HHsearch alignment for GI: 254780129 and conserved domain: KOG0339
>KOG0339 consensus.
Probab=98.28 E-value=3.9e-06 Score=54.38 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH-HHHHHH-----HCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 89999999999679819996899988999999-999997-----4089948-9972331013788999985155346069
Q gi|254780129|r 7 PHQIVMVNWLLSHDRCALWASMGSGKTVSVLF-ALSTIK-----ILDPRPV-LIIAPLRVAQYVWKDEVERWSAFSDMTV 79 (220)
Q Consensus 7 p~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~-~~~~~~-----~~~~~~~-LIi~P~s~~~~~W~~e~~~~~~~~~~~~ 79 (220)
T Consensus 248 piq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~ 327 (731)
T KOG0339 248 PIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRV 327 (731)
T ss_pred CCCCCCCCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 52334355224665211112115750567777777774140520689997699980638999999999998631126427
Q ss_pred EEEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCCCC-CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 98611210--1122345676627865667310000000-02472000025122013654332036999999985137987
Q gi|254780129|r 80 SSLIGSER--QRIKALNTPAHLYIINFENIPWLVKMKL-DHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKR 156 (220)
Q Consensus 80 ~~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~~~-~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~ 156 (220)
T Consensus 328 v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG---fe~qVrSI~~hi-rpdrQ 403 (731)
T KOG0339 328 VAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG---FEPQVRSIKQHI-RPDRQ 403 (731)
T ss_pred EEEECCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEECHHHHHCCC---CHHHHHHHHHHC-CCCCE
T ss_conf 88636874888777650277289966288899988603331003578871111131265---479899998644-88642
Q ss_pred EEEECCCCCCCCHH
Q ss_conf 99831653248889
Q gi|254780129|r 157 FIELTGTPSPNGLI 170 (220)
Q Consensus 157 ~l~LTgTPi~n~~~ 170 (220)
T Consensus 404 tllFsaT-f~~kIe 416 (731)
T KOG0339 404 TLLFSAT-FKKKIE 416 (731)
T ss_pred EEEEECC-CHHHHH
T ss_conf 7986031-068899