HHsearch results for GI: 254780128 and protein with PDBid: 1hh1_A
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=96.73 E-value=0.0071 Score=38.01 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEE-CCCC--CCCCEEEEECCCCCEEEEEEECCCC-----CCCHHHHHHHHHH-HHCCCE
Q ss_conf 99999999999997898999981-1888--9874399990698299999976898-----8688999999999-978988
Q gi|254780128|r 11 EKDVEKRLVTGAKKLDCWVRKAS-FVGR--RGCPDRLIITPNGGLWWIEVKKPTG-----RLSHQQMSEIEEL-RRRGQR 81 (103)
Q Consensus 11 E~~ie~~l~~~lk~~G~~~~K~~-~~g~--~GvPDli~~~~~g~~~fIEvK~~~g-----kls~~Q~~~~~~l-~~~G~~ 81 (103)
=...|+.+++.+...|+.|.+.. |++. .-.||++... ++..+-||||+..+ .++++|..-+..+ +..|..
T Consensus 8 G~~~ERelv~~l~~~Gf~v~R~p~SG~~~~~~~pDivA~~-~~~~~~IEvKs~k~~~~~lyv~~eqve~L~~f~~~fg~~ 86 (143)
T 1hh1_A 8 GSAVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGS 86 (143)
T ss_dssp -CHHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEC-CCEEEEEEEEECCCCCCEEEECHHHHHHHHHHHHHCCCE
T ss_conf 4499999999998599408980345788878887389854-986999999981488611776799999999999974998
Q ss_pred EEEEC
Q ss_conf 99985
Q gi|254780128|r 82 VKVLV 86 (103)
Q Consensus 82 ~~Vv~ 86 (103)
..++.
T Consensus 87 ~~iav 91 (143)
T 1hh1_A 87 LFLGV 91 (143)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999