HHsearch alignment for GI: 254780129 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=98.41 E-value=3.9e-06 Score=54.41 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHH--HHHHHH-H--CC--------CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 348999999999967-9819996899988999999--999997-4--08--------99489972331013788999985
Q gi|254780129|r 5 LKPHQIVMVNWLLSH-DRCALWASMGSGKTVSVLF--ALSTIK-I--LD--------PRPVLIIAPLRVAQYVWKDEVER 70 (220)
Q Consensus 5 Lrp~Q~~a~~~~~~~-~~~~l~~~~G~GKT~~ai~--~~~~~~-~--~~--------~~~~LIi~P~s~~~~~W~~e~~~ 70 (220)
T Consensus 17 PfpwQ~~L~~r~~~G~~P~~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~yvVdRR~vVD~~te~a~~ 96 (975)
T TIGR02621 17 PFPWQLRLAERFVAGEPPESCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVYVVDRRTVVDQSTEEAEK 96 (975)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCEEECCHHHHHHH
T ss_conf 86589999999854898876678753236899999999998740003673242133683137887142453432789999
Q ss_pred HCC---------------------------CCCCEEEEEECCCCCCC----CCCCCC--CCEEEECHHHHHCC-C-CC--
Q ss_conf 155---------------------------34606998611210112----234567--66278656673100-0-00--
Q gi|254780129|r 71 WSA---------------------------FSDMTVSSLIGSERQRI----KALNTP--AHLYIINFENIPWL-V-KM-- 113 (220)
Q Consensus 71 ~~~---------------------------~~~~~~~~~~~~~~~~~----~~~~~~--~~~~i~~~~~l~~~-~-~~-- 113 (220)
T Consensus 97 i~~aL~~~pe~~Av~~vl~slr~~~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPavivgTvDm~gSRLLFrGYg 176 (975)
T TIGR02621 97 IREALGEAPELPAVRYVLESLRSAFAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAVIVGTVDMIGSRLLFRGYG 176 (975)
T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC
T ss_conf 99854688877899999997323678776566523311167553022323345317899669983442023435441345
Q ss_pred -CCCCC-------CCC-CCCCCHHHCCCCCCCCCHHHHHHHHHHHHH-------CCCCEEEEECCCCCCCCHHHH
Q ss_conf -00024-------720-000251220136543320369999999851-------379879983165324888999
Q gi|254780129|r 114 -KLDHW-------DFA-TIVVDESTKLKSFRTHQGTKQTRALGKVAF-------SKVKRFIELTGTPSPNGLIDL 172 (220)
Q Consensus 114 -~~~~~-------~~~-~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~-------~~~~~~l~LTgTPi~n~~~el 172 (220)
T Consensus 177 ~spk~rpihAal~G~DAl~VlDEAHl--------~~~f~e~L~~i~~E~~R~~d~~~~~V~~Ltatp~td~p~~~ 243 (975)
T TIGR02621 177 CSPKSRPIHAALLGQDALIVLDEAHL--------SPAFQETLKQIRSEQQRLEDFLPLRVVELTATPRTDTPDTL 243 (975)
T ss_pred CCCCCCCHHHHHHHCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCHHHCCCCEECCEEEECCCCCCCCC
T ss_conf 67665511222131106654334305--------87899999998511047012268620313663014788654