HHsearch alignment for GI: 254780129 and conserved domain: PRK11131

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=98.89  E-value=3e-08  Score=66.55  Aligned_cols=158  Identities=15%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCHHH----HHHHHHHHCCCCCCEEE
Q ss_conf             8999999999967981999689998899999999999740899489972--33101378----89999851553460699
Q gi|254780129|r    7 PHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIA--PLRVAQYV----WKDEVERWSAFSDMTVS   80 (220)
Q Consensus         7 p~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~--P~s~~~~~----W~~e~~~~~~~~~~~~~   80 (220)
T Consensus        77 ~~r~~i~~~i~~nqVvii~GeTGsGKTTQiPq~~le~g~--g~~~~I~~TQPRRiAA~svA~RVA~E~~---~~lG----  147 (1295)
T PRK11131         77 QKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGR--GIKGLIGHTQPRRLAARTVANRIAEELE---TELG----  147 (1295)
T ss_pred             HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCEEEECCCHHHHHHHHHHHHHHHHC---CCCC----
T ss_conf             899999999997996999768999878899999996279--9999899779659999999999999819---9989----


Q ss_pred             EEECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf             861121011223456766278656673100000000247200002512201365433203699999998513-7987998
Q gi|254780129|r   81 SLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFS-KVKRFIE  159 (220)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~-~~~~~l~  159 (220)
T Consensus       148 ~~VGY~VRf~~~~s~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHE-Rsl---~~D~LLg~Lk~ll~~R~dLKvIi  223 (1295)
T PRK11131        148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHE-RSL---NIDFILGYLKELLPRRPDLKVII  223 (1295)
T ss_pred             CEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCC-CCC---HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             98888945698879997799976569999862099878877799868556-880---19999999999983399988999


Q ss_pred             ECCCCCCCCHHHHHHHHH
Q ss_conf             316532488899999999
Q gi|254780129|r  160 LTGTPSPNGLIDLWGQIW  177 (220)
Q Consensus       160 LTgTPi~n~~~el~~ll~  177 (220)
T Consensus       224 mSATid~e~fs~yF~~ap  241 (1295)
T PRK11131        224 TSATIDPERFSRHFNNAP  241 (1295)
T ss_pred             ECCCCCHHHHHHHCCCCC
T ss_conf             558689799996579999