HHsearch alignment for GI: 254780129 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=98.53 E-value=1.1e-06 Score=57.58 Aligned_cols=161 Identities=11% Similarity=0.068 Sum_probs=78.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH-HHCCCCCCEEEEEECCCCC
Q ss_conf 999999996798199968999889999999999974089948997233101378899998-5155346069986112101
Q gi|254780129|r 10 IVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVE-RWSAFSDMTVSSLIGSERQ 88 (220)
Q Consensus 10 ~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~-~~~~~~~~~~~~~~~~~~~ 88 (220)
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~----~VGY~iR 131 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGE----TVGYSIR 131 (845)
T ss_pred HHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC----EEEEEEE
T ss_conf 999999986978998679988758788999996001668759965843899999999999983898676----5437999
Q ss_pred CCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH-HCC-CCEEEEECCCCCC
Q ss_conf 12234567662786566731000000002472000025122013654332036999999985-137-9879983165324
Q gi|254780129|r 89 RIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA-FSK-VKRFIELTGTPSP 166 (220)
Q Consensus 89 ~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~-~~~-~~~~l~LTgTPi~ 166 (220)
T Consensus 132 fe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-Sl---~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 132 FESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-SL---NTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred EECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH-HH---HHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 6226787714689514799999843802045877997013355-68---8899999999998646887059997253588
Q ss_pred CCHHHHHHHHHH
Q ss_conf 888999999998
Q gi|254780129|r 167 NGLIDLWGQIWF 178 (220)
Q Consensus 167 n~~~el~~ll~~ 178 (220)
T Consensus 208 ~rfs~~f~~apv 219 (845)
T COG1643 208 ERFSAYFGNAPV 219 (845)
T ss_pred HHHHHHCCCCCE
T ss_conf 999976289987