HHsearch alignment for GI: 254780129 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=99.70 E-value=2.5e-16 Score=112.89 Aligned_cols=171 Identities=22% Similarity=0.231 Sum_probs=121.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHCC-C-----CCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 71348999999999967981999689998899999-9999997408-9-----948997233101378899998515534
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKILD-P-----RPVLIIAPLRVAQYVWKDEVERWSAFS 75 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~~-~-----~~~LIi~P~s~~~~~W~~e~~~~~~~~ 75 (220)
T Consensus 21 ~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~ 100 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL 100 (814)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 89987899999998589846998689997379999999999986068888885699995707888789999999999975
Q ss_pred CCEEEEEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCC-----CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 606998611210--11223456766278656673100000-----00024720000251220136543320369999999
Q gi|254780129|r 76 DMTVSSLIGSER--QRIKALNTPAHLYIINFENIPWLVKM-----KLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGK 148 (220)
Q Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~-----~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~ 148 (220)
T Consensus 101 G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~--sKRG~~Lsl~LeR 176 (814)
T COG1201 101 GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAE--SKRGVQLALSLER 176 (814)
T ss_pred CCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHC--CCCEEEEEHHHHHHC--CCCCHHHHHHHHH
T ss_conf 984444228788677630469999689958348999836888999860--780999512545434--5653134332999
Q ss_pred HHHCC-CCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 85137-98799831653248889999999982888
Q gi|254780129|r 149 VAFSK-VKRFIELTGTPSPNGLIDLWGQIWFLDKG 182 (220)
Q Consensus 149 ~~~~~-~~~~l~LTgTPi~n~~~el~~ll~~l~p~ 182 (220)
T Consensus 177 L~~l~~~~qRIGLSATV~--~~~~v---arfL~g~ 206 (814)
T COG1201 177 LRELAGDFQRIGLSATVG--PPEEV---AKFLVGF 206 (814)
T ss_pred HHHHCCCCEEEEEHHCCC--CHHHH---HHHHCCC
T ss_conf 985175537975402158--88999---9985478