HHsearch alignment for GI: 254780129 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.48 E-value=0.02 Score=33.06 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=44.0
Q ss_pred CCCCEEE-ECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 7981999-689998899999999999740899489972331013788999985155346069986112101122345676
Q gi|254780129|r 19 HDRCALW-ASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPA 97 (220)
Q Consensus 19 ~~~~~l~-~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (220)
T Consensus 205 ~g~VIaLVGvnGvGKTTTiAKLA~~l~~~g-kkV~LVAaDT-FRaAAiEQLk~~g~rlgVpV~~--~~d----------- 269 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDT-FRSGAVEQFQGYADKLDVELIV--ATS----------- 269 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCC-CCHHHHHHHHHHHHHHCCEEEE--ECC-----------
T ss_conf 690899989998978999999999999779-9179997066-7788999999999997964998--188-----------
Q ss_pred CEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 62786566731000000002472000025122013
Q gi|254780129|r 98 HLYIINFENIPWLVKMKLDHWDFATIVVDESTKLK 132 (220)
Q Consensus 98 ~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~k 132 (220)
T Consensus 270 ------pa~l~~av~~~a~~~~~DvVIIDTAGRl~ 298 (407)
T PRK12726 270 ------PAELEEAVQYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred ------HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf ------89999999999862899989996999881