HHsearch alignment for GI: 254780129 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.47 E-value=0.055 Score=30.56 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=63.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHH-HCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 9996899988999999999997-4089948-9972331013788999985155346069986112101122345676627
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTIK-ILDPRPV-LIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLY 100 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~~-~~~~~~~-LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (220)
T Consensus 214 alVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRig--A~eQLk~Ya~ilgvp~~-------------------v 272 (412)
T PRK05703 214 ALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIG--AVEQLKTYAKIMGIPVK-------------------V 272 (412)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HHHHHHHHHHHCCCEEE-------------------E
T ss_conf 99888887567699999999999729981799983767777--99999999997197379-------------------8
Q ss_pred EECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 86566731000000002472000025122013654332036999999985137987998316532488899999999828
Q gi|254780129|r 101 IINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD 180 (220)
Q Consensus 101 i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~ 180 (220)
T Consensus 273 ~~~~~~l~~al~~~---~~~dlILIDTaG~--s~~d~~~~~eL~~~~~~~-~~~~~~LVlsat~~~~dl~~i~~~f~~~~ 346 (412)
T PRK05703 273 AYDPKELAKALEQL---ANCDLILIDTAGR--SQRDPRLISELKALIENS-KPIDVYLVLSATTKYRDLKDIVKHFSRLP 346 (412)
T ss_pred ECCHHHHHHHHHHH---CCCCEEEEECCCC--CCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 47999999999871---5899799968988--978999999999998624-88718999759899899999999846799
Q ss_pred CC
Q ss_conf 88
Q gi|254780129|r 181 KG 182 (220)
Q Consensus 181 p~ 182 (220)
T Consensus 347 ~~ 348 (412)
T PRK05703 347 LD 348 (412)
T ss_pred CC
T ss_conf 98