RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
(103 letters)
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY
crystallography, heme, electron transport,
oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea}
(A:113-217,A:389-474)
Length = 191
Score = 28.6 bits (64), Expect = 0.30
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 11/58 (18%)
Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEE 97
GL ++ + P GRL +M E+ + Q + + V ++D+ L E
Sbjct: 126 GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNE 183
>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA;
sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET:
SRM; 2.80A {Mycobacterium tuberculosis H37RV}
(A:46-169,A:332-418)
Length = 211
Score = 27.9 bits (62), Expect = 0.46
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRR----------GQRVKVL-VSMEEVDNFLEELA 99
GL + V GR+S ++ + +L R Q++ +L + +D+ + L
Sbjct: 144 GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLD 203
>3bz6_A A Conserved Protein Of Unknown Function {Pseudomonas
Syringae Pv. Tomato Str. Dc3000} (A:)
Length = 183
Score = 26.6 bits (59), Expect = 1.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 74 ELRRRGQRVKVLVSMEEVDNFLEELA 99
EL R R E+V + LE L
Sbjct: 127 ELLTRSNRXHDFEDSEQVVHQLERLI 152
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus}
(A:376-505)
Length = 130
Score = 26.4 bits (58), Expect = 1.3
Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 37 RRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLE 96
G P + + + + + + ++ + +R R ++ + ++E++ FL
Sbjct: 74 EVGTPFAVTVDYD------TIGQ--SKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLR 125
Query: 97 EL 98
E
Sbjct: 126 ER 127
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like
domain, glycoprotein, hydrolase, membrane,
phosphoprotein, transmembrane, cell adhesion; 1.70A {Mus
musculus} PDB: 3kld_B* 3jxh_C (A:)
Length = 269
Score = 26.5 bits (57), Expect = 1.4
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
+ + WI ++P +S+ Q+ + Q+ V +NF
Sbjct: 211 SEIVEWIVFRRPV-PISYHQLEAFYSIFTTEQQDHVKSVEYLRNNF 255
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S
SEED storage protein; 2.40A {Prunus dulcis} PDB: 3ehk_A
(A:1-365)
Length = 365
Score = 26.1 bits (57), Expect = 1.6
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 43 RLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTL 102
II G L +++ + H++ + + + R Q+ + + N LEE C+L
Sbjct: 302 NQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQ-----GEQLMANGLEETFCSL 356
>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.12A {Salmonella typhimurium LT2}
(A:211-305)
Length = 95
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELA 99
+GR I + R ++ L+ +++ +++L+
Sbjct: 59 SSGRTRPLDDRAIRFIERYQGKL-QLIDADKLG--IQDLS 95
>2j0j_A Focal adhesion kinase 1; cell migration, phosphorylation,
FERM, transferase, ATP-binding, integrin signaling,
nucleotide-binding; HET: 4ST; 2.8A {Gallus gallus} PDB:
2j0k_A* (A:222-343)
Length = 122
Score = 25.9 bits (57), Expect = 2.1
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 31 KASFVGRRGCPDRLIITPNGGLWWIEVKK--PTGRLSHQQMSEIEELRRRGQRVKVLVSM 88
K + L I P G+ ++ K PT Q+ I+ + K ++ +
Sbjct: 8 KCALGSSWIISVELAIGPEEGISYLTDKGANPTHLADFNQVQTIQYSNSEDKDRKGMLQL 67
Query: 89 EEVDN 93
+
Sbjct: 68 KIAGA 72
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis}
(A:)
Length = 290
Score = 25.4 bits (54), Expect = 2.6
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 44 LIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSM 88
I + + + + +++ L+RR VKV++S+
Sbjct: 40 AIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISI 84
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin;
1.73A {Arachis hypogaea} (A:1-343)
Length = 343
Score = 25.4 bits (55), Expect = 2.9
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 43 RLIITPNGGLWWIEVKKPTGRLSHQQMSEIEEL-RRRGQRVKVLVSMEEVDNFLEELACT 101
I+T GGL + R + ++ E+ + + N +EE CT
Sbjct: 276 GAIVTVRGGLRIL--SPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICT 333
Query: 102 L 102
Sbjct: 334 A 334
>2dbn_A Hypothetical protein YBIU; alpha/beta structure,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; 1.70A
{Escherichia coli} PDB: 2dbi_A 2csg_A* (A:71-461)
Length = 391
Score = 25.1 bits (53), Expect = 3.8
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 63 RLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
+++EI L+ +G V ++S ++
Sbjct: 11 DDIATRVAEINALKAQGDAVWPVLSYADIKAG 42
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like
domain, alternative splicing, glycoprotein, hydrolase,
membrane, polymorphism; 2.00A {Homo sapiens} (A:)
Length = 272
Score = 24.6 bits (52), Expect = 4.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94
+ WI K +S Q++ E+ Q V++ +NF
Sbjct: 211 TDTVDWIVFKDTV-SISESQLAVFCEVLTMQQSGYVMLMDYLQNNF 255
>2a3n_A Putative glucosamine-fructose-6-phosphate
aminotransferase; 16423107, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.23A
{Salmonella typhimurium LT2} (A:218-311)
Length = 94
Score = 24.3 bits (53), Expect = 5.6
Identities = 2/33 (6%), Positives = 8/33 (24%), Gaps = 1/33 (3%)
Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92
G+ + + V++ +
Sbjct: 59 GEGKCRALDERVERFASKITDNL-VVIDPKAYA 90
>1oyg_A Levansucrase; glycoside hydrolase, beta-propeller,
transferase; 1.50A {Bacillus subtilis} (A:313-447)
Length = 135
Score = 23.8 bits (51), Expect = 7.4
Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 3/55 (5%)
Query: 4 YSFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVK 58
+ + + + + G++ + I G K
Sbjct: 84 NNVVITS-YMTNRGFYADKQSTFAPSFLLNIKGKKTSVVKDSILEQG--QLTVNK 135
>3hba_A Putative phosphosugar isomerase; YP_563707.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
(A:199-292)
Length = 94
Score = 24.0 bits (52), Expect = 7.8
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92
+ +I +++RG + + + D
Sbjct: 63 IRDESYGSHVEQIANVKQRGANL-IHLHQTSAD 94
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase;
NP_391141.1, structural genomics, joint center for
structural genomics, JCSG; HET: MSE FLC; 1.90A
{Bacillus subtilis} (A:193-286)
Length = 94
Score = 23.9 bits (52), Expect = 7.9
Identities = 2/33 (6%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 60 PTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVD 92
+ + ++ G+++ ++ D
Sbjct: 59 GLDETRPLEERALTFSKKYGKKL-TVLDAASYD 90
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A (A:1-293)
Length = 293
Score = 23.6 bits (50), Expect = 9.1
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 28 WVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVS 87
+ +F G +L + ++V + L ++ E R + S
Sbjct: 216 EFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIE------S 269
Query: 88 MEEVDNFLEELACTL 102
E +N LEE CTL
Sbjct: 270 ESESENGLEETICTL 284
>2ixs_A SDAI restriction endonuclease; hydrolase, domain
architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
(A:160-323)
Length = 164
Score = 23.5 bits (51), Expect = 9.1
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 37 RRGCPDRLIITPNGG-LWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVS----MEEV 91
PD ++ L+ +E K G ++ + EL V V+ E +
Sbjct: 69 HGRMPDLVLHDKVRKWLFLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENREAM 128
Query: 92 DNFLEELA 99
+L ELA
Sbjct: 129 RQWLPELA 136
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 878,424
Number of extensions: 39062
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 35
Length of query: 103
Length of database: 4,956,049
Length adjustment: 61
Effective length of query: 42
Effective length of database: 2,893,944
Effective search space: 121545648
Effective search space used: 121545648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)