RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A Length = 183 Score = 27.8 bits (62), Expect = 0.61 Identities = 9/26 (34%), Positives = 12/26 (46%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEELA 99 EL R R+ E+V + LE L Sbjct: 127 ELLTRSNRMHDFEDSEQVVHQLERLI 152 >3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain, alternative splicing, glycoprotein, hydrolase, membrane, polymorphism; 2.00A {Homo sapiens} Length = 272 Score = 27.1 bits (59), Expect = 1.1 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 51 GLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94 + WI K +S Q++ E+ Q V++ +NF Sbjct: 213 TVDWIVFKDTV-SISESQLAVFCEVLTMQQSGYVMLMDYLQNNF 255 >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genomics consortium, SGC, transferase; 2.55A {Homo sapiens} Length = 418 Score = 26.6 bits (58), Expect = 1.5 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 40 CPDRLIITPNGGLWWIEVKKPTGRLSHQQMSE-IEELRRRGQRVKVLVSM 88 P++ + P GG + + P G +Q+ + EL+RRG+R +VSM Sbjct: 356 PPEK--VNPLGGA--VALGHPLGCTGARQVITLLNELKRRGKRAYGVVSM 401 >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 Score = 26.4 bits (57), Expect = 1.8 Identities = 6/25 (24%), Positives = 13/25 (52%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98 E++ + + V EE+++ L L Sbjct: 540 EVKIKRTGEMLEVRKEELESTLSIL 564 >1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Score = 26.2 bits (57), Expect = 2.0 Identities = 7/25 (28%), Positives = 12/25 (48%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98 + RR KV ++ ++ L EL Sbjct: 387 VISRRDTGEKVTADLQGIEETLREL 411 >3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain, glycoprotein, hydrolase, membrane, phosphoprotein, transmembrane, cell adhesion; 1.70A {Mus musculus} PDB: 3kld_B* 3jxh_C Length = 269 Score = 26.0 bits (56), Expect = 2.4 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 49 NGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNF 94 + + WI ++P +S+ Q+ + Q+ V +NF Sbjct: 211 SEIVEWIVFRRPV-PISYHQLEAFYSIFTTEQQDHVKSVEYLRNNF 255 >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Score = 25.3 bits (54), Expect = 3.3 Identities = 6/25 (24%), Positives = 14/25 (56%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98 +R R ++ + ++E++ FL E Sbjct: 478 TVRDRDTMEQIRLHVDELEGFLRER 502 >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Score = 25.4 bits (55), Expect = 3.4 Identities = 6/25 (24%), Positives = 15/25 (60%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98 +LR R +K ++ + ++ +FL + Sbjct: 412 QLRSRDTTMKEMMHISKLRDFLVKY 436 >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Score = 25.1 bits (54), Expect = 4.0 Identities = 6/25 (24%), Positives = 14/25 (56%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98 LR R +K ++ + ++ +FL + Sbjct: 422 HLRSRDTTMKEMMHISKLKDFLIKY 446 >3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} Length = 344 Score = 25.2 bits (54), Expect = 4.2 Identities = 5/60 (8%), Positives = 12/60 (20%), Gaps = 3/60 (5%) Query: 42 DRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACT 101 I+ + +++ +G V LE + Sbjct: 247 PVSIVEEGFPVLGFA---AGDAAEAPLAEIADQIAAKGATVFATTGRVTRARVLEHVRSG 303 >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Score = 24.4 bits (52), Expect = 5.9 Identities = 6/25 (24%), Positives = 10/25 (40%) Query: 74 ELRRRGQRVKVLVSMEEVDNFLEEL 98 L RR K V ++ +E+ Sbjct: 354 TLFRRDTMEKFQVDETQLMEVVEKT 378 >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B Length = 266 Score = 23.7 bits (51), Expect = 9.4 Identities = 5/37 (13%), Positives = 17/37 (45%) Query: 64 LSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100 +S + + I ++ + ++V V V + +++ Sbjct: 46 VSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSL 82 >2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Length = 189 Score = 23.8 bits (51), Expect = 9.8 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 72 IEELRRRGQRVKVLVSMEEVDNFLEELACTL 102 ++ L V +++S EE + T Sbjct: 21 LQVLEELDFSVDLVISRNAKVVLKEEHSLTF 51 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.428 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 985,758 Number of extensions: 44526 Number of successful extensions: 224 Number of sequences better than 10.0: 1 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 28 Length of query: 103 Length of database: 5,693,230 Length adjustment: 68 Effective length of query: 35 Effective length of database: 4,044,638 Effective search space: 141562330 Effective search space used: 141562330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.3 bits)