HHsearch alignment for GI: 254780129 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.70 E-value=1.2 Score=22.97 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=63.2
Q ss_pred EEEECCCCCHHHHHHHHHH-HHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 9996899988999999999-9974089948-9972331013788999985155346069986112101122345676627
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALS-TIKILDPRPV-LIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLY 100 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~-~~~~~~~~~~-LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (220)
T Consensus 352 AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~Dt--yRiga~eQL~~y~~ilgvpv~~~------------------ 411 (557)
T PRK12727 352 ALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT--QRVGGREQLHSYGRQLGIAVHEA------------------ 411 (557)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCHHHHHHHHHHHHHHCCEEEEE------------------
T ss_conf 8743777673117999999999973998189997266--40879999999999839757982------------------
Q ss_pred EECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 86566731000000002472000025122013654332036999999985-13798799831653248889999999982
Q gi|254780129|r 101 IINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA-FSKVKRFIELTGTPSPNGLIDLWGQIWFL 179 (220)
Q Consensus 101 i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~-~~~~~~~l~LTgTPi~n~~~el~~ll~~l 179 (220)
T Consensus 412 -~~~~~l~~~l~~l---~~~~lvliDTaG~--~~r---d~~~~~~~~~l~~~~~~~~~Lvl~a~~~~~~l~~~~~~~~~~ 482 (557)
T PRK12727 412 -DSAESLLDLLERL---RDYKLVLIDTAGM--GQR---DRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHA 482 (557)
T ss_pred -CCHHHHHHHHHHH---CCCCEEEEECCCC--CCC---CHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf -8999999999983---6999899949998--846---999999999875147763599996889989999999985379
Q ss_pred CC
Q ss_conf 88
Q gi|254780129|r 180 DK 181 (220)
Q Consensus 180 ~p 181 (220)
T Consensus 483 ~~ 484 (557)
T PRK12727 483 KP 484 (557)
T ss_pred CC
T ss_conf 98