HHsearch alignment for GI: 254780128 and conserved domain: pfam01870
>pfam01870 Hjc Archaeal holliday junction resolvase (hjc). This family of archaebacterial proteins are holliday junction resolvases (hjc gene). The Holliday junction is an essential intermediate of homologous recombination. This protein is the archaeal equivalent of RuvC but is not sequence similar.
Probab=97.59 E-value=0.001 Score=44.48 Aligned_cols=72 Identities=28% Similarity=0.261 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC--CCCCCEEEEECCCCCEEEEEEECCCC---CCCHHHHHHHHHH-HHCCCEEEEEC
Q ss_conf 99999999997898999981188--89874399990698299999976898---8688999999999-97898899985
Q gi|254780128|r 14 VEKRLVTGAKKLDCWVRKASFVG--RRGCPDRLIITPNGGLWWIEVKKPTG---RLSHQQMSEIEEL-RRRGQRVKVLV 86 (103)
Q Consensus 14 ie~~l~~~lk~~G~~~~K~~~~g--~~GvPDli~~~~~g~~~fIEvK~~~g---kls~~Q~~~~~~l-~~~G~~~~Vv~ 86 (103)
T Consensus 2 ~ERel~~~l~~~gFavvR~~gSG~~~~~~pDiiA~-~g~~~~~iEvKst~~~kiyl~~eqve~L~~f~~~fg~~p~iav 79 (93)
T pfam01870 2 YERELVKILEERGFAVVRAAGSGGAVKPLPDIIAG-NGGVYLVIEVKSRKKDKIYLKKEQVEKLVEFARRFGGEPFLAV 79 (93)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 07999999986891699956789988899988985-6987999999961698188789999999999997399699999