HHsearch alignment for GI: 254780129 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=97.10 E-value=0.0062 Score=36.01 Aligned_cols=139 Identities=17% Similarity=0.088 Sum_probs=78.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 713489999999999679819-9968999889999999999974089948997233101378899998515534606998
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCA-LWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~-l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 345 ~~Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKStm-L~aAReawEa~GyrV~GaALsGkAA----egLe~~sG---I~Sr- 415 (992)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAAGYEVRGAALSGIAA----ENLEGGSG---IASR- 415 (992)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHH-HHHHHHHHHHCCCEEEEECCCHHHH----HHHHHCCC---CCCH-
T ss_conf 8879999999998647897589983388878899-9999999997798898115006899----97653479---4316-
Q ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHC-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6112101122345676627865667310-000000024720000251220136543320369999999851379879983
Q gi|254780129|r 82 LIGSERQRIKALNTPAHLYIINFENIPW-LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIEL 160 (220)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~L 160 (220)
T Consensus 416 ---------------------TlAs~e~~w~~g~~~L~~~dVlVVDEAGMVgS------RqMarll~~Ae~AGA--KVVL 466 (992)
T PRK13889 416 ---------------------TIASLEHGWGQGRDLLTARDVLVIDEAGMVGT------RQLERVLSHAADAGA--KVVL 466 (992)
T ss_pred ---------------------HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH------HHHHHHHHHHHHCCC--EEEE
T ss_conf ---------------------79999998746733478985899967655774------999999999998499--8999
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 1653248889999999982
Q gi|254780129|r 161 TGTPSPNGLIDLWGQIWFL 179 (220)
Q Consensus 161 TgTPi~n~~~el~~ll~~l 179 (220)
T Consensus 467 VGD~~QLq~IeAGaaFral 485 (992)
T PRK13889 467 VGDPQQLQAIEAGAAFRSI 485 (992)
T ss_pred ECCHHHCCCCCCCHHHHHH
T ss_conf 4887771886468899999