HHsearch alignment for GI: 254780129 and conserved domain: PRK06872

>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=97.30  E-value=0.0053  Score=36.40  Aligned_cols=142  Identities=17%  Similarity=0.149  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHCC---CCEEEECC-CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             89999999999679---81999689-998899999999999740899489972331013788999985155346069986
Q gi|254780129|r    7 PHQIVMVNWLLSHD---RCALWASM-GSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSL   82 (220)
Q Consensus         7 p~Q~~a~~~~~~~~---~~~l~~~~-G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~   82 (220)
T Consensus        22 ~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~-~~~--~~pcg~c~~--c~~i~~---g~~~d~~ei   93 (696)
T PRK06872         22 EHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVH-GVT--ATPCGECEN--CKAIEE---GNFIDLIEI   93 (696)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCC--CCCCCCCHH--HHHHHC---CCCCCEEEE
T ss_conf             999999999997198630475117898888899999999867899-999--997888622--576744---787754675


Q ss_pred             ECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             11210112234567662786566731000000002472000025122013654332036999999985137987998316
Q gi|254780129|r   83 IGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTG  162 (220)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTg  162 (220)
T Consensus        94 daas~~~v~~----------~r~l~~~-~~~~p~~~~~kvy~idevhmls-------~~~fnallktleepp~~v~f~la  155 (696)
T PRK06872         94 DAASRTKVED----------TRELLDN-VQYKPVVGRFKVYLIDEVHMLS-------RHSFNALLKTLEEPPEYVKFLLA  155 (696)
T ss_pred             ECCCCCCHHH----------HHHHHHH-CCCCCCCCCEEEEEEEHHHHCC-------HHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             0565578899----------9999984-5457767754799970054438-------99999998750279754489984


Q ss_pred             CCCCCC-HHHHHH
Q ss_conf             532488-899999
Q gi|254780129|r  163 TPSPNG-LIDLWG  174 (220)
Q Consensus       163 TPi~n~-~~el~~  174 (220)
T Consensus       156 tt~~~k~p~tils  168 (696)
T PRK06872        156 TTDPQKLPITILS  168 (696)
T ss_pred             CCCHHHCCHHHHH
T ss_conf             3863227488987