HHsearch alignment for GI: 254780129 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=98.67 E-value=1e-07 Score=63.48 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=52.7
Q ss_pred HHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999967-----9819996899988999999999997408994899723310137889999851553460699
Q gi|254780129|r 9 QIVMVNWLLSH-----DRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVS 80 (220)
Q Consensus 9 Q~~a~~~~~~~-----~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~ 80 (220)
T Consensus 14 QP~AI~~L~~~l~~G~~~QtLLGvTGsGKTFT~AnVIa~~----~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEYF 86 (667)
T TIGR00631 14 QPKAIAKLVEGLEAGEKEQTLLGVTGSGKTFTMANVIAQV----QRPTLVLAHNKTLAAQLYNEFKEFFPENAVEYF 86 (667)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH----CCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 1899999999985688714785321486278898999984----798499857776799999999863867724525