HHsearch alignment for GI: 254780129 and conserved domain: PTZ00110
>PTZ00110 helicase; Provisional.
Probab=99.51 E-value=5.7e-13 Score=93.64 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCC------CCCEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 134899999999996798199968999889999-99999997408------99489972331013788999985155346
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSV-LFALSTIKILD------PRPVLIIAPLRVAQYVWKDEVERWSAFSD 76 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~~------~~~~LIi~P~s~~~~~W~~e~~~~~~~~~ 76 (220)
T Consensus 204 ~PTPIQ~qaIPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~~~~~~~ 283 (602)
T PTZ00110 204 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQFGRSSK 283 (602)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99989999987985698679987897889999999999998516343678997699973839999999999999715478
Q ss_pred CEEEEEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 06998611210--112234567662786566731000000-002472000025122013654332036999999985137
Q gi|254780129|r 77 MTVSSLIGSER--QRIKALNTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSK 153 (220)
Q Consensus 77 ~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~ 153 (220)
T Consensus 284 ir~~~i~GG~~~~~Q~~~L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yLVLDEADRMLDmGFe--~qI~~Il~~i--~p 359 (602)
T PTZ00110 284 LKNSVAYGGVPKRFQTYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFE--PQIRKIVSQI--RP 359 (602)
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCCH--HHHHHHHHHC--CC
T ss_conf 5499997996879999987169999997923899999649987431028998757766354629--9999999858--97
Q ss_pred CCEEEEECCCCCCCCHHHHHH
Q ss_conf 987998316532488899999
Q gi|254780129|r 154 VKRFIELTGTPSPNGLIDLWG 174 (220)
Q Consensus 154 ~~~~l~LTgTPi~n~~~el~~ 174 (220)
T Consensus 360 dRQTlLFSAT-~p~~V~~LA~ 379 (602)
T PTZ00110 360 DRQTLMWSAT-WPKEVQSLAR 379 (602)
T ss_pred CCEEEEEECC-CCHHHHHHHH
T ss_conf 8779999558-9989999999