HHsearch alignment for GI: 254780129 and conserved domain: COG0553

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=99.97  E-value=1.6e-32  Score=205.90  Aligned_cols=194  Identities=28%  Similarity=0.400  Sum_probs=149.1

Q ss_pred             CCCCCHHHHHHHHHHHH-----CCCCEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf             87134899999999996-----79819996899988999999999997408---99489972331013788999985155
Q gi|254780129|r    2 HLVLKPHQIVMVNWLLS-----HDRCALWASMGSGKTVSVLFALSTIKILD---PRPVLIIAPLRVAQYVWKDEVERWSA   73 (220)
Q Consensus         2 ~~~Lrp~Q~~a~~~~~~-----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~---~~~~LIi~P~s~~~~~W~~e~~~~~~   73 (220)
T Consensus       336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~n-w~~e~~k~~~  414 (866)
T COG0553         336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSN-WKREFEKFAP  414 (866)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH-HHHHHHHHCC
T ss_conf             011048899866999998776236877575233421999999987777640135787268714777767-9999986141


Q ss_pred             CCCCEEEEEECCCC------CCCCCCCC-----CCCEEEECHHHHHCC--CCCCCCCCCCCCCCCCHHHCCCCCCCCCHH
Q ss_conf             34606998611210------11223456-----766278656673100--000000247200002512201365433203
Q gi|254780129|r   74 FSDMTVSSLIGSER------QRIKALNT-----PAHLYIINFENIPWL--VKMKLDHWDFATIVVDESTKLKSFRTHQGT  140 (220)
Q Consensus        74 ~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~i~~~~~l~~~--~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~  140 (220)
T Consensus       415 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~----~s  489 (866)
T COG0553         415 DLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND----QS  489 (866)
T ss_pred             HHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCH----HH
T ss_conf             2100-232115311210369999999862133010189999999997502055422367769899788754047----78


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHHCCHHHCCCC
Q ss_conf             6999999985137987998316532488899999999-8288853469999999961662420463
Q gi|254780129|r  141 KQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIW-FLDKGKRLGLSFKSFVERWFHTQQVGSS  205 (220)
Q Consensus       141 k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~~ll~-~l~p~~~~~~~~~~F~~~y~~~~~~~~~  205 (220)
T Consensus       490 ~~~~~l~~~---~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~-~~~~~~~~f~~~~~~~~~~~~~  551 (866)
T COG0553         490 SEGKALQFL---KALNRLDLTGTPLENRLGELWSLLQEFLNPG-LLGTSFAIFTRLFEKPIQAEED  551 (866)
T ss_pred             HHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHCCHHHHHHH
T ss_conf             999999987---5543322899964560899999989985743-2662389999986016665432