HHsearch alignment for GI: 254780129 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.70  E-value=1.2  Score=22.97  Aligned_cols=130  Identities=15%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             EEEECCCCCHHHHHHHHHH-HHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf             9996899988999999999-9974089948-9972331013788999985155346069986112101122345676627
Q gi|254780129|r   23 ALWASMGSGKTVSVLFALS-TIKILDPRPV-LIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLY  100 (220)
Q Consensus        23 ~l~~~~G~GKT~~ai~~~~-~~~~~~~~~~-LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (220)
T Consensus       352 AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~Dt--yRiga~eQL~~y~~ilgvpv~~~------------------  411 (557)
T PRK12727        352 ALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT--QRVGGREQLHSYGRQLGIAVHEA------------------  411 (557)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCHHHHHHHHHHHHHHCCEEEEE------------------
T ss_conf             8743777673117999999999973998189997266--40879999999999839757982------------------


Q ss_pred             EECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             86566731000000002472000025122013654332036999999985-13798799831653248889999999982
Q gi|254780129|r  101 IINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA-FSKVKRFIELTGTPSPNGLIDLWGQIWFL  179 (220)
Q Consensus       101 i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~-~~~~~~~l~LTgTPi~n~~~el~~ll~~l  179 (220)
T Consensus       412 -~~~~~l~~~l~~l---~~~~lvliDTaG~--~~r---d~~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~  482 (557)
T PRK12727        412 -DSAESLLDLLERL---RDYKLVLIDTAGM--GQR---DRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHA  482 (557)
T ss_pred             -CCHHHHHHHHHHH---CCCCEEEEECCCC--CCC---CHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf             -8999999999983---6999899949998--846---999999999875147763599996889989999999985379


Q ss_pred             CC
Q ss_conf             88
Q gi|254780129|r  180 DK  181 (220)
Q Consensus       180 ~p  181 (220)
T Consensus       483 ~~  484 (557)
T PRK12727        483 KP  484 (557)
T ss_pred             CC
T ss_conf             98