HHsearch alignment for GI: 254780129 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=98.78 E-value=1.6e-07 Score=62.40 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=80.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 9999999967981999689998899999-999999740899489972331013788999985155346069986112101
Q gi|254780129|r 10 IVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQ 88 (220)
Q Consensus 10 ~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~ 88 (220)
T Consensus 11 ~~i~~~l~~~~~~vl~a~tGsGKtTqvP~~ll~~--~~~~g~I~~~qPRR~AA~s~A~RvA~e~~---e~~G~~VGY~vR 85 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQQ--GGINGKIIMLEPRRLAARNVAQRLAEQLG---EKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHC--CCCCCCEEEECCHHHHHHHHHHHHHHHHC---CCCCCEEEEEEC
T ss_conf 9999999979979999089999899999999964--68899389938839999999999999729---999986757825
Q ss_pred CCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEECCCCCC
Q ss_conf 122345676627865667310000000024720000251220136543320369999999851--379879983165324
Q gi|254780129|r 89 RIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAF--SKVKRFIELTGTPSP 166 (220)
Q Consensus 89 ~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~--~~~~~~l~LTgTPi~ 166 (220)
T Consensus 86 ~e~~~s~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HE-R~l~---~Dl~l~l~~~~~~~~r~dLklvvMSATld~ 161 (812)
T PRK11664 86 AESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHE-RSLQ---ADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred CCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCC-CCHH---HHHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 677889985799975589999972497767788899957546-8751---899999999999861898289998478884
Q ss_pred CCHHHHHH
Q ss_conf 88899999
Q gi|254780129|r 167 NGLIDLWG 174 (220)
Q Consensus 167 n~~~el~~ 174 (220)
T Consensus 162 ~~~~~~~~ 169 (812)
T PRK11664 162 DRLQQLLP 169 (812)
T ss_pred HHHHHHCC
T ss_conf 88997589