HHsearch alignment for GI: 254780129 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.13  E-value=0.092  Score=29.28  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=65.7

Q ss_pred             EEEECCCCCHHHHHHHHHHHH-HHCCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf             999689998899999999999-740899489972-331013788999985155346069986112101122345676627
Q gi|254780129|r   23 ALWASMGSGKTVSVLFALSTI-KILDPRPVLIIA-PLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLY  100 (220)
Q Consensus        23 ~l~~~~G~GKT~~ai~~~~~~-~~~~~~~~LIi~-P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (220)
T Consensus       180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTY--RIgAvEQLktYa~IlgvPv~v-------------------  238 (404)
T PRK06995        180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY--RIGGHEQLRIYGKILGVPVHA-------------------  238 (404)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHHHHHCCCEEEE-------------------
T ss_conf             98668887637589999999999838983799976875--478999999999875955999-------------------


Q ss_pred             EECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             86566731000000002472000025122013654332036999999985--1379879983165324888999999998
Q gi|254780129|r  101 IINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA--FSKVKRFIELTGTPSPNGLIDLWGQIWF  178 (220)
Q Consensus       101 i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~--~~~~~~~l~LTgTPi~n~~~el~~ll~~  178 (220)
T Consensus       239 v~~~~eL~~aL~~l---~~~dlILIDTaGr--s~rD---~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~  310 (404)
T PRK06995        239 VKDAADLRLALAEL---RNKHIVLIDTVGM--SQRD---RMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRG  310 (404)
T ss_pred             ECCHHHHHHHHHHH---CCCCEEEEECCCC--CCCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             59999999999970---8999999809998--9768---88999999997357885289997798999999999998446


Q ss_pred             HCCC
Q ss_conf             2888
Q gi|254780129|r  179 LDKG  182 (220)
Q Consensus       179 l~p~  182 (220)
T Consensus       311 ~~~~  314 (404)
T PRK06995        311 PGLA  314 (404)
T ss_pred             CCCC
T ss_conf             9998