HHsearch alignment for GI: 254780128 and conserved domain: COG1591

>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair].
Probab=96.97  E-value=0.012  Score=37.98  Aligned_cols=76  Identities=28%  Similarity=0.282  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECCC--CCCCCEEEEECCCCCEEEEEEECCCC-C--CCHHHHHHH-HHHHHCCCEEE
Q ss_conf             999999999999997898999981188--89874399990698299999976898-8--688999999-99997898899
Q gi|254780128|r   10 TEKDVEKRLVTGAKKLDCWVRKASFVG--RRGCPDRLIITPNGGLWWIEVKKPTG-R--LSHQQMSEI-EELRRRGQRVK   83 (103)
Q Consensus        10 ~E~~ie~~l~~~lk~~G~~~~K~~~~g--~~GvPDli~~~~~g~~~fIEvK~~~g-k--ls~~Q~~~~-~~l~~~G~~~~   83 (103)
T Consensus         5 kG~~~EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA-~~g~~~l~iE~K~~~~~kiYl~~e~ve~L~~FA~~fGg~p~   83 (137)
T COG1591           5 KGSRFERELVRILWERGFAVVRAPASGGSKRPLPDIVA-GNGGVYLAIEVKSRRETKIYLDKEQVEKLVEFARRFGGEPY   83 (137)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEE-CCCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCEE
T ss_conf             33268899999998648549983467899999987885-28978999999861588478759999999999997199568


Q ss_pred             EEC
Q ss_conf             985
Q gi|254780128|r   84 VLV   86 (103)
Q Consensus        84 Vv~   86 (103)
T Consensus        84 iav   86 (137)
T COG1591          84 IAV   86 (137)
T ss_pred             EEE
T ss_conf             999