HHSEARCH alignment of GI: 254780128 and SCOP domain: d1y1oa_

Alignment
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=94.03  E-value=0.23  Score=27.48  Aligned_cols=75  Identities=13%  Similarity=0.124  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHCCCEEEE---------EECCC------------CCCCCEEEEECCCCCEEEEEEECCC-C------
Q ss_conf             999999999999978989999---------81188------------8987439999069829999997689-8------
Q gi|254780128|r   11 EKDVEKRLVTGAKKLDCWVRK---------ASFVG------------RRGCPDRLIITPNGGLWWIEVKKPT-G------   62 (103)
Q Consensus        11 E~~ie~~l~~~lk~~G~~~~K---------~~~~g------------~~GvPDli~~~~~g~~~fIEvK~~~-g------   62 (103)
                      |..|......+..+.-+.+.|         +..+.            .+.-||.+.++ .|+++..|.|... .      
T Consensus         4 E~~In~tn~~Y~~~~~A~I~K~ptPi~~vkvd~~~r~~a~i~~ayf~~kSt~DY~Gvy-~G~~I~FEAKeT~~ktsFpl~   82 (168)
T d1y1oa_           4 EDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFRQASTTDYNGVY-RGKYIDFEAKETKNKTAFPLK   82 (168)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEECCCCEEEEEEECCSSSCCEEEEEEECCCSSCSEEEEE-TTEEEEEEEEEECCSSEEEGG
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEE-CCEEEEEEEEECCCCCEECHH
T ss_conf             9999999999997797999970798389961577665644677796467988755675-565899996303688704533


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             868899999999997898899985
Q gi|254780128|r   63 RLSHQQMSEIEELRRRGQRVKVLV   86 (103)
Q Consensus        63 kls~~Q~~~~~~l~~~G~~~~Vv~   86 (103)
                      ..+++|...++.+.++|+.++++=
T Consensus        83 ni~~HQi~~L~~~~~~gGI~F~iI  106 (168)
T d1y1oa_          83 NFHAHQIRHMEQVVAHGGICFAIL  106 (168)
T ss_dssp             GSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             077999999999997899799999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: RecU-like
domain: Recombination protein U (RecU)/PBP related factor A (PrfA)
species: Bacillus stearothermophilus [TaxId: 1422]