HHsearch alignment for GI: 254780129 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.54 E-value=1.5e-13 Score=96.97 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC----CCCCEEEE
Q ss_conf 99999999996798--1999689998899999999999740899489972331013788999985155----34606998
Q gi|254780129|r 8 HQIVMVNWLLSHDR--CALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSA----FSDMTVSS 81 (220)
Q Consensus 8 ~Q~~a~~~~~~~~~--~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~----~~~~~~~~ 81 (220)
T Consensus 1 hq~~~~~~~~~~~~~~ivitAPTgsGKT~Aa~lp~l---~-~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~~~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLL---H-GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH---H-CCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 968999999768998699989998569999999997---3-898799977789999999999999998744234644021
Q ss_pred EECCCC----------------------CCCCCCCCCCCEEEECHHHHHCCCCCC-C--------CCCCCCCCCCCHHHC
Q ss_conf 611210----------------------112234567662786566731000000-0--------024720000251220
Q gi|254780129|r 82 LIGSER----------------------QRIKALNTPAHLYIINFENIPWLVKMK-L--------DHWDFATIVVDESTK 130 (220)
Q Consensus 82 ~~~~~~----------------------~~~~~~~~~~~~~i~~~~~l~~~~~~~-~--------~~~~~~~iIiDEaH~ 130 (220)
T Consensus 77 ~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDEiH~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEHC
T ss_conf 14643233444655553434454102566543025899099928899999976201365103999985167477562000
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCC
Q ss_conf 13654332036999999985-1379879983165324
Q gi|254780129|r 131 LKSFRTHQGTKQTRALGKVA-FSKVKRFIELTGTPSP 166 (220)
Q Consensus 131 ~kn~~~~~~~k~~k~l~~~~-~~~~~~~l~LTgTPi~ 166 (220)
T Consensus 157 y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 0676208999999999998633689808998279980