HHsearch alignment for GI: 254780129 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.76 E-value=1.2e-18 Score=126.23 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=101.9
Q ss_pred CCCCCHHHHHHHHHHHH-----CCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 87134899999999996-----7981999689998899999999999-74089948997233101378899998515534
Q gi|254780129|r 2 HLVLKPHQIVMVNWLLS-----HDRCALWASMGSGKTVSVLFALSTI-KILDPRPVLIIAPLRVAQYVWKDEVERWSAFS 75 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~~-----~~~~~l~~~~G~GKT~~ai~~~~~~-~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~ 75 (220)
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 33622788999999999986687448999705888523199999999961414305676126789999999999639886
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEECHHHHHCCCCCC------CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 606998611210112234567662786566731000000------00247200002512201365433203699999998
Q gi|254780129|r 76 DMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMK------LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKV 149 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~------~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~ 149 (220)
T Consensus 243 ~~-~n~i~~~~------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR--g-----i~~~~~~I~-- 306 (875)
T COG4096 243 TK-MNKIEDKK------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR--G-----IYSEWSSIL-- 306 (875)
T ss_pred CC-EEEECCCC------CCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH--H-----HHHHHHHHH--
T ss_conf 40-12320146------78630588760377875640654565567888312899606666--6-----787667898--
Q ss_pred HHCCCCEEEEECCCCCC
Q ss_conf 51379879983165324
Q gi|254780129|r 150 AFSKVKRFIELTGTPSP 166 (220)
Q Consensus 150 ~~~~~~~~l~LTgTPi~ 166 (220)
T Consensus 307 -dYFdA~~~gLTATP~~ 322 (875)
T COG4096 307 -DYFDAATQGLTATPKE 322 (875)
T ss_pred -HHHHHHHHHHCCCCCC
T ss_conf -8999988761257621