HHsearch alignment for GI: 254780129 and conserved domain: COG4889

>COG4889 Predicted helicase [General function prediction only].
Probab=99.66  E-value=1.1e-16  Score=114.90  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=91.8

Q ss_pred             CCCCHHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC--CCC
Q ss_conf             7134899999999996----7981999689998899999999999740899489972331013788999985155--346
Q gi|254780129|r    3 LVLKPHQIVMVNWLLS----HDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSA--FSD   76 (220)
Q Consensus         3 ~~Lrp~Q~~a~~~~~~----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~--~~~   76 (220)
T Consensus       160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~a  236 (1518)
T COG4889         160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFRA  236 (1518)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHH---HHEEEECCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             89983678999999862551667758983378862137889999864---023654351899999999885346655125


Q ss_pred             CEEEEEECCCC--CCCC-------------C---------CCCCCCEEEECHHHHHCCCCC-CCCCCCCCCCCCCHHHCC
Q ss_conf             06998611210--1122-------------3---------456766278656673100000-000247200002512201
Q gi|254780129|r   77 MTVSSLIGSER--QRIK-------------A---------LNTPAHLYIINFENIPWLVKM-KLDHWDFATIVVDESTKL  131 (220)
Q Consensus        77 ~~~~~~~~~~~--~~~~-------------~---------~~~~~~~~i~~~~~l~~~~~~-~~~~~~~~~iIiDEaH~~  131 (220)
T Consensus       237 ~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRT  316 (1518)
T COG4889         237 SAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRT  316 (1518)
T ss_pred             EEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHCC
T ss_conf             78863652344412321204788875749999999987533378389997021148789999749997537974400014


Q ss_pred             CCCCC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             36543--320369999999851379879983165324
Q gi|254780129|r  132 KSFRT--HQGTKQTRALGKVAFSKVKRFIELTGTPSP  166 (220)
Q Consensus       132 kn~~~--~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~  166 (220)
T Consensus       317 tGa~~a~dd~saFt~-vHs~~niKa~kRlYmTATPki  352 (1518)
T COG4889         317 TGATLAGDDKSAFTR-VHSDQNIKAAKRLYMTATPKI  352 (1518)
T ss_pred             CCCEECCCCCCCCEE-ECCCCCHHHHHHHHCCCCCHH
T ss_conf             462322577201045-337641588876660068602