HHsearch alignment for GI: 254780129 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.19 E-value=0.0059 Score=36.14 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCEEEECC-CCCHHHHHHHHHHHHHHCC----CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 81999689-9988999999999997408----994899723310137889999851553460699861121011223456
Q gi|254780129|r 21 RCALWASM-GSGKTVSVLFALSTIKILD----PRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNT 95 (220)
Q Consensus 21 ~~~l~~~~-G~GKT~~ai~~~~~~~~~~----~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T Consensus 46 ~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c--~~c~~--c~~i~~---~~~~d~~e~daas~~~v----- 113 (600)
T PRK09111 46 QAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPC--GVGEH--CQAIME---GRHVDVIEMDAASHTGV----- 113 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCHH--HHHHHC---CCCCCEEEEECCCCCCH-----
T ss_conf 0476457898789999999999966988766689988989--98865--898866---89987588515545788-----
Q ss_pred CCCEEEECHHHHHCC---CCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHH
Q ss_conf 766278656673100---0000002472000025122013654332036999999985137987998316532488-899
Q gi|254780129|r 96 PAHLYIINFENIPWL---VKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNG-LID 171 (220)
Q Consensus 96 ~~~~~i~~~~~l~~~---~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~-~~e 171 (220)
T Consensus 114 ---------~~~r~~~~~~~~~p~~~~~kv~iidevhmls-------~~afnallktleepp~~~~fi~att~~~k~p~t 177 (600)
T PRK09111 114 ---------DDIREIIESVRYRPVSARYKVYIIDEVHMLS-------TAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 177 (600)
T ss_pred ---------HHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHH
T ss_conf ---------8999999860538877754699960011057-------999999998762598654999962853437589
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780129|r 172 LWGQIW 177 (220)
Q Consensus 172 l~~ll~ 177 (220)
T Consensus 178 i~src~ 183 (600)
T PRK09111 178 VLSRCQ 183 (600)
T ss_pred HHHHHH
T ss_conf 985441