HHSEARCH alignment of GI: 254780128 and SCOP domain: d1rzna_

Alignment
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Probab=94.44  E-value=0.19  Score=28.01  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEECC---------------------CCCCCCEEEEECCCCCEEEEEEECCCC-------
Q ss_conf             9999999999999789899998118---------------------889874399990698299999976898-------
Q gi|254780128|r   11 EKDVEKRLVTGAKKLDCWVRKASFV---------------------GRRGCPDRLIITPNGGLWWIEVKKPTG-------   62 (103)
Q Consensus        11 E~~ie~~l~~~lk~~G~~~~K~~~~---------------------g~~GvPDli~~~~~g~~~fIEvK~~~g-------   62 (103)
                      |..|......+..+.-+.+.|.-.|                     ..+.-||...++ .|+++..|.|...+       
T Consensus         3 E~~In~tn~~Y~~~~~A~I~K~PtPi~~vkv~~~~r~~~~I~~Ayf~~kSt~DY~Gvy-kG~~I~FEAKeT~nktsFpl~   81 (165)
T d1rzna_           3 EDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAYFKQSSTTDYNGIY-KGRYIDFEAKETKNKTSFPLQ   81 (165)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEECCCCEEC---------------CEECCCSSCSEEEEE-TTEEEEEEEEECCCSSEEEGG
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEE-CCEEEEEECCCCCCCCCCCHH
T ss_conf             8999999999997798999970788389962577666534444796357888702477-789999983354676722334


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             86889999999999789889998
Q gi|254780128|r   63 RLSHQQMSEIEELRRRGQRVKVL   85 (103)
Q Consensus        63 kls~~Q~~~~~~l~~~G~~~~Vv   85 (103)
                      ...++|...++.+.++|+.++++
T Consensus        82 ni~~HQi~~L~~~~~~gGI~F~i  104 (165)
T d1rzna_          82 NFHDHQIEHMKQVKAQDGICFVI  104 (165)
T ss_dssp             GSCHHHHHHHHHHHHTTCEEEEE
T ss_pred             HCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             37799999999999789989999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: RecU-like
domain: Recombination protein U (RecU)/PBP related factor A (PrfA)
species: Bacillus subtilis [TaxId: 1423]