HHsearch alignment for GI: 254780129 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.83 E-value=0.00011 Score=46.17 Aligned_cols=108 Identities=23% Similarity=0.253 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHC--------C----CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 871348999999999967981999689998899999999999740--------8----9948997233101378899998
Q gi|254780129|r 2 HLVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKIL--------D----PRPVLIIAPLRVAQYVWKDEVE 69 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~--------~----~~~~LIi~P~s~~~~~W~~e~~ 69 (220)
T Consensus 348 ~~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAA----kRl~ 423 (769)
T TIGR01448 348 RLKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAA----KRLA 423 (769)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHH----HHCC
T ss_conf 677068899999998609489985778886168999999999871687755312456776488737743788----8511
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 51553460699861121011223456766278656673100000000247200002512201
Q gi|254780129|r 70 RWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKL 131 (220)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~ 131 (220)
T Consensus 424 E~TG~~a~TIHRLlG~~~~~~~------------------~~k~~~~~~~~DL~IvDE~SM~ 467 (769)
T TIGR01448 424 EVTGLEALTIHRLLGYGSDTKS------------------ENKNLEDPIDADLLIVDESSMV 467 (769)
T ss_pred CCCCCHHHHHHHHHCCCCCCCC------------------CCHHHCCCCCCCEEEEECCCHH
T ss_conf 0026212347786368988873------------------2110113478776998146218