HHsearch alignment for GI: 254780129 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=92.15 E-value=0.25 Score=26.79 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=33.2
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 999996798199968999889999999999974089948997233101
Q gi|254780129|r 13 VNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVA 60 (220)
Q Consensus 13 ~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~ 60 (220)
T Consensus 95 ~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-~G~~v~f~~~~~L~ 141 (258)
T PRK09183 95 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAADLL 141 (258)
T ss_pred CCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHHH
T ss_conf 816655886799899998689999999999998-79939997899999