HHsearch alignment for GI: 254780129 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=99.90 E-value=9.9e-23 Score=149.71 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=117.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 87134899999999996798199968999889999999999974089948997233101378899998515534606998
Q gi|254780129|r 2 HLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 13 ~ie~R~YQ~el~~~Al~~-NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~ 91 (764)
T PRK13766 13 TIEARLYQQLLAAKALKG-NTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVV 91 (764)
T ss_pred CCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 776538799999999858-9899959986689999999999997489889998588889999999999970999552899
Q ss_pred EECCCCC-CCCCCCCCCCEEEECHHHHHCCCCC-CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6112101-1223456766278656673100000-0002472000025122013654332036999999985137987998
Q gi|254780129|r 82 LIGSERQ-RIKALNTPAHLYIINFENIPWLVKM-KLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIE 159 (220)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~i~~~~~l~~~~~~-~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~ 159 (220)
T Consensus 92 ltG~~~~~~r~~~w~~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gn--h~Y~~I~~~y~~--~~~~PrILG 167 (764)
T PRK13766 92 LTGEISPEKRAALWEKAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGN--YAYVFIAERYHE--DAKNPLVLG 167 (764)
T ss_pred EECCCCHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC--CCHHHHHHHHHH--CCCCCEEEE
T ss_conf 9888782768998607999999908999999829867888228999746666677--628999999985--377855885
Q ss_pred ECCCCCC
Q ss_conf 3165324
Q gi|254780129|r 160 LTGTPSP 166 (220)
Q Consensus 160 LTgTPi~ 166 (220)
T Consensus 168 LTASPGs 174 (764)
T PRK13766 168 LTASPGS 174 (764)
T ss_pred ECCCCCC
T ss_conf 0368876