HHsearch alignment for GI: 254780129 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=99.97 E-value=1.6e-32 Score=205.90 Aligned_cols=194 Identities=28% Similarity=0.400 Sum_probs=149.1
Q ss_pred CCCCCHHHHHHHHHHHH-----CCCCEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 87134899999999996-----79819996899988999999999997408---99489972331013788999985155
Q gi|254780129|r 2 HLVLKPHQIVMVNWLLS-----HDRCALWASMGSGKTVSVLFALSTIKILD---PRPVLIIAPLRVAQYVWKDEVERWSA 73 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~~-----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~---~~~~LIi~P~s~~~~~W~~e~~~~~~ 73 (220)
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~n-w~~e~~k~~~ 414 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSN-WKREFEKFAP 414 (866)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH-HHHHHHHHCC
T ss_conf 011048899866999998776236877575233421999999987777640135787268714777767-9999986141
Q ss_pred CCCCEEEEEECCCC------CCCCCCCC-----CCCEEEECHHHHHCC--CCCCCCCCCCCCCCCCHHHCCCCCCCCCHH
Q ss_conf 34606998611210------11223456-----766278656673100--000000247200002512201365433203
Q gi|254780129|r 74 FSDMTVSSLIGSER------QRIKALNT-----PAHLYIINFENIPWL--VKMKLDHWDFATIVVDESTKLKSFRTHQGT 140 (220)
Q Consensus 74 ~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~i~~~~~l~~~--~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~ 140 (220)
T Consensus 415 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~----~s 489 (866)
T COG0553 415 DLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND----QS 489 (866)
T ss_pred HHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCH----HH
T ss_conf 2100-232115311210369999999862133010189999999997502055422367769899788754047----78
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHHCCHHHCCCC
Q ss_conf 6999999985137987998316532488899999999-8288853469999999961662420463
Q gi|254780129|r 141 KQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIW-FLDKGKRLGLSFKSFVERWFHTQQVGSS 205 (220)
Q Consensus 141 k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~~ll~-~l~p~~~~~~~~~~F~~~y~~~~~~~~~ 205 (220)
T Consensus 490 ~~~~~l~~~---~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~-~~~~~~~~f~~~~~~~~~~~~~ 551 (866)
T COG0553 490 SEGKALQFL---KALNRLDLTGTPLENRLGELWSLLQEFLNPG-LLGTSFAIFTRLFEKPIQAEED 551 (866)
T ss_pred HHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHCCHHHHHHH
T ss_conf 999999987---5543322899964560899999989985743-2662389999986016665432