HHsearch alignment for GI: 254780129 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.84 E-value=4e-20 Score=134.75 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=121.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 87134899999999996798199968999889999999999974089948997233101378899998515534606998
Q gi|254780129|r 2 HLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred CCCHHHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEE
T ss_conf 325889999999998644-8389952875079999999999987458848996589517999999999985898433231
Q ss_pred EECCCCCC-CCCCCCCCCEEEECHHHHHCCCC-CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH-HHHCCCCEEE
Q ss_conf 61121011-22345676627865667310000-000024720000251220136543320369999999-8513798799
Q gi|254780129|r 82 LIGSERQR-IKALNTPAHLYIINFENIPWLVK-MKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGK-VAFSKVKRFI 158 (220)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~i~~~~~l~~~~~-~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~-~~~~~~~~~l 158 (220)
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG-----nyAYv~Va~~y~~~~k~~~il 166 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG-----NYAYVFVAKEYLRSAKNPLIL 166 (542)
T ss_pred ECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCC-----CCHHHHHHHHHHHHCCCCEEE
T ss_conf 117778688999875177899563877768761766767805898623554137-----606999999999825684379
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 831653248889999999982
Q gi|254780129|r 159 ELTGTPSPNGLIDLWGQIWFL 179 (220)
Q Consensus 159 ~LTgTPi~n~~~el~~ll~~l 179 (220)
T Consensus 167 gLTASPGs-~~ekI~eV~~nL 186 (542)
T COG1111 167 GLTASPGS-DLEKIQEVVENL 186 (542)
T ss_pred EEECCCCC-CHHHHHHHHHHC
T ss_conf 87238999-879999999837