HHsearch alignment for GI: 254780129 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=98.27 E-value=4.7e-06 Score=53.95 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHH----H--CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
Q ss_conf 713489999999999----6--798199968999889999999999974089948997233101378899
Q gi|254780129|r 3 LVLKPHQIVMVNWLL----S--HDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKD 66 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~----~--~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~ 66 (220)
T Consensus 259 y~~R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~~~~~vviST~Tk~LQ~QL~E 328 (944)
T TIGR01407 259 YEYREEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKEEEKPVVISTATKVLQSQLLE 328 (944)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 5313889999999999841576611330237664325899999997313788856998363665656568