HHSEARCH alignment of GI: 254780128 and SCOP domain: d1hh1a_

Alignment

Probab=97.01  E-value=0.0017  Score=40.33  Aligned_cols=73  Identities=26%  Similarity=0.358  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCC---CCCCCEEEEECCCCCEEEEEEECCCC-----CCCHHHHHHHHHH-HHCCCEEE
Q ss_conf             999999999997898999981188---89874399990698299999976898-----8688999999999-97898899
Q gi|254780128|r   13 DVEKRLVTGAKKLDCWVRKASFVG---RRGCPDRLIITPNGGLWWIEVKKPTG-----RLSHQQMSEIEEL-RRRGQRVK   83 (103)
Q Consensus        13 ~ie~~l~~~lk~~G~~~~K~~~~g---~~GvPDli~~~~~g~~~fIEvK~~~g-----kls~~Q~~~~~~l-~~~G~~~~   83 (103)
                      ..|+.++..+...|+.|.+..+.|   ..=.||++... ++.++-||||+..+     .++..|..-+..+ +..|....
T Consensus         2 ~~ERel~~~l~~~gFavvRapgSGs~~~~~~pDlvA~~-~~~~~~IEvKst~~~~~~iyi~~eqve~L~~f~~~fG~~p~   80 (132)
T d1hh1a_           2 AVERNIVSRLRDKGFAVVRAPASGSKRKDPIPDIIALK-NGVIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLF   80 (132)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCC-------CCCSEEEEE-TTEEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECC-CCEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCEEE
T ss_conf             78999999998589449994567888778998689526-98799999986157764389879999999999997599599


Q ss_pred             EEC
Q ss_conf             985
Q gi|254780128|r   84 VLV   86 (103)
Q Consensus        84 Vv~   86 (103)
                      ++.
T Consensus        81 iav   83 (132)
T d1hh1a_          81 LGV   83 (132)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Hjc-like
domain: Archaeal Holliday junction resolvase Hjc
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]