HHsearch alignment for GI: 254780129 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=98.89 E-value=3e-08 Score=66.55 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCHHH----HHHHHHHHCCCCCCEEE
Q ss_conf 8999999999967981999689998899999999999740899489972--33101378----89999851553460699
Q gi|254780129|r 7 PHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIA--PLRVAQYV----WKDEVERWSAFSDMTVS 80 (220)
Q Consensus 7 p~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~--P~s~~~~~----W~~e~~~~~~~~~~~~~ 80 (220)
T Consensus 77 ~~r~~i~~~i~~nqVvii~GeTGsGKTTQiPq~~le~g~--g~~~~I~~TQPRRiAA~svA~RVA~E~~---~~lG---- 147 (1295)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGR--GIKGLIGHTQPRRLAARTVANRIAEELE---TELG---- 147 (1295)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCC--CCCCEEEECCCHHHHHHHHHHHHHHHHC---CCCC----
T ss_conf 899999999997996999768999878899999996279--9999899779659999999999999819---9989----
Q ss_pred EEECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 861121011223456766278656673100000000247200002512201365433203699999998513-7987998
Q gi|254780129|r 81 SLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFS-KVKRFIE 159 (220)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~-~~~~~l~ 159 (220)
T Consensus 148 ~~VGY~VRf~~~~s~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHE-Rsl---~~D~LLg~Lk~ll~~R~dLKvIi 223 (1295)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHE-RSL---NIDFILGYLKELLPRRPDLKVII 223 (1295)
T ss_pred CEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCC-CCC---HHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98888945698879997799976569999862099878877799868556-880---19999999999983399988999
Q ss_pred ECCCCCCCCHHHHHHHHH
Q ss_conf 316532488899999999
Q gi|254780129|r 160 LTGTPSPNGLIDLWGQIW 177 (220)
Q Consensus 160 LTgTPi~n~~~el~~ll~ 177 (220)
T Consensus 224 mSATid~e~fs~yF~~ap 241 (1295)
T PRK11131 224 TSATIDPERFSRHFNNAP 241 (1295)
T ss_pred ECCCCCHHHHHHHCCCCC
T ss_conf 558689799996579999