HHsearch alignment for GI: 254780129 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.99 E-value=2.3e-05 Score=49.96 Aligned_cols=151 Identities=14% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCC----CCHHHHHHHHHHHCC-CCCCEEEE
Q ss_conf 99999999-67981999689998899999999999740899489972--331----013788999985155-34606998
Q gi|254780129|r 10 IVMVNWLL-SHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIA--PLR----VAQYVWKDEVERWSA-FSDMTVSS 81 (220)
Q Consensus 10 ~~a~~~~~-~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~--P~s----~~~~~W~~e~~~~~~-~~~~~~~~ 81 (220)
T Consensus 74 RedI~~AI~~nQVviiAGETGSGKTTQLPKICLELGr--G~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF 151 (1320)
T TIGR01967 74 REDIAKAIAENQVVIIAGETGSGKTTQLPKICLELGR--GSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRF 151 (1320)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 8999999984898999724487620232167775427--87654124714688999999999998388988613203663
Q ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHC--CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCC-EEE
Q ss_conf 6112101122345676627865667310--0000000247200002512201365433203699999998513798-799
Q gi|254780129|r 82 LIGSERQRIKALNTPAHLYIINFENIPW--LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVK-RFI 158 (220)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~--~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~-~~l 158 (220)
T Consensus 152 ~D~--------v~~~t~VKLmTDGiLLAE~Q~DRfL~--~YDTIIIDEAHE----RSLNIDFLLGYLK~lL~rRPDLKiI 217 (1320)
T TIGR01967 152 EDQ--------VSSNTLVKLMTDGILLAETQQDRFLE--RYDTIIIDEAHE----RSLNIDFLLGYLKQLLPRRPDLKII 217 (1320)
T ss_pred CCC--------CCCCCEEEEHHHHHHHHHHHHHHHHH--HCCCEEECCHHH----HHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 142--------68854363032235899852002221--067336511231----1233889998887632668865257
Q ss_pred EECCCCCCCCHHHHHHHH
Q ss_conf 831653248889999999
Q gi|254780129|r 159 ELTGTPSPNGLIDLWGQI 176 (220)
Q Consensus 159 ~LTgTPi~n~~~el~~ll 176 (220)
T Consensus 218 ITSATID~ERFs~HFn~A 235 (1320)
T TIGR01967 218 ITSATIDPERFSRHFNNA 235 (1320)
T ss_pred EECCCCCHHHHHHHHCCC
T ss_conf 400235744687862278