured T7-like podovirus] Length = 199 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKXIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|167600469|ref|YP_001671968.1| hypothetical protein PPLUZ19_gp24 [Pseudomonas phage LUZ19] gi|161168332|emb|CAP45496.1| hypothetical protein [Pseudomonas phage LUZ19] Length = 348 Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 29/196 (14%) Query: 2 SKLFIDIETR------SPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQSAMP 54 L +DIET VG+ I W + V D + + Sbjct: 94 KVLSLDIETSPIEGWVWSLWKQNVGLNQIKRDWTILSFCAKWMHSDEVIYMDC-QGDPLD 152 Query: 55 S-----DLLQYLRDETVMCVAHNSL-FER-ILFKKTLGIDIPSKR---WICTSVLARTNG 104 L + L + ++ V N F+ + + +P R I T ++A+ Sbjct: 153 DMHLLVALHKLLDEADIIIV-QNGKRFDVPKINARFFLNKMPPPRPFKVIDTLIIAKQQF 211 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +S K + K K L +F D ++ +AW+ Y Sbjct: 212 AFTSRKL--EYMTHKACTIK----KRLHGKF--PGFDLW--AACLQDNPEAWEEMRLYNI 261 Query: 165 RDVEATRELFKRLIPL 180 DV + EL+ + P Sbjct: 262 DDVRSMEELYILMRPW 277 >gi|254470791|ref|ZP_05084194.1| 3'-5' exonuclease [Pseudovibrio sp. JE062] gi|211959933|gb|EEA95130.1| 3'-5' exonuclease [Pseudovibrio sp. JE062] Length = 206 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 54/186 (29%), Gaps = 35/186 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P + + + + D + +L D Sbjct: 22 VAVDTETLGLNP----------HRDRLCVVQLSSGDGSADVVQIERGQLAAPNLQALFED 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 + + H + F+ + K+ L I + CT + ++ LK+ C L Sbjct: 72 ASKPKIFHFARFDVAILKEYLDISVSP--VWCTKIASKLVRTYTDRHGLKDICREL---- 125 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L K S + A Y DV +L +RL + Sbjct: 126 ------IGVDL----SKQQQSSDWAAEKLTDAQLA------YAASDVLHLHKLKERLEFM 169 Query: 181 SDGERD 186 + E Sbjct: 170 LEREER 175 >gi|83944937|ref|ZP_00957303.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633] gi|83851719|gb|EAP89574.1| Ribonuclease D [Oceanicaulis alexandrii HTCC2633] Length = 204 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 42/222 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ++ ID ET+ L + G+ L + D + + +L L Sbjct: 18 KRVAIDTETQGL-SLVRDGLC---------LVQLSAGDGEAHIVQPDRATYDCPNLKALL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D V + H + F+ + ++ LG+ + CT + ++ LK+ C Sbjct: 68 ADTGVEKLLHFARFDLAIIERDLGVTM--TPVFCTKIASKLVRTYTDRHGLKDVCR---- 121 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G L + + + Y DV + L Sbjct: 122 ------EIAGVELSKQ----------QQSSDWAAQDLSEAQLNYAASDVLYLHAIADGLT 165 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + E + D +L+ + + Sbjct: 166 AMLEREGR-------MEMARACFDFLPSRARLDLMGWDETDI 200 >gi|325063515|gb|ADY67205.1| Ribonuclease D [Agrobacterium sp. H13-3] Length = 208 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 50/203 (24%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLTHMLAD 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + H F+ + T G+ + CT + +R Sbjct: 74 PARQKIFHYGRFDIAVLFHTFGVT--TTPVFCTKIASRL-----------------TRTY 114 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G + S + + EY DV L +L Sbjct: 115 TDRHGLKDNLKEMLEVDISKAQQSSDWAAEKLSPAQLEYAASDVLHLHALRDKLTHRLVR 174 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 + L D R LDL+ Sbjct: 175 DGRLDHADACFAFLPTRAKLDLL 197 >gi|148260666|ref|YP_001234793.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] gi|146402347|gb|ABQ30874.1| 3'-5' exonuclease [Acidiphilium cryptum JF-5] Length = 218 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 40/211 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPS--DLL 58 + +D ET +G+ + + L + D V++ +L Sbjct: 29 VAVDTET--------MGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCPNLK 78 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA 115 + L V + H + F+ + LG+ ICT + ++ LK+ C Sbjct: 79 RLLEHPGVTKLFHFARFDLAMLHHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCRD 136 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L G S + + Y DV ++ Sbjct: 137 L--------------------VGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWA 176 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 RL L E L D R LDL+ Sbjct: 177 RLEALLVREGRRELADACYRFLPARAKLDLL 207 >gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 529 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 32/219 (14%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + ++ + + ++ + L V+ + HN R +F I+ Sbjct: 327 LSLSYSESNIFYIEQDSIQDALIIINLTLLSNGVLKIIHNIKEIRKIF---PAIEKMLDS 383 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +++ + GK + + + + Sbjct: 384 VDDLMIMSYSLD----------------------TGKHDHSIPNIVAHNLSENAEIFSAK 421 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + E +++R L + + G +++ + +L + Sbjct: 422 TLIAIHEKLKQRLFQEKLLTIYERFDK------PLMKVIFDMEKNGILLNIQKLQELSDK 475 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 Q L+++I L G + L LF G+ Sbjct: 476 FQQVIAVLEDEIYNLA-GERFNIASPKQLSDVLFNKMGL 513 >gi|307943000|ref|ZP_07658345.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4] gi|307773796|gb|EFO33012.1| 3'-5' exonuclease [Roseibium sp. TrichSKD4] Length = 206 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET L + + + D + + +L L D Sbjct: 22 VAVDTETLGLNLLRD----------RLCVVQLSPGDGSADVVQIEKGMTAAPNLTALLSD 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + H + F+ + ++ LGI + CT + ++ Sbjct: 72 PARTKIFHYARFDVAILRQNLGIHVDP--VWCTKIASKLC-----------------RTY 112 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I R G S + Q Y DV L ++L + Sbjct: 113 TDRHGLKDITRELLGVDISKQQQSSDWAAEQLTDAQLAYAASDVLHLHALKEKLEFMLRR 172 Query: 184 ERDLWLLDQTINDRGYR 200 E L + + R Sbjct: 173 EERTHLAEASFGFLPTR 189 >gi|47934624|gb|AAT39750.1| DNA polymerase [Uncultured T7-like podovirus] Length = 198 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 51/225 (22%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPSLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 196 >gi|240849913|ref|YP_002971302.1| 3'-5' exonuclease [Bartonella grahamii as4aup] gi|240267036|gb|ACS50624.1| 3'-5' exonuclease [Bartonella grahamii as4aup] Length = 206 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D + ++ +L++ L D Sbjct: 22 IAIDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQISKGQKSAPNLVKLLGD 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLAL 116 V+ + H F+ + T G + + CT + + RT LK C L Sbjct: 72 NAVIKIFHFGRFDLAILAHTFG--VMPEAIFCTKIASKLTRTYTDRHGLKEICNEL 125 >gi|148807493|gb|ABR13551.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L G+ +E + +L +I + LI L A Sbjct: 47 FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA 103 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++++ DGR+ G + GA TGR + +P Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|148807507|gb|ABR13557.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 67.4 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTKKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|195970213|ref|NP_384368.2| hypothetical protein SMc00342 [Sinorhizobium meliloti 1021] gi|307306427|ref|ZP_07586171.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C] gi|307319314|ref|ZP_07598743.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83] gi|187904130|emb|CAC41699.2| Probable ribonuclease D [Sinorhizobium meliloti 1021] gi|306895150|gb|EFN25907.1| 3'-5' exonuclease [Sinorhizobium meliloti AK83] gi|306902269|gb|EFN32866.1| 3'-5' exonuclease [Sinorhizobium meliloti BL225C] Length = 208 Score = 67.4 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 37/211 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + + +L+ L D Sbjct: 24 IAIDTETLGLVP----------RRDRLCVVQLSSGDGTADVIRISAGQKQAPNLVSMLAD 73 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 T + H F+ + T G+ CT + +R LK+ Sbjct: 74 PTRQKIFHFGRFDIAVLFHTFGVTASP--VFCTKIASRLARTYTDRHGLKD--------- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L A+ + QL EY DV L +L Sbjct: 123 ---------NLKELLDIDISKQQQSSDWAADILSPAQL--EYAASDVLHLHALRDKLTAR 171 Query: 181 S--DGERDLWLLDQTINDRGYRIDLDLVLKL 209 DG +L + ++DL + Sbjct: 172 LLRDGRMELAEACFSFLPTRAKLDLLGWEEA 202 >gi|326403860|ref|YP_004283942.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] gi|325050722|dbj|BAJ81060.1| 3'-5' exonuclease [Acidiphilium multivorum AIU301] Length = 218 Score = 67.4 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 61/211 (28%), Gaps = 40/211 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPS--DLL 58 + +D ET +G+ + + L + D V++ +L Sbjct: 29 VAVDTET--------MGLDPRRD--RLCLVQLSAGDNSAHLVQIVPPALGGRGADCPNLK 78 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLA 115 + L V + H + F+ + LG+ ICT + ++ LK+ C Sbjct: 79 RLLEHPGVTKLFHFARFDLAMLYHALGVTTAP--VICTKIASKLVRTYTDRHGLKDLCRD 136 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L G S + + Y DV ++ Sbjct: 137 L--------------------VGIEISKQQQTSDWGSAELSPEQCAYAASDVLHLHAIWA 176 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 RL L E L D R LDL+ Sbjct: 177 RLEALLVREGRRELADACYRFLPARAKLDLL 207 >gi|329847152|ref|ZP_08262180.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19] gi|328842215|gb|EGF91784.1| 3'-5' exonuclease family protein [Asticcacaulis biprosthecum C19] Length = 206 Score = 67.4 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 35/206 (16%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET +G+ + + + + D + + +L L Sbjct: 18 KSIALDSET--------MGLRFGRDD--LCVVQLSAGDGHAHVVRLNRPAYDCPNLKALL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D +V+ + H F+ +F LG+D CT + ++ LK+ L Sbjct: 68 VDPSVLKLFHYGRFDIGMFALHLGVDTSP--VYCTKIASKLARTYTDRHGLKDLSREL-- 123 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G S + Y DV L +L Sbjct: 124 ------------------VGVDMSKAQQSSDWGAATLTPEQLAYAASDVLHLHALKDKLD 165 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLD 204 + E L + R+ LD Sbjct: 166 AMLAREGRSALAQACFDFLPQRVKLD 191 >gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421] gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421] Length = 208 Score = 67.4 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 34/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D E +G+ + + + L + V L + S L + L Sbjct: 26 LAVDSE--------AMGLLPHRD--RLCLVQLCDEAGLVSLVRLSAGLTQASQLQKVLEA 75 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKNACLALNFSE 120 V+ + H + F+ + + LGI + +CT V + RT LK+ Sbjct: 76 PAVIKLFHYARFDVAMLRHHLGIRVQP--IVCTKVASKLARTYSPRHGLKDLV----LET 129 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 ++ D ++ + Y DV +++L + Sbjct: 130 VGVEL---------------DKSAQSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETM 174 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E L + ++DLDL+ Sbjct: 175 LRREGRFELARRCFAHLETQVDLDLL 200 >gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101] gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101] Length = 204 Score = 67.0 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 35/201 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + ID ET +G+ + + + + + D L + +L L Sbjct: 19 IVAIDCET--------MGLHPHRD--RLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLE 68 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119 D V+ + H F+ + G CT + +R L C L + Sbjct: 69 DPEVLKLFHFGRFDIAAMQNAFGAKTAP--VYCTKIASRLVRTFTDRHGLAKLCQELLGT 126 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + K S Y DV +L +L Sbjct: 127 DIS--------------KQQQSSDWGAAQLTQAQID------YAASDVLYLHQLRDKLNA 166 Query: 180 LSDGERDLWLLDQTINDRGYR 200 + E + + + R Sbjct: 167 MLIREDRMDIAQACFDFLPMR 187 >gi|148807502|gb|ABR13555.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 67.0 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L G+ +E + +L +I + LI L A Sbjct: 47 FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA 103 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++++ DGR+ G + GA TGR + +P Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|148807536|gb|ABR13571.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 67.0 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 40/206 (19%) Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII-------RSSRQTYALRMYLFLITGIDLVD 255 + ++ E + + + E+ G + + L G+ Sbjct: 10 THKMRQITEQLQKVLPPIVEERWSEKTGKRLKDKVTEFNVGSRKQIAERL-EGVGVKFKQ 68 Query: 256 MSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 +E + +L +I + LI L A ++++ DGR+ G + Sbjct: 69 KTEKGAIIVNEKVLEGIDIPE--AKLIYEYLMLQKRA-AQIDSWLTH-EKDGRVHGRVIT 124 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA TGR + +P RS Sbjct: 125 NGA-VTGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVP 160 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDW 397 G KL+ D +G+E R+LA ++ Sbjct: 161 EGHKLIGCDASGLELRMLAHYMRDER 186 >gi|302840032|ref|XP_002951572.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis] gi|300263181|gb|EFJ47383.1| hypothetical protein VOLCADRAFT_92017 [Volvox carteri f. nagariensis] Length = 1461 Score = 67.0 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 8/84 (9%) Query: 41 PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 + + + ++ DE+V V HN F+R + + +GI T +A Sbjct: 744 DGRYVRLKPHHPILDEFKRFFEDESVKKVWHNYGFDRHVLEN-MGICCAGFG-GDTLHMA 801 Query: 101 RTNGLPSS------LKNACLALNF 118 R S L N N Sbjct: 802 RLADASRSGRRTYGLDNLTADHNI 825 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 34/119 (28%), Gaps = 14/119 (11%) Query: 282 LASSGSAILKLNTLSEAVSSDGR--LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 L S ++ + + R R + TGR S Sbjct: 1353 LQSDATSTTTVLPNPPGRDTPSRAVHRVHCSLNINTETGRLSARR----------HVCCE 1402 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASN--GKKLVVADLAGIEARVLAWIAGED 396 + I A+ L VR A G LVVAD +E R+LA + Sbjct: 1403 MRLHISAVVPNLQNQPALEKDRYKVRRAFTADTEGGNTLVVADYGQLELRILAHMTNCQ 1461 >gi|312114054|ref|YP_004011650.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100] gi|311219183|gb|ADP70551.1| 3'-5' exonuclease [Rhodomicrobium vannielii ATCC 17100] Length = 204 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 15/116 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D L + +L L + Sbjct: 20 VAIDTET--------LGLKPHRD--RLCVVQLSAGDGNAHLVQFEKGHYDAPNLTALLVN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLAL 116 V+ + H F+ + ++ LG + + CT + A+ LK+ C L Sbjct: 70 PAVLKIFHFGRFDIAVMQQYLG--VKTGPVYCTKIAAKLVRTFTERHGLKDLCREL 123 >gi|302840030|ref|XP_002951571.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis] gi|300263180|gb|EFJ47382.1| hypothetical protein VOLCADRAFT_92016 [Volvox carteri f. nagariensis] Length = 1758 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 19/226 (8%), Positives = 44/226 (19%), Gaps = 78/226 (34%) Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 G ++ + + + AV K + W Sbjct: 38 YLEWEGQGEPDKPLVKDKYASERRKAKVLNFSIAYGKTAHGLAVDFKTTKEEAQETVDKW 97 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + + + R Sbjct: 98 YSDRWE----------------------------------------EFKVRTLLGRTRPL 117 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI----------------SRDILCEGM 614 ++ L+ +++ +Q + Sbjct: 118 PNISSPDFRLSGHSNRA---------AINTPIQGSAADVAAAAMVAIHKSEA-------- 160 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAK 659 G+ +++ +HDE++ E P L LM WA+ Sbjct: 161 --LRATGFKLLMQIHDEVILEGPRDRSEDAKRLVMELMANP--WAE 202 >gi|294085087|ref|YP_003551847.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664662|gb|ADE39763.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Candidatus Puniceispirillum marinum IMCC1322] Length = 418 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 60/476 (12%), Positives = 104/476 (21%), Gaps = 117/476 (24%) Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 + RG ID + +++ ++ L E G+ L + Sbjct: 20 RYVATVALMEHRGVPIDTTTLGLMRDNWHDFKQALIEK-TDQAYGVYDKGSFRVHLFEHY 78 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 I ++ G L+ + L + + + V DGR Sbjct: 79 LGAENIAWPRLASGELQLDRDTFKMMALRHPQLAELRELRKTLAEMRE-IKLTVGRDGRN 137 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 R L + + N P + + R Sbjct: 138 RTLLSPFNSKTGR----------NQPSTTK--------------------FIFGLPAWAR 167 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 S I G L D + E + A ++G+D +A Sbjct: 168 SLIKPEPGTALAYLDFSSQEIAIAACLSGDDALWQA------------------------ 203 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 Y G + A GL +S D + + Sbjct: 204 ---------------YASGDP-YIQFAIDAGLA--PVGATKESHKAERDACKVIMLGVQY 245 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 K L E + + + + L W+ G + Sbjct: 246 GMSAYGMGQKASLHVLEAEDLLQRHKDVY---LTFWRWAERNV-NAGLAGVELHTVFGWK 301 Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAI 605 + R K + +QA Sbjct: 302 IRAGKGRDVKENTF--------------------------------------LNWPMQAN 323 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKG 660 ++L + + VHD I+ E P V M K W G Sbjct: 324 GAEMLRLAYIALEEESIVMCAPVHDAILIEAPLDAIDQHVERATHEMQKASGWVLG 379 >gi|148807571|gb|ABR13586.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEEVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|296115075|ref|ZP_06833717.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769] gi|295978412|gb|EFG85148.1| 3'-5' exonuclease [Gluconacetobacter hansenii ATCC 23769] Length = 215 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 39/207 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS--DLLQYL 61 + +D ET +G+ + + + L + D L + ++L L Sbjct: 27 VAVDTET--------MGLNPHRD--RLCLVQLSDGDGHAHLVQVPAGATAADFPNMLAVL 76 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D +V + H + F+ + + T GI + ICT + ++ L + C L Sbjct: 77 TDPSVTKLMHFARFDVAILQYTFGITVAPC--ICTKIASKLVRTYTERHGLAHLCREL-- 132 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G S + Y DV L+ RL Sbjct: 133 ------------------LGVELSKQQQSSDWGAPDLTPEQMTYAASDVLYLHALWARLE 174 Query: 179 PLSDGE--RDLWLLDQTINDRGYRIDL 203 L E R+L R+D+ Sbjct: 175 ALLVREGRRELAQACYDFMPTRARLDI 201 >gi|148807495|gb|ABR13552.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 33/169 (19%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L G+ +E + +L +I + I L A Sbjct: 47 FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKTIDEYLMLQKRA 103 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++++ DGR+ G + GA TGR + +P Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQIP----------------- 143 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|148807583|gb|ABR13592.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGATIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|149408172|ref|YP_001294606.1| hypothetical protein ORF013 [Pseudomonas phage PA11] Length = 624 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 49/521 (9%), Positives = 116/521 (22%), Gaps = 102/521 (19%) Query: 55 SDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLK 110 + + R+ ++ HN ++ ++ L I + + + T L+ L Sbjct: 35 DKMRSFFRNAKIIG-GHNIYRYDIPNIERLLDIKVE-CKLVDTLPLSWYLEPARKRHGLA 92 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF-GEYCKRDVEA 169 + E A+ + D + W+ Y + D Sbjct: 93 EWGEEFGVPKPKVDDWENLAVEEYIHRCEEDV---KINTKLWERQWKQLSKLYGEPDKVW 149 Query: 170 TRELFKRLIPLSDGE----------------------------------RDLWLLDQTIN 195 + E + + Sbjct: 150 KFIDYIMFKMDCAAEQERSRWKLDVVHCKTTLKKLEKLKEEKVEELRLAMPHVPVMASKE 209 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDED---------IVKLTDGIIRSSRQTYALRMYLF 246 + L E L+E + + D + ++ +L+ Sbjct: 210 KPKKMYLKNKPNTLSEQGKAWVALLEEQGLPEDYEGVVEYIKDWKEPNPGSHEQIKSWLY 269 Query: 247 LITGIDLV---DMSEGT--LKSILSHSNITQLAKDLILNRLASSGSAIL--KLNTLSEAV 299 + + ++ T +K I L L + KL L Sbjct: 270 SLGWVPETFAYKRNKETGEVKKIEQVQQDKTLGPGLCA---SVKKLYGKEPKLEILDGLS 326 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ-ALNRGETIADPLG 358 R+ G + + + + LT T++ + Sbjct: 327 ILTHRISVLN------------GFLNNVDDEGYVQAKVQGLTNTLRFKHEVVVNLPGVDK 374 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R C++A G +LV +D++ +E R + Sbjct: 375 PYGADIRGCLVAPKGYELVGSDMSSLEDRCKQHYM------------WPYDPEYVKEMIK 422 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 D A + + ++ Sbjct: 423 PDFDPHLDLAVF--------------AGALSSHEVELYKAGFLKKEEEGLVKAIRKVYKS 468 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ P A+ + + A+ ++ V + Sbjct: 469 VNYACVYGAGGPRVAITAGVTMDEGYKLVDAYWQRNWSVKR 509 >gi|49475064|ref|YP_033105.1| ribonuclease d [Bartonella henselae str. Houston-1] gi|49237869|emb|CAF27065.1| Ribonuclease d [Bartonella henselae str. Houston-1] Length = 206 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 29/203 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ + + + + + D + + +L++ L D Sbjct: 22 VAVDTET--------LGLQPHRD--RLCVVQLSSGDGTADVIQIAKGQKSAPNLVRLLSD 71 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + + H F+ + T G + CT + ++ + Sbjct: 72 RDITKIFHFGRFDLAILAHTFG--VMPDVVFCTKIASK-LTRTYT-----DRHGL----- 118 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K G+ L K S T + EY DV L Sbjct: 119 KEICGELLNVNISKQQQSSDWAAETLSRAQI------EYAASDVLYLHRLKDIFEERLKR 172 Query: 184 ERDLWLLDQTINDRGYRIDLDLV 206 E + R +LDL+ Sbjct: 173 EERESVAKACFQFLPMRANLDLL 195 >gi|297559551|ref|YP_003678525.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843999|gb|ADH66019.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 554 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 61/443 (13%), Positives = 98/443 (22%), Gaps = 158/443 (35%) Query: 217 RKKLDEDIVKLTDGIIRSSRQTYAL---RMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 L I + + + + ++ G + L+ I Sbjct: 211 LADLAARIGEAVGREV-NPDSPAQVLRAMAWI----GHPVDSTRSWVLERI------DHP 259 Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQF---YGASRTGRWSGCVF 325 L+L S +A DG G G +GRW+ Sbjct: 260 VVPLLLRYKELSRLHSANGWAWLDAWVRRRPGPDGTTLGRFHPDYVVGGVVSGRWATRGG 319 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 +PR +R + A G LV AD +E Sbjct: 320 GALQIPR------------------------------SLRGAVRADPGWVLVRADAGQLE 349 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA ++G+D A A + R K+ L+ Y + Sbjct: 350 PRVLAAVSGDDALAAAAAEEDLYARLAVH----------VGGDRDRAKIGMLSAMYGQTS 399 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + + +A + Sbjct: 400 G----------------DAAPLLATMRRLYPRALEYVDS--------------------- 422 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 A + GG + + P +P Sbjct: 423 ----------------------AARTGEGGGIVRSWLGRTSP--------------VPEG 446 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------ 619 S G+ R R G +VQA + + + Sbjct: 447 WDAAVSGPGGER-----------RRRAQGRFTRNFVVQATAAEW---ALVLLASLRQRLP 492 Query: 620 ---NGYDIVLTVHDEIVSETPDT 639 G IV VHDE+V P Sbjct: 493 DMPEGAGIVFFVHDEVVLHVPAD 515 >gi|163733026|ref|ZP_02140470.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis Och 149] gi|161393561|gb|EDQ17886.1| 3'- 5' exonuclease family protein, putative [Roseobacter litoralis Och 149] Length = 204 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 44/170 (25%), Gaps = 19/170 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D L + +L + L D Sbjct: 20 VAIDCET--------MGLHPHRD--RLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLLED 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEHL 122 V+ + H F+ G CT + +R + L Sbjct: 70 PNVLKLFHFGRFDIAAMLNAFGATAAP--VYCTKIASRLVRTYTDRHGLAKLLQELLNID 127 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + D+ L + TRE Sbjct: 128 I------SKQQQSSDWGADTLTDAQIDYAASDVLYLHQLREALNTMLTRE 171 >gi|126660170|ref|ZP_01731288.1| 3'-5' exonuclease [Cyanothece sp. CCY0110] gi|126618535|gb|EAZ89286.1| 3'-5' exonuclease [Cyanothece sp. CCY0110] Length = 214 Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 28/192 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P ++ + L V ++ +L + L + Sbjct: 32 IAIDTETMGLIP----------QRDRLCLVQLCDSSGYVTAIRIEKEQKEAPNLKKLLEN 81 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++++ + H + F+ FK GID CT V + S Sbjct: 82 QSIVKIFHYARFDVAQFKYNFGIDTAP--IFCTKVAS----------KLARTYTGSH--- 126 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 KAL+ +D N + Y DV L ++LI + Sbjct: 127 ---GLKALVQEIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLREQLITMLQR 183 Query: 184 ERDLWLLDQTIN 195 E + + +N Sbjct: 184 EERWEIAQKCMN 195 >gi|326536930|ref|YP_004306337.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A] gi|318054506|gb|ADV35682.1| DNA polymerase [Pseudomonas phage phiIBB-PF7A] Length = 712 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 75/273 (27%), Gaps = 74/273 (27%) Query: 46 DRTEQSAM---PSDLLQYL-------RDETVMCVAHN-SLFERILFKKTLG------IDI 88 D + P D+L Y+ + V HN ++ + ++I Sbjct: 26 DAFTGEVIEYRPDDVLAYIKALEAEAAKPDGLIVFHNGIKYDIPALDRMKRELTGKRLNI 85 Query: 89 PSKRWICTSVLARTNGL---------------------PSSLKNACLALNFSEHLTKMEE 127 P K+ + T V++R +L+ L + K Sbjct: 86 PRKKVLDTLVISRLIHANLKETDAGLLRRGIIPGKRYGSHALEAWGYRLGEMKGEYKD-- 143 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE----YCKRDVEATRELFKRLI----- 178 + D T W+ F E YC +DV T +L + L+ Sbjct: 144 ----------DFKAACREDGTEYVDGMEWEHFNEPMMAYCVQDVRVTTKLTRHLMQDPYY 193 Query: 179 -------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E D + G+ D +L +A ER L +V+ Sbjct: 194 FRDGQGIRALVLEHDAAWTLAQMERNGFPFHKDGAERLYMELAAERSDLLVRLVQTFGSW 253 Query: 232 IRSSRQTYALRMYLFLITGI-----DLVDMSEG 259 T L TG +V ++ Sbjct: 254 YEPKGGTEPF---LHPKTGKVLDKYPMVKTAKA 283 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 48/252 (19%), Gaps = 51/252 (20%) Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKD 276 + + + L + TL+ + Sbjct: 305 MYTPITHVTFQPTSRPNIIKVLKDAGWEPTEFTDKGAPIVDDETLEGVEVADENKMECIK 364 Query: 277 LILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LI L L + DG + G++ GA TGR + +P Sbjct: 365 LIQRYLMIQKRIGQLAEGDKAWLRYCETEDGFIHGSINPNGA-VTGRATHSYPNMGQVP- 422 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-----SNGK---KLVVADLAGI 384 RS A G D +G+ Sbjct: 423 ----------------------SAKAPFGPECRSLFGAIYARHIPGWENVVQAGVDASGL 460 Query: 385 EARVLAWIAG--------EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 E R L + + A + R K Sbjct: 461 ELRCLGHFGAKYDGGGYVDQVLNGDVHWANAVAAGIAKDAVRDKENHQHDRWRDNAKTFI 520 Query: 437 LALGYQGGAKVF 448 A Y G Sbjct: 521 YAFLYGAGDAKI 532 >gi|148807569|gb|ABR13585.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|68069867|ref|XP_676845.1| DNA polymerase 1 [Plasmodium berghei strain ANKA] gi|56496719|emb|CAH97694.1| DNA polymerase 1, putative [Plasmodium berghei] Length = 842 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 18/186 (9%) Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR-LRGTLQFYGASRTGRWSGC 323 + + I S + L + + + + + GAS TGR S Sbjct: 669 EKEKEKIKQIINNIKLYRESKKLFQNYIENLPKHIQKNTKKIHCNFNQLGAS-TGRLSCD 727 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+ + R L + + L+ D Sbjct: 728 QPNLQNIHSKFRCTISLKFNELKPTSIQKQDIKNKSVNKN------------LLTFDYKQ 775 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E V+A+++ ++ +K N + T ++V+KE R + K + + Y Sbjct: 776 MELFVMAYLSFDNQLLKMLNNSDVFVETKVL----FNTNEVTKELRRMTKTVIYGILYGQ 831 Query: 444 GAKVFK 449 Sbjct: 832 SENGLA 837 >gi|68171372|ref|ZP_00544766.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|88657845|ref|YP_507797.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str. Arkansas] gi|67772422|gb|AAY79412.1| ribonuclease D [Ehrlichia chaffeensis] gi|67999197|gb|EAM85853.1| 3'-5' exonuclease [Ehrlichia chaffeensis str. Sapulpa] gi|88599302|gb|ABD44771.1| 3'-5' exonuclease family protein [Ehrlichia chaffeensis str. Arkansas] Length = 204 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 26/180 (14%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + + +D ET + + + + + L P +L+ L Sbjct: 18 NTVAVDTET----------MGLVCRRDKLCVVQLCDSNGETHLVKFLGSYQAP-NLVSVL 66 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNF 118 D ++ + H + F+ + + LG+ + CT + ++ LK C Sbjct: 67 SDSSITKIFHFARFDIAVIRYYLGVW--ATPCYCTKIASKLVRTYTDHHGLKELC----- 119 Query: 119 SEHLTKMEEGK-ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 ++ K + + ++ + L K D RE + L Sbjct: 120 ----YELLNVKLNKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQEL 175 >gi|47934628|gb|AAT39752.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 32/169 (18%) Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285 I + + L G+ +E + +L ++ + + + Sbjct: 47 VTIFNPGSRKQIAERLQG-LGVTFKKKTEKGNIIVDEKVLDGIDLPE--AKAVARYMMLQ 103 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + ++++ +AV DGR+ G + GA TGR + +P Sbjct: 104 KR-VAQIDSWLKAVKDDGRVHGRVITNGA-VTGRMTHLSPNMAQVP-------------- 147 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 RSC G LV D +G+E R+LA Sbjct: 148 ---------AVSAPFGTECRSCWTVDEGNSLVGIDASGLELRMLAHYME 187 >gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506] gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506] Length = 210 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 58/204 (28%), Gaps = 28/204 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + D ET +G+ + + + L + V + + +L + + Sbjct: 25 IAADTET--------MGLLPWRD--RLCLVQLCDAEGIVTVVRIAKGQREAPNLKKLMEA 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 ++ + H + F+ K L I + C+ + + Sbjct: 75 SNIVKIFHFARFDMATLKYHLDIHVAP--VFCSKIAS----------KLARTYTGKH--- 119 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K L+ + +D N + Y DV ++LI + Sbjct: 120 ---GLKDLVQELEQVELDKTAQSSDWGNAANLSEKQLRYAANDVRYLISAREKLITMLQR 176 Query: 184 ERDLWLLDQTINDRGYRIDLDLVL 207 E L + + LDL+ Sbjct: 177 EDRWQLAQECFQCLPVIVSLDLLQ 200 >gi|88607131|ref|YP_505646.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ] gi|88598194|gb|ABD43664.1| 3''-5'' exonuclease family protein [Anaplasma phagocytophilum HZ] Length = 204 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 36/206 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET + + + L + + L + P +L + + D Sbjct: 20 VAVDTET----------MGLVCRRDRVCLVQLSAGNGDAHLVKFDGDYSAP-NLRKVISD 68 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H + F+ + G + + CT + +R LK+ C L Sbjct: 69 PGVLKIFHFARFDVAAIRH--GFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYEL---- 122 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G + + Y DV + K+L + Sbjct: 123 ----------------LGVKINKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMM 166 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + E L + R +LDL+ Sbjct: 167 LEREEKQELAEACFKFVPVRAELDLL 192 >gi|148807532|gb|ABR13569.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L ++ + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDVPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|148807489|gb|ABR13549.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 +++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDPWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|148807603|gb|ABR13601.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + ++I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+ A ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMPAHYMRDER 186 >gi|148807497|gb|ABR13553.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807509|gb|ABR13558.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807517|gb|ABR13562.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807522|gb|ABR13564.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807550|gb|ABR13577.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807573|gb|ABR13587.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807587|gb|ABR13594.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807591|gb|ABR13595.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807593|gb|ABR13596.1| DNA polymerase [Uncultured T7-like podovirus] gi|148807595|gb|ABR13597.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|110636308|ref|YP_676516.1| 3'-5' exonuclease [Mesorhizobium sp. BNC1] gi|110287292|gb|ABG65351.1| 3'-5' exonuclease [Chelativorans sp. BNC1] Length = 205 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 46/197 (23%), Gaps = 29/197 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET P + + + + D + +L+ LR+ Sbjct: 21 VAIDTETLGLNP----------HRDRLCVVQLSPGDGTADVVQIAAGQRRAPNLVALLRN 70 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + + H + F+ + + G + CT + +R Sbjct: 71 RRITKLFHYARFDIAVLYHSFG--VMPDPVFCTKIASRL-----------------TRTY 111 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G I S + Q EY DV L L Sbjct: 112 TDRHGLKDICYELLQVNLSKAQQSSDWAAEQLTPEQLEYAASDVLYLHRLADVLQQRLMR 171 Query: 184 ERDLWLLDQTINDRGYR 200 + R Sbjct: 172 DGRAREAQACFKFLPTR 188 >gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400] Length = 381 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 33/193 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 + D+E S + Y E + L +A + P L Sbjct: 29 IVACDLEADS--------MHHYQE--KVCLIQFAVPGYAAIVDPLAAPDISP--LAPLFA 76 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + + V H + ++ + G+++ T + + G + L Sbjct: 77 NAAIRKVFHGADYDIRSLHRDFGMEVN--NLFDTMIACQLLGE--------REFGLAAQL 126 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 K RF Y + EY +D EL +L + Sbjct: 127 RK---------RFGVELDKQ--YQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLE 175 Query: 183 GERDLWLLDQTIN 195 + +++ Sbjct: 176 AKGRRGWVEEECE 188 >gi|159030499|emb|CAO91403.1| rnd [Microcystis aeruginosa PCC 7806] Length = 209 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 55/215 (25%), Gaps = 37/215 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P + L V +L + + D Sbjct: 27 IAVDTETMGLIPGRD----------RLCLIQLCDPSGFVTAIRIFRGQTEAPNLKKVMED 76 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 E + V H + F+ +T GI CT + ++ LK+ L Sbjct: 77 ERIEKVFHFARFDVAQLSQTFGIATQP--IFCTKIASKLARTYTSSHGLKSLVQEL---- 130 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 EG L D N V Y DV + +LI + Sbjct: 131 ------EGIEL---------DKTAQSSDWGNAVNLTPKQLSYAANDVRYLLSVRDKLIVM 175 Query: 181 SDGERDLWLLDQTINDRGYRIDLD-LVLKLQELIA 214 E I + + +++ Sbjct: 176 MQREERWE--LAQKCFSCIPIFTALDLQQYKDIFE 208 >gi|47934814|gb|AAT39845.1| DNA polymerase [Uncultured T7-like podovirus] Length = 166 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 33/169 (19%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L + G+ +E + +L +I + I L A Sbjct: 15 FNVGSRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA 71 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++++ DGR+ G + GA TGR + +P Sbjct: 72 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 111 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 112 ------SVSAPYGKECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 154 >gi|84495963|ref|ZP_00994817.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84382731|gb|EAP98612.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 565 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 61/383 (15%), Positives = 111/383 (28%), Gaps = 79/383 (20%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH-LTKMEEGKALIARFCK 137 ++ GI + T S + ++ G + Sbjct: 94 VWAGAHGIPVA------TM-------PTPSGGDLFDFTGSDGIGPEELVRGDGHLR---- 136 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDR 197 + + + T ++ + E R + L R++ E L+ + + Sbjct: 137 -ADAASGWLETDERLLRWAEAALECAVRQRDRAESLGARIVGTIHSESAAALMCLELEEG 195 Query: 198 GYRIDLDLVLKLQELIA------------QERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 G +D ++ +L A R++ E + + R +R L Sbjct: 196 GLPVDRAVMERLIGEFAGPRAASEEAAAVARRERDAEVLRHVPGRESTDLRNPLQVRDML 255 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSSDGR 304 + G+D+ + + +L D +L + A L + V D R Sbjct: 256 AGV-GVDVPNTRKW----VLDAYRHVHPVVDALLAWRKAERIATTYGYRWLDQCVGPDDR 310 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 LRG + GR + NLP + Sbjct: 311 LRGGWTACDGAA-GRMTAEN-GLHNLP------------------------------AAL 338 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 RS + A G V ADL IE RVLA ++G+ +A + P+ Sbjct: 339 RSGVAAHPGHVFVRADLGQIEPRVLAVVSGDPAFAEATRADDLYA----------PVASR 388 Query: 425 SKEQRAIGKVMELALGYQGGAKV 447 R + K+ LA Y + Sbjct: 389 LGVDRPVAKIAVLAAMYGQRSGA 411 Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 18/147 (12%) Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 ++ A + + ++P+ R L G L+ A + R Sbjct: 424 PVAMGLLDRAYDTGVRGEPLRTFGGRLIPTGRFLA-QSPVGTNPALDAARGRFAR----- 477 Query: 595 GKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 I+Q + ++ G IVL +HDE++ P++ V L Sbjct: 478 ----NAIIQGAAAELFKAWAATVRALGTPMGAQIVLCLHDELLVHAPESRAAEVAALVDQ 533 Query: 651 -MTKNP-SWAKGLPLK--AEGYEAKRY 673 + WA G P++ A+ R+ Sbjct: 534 SLADASRRWAAGAPVRFVADTSIIARW 560 >gi|148807558|gb|ABR13581.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRLLAHYMRDER 186 >gi|148807554|gb|ABR13579.1| DNA polymerase [Uncultured T7-like podovirus] Length = 189 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + ++I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|163757673|ref|ZP_02164762.1| putative ribonuclease [Hoeflea phototrophica DFL-43] gi|162285175|gb|EDQ35457.1| putative ribonuclease [Hoeflea phototrophica DFL-43] Length = 207 Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 48/207 (23%), Gaps = 31/207 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P + + + + D + + +L+ L D Sbjct: 23 IAVDTETLGLVP----------RRDRLCVVQLSPGDGSADVIQIAKGQKRAPNLVALLTD 72 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + H F+ + G+ CT + +R Sbjct: 73 RKRRKLFHYGRFDIAVLYNAFGVTTEP--VFCTKIASRL-----------------TRTY 113 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 G + R S + EY DV L +L Sbjct: 114 TDRHGLKDVTRELLEVDLSKQQQSSDWAAETLTPAQLEYAASDVLHLHALTAKLTERLQR 173 Query: 184 ERDLWLLDQTINDRGYR--IDLDLVLK 208 + R +DL + Sbjct: 174 DDREAHAKACFEFLPTRAKLDLMGWEE 200 >gi|148807597|gb|ABR13598.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 38/205 (18%) Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGII-------RSSRQTYALRMYLF---LITGID 252 + ++ E + + + E+ G + + L + + Sbjct: 10 THKMRQITEQLQKVFPPIAEERWSEKTGKRLKDKVTEFNVGSRKQIAERLEGVGVKFKLQ 69 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + + +L +I + +I L A ++++ DGR+ G + Sbjct: 70 TEKGAIIVNEKVLEGIDIPE--AKMIYEYLMLQKRA-AQIDSWLTH-EKDGRVHGRVITN 125 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 GA TGR + +P RS Sbjct: 126 GA-VTGRMTHHSPNLAQVP-----------------------SVSAPYGRECRSFWCVPE 161 Query: 373 GKKLVVADLAGIEARVLAWIAGEDW 397 G KL+ D +G+E R+LA ++ Sbjct: 162 GHKLIGCDASGLELRMLAHYMRDER 186 >gi|47934634|gb|AAT39755.1| DNA polymerase [Uncultured T7-like podovirus] Length = 208 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 51/237 (21%) Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD------------------GIIRSSR 236 G+ +D++ L + I + +++ E + K+ + Sbjct: 1 ERNGFMLDVEQATLLWQDITHKMRQITEQLQKVFPPIVEERWSEKTGKRLKDKVTEFNVG 60 Query: 237 QTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L + G+ +E + +L +I + I L A ++ Sbjct: 61 SRKQIAERLVGV-GVKFKQKTEKGAVIVNEKVLEGIDIPE--AKTIYEYLMLQKRA-AQI 116 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ DGR+ G + GA TGR + +P Sbjct: 117 DSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP--------------------- 153 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 RS G KL+ +G+E R+LA ++ + Sbjct: 154 --SVSAPYGKECRSFWCVPEGHKLIGCGASGLELRMLAHYMRDERYTNEILMRRHPH 208 >gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1] gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36] gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1] gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36] Length = 204 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 51/200 (25%), Gaps = 35/200 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + ID ET +G+ + + + + + D L + +L L D Sbjct: 20 VAIDCET--------MGLHPHRD--RLCVVQLSGGDGNAHLVQIAKGQTEAPNLCALLED 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 V+ + H F+ T G CT + +R L C L Sbjct: 70 PHVLKLFHYGRFDIAALLNTFGAKAAP--VYCTKIASRLVRTYTDRHGLAKLCQEL---- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L K S T Y DV +L L + Sbjct: 124 ----------LSVDISKQQQSSDWGAETLTKAQID------YAASDVLHLHKLRDVLNQM 167 Query: 181 SDGERDLWLLDQTINDRGYR 200 E + L R Sbjct: 168 LIREGRIELAQACFEFLPTR 187 >gi|15895183|ref|NP_348532.1| ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|15024889|gb|AAK79872.1|AE007698_6 Ribonuclease D [Clostridium acetobutylicum ATCC 824] gi|325509325|gb|ADZ20961.1| Ribonuclease D [Clostridium acetobutylicum EA 2018] Length = 205 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 27/196 (13%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + ID ET PL + L E + L + +L+ L Sbjct: 24 KYIAIDTETTGLDPLKD----------KLCLIQIC-AKEKIFLIKYNNSNQ--KNLIGIL 70 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNAC-LALN 117 + ++ + H++ F+ K L I +CT + A+ + +SLK LN Sbjct: 71 QCSKIIKIFHHANFDLRFLMKNLKIY-NINNVVCTKIAAKLLNGIEIENSLKKLLRKYLN 129 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + K L S ++ + + L + E + L Sbjct: 130 INID-------KKLQK--SNWSAENLTKEQIQYATYDVIYLEKLWRALKAELIKANLYSL 180 Query: 178 IPLSDGERDLWLLDQT 193 + Sbjct: 181 AEECFKYLPTNAILHN 196 >gi|148807548|gb|ABR13576.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 33/169 (19%) Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L G+ +E + +L +I + I L A Sbjct: 47 FNVGSRKQIAERL-EGVGVKFKQKTEKGAIIVNEKVLEGIDIPE--AKTIYEYLMLQKRA 103 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++++ DGR+ G + GA TGR + +P Sbjct: 104 -AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP----------------- 143 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 ------SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|254409855|ref|ZP_05023636.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420] gi|196183852|gb|EDX78835.1| 3'-5' exonuclease, putative [Microcoleus chthonoplastes PCC 7420] Length = 207 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 34/206 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET +G+ Y + L + V + ++ +L Q L Sbjct: 25 IAVDTET--------MGL-IYQRD-RLCLVQLCDPQDRVTVIRIDKKQTEAPNLKQLLEA 74 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSE 120 +TV+ V H + F+ + ++ L I + CT + ++ LK+ + L Sbjct: 75 QTVLKVFHFARFDLAILRQNLDIYVQP--VFCTKIASKLARTYTNRHGLKDLVMDL---- 128 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + ++ Y DV + ++LI + Sbjct: 129 ---------EQVELDKSSQSSDWGNPNNLSD------EQLRYAANDVRYLLSVRQKLITM 173 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 E L + + LDL+ Sbjct: 174 LQREERWQLAQECFEALSVMVSLDLL 199 >gi|196009946|ref|XP_002114838.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens] gi|190582900|gb|EDV22972.1| hypothetical protein TRIADDRAFT_58738 [Trichoplax adhaerens] Length = 628 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 82/293 (27%), Gaps = 54/293 (18%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 V+ + L + ++ RID +L+ Q + + + L++ + Sbjct: 276 VKICYDWQSCLYHMIRFYMKEIQ-TAVLDITPIRIDTELLRDYQPIFEAKLEALEKKAHQ 334 Query: 227 LTDGII---------------RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + I S + + LF +D Sbjct: 335 VYCIIFIKRLRQSILQISGYSFSLQSPKQIETILFEKLKLDQ------------------ 376 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L ++ + + + S S G Q +P Sbjct: 377 --VLKLNLVLKTKKKQSLSTSDEVLNKIKST------------SIDGILRLMKKNMQAIP 422 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + I+ + S R II LV D IE R+LA Sbjct: 423 KAMID----FGGIEDTKIFGENENETYKGSYSPRDMIITKKNYSLVSVDFQAIELRLLAH 478 Query: 392 IAGEDWKIKAFANGEDIYVTTYAK--AFNTPIDKVSKEQRAIGKVMELALGYQ 442 + + ++ F I + T+ FN ID +S+ + K + ++ Y Sbjct: 479 FSNDSMLLQIFNEHPTINIYTWLATFWFNKNIDDISQAEFDQAKEICYSILYG 531 >gi|315122172|ref|YP_004062661.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495574|gb|ADR52173.1| ribonuclease D [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 209 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 23/142 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET + + + + + D + + +L+ L + Sbjct: 23 IAVDTET----------LGLIPRRDRLCVVQLSPGDGTADIIRIAAEQKNAPNLVTMLAN 72 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART---NGLPSSL-KNACLALNFS 119 ET + H + F+ + T G+ + CT + +R L N L Sbjct: 73 ETQEKIFHYARFDIAVLFYTFGVRVKP--IFCTKIASRLTRTYIDRHGLKDNLRELLGVD 130 Query: 120 EHLT-------KMEEGKALIAR 134 + + + Sbjct: 131 ISKKQQLSDWSEDDLSHEQLQY 152 >gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501] gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501] Length = 214 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 28/201 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET P ++ + L V +L Q L + Sbjct: 32 LAIDTETMGLVP----------QRDRLCLVQLCDPSGYVTAIRIERGQTEAPNLKQLLEN 81 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + ++ + H + F+ FK + + CT V + S Sbjct: 82 KNIVKIFHYARFDVGQFK--YNFSVETDPIFCTKVAS----------KLARTYTGSH--- 126 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 K+L+ +D N + Y DV +L ++LI + Sbjct: 127 ---GLKSLVQELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKR 183 Query: 184 ERDLWLLDQTINDRGYRIDLD 204 E + + + ++LD Sbjct: 184 EERWEIAQKCMKVIPLFVELD 204 >gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001] gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001] Length = 224 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 56/204 (27%), Gaps = 34/204 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L +D E +G+ + + L D + V + L + + Sbjct: 36 LAVDTE--------AMGLIHGRD--RLCLVQICDDADNVCCIRLRRGQSSAPHLQALMEN 85 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV---LARTNGLPSSLKNACLALNFSE 120 + V H + F+ + LGI + CT + LART LK+ L Sbjct: 86 AAIEKVFHFARFDVAALAENLGIAVHP--IFCTKIGSRLARTYSPRHGLKDVVQEL---- 139 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 G L R + Y DV + RL + Sbjct: 140 ------VGVELDKRAQSS---------DWGEVDDLSEAQLAYAAGDVRYLLQARDRLERM 184 Query: 181 SDGERDLWLLDQTINDRGYRIDLD 204 E L + DLD Sbjct: 185 LRREERWELAQRCFTCLPVFADLD 208 >gi|148807491|gb|ABR13550.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L I + +I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIGIPE--AKMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >gi|168702958|ref|ZP_02735235.1| DNA polymerase I (PolI) [Gemmata obscuriglobus UQM 2246] Length = 203 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 34/133 (25%), Gaps = 26/133 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + +D ET P + L A + V L D + +DL Sbjct: 51 VAVDTETTGLDPARD----------RVRLIQVA-AGQDVALIDVFAFADPVADLRPLFAA 99 Query: 64 -ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP----------SSL-KN 111 V HN F+ + + T + +R L Sbjct: 100 LADKEQVGHNLQFDLRFLA---PFEFVPGKVFDTILASRVRHAGDRAESNGRFRHGLGDA 156 Query: 112 ACLALNFSEHLTK 124 A L S ++ Sbjct: 157 AARELGRSLDKSE 169 >gi|307105222|gb|EFN53472.1| hypothetical protein CHLNCDRAFT_136747 [Chlorella variabilis] Length = 911 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 28/174 (16%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 R + L + G D L+ + + +++E+ +L + Sbjct: 670 LAATRAVAALLAQMEGAGLGFDPWLLREAGRVARSHMSRIEEECAELAGRPF-NPASPQQ 728 Query: 241 LRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L L+ + + T + L L+L A + + Sbjct: 729 LAEVLYSVLKLPPPTGRGRSSAKTHLRTDEQALEALRPLSPLPGLVLEYRALQNFSSKWV 788 Query: 293 NT--------------LSEAVSSDG----RLRGTLQFYGASRTGRWSGCVFQPQ 328 A G R+ ++ TGR S Q Sbjct: 789 EADWCRAAAAGFESADAYAAARPGGGGWPRVHCCWHQT-STATGRLSSSAPNLQ 841 Score = 40.9 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 621 GYDIVLTVHDEIVSETPDTPYF---SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 G +V+ +HDE++ E L +M +PL + +++ Sbjct: 851 GAVLVVHLHDELLVEVDARQVDGAWVAQELRRVMEGVVQ--LRVPLAVKVKAGEQW 904 >gi|148807601|gb|ABR13600.1| DNA polymerase [Uncultured T7-like podovirus] Length = 190 Score = 65.9 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 31/168 (18%) Query: 233 RSSRQTYALRMYLF---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L + + + + +L +I + ++I L A Sbjct: 47 FNVGSRKQIAERLEGVGVKFKLQTEKGAIIVNEKVLEGIDIPE--AEMIYEYLMLQKRA- 103 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++++ DGR+ G + GA TGR + +P Sbjct: 104 AQIDSWLTH-EKDGRVHGRVITNGA-VTGRMTHHSPNLAQVP------------------ 143 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 RS G KL+ D +G+E R+LA ++ Sbjct: 144 -----SVSAPYGRECRSFWCVPEGHKLIGCDASGLELRMLAHYMRDER 186 >g