HHsearch alignment for GI: 254780129 and conserved domain: PRK04296
>PRK04296 thymidine kinase; Provisional.
Probab=96.97 E-value=0.016 Score=33.57 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=62.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 99968999889999999999974089948997233101378899998515534606998611210112234567662786
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYII 102 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 102 (220)
T Consensus 6 ~i~GpMfSGKTteLi~~~~~~~~-~gkkvl~~kp~~D~R---------y~---~~~I~Sh~g~~~--------~-~~~v~ 63 (197)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFTPAIDDR---------YG---EGKVVSRIGLSR--------E-AILIS 63 (197)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH-CCCEEEEEEECCCCC---------CC---CCCEECCCCCEE--------E-EEEEC
T ss_conf 99934278889999999999998-799599998534465---------77---785786789834--------6-89948
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 56673100000000247200002512201365433203699999998513798--7998316532488899999999828
Q gi|254780129|r 103 NFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVK--RFIELTGTPSPNGLIDLWGQIWFLD 180 (220)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~--~~l~LTgTPi~n~~~el~~ll~~l~ 180 (220)
T Consensus 64 ~~~~i~~~~~~~~~~~~~dvI~IDEaQFf~~------~~i~~~~~~~-~~~~~~Viv~GLd~Df~~~~F~~~~~Li~~Ad 136 (197)
T PRK04296 64 SDTDIFELIEEEHEGGKIDCVLIDEAQFLDK------EQVVQLAEVV-DDLGIPVICYGLDTDFRGEPFEGSPYLLALAD 136 (197)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEECCHHCCCH------HHHHHHHHHH-HHCCCEEEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 7899999998763047856899720212798------9999999999-83185899976503302486543999997268