Query gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 103 No_of_seqs 109 out of 449 Neff 6.0 Searched_HMMs 33803 Date Sun May 22 15:37:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780128.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1gef_A Holliday junction reso 97.6 0.00063 1.9E-08 45.3 8.8 73 9-85 3-79 (123) 2 >2wcw_A HJC; type II restricti 97.6 0.0013 3.8E-08 43.4 10.3 77 8-85 5-87 (139) 3 >1hh1_A Holliday junction reso 97.0 0.0045 1.3E-07 40.1 8.3 74 10-84 7-89 (143) 4 >2eo0_A Hypothetical protein S 96.8 0.011 3.3E-07 37.8 8.6 77 8-85 8-92 (147) 5 >3h1t_A Type I site-specific r 96.3 0.0071 2.1E-07 38.9 4.9 79 8-86 23-122 (178) 6 >2w00_A HSDR, R.ECOR124I; ATP- 95.6 0.029 8.5E-07 35.3 5.6 61 6-67 28-102 (174) 7 >2fco_A Recombination protein 95.2 0.29 8.6E-06 29.2 10.7 75 11-86 34-136 (200) 8 >3dnx_A Uncharacterized protei 94.9 0.18 5.2E-06 30.5 7.7 58 5-62 7-64 (153) 9 >1zp7_A Recombination protein 94.8 0.38 1.1E-05 28.5 11.2 75 11-86 36-138 (206) 10 >3fov_A UPF0102 protein RPA032 94.4 0.34 9.9E-06 28.8 8.2 61 14-75 26-92 (134) 11 >2vld_A NUCS, UPF0286 protein 94.1 0.11 3.3E-06 31.7 5.4 89 9-97 4-101 (130) 12 >2v9k_A Uncharacterized protei 77.9 6.3 0.00019 21.1 7.4 82 11-94 316-404 (410) 13 >1y88_A Hypothetical protein A 68.4 11 0.00032 19.7 6.8 77 7-84 12-98 (144) 14 >1cw0_A Protein (DNA mismatch 68.3 10 0.00031 19.8 4.8 85 12-100 3-113 (137) 15 >1ob8_A Holliday-junction reso 65.9 12 0.00036 19.4 9.0 70 11-81 6-81 (135) 16 >2r5v_A PCZA361.1; dioxygenase 61.7 14 0.00043 18.9 4.5 97 3-100 9-108 (207) 17 >1xmx_A Hypothetical protein V 60.8 15 0.00044 18.8 4.7 22 41-63 84-105 (175) 18 >2ixs_A SDAI restriction endon 55.6 18 0.00054 18.3 5.3 42 37-78 69-111 (164) 19 >1vsr_A Protein (VSR endonucle 52.7 19 0.00055 18.3 3.8 74 12-89 2-98 (136) 20 >1l6r_A Hypothetical protein T 49.7 23 0.00068 17.7 6.2 35 18-53 30-73 (160) 21 >1zj8_A Probable ferredoxin-de 47.5 25 0.00073 17.5 7.1 92 7-101 102-205 (211) 22 >3bac_A DNA ligase; adenylatio 46.1 25 0.00075 17.4 3.7 48 49-100 26-77 (134) 23 >1z6n_A Hypothetical protein P 41.7 13 0.00039 19.2 1.6 80 13-96 71-163 (167) 24 >1dgs_A DNA ligase; AMP comple 41.5 26 0.00078 17.4 3.1 47 52-101 29-79 (120) 25 >2c5k_T Syntaxin TLG1, T-snare 37.2 31 0.00092 16.9 3.0 38 65-102 15-52 (95) 26 >1vb3_A Threonine synthase; PL 35.0 26 0.00077 17.4 2.3 38 60-100 35-75 (118) 27 >1zjj_A Hypothetical protein P 34.6 29 0.00086 17.1 2.5 38 61-98 15-57 (131) 28 >3hrl_A Endonuclease-like prot 33.4 41 0.0012 16.2 4.4 75 10-87 3-80 (104) 29 >3f9r_A Phosphomannomutase; tr 31.8 44 0.0013 16.0 5.1 24 75-98 115-138 (142) 30 >1ne9_A FEMX; protein, ligase; 30.8 46 0.0013 15.9 5.7 50 52-101 10-65 (180) 31 >2owo_A DNA ligase; protein/DN 30.7 46 0.0014 15.9 4.1 43 53-101 31-77 (118) 32 >1wr8_A Phosphoglycolate phosp 30.2 47 0.0014 15.9 5.8 37 16-53 26-71 (162) 33 >1rkq_A Hypothetical protein Y 29.5 48 0.0014 15.8 4.5 44 8-54 22-77 (176) 34 >1yv9_A Hydrolase, haloacid de 27.0 53 0.0016 15.5 3.8 42 60-101 18-61 (154) 35 >1v2d_A Glutamine aminotransfe 27.0 20 0.00059 18.1 0.6 24 37-60 31-55 (90) 36 >1t47_A 4-hydroxyphenylpyruvat 26.7 54 0.0016 15.5 8.4 89 12-101 31-120 (177) 37 >1xvi_A MPGP, YEDP, putative m 26.7 54 0.0016 15.5 3.8 35 62-96 25-61 (185) 38 >2pq0_A Hypothetical conserved 26.1 55 0.0016 15.4 4.8 36 17-54 27-71 (158) 39 >2akj_A Ferredoxin--nitrite re 25.7 56 0.0017 15.4 4.7 28 50-77 125-152 (191) 40 >1nrw_A Hypothetical protein, 25.3 57 0.0017 15.3 5.3 15 39-54 59-73 (159) 41 >1dce_A Protein (RAB geranylge 25.1 25 0.00075 17.4 0.8 43 25-68 13-57 (110) 42 >2rbk_A Putative uncharacteriz 24.8 58 0.0017 15.3 2.7 27 8-36 20-46 (160) 43 >1zau_A DNA ligase; AMP; HET: 24.7 31 0.00093 16.9 1.2 44 53-101 29-76 (118) 44 >1kl7_A Threonine synthase; th 24.1 60 0.0018 15.2 3.7 41 60-100 65-106 (158) 45 >3hr6_A SPAA, putative surface 23.9 60 0.0018 15.2 2.6 16 48-63 99-114 (147) 46 >3jsl_A DNA ligase; NAD+-depen 22.7 64 0.0019 15.0 3.7 48 51-101 26-77 (126) 47 >3a8u_X Omega-amino acid--pyru 22.4 65 0.0019 15.0 5.9 65 38-102 32-107 (112) 48 >2pvp_A D-alanine-D-alanine li 21.6 67 0.002 14.9 5.5 42 11-62 79-120 (161) 49 >3dnp_A Stress response protei 21.4 68 0.002 14.9 5.4 38 16-54 29-75 (175) 50 >2b30_A Pvivax hypothetical pr 21.0 70 0.0021 14.8 4.9 42 59-100 41-84 (192) 51 >3c6v_A Probable tautomerase/d 20.9 70 0.0021 14.8 3.3 16 55-70 25-40 (138) 52 >3c3m_A Response regulator rec 20.8 70 0.0021 14.8 5.5 32 66-97 14-45 (108) 53 >2c4n_A Protein NAGD; nucleoti 20.5 71 0.0021 14.7 3.6 39 61-99 17-60 (144) 54 >2zos_A MPGP, mannosyl-3-phosp 20.5 71 0.0021 14.7 4.3 74 17-93 24-127 (165) No 1 >>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} (A:) Probab=97.57 E-value=0.00063 Score=45.32 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=58.2 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHHH-HHCCCEEEE Q ss_conf 8999999999999997898999981188898743999906982999999768988---688999999999-978988999 Q gi|254780128|r 9 QTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEEL-RRRGQRVKV 84 (103) Q Consensus 9 ~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l-~~~G~~~~V 84 (103) ++=+..|+.+++.+...|+.+++..+ +|-||++.. +++.++.||||+..+. ++..|..-+..+ +..|+..++ T Consensus 3 ~kG~~~EReL~~~L~~~Gfav~R~pg---Sg~pDiiA~-~~~~~~~iEvKst~k~~iyi~~eqiekL~~f~~~fg~~p~i 78 (123) T 1gef_A 3 RKGAQAERELIKLLEKHGFAVVRSAG---SKKVDLVAG-NGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVL 78 (123) T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEBGG---GSSCSEEEE-CSSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEE T ss_pred CCCCHHHHHHHHHHHHHCEEEEEECC---CCCCCEEEC-CCEEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCEEE T ss_conf 44106799999999972716999548---999766605-74068999999816875662588889999999861972689 Q ss_pred E Q ss_conf 8 Q gi|254780128|r 85 L 85 (103) Q Consensus 85 v 85 (103) + T Consensus 79 a 79 (123) T 1gef_A 79 A 79 (123) T ss_dssp E T ss_pred E T ss_conf 9 No 2 >>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A (A:) Probab=97.56 E-value=0.0013 Score=43.39 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=60.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECC-C-CCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHH-HHHCCCE Q ss_conf 8899999999999999789899998118-8-898743999906982999999768988---68899999999-9978988 Q gi|254780128|r 8 YQTEKDVEKRLVTGAKKLDCWVRKASFV-G-RRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEE-LRRRGQR 81 (103) Q Consensus 8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~-g-~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~-l~~~G~~ 81 (103) +++=+..|+.|+..+...|+.|++.... + ....||++.. +++.++.||||+..+. +++.|..-+.. .+..|+. T Consensus 5 ~~kG~~~EReL~~~L~~~GfaviRapgSg~~~~~~pDiiA~-~~~~~~~IEvKst~~~~iyi~~eqiekL~~f~~~fg~~ 83 (139) T 2wcw_A 5 KSKGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAG-NGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAE 83 (139) T ss_dssp --CHHHHHHHHHHHHHHTTCEEEEBTTSSSCSSCCCSEEEE-CSSCEEEEEEEECSSSCEEEEHHHHHHHHHHHHHHTCE T ss_pred CHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEE-CCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCE T ss_conf 00136999999999997898699875446788899878840-69816866757502662560999999999999817985 Q ss_pred EEEE Q ss_conf 9998 Q gi|254780128|r 82 VKVL 85 (103) Q Consensus 82 ~~Vv 85 (103) .+++ T Consensus 84 p~ia 87 (139) T 2wcw_A 84 AYVA 87 (139) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9999 No 3 >>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} (A:) Probab=97.04 E-value=0.0045 Score=40.14 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=53.7 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECC---CCCCCCEEEEECCCCCEEEEEEECCC-----CCCCHHHHHHHHHHHHC-CC Q ss_conf 99999999999999789899998118---88987439999069829999997689-----88688999999999978-98 Q gi|254780128|r 10 TEKDVEKRLVTGAKKLDCWVRKASFV---GRRGCPDRLIITPNGGLWWIEVKKPT-----GRLSHQQMSEIEELRRR-GQ 80 (103) Q Consensus 10 ~E~~ie~~l~~~lk~~G~~~~K~~~~---g~~GvPDli~~~~~g~~~fIEvK~~~-----gkls~~Q~~~~~~l~~~-G~ 80 (103) .-..-|+.+++++.+.|+.++....- .+.|-||++.. .++..+|||||+-. -.+++.|...+.++... +. T Consensus 7 ~G~~~E~~a~~~L~~~Gy~ilr~~~~n~~~~~gEiDIIa~-~~~~lvfVEVKtr~~~~~~~~v~~~k~~kl~~~a~~~~~ 85 (143) T 1hh1_A 7 KGSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIAL-KNGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGG 85 (143) T ss_dssp --CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEE-ETTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTC T ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEECC-CCCEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCH T ss_conf 4447899999999875704999506887776999440246-774399999885157655365208888999999986071 Q ss_pred EEEE Q ss_conf 8999 Q gi|254780128|r 81 RVKV 84 (103) Q Consensus 81 ~~~V 84 (103) ..++ T Consensus 86 ~~~i 89 (143) T 1hh1_A 86 SLFL 89 (143) T ss_dssp EEEE T ss_pred HEEE T ss_conf 3178 No 4 >>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} (A:) Probab=96.79 E-value=0.011 Score=37.78 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=57.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEC-CC--CCCCCEEEEECCCCCEEEEEEECC-CCC---CCHHHHHHHHHH-HHCC Q ss_conf 889999999999999978989999811-88--898743999906982999999768-988---688999999999-9789 Q gi|254780128|r 8 YQTEKDVEKRLVTGAKKLDCWVRKASF-VG--RRGCPDRLIITPNGGLWWIEVKKP-TGR---LSHQQMSEIEEL-RRRG 79 (103) Q Consensus 8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~-~g--~~GvPDli~~~~~g~~~fIEvK~~-~gk---ls~~Q~~~~~~l-~~~G 79 (103) .++=+..|+.|++.+...|+.+++..+ +| .+-.||++... ++.++.||||+. ++. +..+|..-+-.+ +..| T Consensus 8 ~~kG~~~EReL~~~L~~~Gfav~R~p~Sgg~~~~~~pDiiA~~-~~~~~~iEvKst~k~~~iyi~~eqvekL~~f~~~fg 86 (147) T 2eo0_A 8 KSRGSSVERYIVSRLRDKGFAVIRAPASGSKRKDHVPDIIALK-SGVIILIEVKSRKNGQKIYIEKEQAEGIREFAKRSG 86 (147) T ss_dssp ----CHHHHHHHHHHHHTTCEEECC-----CCGGGSCSEEEEE-TTEEEEEEEEECCCC-CEEECHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECC-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 3353399999999999779867970145776788888625037-983799999871568753469999999999999679 Q ss_pred CEEEEE Q ss_conf 889998 Q gi|254780128|r 80 QRVKVL 85 (103) Q Consensus 80 ~~~~Vv 85 (103) +..+++ T Consensus 87 ~~p~iA 92 (147) T 2eo0_A 87 GELFLG 92 (147) T ss_dssp CEEEEE T ss_pred CEEEEE T ss_conf 938999 No 5 >>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:1-169,A:362-370) Probab=96.28 E-value=0.0071 Score=38.95 Aligned_cols=79 Identities=14% Similarity=0.008 Sum_probs=58.0 Q ss_pred CCCHHHHHHHHHHH-HHHCCCEEE---------------E----EECCCCCCCCEEEEECCCCCE-EEEEEECCCCCCCH Q ss_conf 88999999999999-997898999---------------9----811888987439999069829-99999768988688 Q gi|254780128|r 8 YQTEKDVEKRLVTG-AKKLDCWVR---------------K----ASFVGRRGCPDRLIITPNGGL-WWIEVKKPTGRLSH 66 (103) Q Consensus 8 ~~~E~~ie~~l~~~-lk~~G~~~~---------------K----~~~~g~~GvPDli~~~~~g~~-~fIEvK~~~gkls~ 66 (103) -++|.++..+++.. ++.+||-.. . .......|.||.+++.++|.. +.||+|+++-.++. T Consensus 23 ~~~E~~vr~~~I~~lL~~lGw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~Dy~l~~~~~~p~~viEaK~~~~~l~~ 102 (178) T 3h1t_A 23 ALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLKYTRDFPIAVVEAKPENSPVGQ 102 (178) T ss_dssp SCCHHHHHHHTHHHHHHHTTTTSTTCEEEEEEECCCCCEEEETTEEEECCCCEEEEEEEEETTEEEEEEEECCTTSCGGG T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHH T ss_conf 89999999998589999769998865015899504653643687466688787508998779908999963789779999 Q ss_pred HHHHHHHHHHHCCCEEEEEC Q ss_conf 99999999997898899985 Q gi|254780128|r 67 QQMSEIEELRRRGQRVKVLV 86 (103) Q Consensus 67 ~Q~~~~~~l~~~G~~~~Vv~ 86 (103) .-..-.......|.+..++. T Consensus 103 ~~~Q~~~Ya~~~~~~~~ilT 122 (178) T 3h1t_A 103 GXQQAKDYAEILGLKFAYST 122 (178) T ss_dssp SHHHHHHHHHHHTCSEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEE T ss_conf 99999997886688779997 No 6 >>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} (A:1-54,A:129-248) Probab=95.62 E-value=0.029 Score=35.28 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=47.4 Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEE------------EE-CCCCCCCCEEEEECCCCC-EEEEEEECCCCCCCHH Q ss_conf 04889999999999999978989999------------81-188898743999906982-9999997689886889 Q gi|254780128|r 6 FHYQTEKDVEKRLVTGAKKLDCWVRK------------AS-FVGRRGCPDRLIITPNGG-LWWIEVKKPTGRLSHQ 67 (103) Q Consensus 6 ~h~~~E~~ie~~l~~~lk~~G~~~~K------------~~-~~g~~GvPDli~~~~~g~-~~fIEvK~~~gkls~~ 67 (103) -.|.+|++.|+.+++.|.+-|.-.++ +. .++..=-||+.++. +|- .+.||+|+|+..+... T Consensus 28 ~~~~~e~~~~~~~~~~l~~~~~~~~~~~~nN~f~VvnQ~~~~g~~~~R~DIvLlV-NGLPLV~IELK~~~~~i~eA 102 (174) T 2w00_A 28 DSYQSESDLERELIQDLRNQGYEFISVLXRNKVQIIQQFEQAGSHANRYDVTILV-NGLPLVQIELKKRGVAIREA 102 (174) T ss_dssp SCCSSHHHHHHHHHHHHHHTTCEECCCGGGSCEEEEECCC------CCCEEEEEE-TTEEEEEEEECCTTCCHHHH T ss_pred HCCCCHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEEEEECCCCCEEEEEEEEE-CCCEEEEEEECCCCCCHHHH T ss_conf 1027999999999999998796348985378699999889879996131399999-88167999868798999999 No 7 >>2fco_A Recombination protein U (penicillin-binding protein related factor A); flexibility, hydrolase; 1.40A {Geobacillus kaustophilus HTA426} PDB: 1y1o_A (A:) Probab=95.19 E-value=0.29 Score=29.19 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=58.7 Q ss_pred HHHHHHHHHHHHHHCCCEEEEE---------ECCC------------CCCCCEEEEECCCCCEEEEEEECCC-C------ Q ss_conf 9999999999999789899998---------1188------------8987439999069829999997689-8------ Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKA---------SFVG------------RRGCPDRLIITPNGGLWWIEVKKPT-G------ 62 (103) Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~---------~~~g------------~~GvPDli~~~~~g~~~fIEvK~~~-g------ 62 (103) |..|......+....=+.+.|. ..++ .+..||...++ .|+++..|.|... + T Consensus 34 E~~In~sn~~Y~~~~iA~I~KkPtPi~ivkv~~~~r~~a~i~~a~f~~kSt~DY~Gvy-kG~~i~FEAKeT~~k~~fpl~ 112 (200) T 2fco_A 34 EDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFPLK 112 (200) T ss_dssp HHHHHHHHHHHHHTTSCEEEECCCCC-----------------CCCCCCSSCSEEEEE-TTEEEEEEEEEESCSSEEEGG T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEE-CCEEEEEECCCCCCCCCCCHH T ss_conf 9999999999987797999970788279962477656654677896467988722577-688999984344576601423 Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEC Q ss_conf 868899999999997898899985 Q gi|254780128|r 63 RLSHQQMSEIEELRRRGQRVKVLV 86 (103) Q Consensus 63 kls~~Q~~~~~~l~~~G~~~~Vv~ 86 (103) .++++|...++....+|+.++++= T Consensus 113 nI~~HQi~~L~~~~~~ggiaF~iI 136 (200) T 2fco_A 113 NFHAHQIRHMEQVVAHGGICFAIL 136 (200) T ss_dssp GSCHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 077999999999997899799999 No 8 >>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi} (A:) Probab=94.86 E-value=0.18 Score=30.51 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=50.0 Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCC Q ss_conf 1048899999999999999789899998118889874399990698299999976898 Q gi|254780128|r 5 SFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTG 62 (103) Q Consensus 5 ~~h~~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~g 62 (103) +++.++...+++.+.+.+.+.|+.+.--.+....--||++.+.++|.+..||+|.... T Consensus 7 ~r~~~~~~~l~r~v~r~l~~~g~~~~~Ev~l~~g~RaDv~a~~~~g~~~~iEiKvSra 64 (153) T 3dnx_A 7 TLDLQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVXGLGPKGEIWVIECKSSRA 64 (153) T ss_dssp -CCCCHHHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEEEEECTTCCEEEEEECSSHH T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCHH T ss_conf 4347758799999999999779956666606899778899988999499999735788 No 9 >>1zp7_A Recombination protein U; recombination,DNA-binding protein,resolvase, DNA binding protein; 2.25A {Bacillus subtilis} PDB: 1rzn_A (A:) Probab=94.78 E-value=0.38 Score=28.50 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCEEEEECCCCCEEEEEEECCCC------- Q ss_conf 9999999999999789899998118---------------------889874399990698299999976898------- Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFV---------------------GRRGCPDRLIITPNGGLWWIEVKKPTG------- 62 (103) Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~---------------------g~~GvPDli~~~~~g~~~fIEvK~~~g------- 62 (103) |..|......+....=+.+.|--.| ..+.-||...++ .|+++..|.|...+ T Consensus 36 E~~In~sn~~Y~~~~iAvI~KkPtPi~ivkv~~~~r~~a~I~~ayf~~kSt~DY~Gvy-kG~~i~FEAKeT~nk~~fpl~ 114 (206) T 1zp7_A 36 EDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFPLQ 114 (206) T ss_dssp HHHHHHHHHHHHHTTSCEEEECCCCCCSCC-------------CCCCCCSSCSEEEEE-TTEEEEEEEEECCCSSEEEGG T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEE-CCEEEEEECCCCCCCCCCCHH T ss_conf 9999999999997798999972798289961576666745566896345778710377-789999974333577601533 Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEC Q ss_conf 868899999999997898899985 Q gi|254780128|r 63 RLSHQQMSEIEELRRRGQRVKVLV 86 (103) Q Consensus 63 kls~~Q~~~~~~l~~~G~~~~Vv~ 86 (103) .++++|...++....+|+.++++= T Consensus 115 ni~~HQi~~L~~~~~~gGIaF~ii 138 (206) T 1zp7_A 115 NFHDHQIEHMKQVKAQDGICFVII 138 (206) T ss_dssp GSCHHHHHHHHHHHHTTCEEEEEE T ss_pred HCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 372999999999997899899999 No 10 >>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009} (A:) Probab=94.38 E-value=0.34 Score=28.81 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=44.9 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCC------CCCCHHHHHHHHHH Q ss_conf 999999999978989999811888987439999069829999997689------88688999999999 Q gi|254780128|r 14 VEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPT------GRLSHQQMSEIEEL 75 (103) Q Consensus 14 ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~------gkls~~Q~~~~~~l 75 (103) -|.....+|++.|+.+..--.-.+.|==|||.. .++..+|||||+-. ..+++.|...+.+. T Consensus 26 gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~-~~~~LvFVEVK~R~~~~~~~eav~~~K~~ri~~a 92 (134) T 3fov_A 26 AEASAADYLERQGYRILARRFKTRCGEIDLVAQ-RDALVAFVEVKARGNVDDAAYAVTPRQQSRIVAA 92 (134) T ss_dssp HHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEE-ETTEEEEEEEEEC------CCCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEE-CCCEEEEEEEEEECCCCCHHHCCCHHHHHHHHHH T ss_conf 999999999987999943422579996067998-1999999998874488997673999999999999 No 11 >>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} (A:122-251) Probab=94.15 E-value=0.11 Score=31.70 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=59.8 Q ss_pred CCHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCC-HHHH-HHHHHHHHCC----C Q ss_conf 89999999999999978--9899998118889874399990698299999976898868-8999-9999999789----8 Q gi|254780128|r 9 QTEKDVEKRLVTGAKKL--DCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLS-HQQM-SEIEELRRRG----Q 80 (103) Q Consensus 9 ~~E~~ie~~l~~~lk~~--G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls-~~Q~-~~~~~l~~~G----~ 80 (103) .+|+++|..+.+-+..+ |.....-..+-..|.=|++..-++|+++-||+|++....+ -.|. .....+.+.+ - T Consensus 4 ~~E~dLe~~i~~n~~~l~~g~~~v~~E~~~~~g~IDll~~d~~~~~ViIElK~~~~~~~~i~Ql~~Y~~~~~~~~~~~~~ 83 (130) T 2vld_A 4 GSEAEXANLIFENPRVIEEGFKPIYREKPIRHGIVDVXGVDKDGNIVVLELKRRKADLHAVSQXKRYVDSLKEEYGENVR 83 (130) T ss_dssp -CHHHHHHHHHHCGGGTCTTCEEEEEEEEETTEEEEEEEECTTSCEEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCEE T ss_pred ECHHHHHHHHHHCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 22999999998699986789689999997188866899991799999999970479874899999999998612599913 Q ss_pred EEEEECCHHHH-HHHHHH Q ss_conf 89998598999-999999 Q gi|254780128|r 81 RVKVLVSMEEV-DNFLEE 97 (103) Q Consensus 81 ~~~Vv~s~edv-~~~l~~ 97 (103) ...+|.+.+.. .+.+.. T Consensus 84 gi~~a~~~~~~~~~~~~~ 101 (130) T 2vld_A 84 GILVAPSLTEGAKKLLEK 101 (130) T ss_dssp EEEEESCBCHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHH T ss_conf 999978699899999997 No 12 >>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} (A:1-410) Probab=77.87 E-value=6.3 Score=21.11 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCC-CCCHHHHHHH-HHHHHCCCEEEEE-- Q ss_conf 99999999999997-89899998118889874399990698299999976898-8688999999-9999789889998-- Q gi|254780128|r 11 EKDVEKRLVTGAKK-LDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTG-RLSHQQMSEI-EELRRRGQRVKVL-- 85 (103) Q Consensus 11 E~~ie~~l~~~lk~-~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~g-kls~~Q~~~~-~~l~~~G~~~~Vv-- 85 (103) |.-+|..+...+.. .++--++|.+.||--+==+++ . +||.|.||++.|.- .++..+...+ +.+++....+.|. T Consensus 316 ~~SVee~I~~~i~~~~~~~~~~fh~sGREDvDVRmL-G-~GRPFviEi~nP~r~~~~~~~l~~le~~IN~~~~~V~V~~L 393 (410) T 2v9k_A 316 ESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTL-G-NGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRDL 393 (410) T ss_dssp SCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEE-E-EEEEEEEEEESCSCCCCCHHHHHHHHHHHHTTCSSEEEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEC-C-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 778899988999987088734896367565541212-7-99836999247745668889999999998445993899974 Q ss_pred --CCHHHHHHH Q ss_conf --598999999 Q gi|254780128|r 86 --VSMEEVDNF 94 (103) Q Consensus 86 --~s~edv~~~ 94 (103) -+.+++..+ T Consensus 394 ~~v~r~~~~~i 404 (410) T 2v9k_A 394 QLVTREAIGHM 404 (410) T ss_dssp EEECTHHHHHH T ss_pred EEECHHHHHHH T ss_conf 89868997555 No 13 >>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} (A:1-144) Probab=68.37 E-value=11 Score=19.71 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=49.7 Q ss_pred CCCCHHHHHHHHHHH-HHHCCCEEEE---EECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHH------HHHHH Q ss_conf 488999999999999-9978989999---8118889874399990698299999976898868899999------99999 Q gi|254780128|r 7 HYQTEKDVEKRLVTG-AKKLDCWVRK---ASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSE------IEELR 76 (103) Q Consensus 7 h~~~E~~ie~~l~~~-lk~~G~~~~K---~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~------~~~l~ 76 (103) .-++-.++|.+++.. +.+.|+.+.+ +..++..|--|++.. .++..++||||.-.+......... ...+. T Consensus 12 ~~l~~~~FE~~lv~~ll~~~Gy~~~~~~~~~~~~~D~giD~~~~-~~~~~~~VqcK~~~~~v~~~~v~~~~~~~~~~~~~ 90 (144) T 1y88_A 12 SGRENLYFQGHMVARLLEEHGFETKTNVIVQGNCVEQEIDVVAE-RDGERYMIECKFHNIPVYTGLKEAMYTYARFLDVE 90 (144) T ss_dssp ----CHHHHHHHHHHHHHTTTCEEEEEEEEECSSSEEEEEEEEE-ETTEEEEEEECCCSSSCEECHHHHHHHHHHHHHHG T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECEEECCCCCCCCEEEEEE-ECCEEEEEEEEECCCCCCCCCHHEEEHHHHHHHHH T ss_conf 78722769999999999976990711458678878862489999-79908999999726788898101110465787776 Q ss_pred HCCCEEEE Q ss_conf 78988999 Q gi|254780128|r 77 RRGQRVKV 84 (103) Q Consensus 77 ~~G~~~~V 84 (103) ..++...| T Consensus 91 ~~~~~~gi 98 (144) T 1y88_A 91 KHGFTQPW 98 (144) T ss_dssp GGTCSEEE T ss_pred HCCCCEEE T ss_conf 42786289 No 14 >>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} (A:19-155) Probab=68.27 E-value=10 Score=19.80 Aligned_cols=85 Identities=19% Similarity=0.088 Sum_probs=51.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC---------CC--------------HHH Q ss_conf 9999999999997898999981188898743999906982999999768988---------68--------------899 Q gi|254780128|r 12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR---------LS--------------HQQ 68 (103) Q Consensus 12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk---------ls--------------~~Q 68 (103) +..|+.+...+.+.|..+.. ..+..++.+|+ ++. + .-+.||+=...=+ +. ..- T Consensus 3 S~~E~~l~~~L~~~G~~~~~-q~~v~~~~~D~-~~~-~-~rl~IE~DG~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~rd 78 (137) T 1cw0_A 3 TAIEKRLASLLTGQGLAFRV-QDASLPGRPDF-VVD-E-YRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERD 78 (137) T ss_dssp CHHHHHHHHHHHHTTCCCEE-CCTTSTTCCSE-EEG-G-GTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCEEEE-CCCCCCCEEEE-EEC-C-CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 98999999999988988996-56777997669-962-6-30389972010157764335688741888888876468989 Q ss_pred HHHHHHHHHCCCEEEEECCHH---HHHHHHHHHHH Q ss_conf 999999997898899985989---99999999986 Q gi|254780128|r 69 MSEIEELRRRGQRVKVLVSME---EVDNFLEELAC 100 (103) Q Consensus 69 ~~~~~~l~~~G~~~~Vv~s~e---dv~~~l~~l~~ 100 (103) +..-..|+++|+.+.-+.+.+ +.+.+++.|.. T Consensus 79 ~~r~~~L~~~GW~vlr~~~~d~~~~~~~v~~~I~~ 113 (137) T 1cw0_A 79 RRDISRLQELGWRVLIVWECALRGREKLTDEALTE 113 (137) T ss_dssp HHHHHHHHHTTCEEEEEEHHHHSSTTCCCHHHHHH T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH T ss_conf 99999999789989999667124775331999999 No 15 >>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} (A:) Probab=65.94 E-value=12 Score=19.42 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=53.5 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEC--CCCCCCCEEEEECCCCCEEEEEEECCCC---CCCHHHHHHHHHHH-HCCCE Q ss_conf 999999999999978989999811--8889874399990698299999976898---86889999999999-78988 Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASF--VGRRGCPDRLIITPNGGLWWIEVKKPTG---RLSHQQMSEIEELR-RRGQR 81 (103) Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~--~g~~GvPDli~~~~~g~~~fIEvK~~~g---kls~~Q~~~~~~l~-~~G~~ 81 (103) -.+.+..+++..+..|..+++-.. .+..=+||++.- ++|.+..|+||.... .++..|...+.... ..|.. T Consensus 6 D~Rf~~el~di~~~~gf~vfr~~~~~~~~~~~~d~ia~-~gg~v~aI~vk~~~~~~~~~~r~~ie~l~~~ak~~gak 81 (135) T 1ob8_A 6 GKNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFAT-KGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTMK 81 (135) T ss_dssp CHHHHHHHHHHHHHTTCEEEECCC-----CCSCSEEEE-ETTEEEEEEEEEESSSEEEECHHHHHHHHHHHHTSSSE T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE-CCCEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCC T ss_conf 16999999999985993599955789987899978996-79869999999557986988899999999999964976 No 16 >>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis} (A:151-357) Probab=61.66 E-value=14 Score=18.94 Aligned_cols=97 Identities=9% Similarity=0.066 Sum_probs=49.6 Q ss_pred EEEECCC-CHHHHHHHHHHHHHHCCCEEE-EEECCCCC-CCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC Q ss_conf 0010488-999999999999997898999-98118889-87439999069829999997689886889999999999789 Q gi|254780128|r 3 FYSFHYQ-TEKDVEKRLVTGAKKLDCWVR-KASFVGRR-GCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRG 79 (103) Q Consensus 3 ~~~~h~~-~E~~ie~~l~~~lk~~G~~~~-K~~~~g~~-GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G 79 (103) +-|.++. .-+++++.+.-+.+.+|.... .+..++.. ++.-+.+ ..++....+++-.+.+...+....-.......+ T Consensus 9 i~Hv~i~V~~~Dl~~ai~FY~~~LGf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 87 (207) T 2r5v_A 9 IDHFAICLNAGDLGPTVEYYERALGFRQIFDEHIVVGAQAMNSTVV-QSASGAVTLTLIEPDRNADPGQIDEFLKDHQGA 87 (207) T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEEE-ECTTSCCEEEEEEECTTSBCCHHHHHHHHHTSS T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEE-CCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCC T ss_conf 6566663267688999999998739568745401357503888742-057886545553367778720466676550576 Q ss_pred CEEEEECCHHHHHHHHHHHHH Q ss_conf 889998598999999999986 Q gi|254780128|r 80 QRVKVLVSMEEVDNFLEELAC 100 (103) Q Consensus 80 ~~~~Vv~s~edv~~~l~~l~~ 100 (103) +..+++-.++|++++.+.|.+ T Consensus 88 g~~Hiaf~V~did~~~~~L~~ 108 (207) T 2r5v_A 88 GVQHIAFNSNDAVRAVKALSE 108 (207) T ss_dssp EEEEEEEECSCHHHHHHHHHH T ss_pred CCEEEEEEECCHHHHHHHHHH T ss_conf 513677872769999999985 No 17 >>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:142-182,A:252-385) Probab=60.84 E-value=15 Score=18.85 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=16.7 Q ss_pred CEEEEECCCCCEEEEEEECCCCC Q ss_conf 43999906982999999768988 Q gi|254780128|r 41 PDRLIITPNGGLWWIEVKKPTGR 63 (103) Q Consensus 41 PDli~~~~~g~~~fIEvK~~~gk 63 (103) =|+++. .+++.++||||+.+-+ T Consensus 84 LDV~~~-~~n~L~iIECKTg~~~ 105 (175) T 1xmx_A 84 LDVATV-VNNKLHIIECKTKGMR 105 (175) T ss_dssp EEEEEE-ETTEEEEEEEESSCCC T ss_pred EEEEEE-ECCEEEEEEECCCCCC T ss_conf 589999-8999999995688877 No 18 >>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus} (A:160-323) Probab=55.57 E-value=18 Score=18.30 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=34.4 Q ss_pred CCCCCEEEEECCCCCE-EEEEEECCCCCCCHHHHHHHHHHHHC Q ss_conf 8987439999069829-99999768988688999999999978 Q gi|254780128|r 37 RRGCPDRLIITPNGGL-WWIEVKKPTGRLSHQQMSEIEELRRR 78 (103) Q Consensus 37 ~~GvPDli~~~~~g~~-~fIEvK~~~gkls~~Q~~~~~~l~~~ 78 (103) +.-.||+++..++..+ +|||.=+..|-.++.-+..+.+|-+. T Consensus 69 h~klPDvVl~~~~~~wL~liEaVtS~GPv~~~R~~eL~~l~~~ 111 (164) T 2ixs_A 69 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFAT 111 (164) T ss_dssp TCCCCSEEEEETTTTEEEEEEECCTTCCCCHHHHHHHHHHTCB T ss_pred CCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHC T ss_conf 5679988998289998999999757799898999999999736 No 19 >>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli K12} (A:) Probab=52.74 E-value=19 Score=18.27 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=46.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCC--C------C-C-C-------------HHH Q ss_conf 99999999999978989999811888987439999069829999997689--8------8-6-8-------------899 Q gi|254780128|r 12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPT--G------R-L-S-------------HQQ 68 (103) Q Consensus 12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~--g------k-l-s-------------~~Q 68 (103) +..|+.+...+.+.|..+.. ..+..++.+|+ ++. + .-.-||+=... + + + + ..- T Consensus 2 S~~E~~l~~~L~~~G~~~~~-~~~~~~~~~D~-~~~-~-~kl~IE~DG~~~h~~~~~~~~~~~~~~~~~~~~~~~~~erD 77 (136) T 1vsr_A 2 TAIEKRLASLLTGQGLAFRV-QDASLPGRPDF-VVD-E-YRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERD 77 (136) T ss_dssp -CCCHHHHHHHHHTTCCCEE-SCTTSTTCCSE-EEG-G-GTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCEEEE-CCCCCCCCCCE-EEC-C-CCEEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 75999999999988998997-88889998788-754-7-75799970421034884236899841877566775558889 Q ss_pred HHHHHHHHHCCCEEEEECCHH Q ss_conf 999999997898899985989 Q gi|254780128|r 69 MSEIEELRRRGQRVKVLVSME 89 (103) Q Consensus 69 ~~~~~~l~~~G~~~~Vv~s~e 89 (103) +.....|+++|+.+.-+++.+ T Consensus 78 ~~r~~~L~~~GW~Vlr~~~~~ 98 (136) T 1vsr_A 78 RRDISRLQELGWRVLIVWECA 98 (136) T ss_dssp HHHHHHHHHTTCEEEEEEHHH T ss_pred HHHHHHHHHCCCEEEEEECCC T ss_conf 999999998889899996783 No 20 >>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolase, midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} (A:1-85,A:153-227) Probab=49.68 E-value=23 Score=17.73 Aligned_cols=35 Identities=23% Similarity=0.084 Sum_probs=14.5 Q ss_pred HHHHHHHCCCEEEEEECCCC---------CCCCEEEEECCCCCEE Q ss_conf 99999978989999811888---------9874399990698299 Q gi|254780128|r 18 LVTGAKKLDCWVRKASFVGR---------RGCPDRLIITPNGGLW 53 (103) Q Consensus 18 l~~~lk~~G~~~~K~~~~g~---------~GvPDli~~~~~g~~~ 53 (103) .++++++.|+.+.=.++-+. -|+|+.++.. +|..+ T Consensus 30 aL~~L~~~Gi~i~iaTGr~~~~v~~~~~~l~i~~~~i~~-NGa~v 73 (160) T 1l6r_A 30 SIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGE-NGGIM 73 (160) T ss_dssp HHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCCSCEEEG-GGTEE T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEC-CCEEE T ss_conf 999999779989998488602158999971887407843-75599 No 21 >>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418) Probab=47.52 E-value=25 Score=17.53 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=54.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCC-CCEEEEEEECCCCCCCHHHHHHHHHHHH-C--CCEE Q ss_conf 4889999999999999978989999811888987439999069-8299999976898868899999999997-8--9889 Q gi|254780128|r 7 HYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPN-GGLWWIEVKKPTGRLSHQQMSEIEELRR-R--GQRV 82 (103) Q Consensus 7 h~~~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~-g~~~fIEvK~~~gkls~~Q~~~~~~l~~-~--G~~~ 82 (103) |.....++ ..+++.+.+.|....+... .....|...+++. ...+++=++.|.|++++.|...+..+.+ . |... T Consensus 102 ~gi~~~~~-~~v~~~L~~~Gl~t~~~~~--~~~~~~~~Gv~~q~dg~~~vri~~p~G~lt~~ql~~la~iA~kyg~g~ir 178 (211) T 1zj8_A 102 HWIEVENV-PEIWRRLDDVGLQTTAPEP--VKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIR 178 (211) T ss_dssp EEECGGGH-HHHHHHHHTTTCBCTCCCC--CSSCCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEE T ss_pred CCCCHHHH-HHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 78888899-9999999975998647765--43555336437526884576454588455625659999999853998699 Q ss_pred -------EE-ECCHHHHHHHHHHHHHH Q ss_conf -------99-85989999999999863 Q gi|254780128|r 83 -------KV-LVSMEEVDNFLEELACT 101 (103) Q Consensus 83 -------~V-v~s~edv~~~l~~l~~t 101 (103) .+ --+.|++.+++++|.+. T Consensus 179 lTtrQ~i~l~~i~~~~~~~i~~~L~~~ 205 (211) T 1zj8_A 179 FTPYQKLVILDIPDALLDDLIAGLDAL 205 (211) T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHT T ss_pred ECCCCCEEEECCCHHHHHHHHHHHHHC T ss_conf 764005153046334099999999974 No 22 >>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae} (A:19-55,A:174-270) Probab=46.12 E-value=25 Score=17.45 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=38.5 Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHH Q ss_conf 9829999997689886889999999999789889----998598999999999986 Q gi|254780128|r 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELAC 100 (103) Q Consensus 49 ~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~ 100 (103) +..-+..|.|-.- ..|...++.|+..|+.+ .+|.+.+++.+.++++.. T Consensus 26 ~~~~y~~e~k~d~----~tq~e~L~~L~~lGF~v~~~~~~~~~~~ev~~~i~~~~~ 77 (134) T 3bac_A 26 KPLTFCCEPKLDP----TTHYARLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQN 77 (134) T ss_dssp SSCEEEEEEEESC----SBHHHHHHHHHHTTCCBCTTCEEEEHHHHHHHHHHHHHT T ss_pred CCCEEEEEEEECC----CCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHH T ss_conf 7823898765526----539999999998389766551486581899999999986 No 23 >>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} (A:) Probab=41.72 E-value=13 Score=19.17 Aligned_cols=80 Identities=14% Similarity=-0.056 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHC-CCEEEEEE------------CCCCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCC Q ss_conf 9999999999978-98999981------------1888987439999069829999997689886889999999999789 Q gi|254780128|r 13 DVEKRLVTGAKKL-DCWVRKAS------------FVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRG 79 (103) Q Consensus 13 ~ie~~l~~~lk~~-G~~~~K~~------------~~g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G 79 (103) .....+.+..+.+ +..+.+.. ..|..|+|-++++.++|....... |.+......+.+.++... T Consensus 71 ~~~p~~~~la~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~~~~~----g~~~~~~~~~~~~l~~~~ 146 (167) T 1z6n_A 71 INLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFV----ERPQAVLDGGPQALAAYK 146 (167) T ss_dssp HHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEE----SSCHHHHHHCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEE----HHHHHHHHHHHHHHHHHH T ss_conf 9999999999977998389998886576799987752124320343267750442220----034898861002477654 Q ss_pred CEEEEECCHHHHHHHHH Q ss_conf 88999859899999999 Q gi|254780128|r 80 QRVKVLVSMEEVDNFLE 96 (103) Q Consensus 80 ~~~~Vv~s~edv~~~l~ 96 (103) ....-....+|+.++|. T Consensus 147 ~~~~~~~~~~~~~~ll~ 163 (167) T 1z6n_A 147 AGDYLEHAIGDVLAIIE 163 (167) T ss_dssp TTTTHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 14011899999999862 No 24 >>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} (A:82-117,A:232-315) Probab=41.49 E-value=26 Score=17.35 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=37.2 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHHH Q ss_conf 9999997689886889999999999789889----9985989999999999863 Q gi|254780128|r 52 LWWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELACT 101 (103) Q Consensus 52 ~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~t 101 (103) -+.+|.|-.+- +.|...++.|+..|+.+ .+|.+++++.+.++++... T Consensus 29 ~~~~E~K~~~~---~t~~e~l~~L~~~GF~v~~~~~~~~~~~~i~~~~~~~~~~ 79 (120) T 1dgs_A 29 LYTVEHKVSGL---KSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQ 79 (120) T ss_dssp EEEEEECCCCC---CBHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHT T ss_pred EEEEEECCCCC---CCHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH T ss_conf 38998745885---6999999999977998786758608999999999999988 No 25 >>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T (T:) Probab=37.20 E-value=31 Score=16.92 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=32.7 Q ss_pred CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC Q ss_conf 88999999999978988999859899999999998630 Q gi|254780128|r 65 SHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTL 102 (103) Q Consensus 65 s~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~l~~t~ 102 (103) +..|...+...-+.+....-..+.+++.++++++..|+ T Consensus 15 T~EQ~~RL~q~L~~~~~~~~~~~~~Ev~EIv~di~ETi 52 (95) T 2c5k_T 15 TKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETI 52 (95) T ss_dssp HHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999986035775346899999999999999 No 26 >>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} (A:124-213,A:401-428) Probab=35.01 E-value=26 Score=17.37 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=27.5 Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHHHH Q ss_conf 89886889999999999789889998---598999999999986 Q gi|254780128|r 60 PTGRLSHQQMSEIEELRRRGQRVKVL---VSMEEVDNFLEELAC 100 (103) Q Consensus 60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv---~s~edv~~~l~~l~~ 100 (103) |.|..|+.|+. .+...|..+.++ -++||+.+.+.++-. T Consensus 35 P~g~vS~~k~~---qm~~~GanV~vi~V~G~fDDa~~~a~~l~~ 75 (118) T 1vb3_A 35 PRGKISPLQEK---LFCTLGGNIETVAIDGDFDACQALVKQAFD 75 (118) T ss_dssp ETTCSCHHHHH---HHHSCCTTEEEEEEESCHHHHHHHHHHGGG T ss_pred CCCCCCHHHHH---HHHHCCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 57764078999---987526774388158987789999998863 No 27 >>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263) Probab=34.65 E-value=29 Score=17.09 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=25.7 Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHHHHHHHHH Q ss_conf 98868899999999997898899985-----989999999999 Q gi|254780128|r 61 TGRLSHQQMSEIEELRRRGQRVKVLV-----SMEEVDNFLEEL 98 (103) Q Consensus 61 ~gkls~~Q~~~~~~l~~~G~~~~Vv~-----s~edv~~~l~~l 98 (103) +.++-|.-..++++|+++|....++. +.+++.+.|..+ T Consensus 15 ~~~~~~~a~e~l~~L~~~G~~~~ivTN~~~~~~~~~~~~L~~l 57 (131) T 1zjj_A 15 GNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKM 57 (131) T ss_dssp TTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC T ss_conf 9995844999999999779968999489999999999999976 No 28 >>3hrl_A Endonuclease-like protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090} (A:) Probab=33.44 E-value=41 Score=16.18 Aligned_cols=75 Identities=9% Similarity=-0.058 Sum_probs=49.7 Q ss_pred CHHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC-CCHHHHHHHHHHHHCCCEEEEEC Q ss_conf 999999999999997898--999981188898743999906982999999768988-68899999999997898899985 Q gi|254780128|r 10 TEKDVEKRLVTGAKKLDC--WVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR-LSHQQMSEIEELRRRGQRVKVLV 86 (103) Q Consensus 10 ~E~~ie~~l~~~lk~~G~--~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk-ls~~Q~~~~~~l~~~G~~~~Vv~ 86 (103) +++..|+.+-..+.+.|- .-+....+...+.+|+ ++ ++ .-+.||+-.+.-. ....-...-+.|..+|+.+.=+. T Consensus 3 ~~S~~E~~l~~~l~~~gl~~~~~~~~~~~~~~~~D~-~~-~~-~rlaIE~DG~~~~~~~~~d~~R~~~L~~~Gw~vlrv~ 79 (104) T 3hrl_A 3 AXSEAEAKLWQHLRAGRLNGYKFRRQQPXGNYIVDF-XC-VT-PKLIVEADGGQHAEQAVYDHARTVYLNSLGFTVLRFW 79 (104) T ss_dssp CCCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEE-EE-TT-TTEEEEEEC-------CCCHHHHHHHHHTTCEEEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEE-EC-CC-CCEEEEECCCHHCCCCCCHHHHHHHHHHCCCEEEEEC T ss_conf 999999999999984475798656027656666611-04-43-2889997670213411422999999998998899960 Q ss_pred C Q ss_conf 9 Q gi|254780128|r 87 S 87 (103) Q Consensus 87 s 87 (103) . T Consensus 80 ~ 80 (104) T 3hrl_A 80 N 80 (104) T ss_dssp H T ss_pred H T ss_conf 9 No 29 >>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* (A:1-88,A:193-246) Probab=31.83 E-value=44 Score=16.02 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=15.3 Q ss_pred HHHCCCEEEEECCHHHHHHHHHHH Q ss_conf 997898899985989999999999 Q gi|254780128|r 75 LRRRGQRVKVLVSMEEVDNFLEEL 98 (103) Q Consensus 75 l~~~G~~~~Vv~s~edv~~~l~~l 98 (103) ..+.+...+-|.|++|-.+.+++| T Consensus 115 ~~~~~~~~~~v~~p~dt~~~~~~~ 138 (142) T 3f9r_A 115 YTDKRTIGHKVTSYKDTIAEVEKI 138 (142) T ss_dssp HTCTTSEEEECSSHHHHHHHHHHH T ss_pred HHCCCCCEEEECCHHHHHHHHHHH T ss_conf 955686789908999999999999 No 30 >>1ne9_A FEMX; protein, ligase; 1.70A {Weissella viridescens} (A:138-317) Probab=30.79 E-value=46 Score=15.91 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=37.4 Q ss_pred EEEEEEECC------CCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH Q ss_conf 999999768------98868899999999997898899985989999999999863 Q gi|254780128|r 52 LWWIEVKKP------TGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACT 101 (103) Q Consensus 52 ~~fIEvK~~------~gkls~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~l~~t 101 (103) ...+.+..+ -..+++..+.-+++.++.|..+.+..+.|+...+.+-+.++ T Consensus 10 ~~~~~L~~~~~~e~~~~~~~~~~Rr~irr~~r~g~~~~~~~~~e~~~~~~~~~~~~ 65 (180) T 1ne9_A 10 NMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTM 65 (180) T ss_dssp EEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH T ss_conf 89997678988899998648979999999997697798539879999999999999 No 31 >>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:80-116,A:237-317) Probab=30.69 E-value=46 Score=15.90 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=34.5 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHHH Q ss_conf 999997689886889999999999789889----9985989999999999863 Q gi|254780128|r 53 WWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELACT 101 (103) Q Consensus 53 ~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~t 101 (103) +..|.|-. .|...++.|+..|+.+ .+|.+.+++.+.++++... T Consensus 31 ~~~E~Ki~------t~~e~l~~L~~~GF~v~~~~~~~~~~~ei~~~~~~~~~~ 77 (118) T 2owo_A 31 WCCELKLD------THLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED 77 (118) T ss_dssp EEEEEEES------BHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHH T ss_pred EEEEEECC------HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 89986040------256666554211542022210012100102345458886 No 32 >>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231) Probab=30.20 E-value=47 Score=15.85 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=19.1 Q ss_pred HHHHHHHHHCCCEEEEEECCCCC---------CCCEEEEECCCCCEE Q ss_conf 99999999789899998118889---------874399990698299 Q gi|254780128|r 16 KRLVTGAKKLDCWVRKASFVGRR---------GCPDRLIITPNGGLW 53 (103) Q Consensus 16 ~~l~~~lk~~G~~~~K~~~~g~~---------GvPDli~~~~~g~~~ 53 (103) ...++.+++.|..+.=.++.... |+++.++.. +|... T Consensus 26 ~e~l~~l~~~Gi~~~i~Tgr~~~~~~~~l~~~~~~~~~i~~-nG~~i 71 (162) T 1wr8_A 26 LEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAE-DGGAI 71 (162) T ss_dssp HHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCSCEEEG-GGTEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCCEEEE-CCCEE T ss_conf 99999998579909999357500102245532776752751-57323 No 33 >>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} (A:1-90,A:197-282) Probab=29.48 E-value=48 Score=15.77 Aligned_cols=44 Identities=18% Similarity=-0.016 Sum_probs=23.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCC------------CCCCCEEEEECCCCCEEE Q ss_conf 88999999999999997898999981188------------898743999906982999 Q gi|254780128|r 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVG------------RRGCPDRLIITPNGGLWW 54 (103) Q Consensus 8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~g------------~~GvPDli~~~~~g~~~f 54 (103) ...+.. ...++.+++.|..+.=.++-+ -.+.+|.+++. +|...+ T Consensus 22 ~i~~~~--~~al~~L~~~Gi~lvi~Tgr~~~~~~~~~~~l~i~~~~~~~I~~-nGa~i~ 77 (176) T 1rkq_A 22 TISPAV--KNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITY-NGALVQ 77 (176) T ss_dssp CCCHHH--HHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEG-GGTEEE T ss_pred CCCHHH--HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEC-CCCEEE T ss_conf 519999--99999999889999999899889999999984776888759973-861565 No 34 >>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264) Probab=27.03 E-value=53 Score=15.51 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=32.9 Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHH Q ss_conf 898868899999999997898899985--989999999999863 Q gi|254780128|r 60 PTGRLSHQQMSEIEELRRRGQRVKVLV--SMEEVDNFLEELACT 101 (103) Q Consensus 60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv~--s~edv~~~l~~l~~t 101 (103) .++++-|.=...+++|++.|..+.++. +...++.+++++.-. T Consensus 18 ~~~~~~p~~~e~l~~L~~~Gi~~~i~Tn~~~~~~~~~~~~l~~~ 61 (154) T 1yv9_A 18 LGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANE 61 (154) T ss_dssp ETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH T ss_conf 49983813999999999779978999389999879999999875 No 35 >>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} (A:1-36,A:299-352) Probab=26.97 E-value=20 Score=18.10 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=18.1 Q ss_pred CCCCCEEEEECCCCC-EEEEEEECC Q ss_conf 898743999906982-999999768 Q gi|254780128|r 37 RRGCPDRLIITPNGG-LWWIEVKKP 60 (103) Q Consensus 37 ~~GvPDli~~~~~g~-~~fIEvK~~ 60 (103) -.|+||.-+..|+|. ++|+++..- T Consensus 31 ~qg~p~v~~~~P~GGfflWv~lp~~ 55 (90) T 1v2d_A 31 GQGFPSLRVYVPEGTYFLMAELPGW 55 (90) T ss_dssp CCCSCSCCEECCSBSSEEEEECTTC T ss_pred CCCCCCCCCCCCCCCEEEEEECCCH T ss_conf 3889995430798326999968933 No 36 >>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} (A:1-177) Probab=26.69 E-value=54 Score=15.47 Aligned_cols=89 Identities=2% Similarity=-0.134 Sum_probs=53.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHH Q ss_conf 9999999999997898999981188898743999906-982999999768988688999999999978988999859899 Q gi|254780128|r 12 KDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITP-NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEE 90 (103) Q Consensus 12 ~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~-~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv~s~ed 90 (103) .++++.+.-+.+.+|..+.........+..-..+... .+..+.+.. .........+......-......++++.+.+| T Consensus 31 ~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 109 (177) T 1t47_A 31 GNAKQAAHYYSTAFGMQLVAYSGPENGSRETASYVLTNGSARFVLTS-VIKPATPWGHFLADHVAEHGDGVVDLAIEVPD 109 (177) T ss_dssp SCHHHHHHHHHHTSCCEEEEEESGGGTCCSEEEEEEEETTEEEEEEE-ESSCCSHHHHHHHHHHHHHCSEEEEEEEECSC T ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCEEEEEEC-CCCCCCCCCCHHHHHHHHCCCCEEEEEEEECC T ss_conf 89999999999804986999967878860489999826999999946-88988865321344365479971689999664 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999863 Q gi|254780128|r 91 VDNFLEELACT 101 (103) Q Consensus 91 v~~~l~~l~~t 101 (103) +++..+.+.+. T Consensus 110 ~~~~~~~l~~~ 120 (177) T 1t47_A 110 ARAAHAYAIEH 120 (177) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHC T ss_conf 37899999976 No 37 >>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} (A:1-97,A:188-275) Probab=26.66 E-value=54 Score=15.47 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=12.8 Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHH Q ss_conf 886889999999999789889998--59899999999 Q gi|254780128|r 62 GRLSHQQMSEIEELRRRGQRVKVL--VSMEEVDNFLE 96 (103) Q Consensus 62 gkls~~Q~~~~~~l~~~G~~~~Vv--~s~edv~~~l~ 96 (103) +++++.=...+++|++.|+.+.++ ++...+..+++ T Consensus 25 ~~i~~~~~~al~~l~~~g~~~vi~Tgr~~~~~~~~~~ 61 (185) T 1xvi_A 25 SYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQK 61 (185) T ss_dssp CCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH T ss_conf 9569999999999998899999985999899999999 No 38 >>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function, NPPSFA; 2.60A {Geobacillus kaustophilus HTA426} PDB: 2qyh_A (A:1-82,A:183-258) Probab=26.07 E-value=55 Score=15.41 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=18.3 Q ss_pred HHHHHHHHCCCEEEEEECCCCC---------CCCEEEEECCCCCEEE Q ss_conf 9999999789899998118889---------8743999906982999 Q gi|254780128|r 17 RLVTGAKKLDCWVRKASFVGRR---------GCPDRLIITPNGGLWW 54 (103) Q Consensus 17 ~l~~~lk~~G~~~~K~~~~g~~---------GvPDli~~~~~g~~~f 54 (103) ..++++++.|..+.=.++-... |+++++. . +|...+ T Consensus 27 e~L~~l~~~G~~i~i~Tgr~~~~~~~~l~~l~l~~~i~-~-nga~i~ 71 (158) T 2pq0_A 27 EAVRRLKQSGVYVAIATGRAPFXFEHVRKQLGIDSFVS-F-NGQYVV 71 (158) T ss_dssp HHHHHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEE-G-GGTEEE T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-C-CCEEEE T ss_conf 99999997899999989998799899999744163995-6-980999 No 39 >>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} (A:113-217,A:389-474) Probab=25.68 E-value=56 Score=15.36 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=19.5 Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 8299999976898868899999999997 Q gi|254780128|r 50 GGLWWIEVKKPTGRLSHQQMSEIEELRR 77 (103) Q Consensus 50 g~~~fIEvK~~~gkls~~Q~~~~~~l~~ 77 (103) ...++|=++.|.|++++.|..-+..+.+ T Consensus 125 ~G~~~V~i~~p~Grit~~ql~~lA~iAe 152 (191) T 2akj_A 125 QGLSFVGLHIPVGRLQADEMEELARIAD 152 (191) T ss_dssp TTEEEEEECCGGGEECHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCEECHHHHHHHHHHHH T ss_conf 8836755504797777999999999998 No 40 >>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} (A:1-85,A:215-288) Probab=25.34 E-value=57 Score=15.32 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=7.2 Q ss_pred CCCEEEEECCCCCEEE Q ss_conf 8743999906982999 Q gi|254780128|r 39 GCPDRLIITPNGGLWW 54 (103) Q Consensus 39 GvPDli~~~~~g~~~f 54 (103) |+++.++.. +|...+ T Consensus 59 ~l~~~~i~~-~G~~i~ 73 (159) T 1nrw_A 59 GIKTWVISA-NGAVIH 73 (159) T ss_dssp TCCCEEEEG-GGTEEE T ss_pred CCCCCEEEC-CCEEEE T ss_conf 998619978-954898 No 41 >>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} (A:242-351) Probab=25.12 E-value=25 Score=17.44 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=32.1 Q ss_pred CCCEEEEEECC--CCCCCCEEEEECCCCCEEEEEEECCCCCCCHHH Q ss_conf 89899998118--889874399990698299999976898868899 Q gi|254780128|r 25 LDCWVRKASFV--GRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQ 68 (103) Q Consensus 25 ~G~~~~K~~~~--g~~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q 68 (103) .+|...-|..| -.+|.-+|+++. ||...++|=.+|.|+.++.+ T Consensus 13 e~cltv~FSrpv~vg~~~~~LlL~~-D~~Pl~VeWRTp~gr~r~s~ 57 (110) T 1dce_A 13 EACLSVCFSRPLTVGSRMGTLLLMV-DEAPLSVEWRTPDGRNRPSH 57 (110) T ss_dssp TTEEEEEEEEEECTTBTTBCEEEEE-SSSEECCCCBCTTSSCCSEE T ss_pred CCEEEEEECCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCC T ss_conf 6504676246655443443001003-56654243358877676462 No 42 >>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron vpi-5482} (A:1-85,A:187-261) Probab=24.83 E-value=58 Score=15.27 Aligned_cols=27 Identities=7% Similarity=-0.188 Sum_probs=16.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 88999999999999997898999981188 Q gi|254780128|r 8 YQTEKDVEKRLVTGAKKLDCWVRKASFVG 36 (103) Q Consensus 8 ~~~E~~ie~~l~~~lk~~G~~~~K~~~~g 36 (103) ..+|.. ...++++++.|..+.=.++.. T Consensus 20 ~i~~~~--~e~l~~l~~~Gi~i~i~Tg~~ 46 (160) T 2rbk_A 20 RIPSST--IEALEAAHAKGLKIFIATGRP 46 (160) T ss_dssp SCCHHH--HHHHHHHHHTTCEEEEECSSC T ss_pred CCCHHH--HHHHHHHHHCCCEEEEECCCC T ss_conf 889999--999999998899899988999 No 43 >>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis} (A:90-125,A:247-328) Probab=24.72 E-value=31 Score=16.90 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=34.2 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCEEE----EECCHHHHHHHHHHHHHH Q ss_conf 9999976898868899999999997898899----985989999999999863 Q gi|254780128|r 53 WWIEVKKPTGRLSHQQMSEIEELRRRGQRVK----VLVSMEEVDNFLEELACT 101 (103) Q Consensus 53 ~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~----Vv~s~edv~~~l~~l~~t 101 (103) +.+|.|- -..|...++.|+..|+++. +|.+.+++.+.++++... T Consensus 29 ~~~E~K~-----D~tq~e~L~~L~~~GF~v~~~~~~~~~~~ei~~~i~~~~~~ 76 (118) T 1zau_A 29 YLCELKI-----DATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEH 76 (118) T ss_dssp EEEEEEE-----CSBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTTTT T ss_pred CCEEEEE-----CHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHH T ss_conf 2202444-----50069999999970876687738848999999999999975 No 44 >>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} (A:121-241,A:478-514) Probab=24.11 E-value=60 Score=15.18 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=29.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHHHH Q ss_conf 89886889999999999789889998-598999999999986 Q gi|254780128|r 60 PTGRLSHQQMSEIEELRRRGQRVKVL-VSMEEVDNFLEELAC 100 (103) Q Consensus 60 ~~gkls~~Q~~~~~~l~~~G~~~~Vv-~s~edv~~~l~~l~~ 100 (103) |.|+.++.|+..+......|..+..+ -++||+.+...++-. T Consensus 65 P~~~vs~~k~~qi~~~gaenv~Vv~V~Gs~Dda~~~a~~l~~ 106 (158) T 1kl7_A 65 PTGRISPIQEEQXTTVPDENVQTLSVTGTFDNCQDIVKAIFG 106 (158) T ss_dssp ETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHHC T ss_conf 687875023666214078987998726996887599999850 No 45 >>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X* (A:290-436) Probab=23.92 E-value=60 Score=15.17 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=13.9 Q ss_pred CCCCEEEEEEECCCCC Q ss_conf 6982999999768988 Q gi|254780128|r 48 PNGGLWWIEVKKPTGR 63 (103) Q Consensus 48 ~~g~~~fIEvK~~~gk 63 (103) +-|.+.+.|+|+|.|- T Consensus 99 ~~G~Y~l~E~kAP~GY 114 (147) T 3hr6_A 99 KGTEFCLVETATASGY 114 (147) T ss_dssp SCSEEEEEEEECCTTC T ss_pred CCCEEEEEEEECCCCC T ss_conf 9861999996689995 No 46 >>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} PDB: 3jsn_A* (A:80-114,A:228-318) Probab=22.72 E-value=64 Score=15.02 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=36.8 Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEE----EEECCHHHHHHHHHHHHHH Q ss_conf 29999997689886889999999999789889----9985989999999999863 Q gi|254780128|r 51 GLWWIEVKKPTGRLSHQQMSEIEELRRRGQRV----KVLVSMEEVDNFLEELACT 101 (103) Q Consensus 51 ~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~----~Vv~s~edv~~~l~~l~~t 101 (103) -.+.+|.|--+- ..|...++.|+..|+.+ .+|.+.+++.+.++++... T Consensus 26 ~~~~~E~K~D~~---~t~~e~l~~Lk~~GF~v~~~~~~~~~~~ei~~~i~~~~~~ 77 (126) T 3jsl_A 26 VEYMCELKIDNA---RSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQ 77 (126) T ss_dssp CCEEEEEEECCC---SBHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHH T ss_pred CEEEEEEECCCC---CHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHH T ss_conf 118988602652---1178899999862776244538979999999999999974 No 47 >>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridoxal phosphate; HET: PLP; 1.40A {Pseudomonas putida} (X:34-62,X:367-449) Probab=22.41 E-value=65 Score=14.98 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=51.4 Q ss_pred CCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEE-----------CCHHHHHHHHHHHHHHC Q ss_conf 987439999069829999997689886889999999999789889998-----------59899999999998630 Q gi|254780128|r 38 RGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVL-----------VSMEEVDNFLEELACTL 102 (103) Q Consensus 38 ~GvPDli~~~~~g~~~fIEvK~~~gkls~~Q~~~~~~l~~~G~~~~Vv-----------~s~edv~~~l~~l~~t~ 102 (103) ...|-.-=..--|-+..||++.+.+.-.+.-....+.+.++|..+... -+.+|+++.++-+..++ T Consensus 32 ~~~p~V~~vRg~Glm~giel~~~~~~~~~~~~~i~~~~~~~Gll~~~~gn~ir~~PPliite~el~~~l~~l~~~l 107 (112) T 3a8u_X 32 KGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 107 (112) T ss_dssp TTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHH T ss_pred HCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHH T ss_conf 0589837860367199999955873699999999999998893881179989996985789999999999999999 No 48 >>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} (A:140-163,A:231-367) Probab=21.64 E-value=67 Score=14.88 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCC Q ss_conf 9999999999999789899998118889874399990698299999976898 Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTG 62 (103) Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~g 62 (103) ++++++.-++..+++|| +|+.-.=++..+|.++++|+-+--| T Consensus 79 ~~~i~~~A~ki~~aLg~----------~g~~RIDf~v~~ge~yvlEvNt~PG 120 (161) T 2pvp_A 79 EEQLKENFKKLYSDLFD----------GAIIRCDFFVIENEVYLNEINPIPG 120 (161) T ss_dssp HHHHHHHHHHHHTTTST----------TCCEEEEEEEETTEEEEEEEESSCG T ss_pred HHHHHHHHHHHHHHHCC----------CCEEEEEEEEECCEEEEEEECCCCC T ss_conf 99999999999999699----------2769999999999899997409799 No 49 >>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290) Probab=21.44 E-value=68 Score=14.86 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=19.3 Q ss_pred HHHHHHHHHCCCEEEEEECCC---------CCCCCEEEEECCCCCEEE Q ss_conf 999999997898999981188---------898743999906982999 Q gi|254780128|r 16 KRLVTGAKKLDCWVRKASFVG---------RRGCPDRLIITPNGGLWW 54 (103) Q Consensus 16 ~~l~~~lk~~G~~~~K~~~~g---------~~GvPDli~~~~~g~~~f 54 (103) ...++++++.|..+.=.++.. .-|.|+.++.. +|..++ T Consensus 29 ~e~l~~l~~~Gi~~~ivTgr~~~~~~~~l~~lgl~~~~i~~-nGa~i~ 75 (175) T 3dnp_A 29 KDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITH-SGAYIA 75 (175) T ss_dssp HHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEG-GGTEEE T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCEECC-CCEEEE T ss_conf 99999999789999998999889999999980997745616-864999 No 50 >>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} (A:1-115,A:225-301) Probab=20.99 E-value=70 Score=14.80 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=34.6 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHH Q ss_conf 689886889999999999789889998--598999999999986 Q gi|254780128|r 59 KPTGRLSHQQMSEIEELRRRGQRVKVL--VSMEEVDNFLEELAC 100 (103) Q Consensus 59 ~~~gkls~~Q~~~~~~l~~~G~~~~Vv--~s~edv~~~l~~l~~ 100 (103) ..+..++|.=..+++++++.|....++ ++...+..++.++.- T Consensus 41 ~~~~~i~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~~~~l~~ 84 (192) T 2b30_A 41 DKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENL 84 (192) T ss_dssp CTTTCSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHHH T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCC T ss_conf 98993499999999999978999999869998999999998477 No 51 >>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293} (A:1-138) Probab=20.89 E-value=70 Score=14.79 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=6.3 Q ss_pred EEEECCCCCCCHHHHH Q ss_conf 9997689886889999 Q gi|254780128|r 55 IEVKKPTGRLSHQQMS 70 (103) Q Consensus 55 IEvK~~~gkls~~Q~~ 70 (103) +.++.+.|++|++|+. T Consensus 25 i~I~~~~g~lt~eqK~ 40 (138) T 3c6v_A 25 WLIQHSPNTLTPEEKS 40 (138) T ss_dssp EEEEECTTSSCHHHHH T ss_pred EEEEECCCCCCHHHHH T ss_conf 9999469988999999 No 52 >>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108) Probab=20.75 E-value=70 Score=14.77 Aligned_cols=32 Identities=25% Similarity=0.104 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 89999999999789889998598999999999 Q gi|254780128|r 66 HQQMSEIEELRRRGQRVKVLVSMEEVDNFLEE 97 (103) Q Consensus 66 ~~Q~~~~~~l~~~G~~~~Vv~s~edv~~~l~~ 97 (103) .+.....+.|+..|+.+..+.+.+++.+.+.+ T Consensus 14 ~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~ 45 (108) T 3c3m_A 14 XIVDVFVTXLERGGYRPITAFSGEECLEALNA 45 (108) T ss_dssp HHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH T ss_conf 99999999999879999983353118998864 No 53 >>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250) Probab=20.54 E-value=71 Score=14.74 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=30.9 Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEC-----CHHHHHHHHHHHH Q ss_conf 98868899999999997898899985-----9899999999998 Q gi|254780128|r 61 TGRLSHQQMSEIEELRRRGQRVKVLV-----SMEEVDNFLEELA 99 (103) Q Consensus 61 ~gkls~~Q~~~~~~l~~~G~~~~Vv~-----s~edv~~~l~~l~ 99 (103) ++++-|.-...++++++.|..+.+|. +.+++.+.+.++. T Consensus 17 ~~~~~~~~~e~i~~l~~~G~~~~i~Tn~s~~~~~~~~~~l~~~g 60 (144) T 2c4n_A 17 DNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAG 60 (144) T ss_dssp TTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTT T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCC T ss_conf 99868219999999997799589992899899899975543124 No 54 >>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:1-94,A:179-249) Probab=20.48 E-value=71 Score=14.74 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=40.1 Q ss_pred HHHHHHHHCCCEEEEEECCCCC-----------CCCEEEEECCCCCEEEEE---------EECC-------CCCCCHHHH Q ss_conf 9999999789899998118889-----------874399990698299999---------9768-------988688999 Q gi|254780128|r 17 RLVTGAKKLDCWVRKASFVGRR-----------GCPDRLIITPNGGLWWIE---------VKKP-------TGRLSHQQM 69 (103) Q Consensus 17 ~l~~~lk~~G~~~~K~~~~g~~-----------GvPDli~~~~~g~~~fIE---------vK~~-------~gkls~~Q~ 69 (103) ..++++++.|..+. ...||+ |+|+-+++. +|...+.. +... --+..+.++ T Consensus 24 ~al~~l~~~G~~~~--iaTGR~~~~~~~~~~~l~~~~~~I~~-NGa~i~~~~~~~i~~~~i~~~~~~~i~~~~~~K~~~~ 100 (165) T 2zos_A 24 PIIEELKDXGFEII--FNSSKTRAEQEYYRKELEVETPFISE-NGSAIFIPKGYFPFDVKGKEVGNYIVIELGIDKGKAA 100 (165) T ss_dssp HHHHHHHHTTEEEE--EBCSSCHHHHHHHHHHHTCCSCEEET-TTTEEECCTTCCC------CCCCCCEEECSCCHHHHH T ss_pred HHHHHHHHCCCEEE--EECCCCHHHHHHHHHHHCCCCCEEEE-CCCEEEECCCCEEECCCCHHHHHHHHHHHHHCHHHHH T ss_conf 99999998899999--99189889999999973456854860-8828984898343045425677899999651227799 Q ss_pred HHHHH-HHHCCCEE--EEECCHHHHHH Q ss_conf 99999-99789889--99859899999 Q gi|254780128|r 70 SEIEE-LRRRGQRV--KVLVSMEEVDN 93 (103) Q Consensus 70 ~~~~~-l~~~G~~~--~Vv~s~edv~~ 93 (103) ..+-. +...+... ++-||..|+.- T Consensus 101 ~~l~~~l~~~~~~~~~~~GD~~ND~~m 127 (165) T 2zos_A 101 KILLDFYKRLGQIESYAVGDSYNDFPX 127 (165) T ss_dssp HHHHHHHHTTSCEEEEEEECSGGGHHH T ss_pred HHHHHHHCCCCHHEEEEEECCHHHHHH T ss_conf 999998549992109999197857999 Done!