HHsearch alignment for GI: 254780129 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=99.61 E-value=2.7e-14 Score=101.27 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHH-----HCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 134899999999996798199968999889999-99999997-----408994899723310137889999851553460
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSV-LFALSTIK-----ILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDM 77 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~-----~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~ 77 (220)
T Consensus 25 ~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l~~~~~i 104 (417)
T PRK11192 25 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHL 104 (417)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999997799889989998679999999999998752103689964999947199999999999986400573
Q ss_pred EEEEEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCC-CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 6998611210--11223456766278656673100000-00024720000251220136543320369999999851379
Q gi|254780129|r 78 TVSSLIGSER--QRIKALNTPAHLYIINFENIPWLVKM-KLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKV 154 (220)
Q Consensus 78 ~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~-~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~ 154 (220)
T Consensus 105 ~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD~mld~gF---~~~i~~I~~~~-~~~ 180 (417)
T PRK11192 105 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGF---AQDVEHIAAET-RWR 180 (417)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC---HHHHHHHHHHC-CCC
T ss_conf 05998568787999999836999899786077778863670104574899967552111354---78999998647-677
Q ss_pred CEEEEECCCCCCCCHHHHH
Q ss_conf 8799831653248889999
Q gi|254780129|r 155 KRFIELTGTPSPNGLIDLW 173 (220)
Q Consensus 155 ~~~l~LTgTPi~n~~~el~ 173 (220)
T Consensus 181 ~Q~llfSATl~~~~v~~l~ 199 (417)
T PRK11192 181 KQTLLFSATLEGDGVQDFA 199 (417)
T ss_pred CEEEEEEEECCHHHHHHHH
T ss_conf 2389997326847899999