HHsearch alignment for GI: 254780129 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.53  E-value=4.6e-13  Score=94.18  Aligned_cols=166  Identities=14%  Similarity=0.211  Sum_probs=107.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHCC--------CCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             1348999999999967981999689998899999-9999997408--------994899723310137889999851553
Q gi|254780129|r    4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKILD--------PRPVLIIAPLRVAQYVWKDEVERWSAF   74 (220)
Q Consensus         4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~~--------~~~~LIi~P~s~~~~~W~~e~~~~~~~   74 (220)
T Consensus       106 ~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~  185 (472)
T PRK01297        106 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY  185 (472)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             99999999999997699889989998679999999999999717751011368952999879999999999999997462


Q ss_pred             CCCEEEEEECCCC--CCCCCC-CCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             4606998611210--112234-567662786566731000000-002472000025122013654332036999999985
Q gi|254780129|r   75 SDMTVSSLIGSER--QRIKAL-NTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA  150 (220)
Q Consensus        75 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~  150 (220)
T Consensus       186 ~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD~LLd~gf~--~~v~~Il~~~p  263 (472)
T PRK01297        186 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFI--PQVRQIIRQTP  263 (472)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHHHHHCCCCH--HHHHHHHHHCC
T ss_conf             7976999978988799999985589988997979999874348254255229999873121025759--99999999689


Q ss_pred             HCCCCEEEEECCCCCCCCHHHH
Q ss_conf             1379879983165324888999
Q gi|254780129|r  151 FSKVKRFIELTGTPSPNGLIDL  172 (220)
Q Consensus       151 ~~~~~~~l~LTgTPi~n~~~el  172 (220)
T Consensus       264 ~~~~rQ~~lfSATl-~~~v~~l  284 (472)
T PRK01297        264 RKEERQTLLFSATF-TDDVMNL  284 (472)
T ss_pred             CCCCCEEEEEECCC-CHHHHHH
T ss_conf             85571699985257-7899999