HHsearch alignment for GI: 254780129 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.05  E-value=0.24  Score=26.93  Aligned_cols=128  Identities=11%  Similarity=0.086  Sum_probs=58.3

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf             999689998899999999999740899489972-3310137889999851553460699861121011223456766278
Q gi|254780129|r   23 ALWASMGSGKTVSVLFALSTIKILDPRPVLIIA-PLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYI  101 (220)
Q Consensus        23 ~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~-P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  101 (220)
T Consensus        79 ~lvG~~G~GKTTT~AKLA~~~~~~-~~kV~lia~Dt--yR~aA~eQLk~~a~~l~v~~~~~~------------------  137 (270)
T PRK06731         79 ALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH--SRIGTVQQLQDYVKTIGFEVIAVR------------------  137 (270)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECC--CCHHHHHHHHHHHHHHCCCEECCC------------------
T ss_conf             998889898899999999999867-99089998388--888899999999998199535458------------------


Q ss_pred             ECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH-HCCCC-EEEEECCCCCCCCHHHHHHHHH
Q ss_conf             6566731000000002472000025122013654332036999999985-13798-7998316532488899999999
Q gi|254780129|r  102 INFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA-FSKVK-RFIELTGTPSPNGLIDLWGQIW  177 (220)
Q Consensus       102 ~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~-~~~~~-~~l~LTgTPi~n~~~el~~ll~  177 (220)
T Consensus       138 -~~~~~~~~~~~~~~~~~~DvilIDTAGR~~~-----d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f~  209 (270)
T PRK06731        138 -DEAAMTRALTYFKEEARVDYILIDTAGKNYR-----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK  209 (270)
T ss_pred             -CHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-----CHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf             -8789999999999976999999979998714-----69999999998606389879999868777699999999807