BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing
protein [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780128|ref|YP_003064541.1| VRR-NUC domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  215 bits (548), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MSFYSFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKP 60
           MSFYSFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKP
Sbjct: 1   MSFYSFHYQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKP 60

Query: 61  TGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTLY 103
           TGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTLY
Sbjct: 61  TGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEELACTLY 103


>gi|254781194|ref|YP_003065607.1| hypothetical protein CLIBASIA_05505 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 98

 Score =  105 bits (263), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 63/93 (67%)

Query: 8   YQTEKDVEKRLVTGAKKLDCWVRKASFVGRRGCPDRLIITPNGGLWWIEVKKPTGRLSHQ 67
           Y +E  +EKRLV G+KKLDC V K  F+ +RGCPDRLIITPNG  +W+E+K   GRLS+ 
Sbjct: 5   YLSEAKLEKRLVKGSKKLDCLVFKTQFINQRGCPDRLIITPNGAHFWVEMKTSRGRLSNA 64

Query: 68  QMSEIEELRRRGQRVKVLVSMEEVDNFLEELAC 100
           Q   I  L    Q+V+VL S EEVD FL  L C
Sbjct: 65  QKRVIATLLLYHQKVQVLSSTEEVDGFLRMLEC 97


>gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 261

 Score = 24.3 bits (51), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 21  GAKKLDCWVRKASFVGRRGCPDRL 44
            A  L+C V++A F  RR C   L
Sbjct: 227 AATALECGVKEAVFCFRRACGQHL 250


>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 21.6 bits (44), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 39  GCPDRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEEL 98
           G P   ++     L  I V+K + +  H Q S+IE    +G RV V+  +  + N + E 
Sbjct: 88  GIPFATLLAERLNLPMIYVRKKSKK--HGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEF 145

Query: 99  A 99
            
Sbjct: 146 V 146


>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 307

 Score = 21.6 bits (44), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 38  RGCPDRLIITPNGG 51
           + C +  ++TPNGG
Sbjct: 293 KACGEAFLMTPNGG 306


>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 285

 Score = 21.6 bits (44), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 28 WVRKASFVGRRGCPDRLIITPNG-GLWW 54
          W++KA  +  +  P ++I   NG   WW
Sbjct: 62 WIKKAILLSFQINPTKIISDGNGYSTWW 89


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score = 20.8 bits (42), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 43  RLIITPNGGLWWI 55
           R ++ PNG LW I
Sbjct: 93  RRVLKPNGTLWVI 105


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 20.4 bits (41), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 42  DRLIITPNGGLWWIEVKKPTGRLSHQQMSEIEELRRRGQRVKVLVSMEEVDNFLEEL 98
           D  +  P+G   W+++K+       +    + ++++  + VK   + EEV +   +L
Sbjct: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK---TAEEVSSKANQL 506


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,821
Number of Sequences: 1233
Number of extensions: 2375
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 103
length of database: 328,796
effective HSP length: 62
effective length of query: 41
effective length of database: 252,350
effective search space: 10346350
effective search space used: 10346350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 32 (16.9 bits)