HHsearch alignment of GI: 254780128 and MMDB domain: 1hh1_A_

>1hh1_A (A:) Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus}
Probab=97.04  E-value=0.0045  Score=40.14  Aligned_cols=74  Identities=23%  Similarity=0.296  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECC---CCCCCCEEEEECCCCCEEEEEEECCC-----CCCCHHHHHHHHHHHHC-CC
Q ss_conf             99999999999999789899998118---88987439999069829999997689-----88688999999999978-98
Q gi|254780128|r   10 TEKDVEKRLVTGAKKLDCWVRKASFV---GRRGCPDRLIITPNGGLWWIEVKKPT-----GRLSHQQMSEIEELRRR-GQ   80 (103)
Q Consensus        10 ~E~~ie~~l~~~lk~~G~~~~K~~~~---g~~GvPDli~~~~~g~~~fIEvK~~~-----gkls~~Q~~~~~~l~~~-G~   80 (103)
                      .-..-|+.+++++.+.|+.++....-   .+.|-||++.. .++..+|||||+-.     -.+++.|...+.++... +.
T Consensus         7 ~G~~~E~~a~~~L~~~Gy~ilr~~~~n~~~~~gEiDIIa~-~~~~lvfVEVKtr~~~~~~~~v~~~k~~kl~~~a~~~~~   85 (143)
T 1hh1_A            7 KGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIAL-KNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGG   85 (143)
T ss_dssp             --CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEE-ETTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEECC-CCCEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCH
T ss_conf             4447899999999875704999506887776999440246-774399999885157655365208888999999986071


Q ss_pred             EEEE
Q ss_conf             8999
Q gi|254780128|r   81 RVKV   84 (103)
Q Consensus        81 ~~~V   84 (103)
                      ..++
T Consensus        86 ~~~i   89 (143)
T 1hh1_A           86 SLFL   89 (143)
T ss_dssp             EEEE
T ss_pred             HEEE
T ss_conf             3178