HHsearch alignment for GI: 254780129 and conserved domain: TIGR00604
>TIGR00604 rad3 DNA repair helicase (rad3); InterPro: IPR013020 All proteins in this family for which functions are known are DNA-DNA helicases that function in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. .
Probab=95.32 E-value=0.0041 Score=37.03 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHH---H-HCCCCEE-----EECCCCCHHH--------------------HHHHHHH-HHH-HC---------
Q ss_conf 8999999999---9-6798199-----9689998899--------------------9999999-997-40---------
Q gi|254780129|r 7 PHQIVMVNWL---L-SHDRCAL-----WASMGSGKTV--------------------SVLFALS-TIK-IL--------- 46 (220)
Q Consensus 7 p~Q~~a~~~~---~-~~~~~~l-----~~~~G~GKT~--------------------~ai~~~~-~~~-~~--------- 46 (220)
T Consensus 18 p~q~~~~~~~~~~Ld~~~~~~~~~E~dE~PsgtgKt~~GGrisdkdy~~~~~~S~~~SlL~~~~~~~~~~P~nGdrfdvt 97 (813)
T TIGR00604 18 PEQRSYMRDLKRSLDRGDEAILSAEYDEMPSGTGKTIKGGRISDKDYKLDELYSSKVSLLSLILAYQQEKPLNGDRFDVT 97 (813)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCCCCCEECC
T ss_conf 45544457778877147652466355656388874000650020122110244034445542362788388988600003
Q ss_pred --CCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf --899489972331013788999985
Q gi|254780129|r 47 --DPRPVLIIAPLRVAQYVWKDEVER 70 (220)
Q Consensus 47 --~~~~~LIi~P~s~~~~~W~~e~~~ 70 (220)
T Consensus 98 nq~~~Ki~Y~SRT~sq~~~~~~el~k 123 (813)
T TIGR00604 98 NQEVLKIIYASRTHSQLEQAVEELRK 123 (813)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 67542227723686278899999985