HHsearch alignment for GI: 254780129 and conserved domain: COG4889
>COG4889 Predicted helicase [General function prediction only].
Probab=99.66 E-value=1.1e-16 Score=114.90 Aligned_cols=160 Identities=19% Similarity=0.200 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC--CCC
Q ss_conf 7134899999999996----7981999689998899999999999740899489972331013788999985155--346
Q gi|254780129|r 3 LVLKPHQIVMVNWLLS----HDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSA--FSD 76 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~--~~~ 76 (220)
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~a 236 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFRA 236 (1518)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHH---HHEEEECCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 89983678999999862551667758983378862137889999864---023654351899999999885346655125
Q ss_pred CEEEEEECCCC--CCCC-------------C---------CCCCCCEEEECHHHHHCCCCC-CCCCCCCCCCCCCHHHCC
Q ss_conf 06998611210--1122-------------3---------456766278656673100000-000247200002512201
Q gi|254780129|r 77 MTVSSLIGSER--QRIK-------------A---------LNTPAHLYIINFENIPWLVKM-KLDHWDFATIVVDESTKL 131 (220)
Q Consensus 77 ~~~~~~~~~~~--~~~~-------------~---------~~~~~~~~i~~~~~l~~~~~~-~~~~~~~~~iIiDEaH~~ 131 (220)
T Consensus 237 ~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 237 SAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCHHCC
T ss_conf 78863652344412321204788875749999999987533378389997021148789999749997537974400014
Q ss_pred CCCCC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 36543--320369999999851379879983165324
Q gi|254780129|r 132 KSFRT--HQGTKQTRALGKVAFSKVKRFIELTGTPSP 166 (220)
Q Consensus 132 kn~~~--~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~ 166 (220)
T Consensus 317 tGa~~a~dd~saFt~-vHs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 317 TGATLAGDDKSAFTR-VHSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred CCCEECCCCCCCCEE-ECCCCCHHHHHHHHCCCCCHH
T ss_conf 462322577201045-337641588876660068602