RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} (A:113-217,A:389-474) Length = 191 Score = 28.6 bits (64), Expect = 0.30 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 11/58 (18%) Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEE 97 GL ++ + P GRL +M E+ + Q + + V ++D+ L E Sbjct: 126 GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNE 183 >1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418) Length = 211 Score = 27.9 bits (62), Expect = 0.46 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEELA 99 GL + V GR+S ++ + +L R Q++ +L + +D+ + L Sbjct: 144 GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLD 203 >3bz6_A A Conserved Protein Of Unknown Function {Pseudomonas Syringae Pv. Tomato Str. Dc3000} (A:) Length = 183 Score = 26.6 bits (59), Expect = 1.3 Identities = 9/26 (34%), Positives = 11/26 (42%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEELA 99 EL R R E+V + LE L Sbjct: 127 ELLTRSNRXHDFEDSEQVVHQLERLI 152 >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus} (A:376-505) Length = 130 Score = 26.4 bits (58), Expect = 1.3 Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 37 RRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLE 96 G P + + + + + + ++ + +R R ++ + ++E++ FL Sbjct: 74 EVGTPFAVTVDYD------TIGQ--SKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 125 Query: 97 EL 98 E Sbjct: 126 ER 127 >3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain, glycoprotein, hydrolase, membrane, phosphoprotein, transmembrane, cell adhesion; 1.70A {Mus musculus} PDB: 3kld_B* 3jxh_C (A:) Length = 269 Score = 26.5 bits (57), Expect = 1.4 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94 + + WI ++P +S+ Q+ + Q+ V +NF Sbjct: 211 SEIVEWIVFRRPV-PISYHQLEAFYSIFTTEQQDHVKSVEYLRNNF 255 >3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein; 2.40A {Prunus dulcis} PDB: 3ehk_A (A:1-365) Length = 365 Score = 26.1 bits (57), Expect = 1.6 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 43 RLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTL 102 II G L +++ + H++ + + + R Q+ + + N LEE C+L Sbjct: 302 NQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQ-----GEQLMANGLEETFCSL 356 >3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.12A {Salmonella typhimurium LT2} (A:211-305) Length = 95 Score = 26.2 bits (58), Expect = 1.7 Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELA 99 +GR I + R ++ L+ +++ +++L+ Sbjct: 59 SSGRTRPLDDRAIRFIERYQGKL-QLIDADKLG--IQDLS 95 >2j0j_A Focal adhesion kinase 1; cell migration, phosphorylation, FERM, transferase, ATP-binding, integrin signaling, nucleotide-binding; HET: 4ST; 2.8A {Gallus gallus} PDB: 2j0k_A* (A:222-343) Length = 122 Score = 25.9 bits (57), Expect = 2.1 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 31 KASFVGRRGCPDRLIITPNGGLWWIEVKK--PTGRLSHQQMSEIEELRRRGQRVKVLVSM 88 K + L I P G+ ++ K PT Q+ I+ + K ++ + Sbjct: 8 KCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQL 67 Query: 89 EEVDN 93 + Sbjct: 68 KIAGA 72 >1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} (A:) Length = 290 Score = 25.4 bits (54), Expect = 2.6 Identities = 8/45 (17%), Positives = 19/45 (42%) Query: 44 LIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSM 88 I + + + + +++ L+RR VKV++S+ Sbjct: 40 AIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISI 84 >3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} (A:1-343) Length = 343 Score = 25.4 bits (55), Expect = 2.9 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%) Query: 43 RLIITPNGGLWWIEVKKPTGRLSHQQMSEIEEL-RRRGQRVKVLVSMEEVDNFLEELACT 101 I+T GGL + R + ++ E+ + + N +EE CT Sbjct: 276 GAIVTVRGGLRIL--SPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICT 333 Query: 102 L 102 Sbjct: 334 A 334 >2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A* (A:71-461) Length = 391 Score = 25.1 bits (53), Expect = 3.8 Identities = 6/32 (18%), Positives = 15/32 (46%) Query: 63 RLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94 +++EI L+ +G V ++S ++ Sbjct: 11 DDIATRVAEINALKAQGDAVWPVLSYADIKAG 42 >3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain, alternative splicing, glycoprotein, hydrolase, membrane, polymorphism; 2.00A {Homo sapiens} (A:) Length = 272 Score = 24.6 bits (52), Expect = 4.1 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94 + WI K +S Q++ E+ Q V++ +NF Sbjct: 211 TDTVDWIVFKDTV-SISESQLAVFCEVLTMQQSGYVMLMDYLQNNF 255 >2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2} (A:218-311) Length = 94 Score = 24.3 bits (53), Expect = 5.6 Identities = 2/33 (6%), Positives = 8/33 (24%), Gaps = 1/33 (3%) Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92 G+ + + V++ + Sbjct: 59 GEGKCRALDERVERFASKITDNL-VVIDPKAYA 90 >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, transferase; 1.50A {Bacillus subtilis} (A:313-447) Length = 135 Score = 23.8 bits (51), Expect = 7.4 Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 3/55 (5%) Query: 4 YSFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVK 58 + + + + + G++ + I G K Sbjct: 84 NNVVITS-YMTNRGFYADKQSTFAPSFLLNIKGKKTSVVKDSILEQG--QLTVNK 135 >3hba_A Putative phosphosugar isomerase; YP_563707.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217} (A:199-292) Length = 94 Score = 24.0 bits (52), Expect = 7.8 Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%) Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92 + +I +++RG + + + D Sbjct: 63 IRDESYGSHVEQIANVKQRGANL-IHLHQTSAD 94 >3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:193-286) Length = 94 Score = 23.9 bits (52), Expect = 7.9 Identities = 2/33 (6%), Positives = 11/33 (33%), Gaps = 1/33 (3%) Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92 + + ++ G+++ ++ D Sbjct: 59 GLDETRPLEERALTFSKKYGKKL-TVLDAASYD 90 >2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A (A:1-293) Length = 293 Score = 23.6 bits (50), Expect = 9.1 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%) Query: 28 WVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVS 87 + +F G +L + ++V + L ++ E R + S Sbjct: 216 EFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIE------S 269 Query: 88 MEEVDNFLEELACTL 102 E +N LEE CTL Sbjct: 270 ESESENGLEETICTL 284 >2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus} (A:160-323) Length = 164 Score = 23.5 bits (51), Expect = 9.1 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%) Query: 37 RRGCPDRLIITPNGG-LWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVS----MEEV 91 PD ++ L+ +E K G ++ + EL V V+ E + Sbjct: 69 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENREAM 128 Query: 92 DNFLEELA 99 +L ELA Sbjct: 129 RQWLPELA 136 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.428 Gapped Lambda K H 0.267 0.0425 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 878,424 Number of extensions: 39062 Number of successful extensions: 149 Number of sequences better than 10.0: 1 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 35 Length of query: 103 Length of database: 4,956,049 Length adjustment: 61 Effective length of query: 42 Effective length of database: 2,893,944 Effective search space: 121545648 Effective search space used: 121545648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.8 bits)