HHsearch alignment for GI: 254780129 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=99.65 E-value=3e-15 Score=106.75 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHH---C---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 134899999999996---7---9819996899988999999999997408994899723310137889999851553460
Q gi|254780129|r 4 VLKPHQIVMVNWLLS---H---DRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDM 77 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~---~---~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~ 77 (220)
T Consensus 600 eET~DQl~AI~eV~~DMes~~PMDRLiCGDVGfGKTEVA~RAAFka-v~~gkQVavlvPTTiLA~QH~~tF~~Rf~~~pv 678 (1148)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 (1148)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7876899999999877638867741567688887799999999999-963980899836622379999999987641573
Q ss_pred EEEEEECCC--CCCC---CC-CCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 699861121--0112---23-45676627865667310000000024720000251220136543320369999999851
Q gi|254780129|r 78 TVSSLIGSE--RQRI---KA-LNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAF 151 (220)
Q Consensus 78 ~~~~~~~~~--~~~~---~~-~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~ 151 (220)
T Consensus 679 ~i~~LsRf~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv~----f~~LGLlIiDEEqrF-------GV~~KE~lk~l~- 746 (1148)
T PRK10689 679 RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVK----WKDLGLLIVDEEHRF-------GVRHKERIKAMR- 746 (1148)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCC----CCCCCEEEECCCHHC-------CHHHHHHHHHCC-
T ss_conf 37750388889999999999866998776204888669865----466643786010213-------799999997228-
Q ss_pred CCCCEEEEECCCCCCCCH-HHHHHH
Q ss_conf 379879983165324888-999999
Q gi|254780129|r 152 SKVKRFIELTGTPSPNGL-IDLWGQ 175 (220)
Q Consensus 152 ~~~~~~l~LTgTPi~n~~-~el~~l 175 (220)
T Consensus 747 -~~vdvLtltATPIPRTL~msl~G~ 770 (1148)
T PRK10689 747 -ADVDILTLTATPIPRTLNMAMSGM 770 (1148)
T ss_pred -CCCCEEEEECCCCHHHHHHHHCCC
T ss_conf -998789762556446999988077