HHsearch alignment for GI: 254780129 and conserved domain: CHL00122
>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=97.39 E-value=0.0031 Score=37.76 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH---HHHHHHHHHHCCCCCCEE
Q ss_conf 71348999999999967981999689998899999999999740899489972331013---788999985155346069
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQ---YVWKDEVERWSAFSDMTV 79 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~---~~W~~e~~~~~~~~~~~~ 79 (220)
T Consensus 73 lg~r~~dvQl~gg~~Lh~G~iaEM~TGEGKTL~atlp-~ylnal~GkgvhvvTvNdYLA~RDae~m~~vy~~lGl---sv 148 (891)
T CHL00122 73 LGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLP-AYLNALTGKGVHIVTVNDYLARRDSEWMGQIYRFLGL---SV 148 (891)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCC---EE
T ss_conf 4897646999989998459524650688579999999-9999755997299806456568669999999998296---67
Q ss_pred EEEECC--CCCCCCCCCCCCCEE-EECHHHH----H----CCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 986112--101122345676627-8656673----1----00000000247200002512201
Q gi|254780129|r 80 SSLIGS--ERQRIKALNTPAHLY-IINFENI----P----WLVKMKLDHWDFATIVVDESTKL 131 (220)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~-i~~~~~l----~----~~~~~~~~~~~~~~iIiDEaH~~ 131 (220)
T Consensus 149 g~i~~~~~~~er~~aY~~--DItY~Tn~e~gFDyLRDnm~~~~~~-~vqr~~~~aIvDEvDSi 208 (891)
T CHL00122 149 GLIQEDMSIEERKQNYKA--DITYVTNSELGFDYLRDNMALSLSE-VVQRPFNYCIIDEVDSI 208 (891)
T ss_pred EEECCCCCHHHHHHHHCC--CCEEECCCCEECCCCCCCCCCCHHH-HHCCCCCEEEEECHHHH
T ss_conf 020899997999998358--9279788762225666332368788-40889973788640455