HHSEARCH alignment of GI: 254780128 and SCOP domain: d1gefa_

Alignment
>d1gefa_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.07  E-value=0.0076  Score=36.39  Aligned_cols=74  Identities=20%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCC---CCHHHHHHHHHH-HHCCCEEEEE
Q ss_conf             999999999999997898999981188898743999906982999999768988---688999999999-9789889998
Q gi|254780128|r   10 TEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGR---LSHQQMSEIEEL-RRRGQRVKVL   85 (103)
Q Consensus        10 ~E~~ie~~l~~~lk~~G~~~~K~~~~g~~GvPDli~~~~~g~~~fIEvK~~~gk---ls~~Q~~~~~~l-~~~G~~~~Vv   85 (103)
                      +=+..|+.+++.+..+|+.+...-   .+|-||++... ++..+-||||+....   .+++|....-.. +..|....|+
T Consensus         4 KG~~~ERel~~~l~~~G~~~~R~~---~sg~~D~~a~~-~~~~~~IEvK~~~~~~~~~~~~~~eql~~~a~~~g~~P~la   79 (120)
T d1gefa_           4 KGAQAERELIKLLEKHGFAVVRSA---GSKKVDLVAGN-GKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLA   79 (120)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEBG---GGSSCSEEEEC-SSCEEEEEEEEESSSCEEECHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEECC---CCCCCCCCCCC-CCCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf             343999999999986797699987---87788721378-88369998377104652429999999999998579936999


Q ss_pred             CC
Q ss_conf             59
Q gi|254780128|r   86 VS   87 (103)
Q Consensus        86 ~s   87 (103)
                      .-
T Consensus        80 ~K   81 (120)
T d1gefa_          80 VK   81 (120)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Hjc-like
domain: Archaeal Holliday junction resolvase Hjc
species: Archaeon Pyrococcus furiosus [TaxId: 2261]