HHsearch alignment for GI: 254780129 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.05 E-value=0.24 Score=26.93 Aligned_cols=128 Identities=11% Similarity=0.086 Sum_probs=58.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 999689998899999999999740899489972-3310137889999851553460699861121011223456766278
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTIKILDPRPVLIIA-PLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYI 101 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~-P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (220)
T Consensus 79 ~lvG~~G~GKTTT~AKLA~~~~~~-~~kV~lia~Dt--yR~aA~eQLk~~a~~l~v~~~~~~------------------ 137 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH--SRIGTVQQLQDYVKTIGFEVIAVR------------------ 137 (270)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECC--CCHHHHHHHHHHHHHHCCCEECCC------------------
T ss_conf 998889898899999999999867-99089998388--888899999999998199535458------------------
Q ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH-HCCCC-EEEEECCCCCCCCHHHHHHHHH
Q ss_conf 6566731000000002472000025122013654332036999999985-13798-7998316532488899999999
Q gi|254780129|r 102 INFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA-FSKVK-RFIELTGTPSPNGLIDLWGQIW 177 (220)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~-~~~~~-~~l~LTgTPi~n~~~el~~ll~ 177 (220)
T Consensus 138 -~~~~~~~~~~~~~~~~~~DvilIDTAGR~~~-----d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f~ 209 (270)
T PRK06731 138 -DEAAMTRALTYFKEEARVDYILIDTAGKNYR-----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred -CHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf -8789999999999976999999979998714-----69999999998606389879999868777699999999807