HHsearch alignment for GI: 254780129 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.13 E-value=0.092 Score=29.28 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=65.7
Q ss_pred EEEECCCCCHHHHHHHHHHHH-HHCCCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 999689998899999999999-740899489972-331013788999985155346069986112101122345676627
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTI-KILDPRPVLIIA-PLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLY 100 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~-~~~~~~~~LIi~-P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (220)
T Consensus 180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTY--RIgAvEQLktYa~IlgvPv~v------------------- 238 (404)
T PRK06995 180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY--RIGGHEQLRIYGKILGVPVHA------------------- 238 (404)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHHHHHCCCEEEE-------------------
T ss_conf 98668887637589999999999838983799976875--478999999999875955999-------------------
Q ss_pred EECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 86566731000000002472000025122013654332036999999985--1379879983165324888999999998
Q gi|254780129|r 101 IINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA--FSKVKRFIELTGTPSPNGLIDLWGQIWF 178 (220)
Q Consensus 101 i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~--~~~~~~~l~LTgTPi~n~~~el~~ll~~ 178 (220)
T Consensus 239 v~~~~eL~~aL~~l---~~~dlILIDTaGr--s~rD---~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~ 310 (404)
T PRK06995 239 VKDAADLRLALAEL---RNKHIVLIDTVGM--SQRD---RMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRG 310 (404)
T ss_pred ECCHHHHHHHHHHH---CCCCEEEEECCCC--CCCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 59999999999970---8999999809998--9768---88999999997357885289997798999999999998446
Q ss_pred HCCC
Q ss_conf 2888
Q gi|254780129|r 179 LDKG 182 (220)
Q Consensus 179 l~p~ 182 (220)
T Consensus 311 ~~~~ 314 (404)
T PRK06995 311 PGLA 314 (404)
T ss_pred CCCC
T ss_conf 9998