HHsearch alignment for GI: 254780129 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.60 E-value=3.7e-14 Score=100.48 Aligned_cols=167 Identities=23% Similarity=0.269 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 1348999999999967981999689998899999-999999740---899489972331013788999985155346069
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKIL---DPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTV 79 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~---~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~ 79 (220)
T Consensus 21 ~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999999997799889975799722288886999998616676896699996879999999999998505798389
Q ss_pred EEEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 98611210--112234567662786566731000000-002472000025122013654332036999999985137987
Q gi|254780129|r 80 SSLIGSER--QRIKALNTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKR 156 (220)
Q Consensus 80 ~~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~ 156 (220)
T Consensus 101 ~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~gf---~~~i~~I~~~l-~~~~Q 176 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF---EDQIREILKLL-PKDRQ 176 (203)
T ss_pred EEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCC---HHHHHHHHHHC-CCCCE
T ss_conf 998389887999999853875999681899999984886513224899985888874776---99999999858-96777
Q ss_pred EEEECCCCCCCCHHHHHHH
Q ss_conf 9983165324888999999
Q gi|254780129|r 157 FIELTGTPSPNGLIDLWGQ 175 (220)
Q Consensus 157 ~l~LTgTPi~n~~~el~~l 175 (220)
T Consensus 177 ~~lfSAT-~~~~v~~l~~~ 194 (203)
T cd00268 177 TLLFSAT-MPKEVRDLARK 194 (203)
T ss_pred EEEEEEC-CCHHHHHHHHH
T ss_conf 9999804-99889999999