HHsearch alignment for GI: 254780129 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.87 E-value=1.7e-21 Score=142.56 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHH-----HCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 8713489999999999-----67981999689998899999999999-74089948997233101378899998515534
Q gi|254780129|r 2 HLVLKPHQIVMVNWLL-----SHDRCALWASMGSGKTVSVLFALSTI-KILDPRPVLIIAPLRVAQYVWKDEVERWSAFS 75 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~-----~~~~~~l~~~~G~GKT~~ai~~~~~~-~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~ 75 (220)
T Consensus 414 ~i~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~ 493 (1126)
T PRK11448 414 ELGLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEG 493 (1126)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 77786889999999999998098546887248885898999999999965876725798565899999999875434545
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEECHHHHHCCCC-----CCCCCCCCCCCCCCHHHCC--------------CCCCC
Q ss_conf 6069986112101122345676627865667310000-----0000247200002512201--------------36543
Q gi|254780129|r 76 DMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVK-----MKLDHWDFATIVVDESTKL--------------KSFRT 136 (220)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~-----~~~~~~~~~~iIiDEaH~~--------------kn~~~ 136 (220)
T Consensus 494 ~~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~- 572 (1126)
T PRK11448 494 NQTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQL- 572 (1126)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHH-
T ss_conf 6664002200102567878777199973078998752357677999985137989778788743323110001023202-
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 3203699999998513798799831653248889999
Q gi|254780129|r 137 HQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLW 173 (220)
Q Consensus 137 ~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~ 173 (220)
T Consensus 573 -s~~skyr~Ild---YFDA~~iGLTATP~~~-T~~~F 604 (1126)
T PRK11448 573 -DYVSKYRRVLD---YFDAVKIGLTATPALH-TTEIF 604 (1126)
T ss_pred -HHHHHHHHHHH---HHHHHHHCCCCCCCCC-HHHHH
T ss_conf -47778999987---6215540476799955-56770