HHsearch alignment for GI: 254780128 and conserved domain: pfam01870

>pfam01870 Hjc Archaeal holliday junction resolvase (hjc). This family of archaebacterial proteins are holliday junction resolvases (hjc gene). The Holliday junction is an essential intermediate of homologous recombination. This protein is the archaeal equivalent of RuvC but is not sequence similar.
Probab=97.59  E-value=0.001  Score=44.48  Aligned_cols=72  Identities=28%  Similarity=0.261  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCC--CCCCCEEEEECCCCCEEEEEEECCCC---CCCHHHHHHHHHH-HHCCCEEEEEC
Q ss_conf             99999999997898999981188--89874399990698299999976898---8688999999999-97898899985
Q gi|254780128|r   14 VEKRLVTGAKKLDCWVRKASFVG--RRGCPDRLIITPNGGLWWIEVKKPTG---RLSHQQMSEIEEL-RRRGQRVKVLV   86 (103)
Q Consensus        14 ie~~l~~~lk~~G~~~~K~~~~g--~~GvPDli~~~~~g~~~fIEvK~~~g---kls~~Q~~~~~~l-~~~G~~~~Vv~   86 (103)
T Consensus         2 ~ERel~~~l~~~gFavvR~~gSG~~~~~~pDiiA~-~g~~~~~iEvKst~~~kiyl~~eqve~L~~f~~~fg~~p~iav   79 (93)
T pfam01870         2 YERELVKILEERGFAVVRAAGSGGAVKPLPDIIAG-NGGVYLVIEVKSRKKDKIYLKKEQVEKLVEFARRFGGEPFLAV   79 (93)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             07999999986891699956789988899988985-6987999999961698188789999999999997399699999