HHsearch alignment for GI: 254780129 and conserved domain: COG1110

Probab=98.85  E-value=2.5e-08  Score=66.99  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=85.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCC-CEEEE-
Q ss_conf             1348999999999967981999689998899999999999740899489972331013788999985155346-06998-
Q gi|254780129|r    4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSD-MTVSS-   81 (220)
Q Consensus         4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~-~~~~~-   81 (220)
T Consensus        82 ~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~  160 (1187)
T COG1110          82 RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV  160 (1187)
T ss_pred             CCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             8607889999998737844898278876547999999998755-874999966789999999999998865378524665


Q ss_pred             EECCC--CC---CCC-CCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf             61121--01---122-3456766278656673100000000247200002512201
Q gi|254780129|r   82 LIGSE--RQ---RIK-ALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKL  131 (220)
Q Consensus        82 ~~~~~--~~---~~~-~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~  131 (220)
T Consensus       161 yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L-~~~kFdfifVDDVDA~  215 (1187)
T COG1110         161 YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL-SKLKFDFIFVDDVDAI  215 (1187)
T ss_pred             ECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH-CCCCCCEEEECCHHHH
T ss_conf             312366577999999986599639997478788669984-0457778998047889