HHsearch alignment for GI: 254780129 and conserved domain: TIGR01075
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=90.56 E-value=0.31 Score=26.24 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHH
Q ss_conf 134899999999996798199968999889999999999974089-948997233101378899998
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDP-RPVLIIAPLRVAQYVWKDEVE 69 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~-~~~LIi~P~s~~~~~W~~e~~ 69 (220)
T Consensus 4 ~LN~~QreaVaap--~~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVT--FTNKAA~Em~ 66 (741)
T TIGR01075 4 GLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVT--FTNKAAAEMR 66 (741)
T ss_pred CCCHHHHHHHCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEC--HHHHHHHHHH
T ss_conf 5665778874034--2255487306888502478889988740789985356320--0347899999