HHsearch alignment for GI: 254780129 and conserved domain: TIGR01967

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.99  E-value=2.3e-05  Score=49.96  Aligned_cols=151  Identities=14%  Similarity=0.066  Sum_probs=78.0

Q ss_pred             HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCC----CCHHHHHHHHHHHCC-CCCCEEEE
Q ss_conf             99999999-67981999689998899999999999740899489972--331----013788999985155-34606998
Q gi|254780129|r   10 IVMVNWLL-SHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIA--PLR----VAQYVWKDEVERWSA-FSDMTVSS   81 (220)
Q Consensus        10 ~~a~~~~~-~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~--P~s----~~~~~W~~e~~~~~~-~~~~~~~~   81 (220)
T Consensus        74 RedI~~AI~~nQVviiAGETGSGKTTQLPKICLELGr--G~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF  151 (1320)
T TIGR01967        74 REDIAKAIAENQVVIIAGETGSGKTTQLPKICLELGR--GSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRF  151 (1320)
T ss_pred             HHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             8999999984898999724487620232167775427--87654124714688999999999998388988613203663


Q ss_pred             EECCCCCCCCCCCCCCCEEEECHHHHHC--CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCC-EEE
Q ss_conf             6112101122345676627865667310--0000000247200002512201365433203699999998513798-799
Q gi|254780129|r   82 LIGSERQRIKALNTPAHLYIINFENIPW--LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVK-RFI  158 (220)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~--~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~-~~l  158 (220)
T Consensus       152 ~D~--------v~~~t~VKLmTDGiLLAE~Q~DRfL~--~YDTIIIDEAHE----RSLNIDFLLGYLK~lL~rRPDLKiI  217 (1320)
T TIGR01967       152 EDQ--------VSSNTLVKLMTDGILLAETQQDRFLE--RYDTIIIDEAHE----RSLNIDFLLGYLKQLLPRRPDLKII  217 (1320)
T ss_pred             CCC--------CCCCCEEEEHHHHHHHHHHHHHHHHH--HCCCEEECCHHH----HHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             142--------68854363032235899852002221--067336511231----1233889998887632668865257


Q ss_pred             EECCCCCCCCHHHHHHHH
Q ss_conf             831653248889999999
Q gi|254780129|r  159 ELTGTPSPNGLIDLWGQI  176 (220)
Q Consensus       159 ~LTgTPi~n~~~el~~ll  176 (220)
T Consensus       218 ITSATID~ERFs~HFn~A  235 (1320)
T TIGR01967       218 ITSATIDPERFSRHFNNA  235 (1320)
T ss_pred             EECCCCCHHHHHHHHCCC
T ss_conf             400235744687862278