HHsearch alignment for GI: 254780129 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.53 E-value=4.6e-13 Score=94.18 Aligned_cols=166 Identities=14% Similarity=0.211 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHCC--------CCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 1348999999999967981999689998899999-9999997408--------994899723310137889999851553
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKILD--------PRPVLIIAPLRVAQYVWKDEVERWSAF 74 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~~--------~~~~LIi~P~s~~~~~W~~e~~~~~~~ 74 (220)
T Consensus 106 ~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~ 185 (472)
T PRK01297 106 YCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKY 185 (472)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999997699889989998679999999999999717751011368952999879999999999999997462
Q ss_pred CCCEEEEEECCCC--CCCCCC-CCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4606998611210--112234-567662786566731000000-002472000025122013654332036999999985
Q gi|254780129|r 75 SDMTVSSLIGSER--QRIKAL-NTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA 150 (220)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~ 150 (220)
T Consensus 186 ~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD~LLd~gf~--~~v~~Il~~~p 263 (472)
T PRK01297 186 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFI--PQVRQIIRQTP 263 (472)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHHHHHCCCCH--HHHHHHHHHCC
T ss_conf 7976999978988799999985589988997979999874348254255229999873121025759--99999999689
Q ss_pred HCCCCEEEEECCCCCCCCHHHH
Q ss_conf 1379879983165324888999
Q gi|254780129|r 151 FSKVKRFIELTGTPSPNGLIDL 172 (220)
Q Consensus 151 ~~~~~~~l~LTgTPi~n~~~el 172 (220)
T Consensus 264 ~~~~rQ~~lfSATl-~~~v~~l 284 (472)
T PRK01297 264 RKEERQTLLFSATF-TDDVMNL 284 (472)
T ss_pred CCCCCEEEEEECCC-CHHHHHH
T ss_conf 85571699985257-7899999