HHsearch alignment for GI: 254780129 and conserved domain: TIGR00376

>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.

Probab=92.02  E-value=0.74  Score=24.08  Aligned_cols=69  Identities=22%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHH
Q ss_conf             98713489999999999679819-9968999889999999999974089-948997233101378899998
Q gi|254780129|r    1 MHLVLKPHQIVMVNWLLSHDRCA-LWASMGSGKTVSVLFALSTIKILDP-RPVLIIAPLRVAQYVWKDEVE   69 (220)
Q Consensus         1 ~~~~Lrp~Q~~a~~~~~~~~~~~-l~~~~G~GKT~~ai~~~~~~~~~~~-~~~LIi~P~s~~~~~W~~e~~   69 (220)
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~  269 (709)
T TIGR00376       199 LNPNLNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGPEERVLVTAPSNIAVDNLLERLA  269 (709)
T ss_pred             HCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             22232234677765431234416872677776215689999999852853306762353103778888876